Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791390 | XP_003594386.1 | 99.105 | 447 | 4 | 0 | 1 | 447 | 1 | 447 | 0.0 | 930 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791390 | sp|Q9Y7K5|YGI3_SCHPO | 28.836 | 378 | 236 | 13 | 66 | 437 | 66 | 416 | 7.50e-35 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791390 | G7ISQ5 | 99.105 | 447 | 4 | 0 | 1 | 447 | 1 | 447 | 0.0 | 930 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077370 | Msa0791390 | 0.800806 | 1.212501e-48 | -8.615850e-47 |
| Msa0110220 | Msa0791390 | 0.801709 | 7.924191e-49 | -8.615850e-47 |
| Msa0791390 | Msa0803640 | 0.813525 | 2.449526e-51 | -8.615850e-47 |
| Msa0791390 | Msa0830400 | 0.802125 | 6.505967e-49 | -8.615850e-47 |
| Msa0791390 | Msa1224170 | 0.809579 | 1.764820e-50 | -8.615850e-47 |
| Msa0791390 | Msa1263430 | 0.801664 | 8.090939e-49 | -8.615850e-47 |
| Msa0791390 | Msa1387680 | 0.806123 | 9.584062e-50 | -8.615850e-47 |
| Msa0791390 | Msa1407370 | 0.805201 | 1.496525e-49 | -8.615850e-47 |
| Msa0791390 | Msa1410800 | 0.812124 | 4.963578e-51 | -8.615850e-47 |
| Msa0277960 | Msa0791390 | 0.943318 | 1.493282e-102 | -8.615850e-47 |
| Msa0525770 | Msa0791390 | 0.992349 | 9.302300e-193 | -8.615850e-47 |
| Msa0528990 | Msa0791390 | 0.815488 | 9.012101e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791390 | MtrunA17_Chr2g0291111 | 99.105 | 447 | 4 | 0 | 1 | 447 | 1 | 447 | 0.0 | 930 |
| Msa0791390 | MtrunA17_Chr3g0079951 | 73.649 | 444 | 117 | 0 | 4 | 447 | 3 | 446 | 0.0 | 696 |
| Msa0791390 | MtrunA17_Chr3g0080001 | 66.059 | 439 | 138 | 4 | 1 | 437 | 1 | 430 | 0.0 | 613 |
| Msa0791390 | MtrunA17_Chr7g0222331 | 68.159 | 402 | 127 | 1 | 44 | 445 | 37 | 437 | 0.0 | 596 |
| Msa0791390 | MtrunA17_Chr3g0115611 | 59.045 | 398 | 161 | 2 | 51 | 447 | 61 | 457 | 1.25e-177 | 504 |
| Msa0791390 | MtrunA17_Chr4g0067151 | 26.744 | 172 | 116 | 4 | 281 | 443 | 81 | 251 | 3.83e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791390 | AT3G13340.1 | 73.214 | 448 | 113 | 3 | 1 | 445 | 1 | 444 | 0.0 | 694 |
| Msa0791390 | AT3G13340.3 | 73.214 | 448 | 113 | 3 | 1 | 445 | 1 | 444 | 0.0 | 694 |
| Msa0791390 | AT3G13340.2 | 73.214 | 448 | 113 | 3 | 1 | 445 | 1 | 444 | 0.0 | 694 |
| Msa0791390 | AT1G55680.1 | 71.910 | 445 | 122 | 1 | 1 | 445 | 1 | 442 | 0.0 | 687 |
| Msa0791390 | AT5G56190.2 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa0791390 | AT5G56190.6 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa0791390 | AT5G56190.4 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa0791390 | AT5G56190.5 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa0791390 | AT5G56190.3 | 70.387 | 439 | 125 | 2 | 10 | 447 | 6 | 440 | 0.0 | 658 |
| Msa0791390 | AT5G56190.1 | 70.387 | 439 | 125 | 2 | 10 | 447 | 6 | 440 | 0.0 | 658 |
| Msa0791390 | AT5G56190.7 | 70.387 | 439 | 125 | 2 | 10 | 447 | 27 | 461 | 0.0 | 655 |
| Msa0791390 | AT1G78070.1 | 55.679 | 449 | 196 | 2 | 1 | 447 | 1 | 448 | 2.36e-179 | 509 |
| Msa0791390 | AT1G36070.1 | 55.583 | 412 | 177 | 3 | 37 | 445 | 7 | 415 | 4.72e-172 | 489 |
| Msa0791390 | AT1G36070.2 | 55.610 | 410 | 178 | 3 | 40 | 445 | 5 | 414 | 1.07e-171 | 488 |
| Msa0791390 | AT1G36070.4 | 56.456 | 395 | 169 | 2 | 54 | 445 | 3 | 397 | 3.27e-170 | 484 |
| Msa0791390 | AT1G78070.2 | 57.057 | 333 | 142 | 1 | 115 | 447 | 7 | 338 | 5.42e-145 | 417 |
| Msa0791390 | AT1G78070.3 | 59.306 | 317 | 129 | 0 | 131 | 447 | 23 | 339 | 5.92e-144 | 415 |
| Msa0791390 | AT1G36070.3 | 55.102 | 294 | 132 | 0 | 152 | 445 | 3 | 296 | 1.08e-126 | 369 |
| Msa0791390 | AT1G36070.5 | 55.102 | 294 | 132 | 0 | 152 | 445 | 3 | 296 | 1.08e-126 | 369 |
| Msa0791390 | AT3G49660.1 | 27.517 | 149 | 106 | 2 | 281 | 428 | 74 | 221 | 2.40e-11 | 65.1 |
Find 141 sgRNAs with CRISPR-Local
Find 399 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGATTGTATTACGATTTC+TGG | 0.130313 | 5_3:-2348973 | Msa0791390:CDS |
| TCTGAAGTTCTCAATGTATC+AGG | 0.276261 | 5_3:-2348524 | Msa0791390:CDS |
| GTAGAATGGCTTACATTTAC+TGG | 0.277210 | 5_3:+2346938 | None:intergenic |
| GAGTGCAAAGTAACACAAAA+AGG | 0.280473 | 5_3:-2348995 | Msa0791390:CDS |
| ATTACAAGTTGTTTCCCATT+AGG | 0.291190 | 5_3:+2345022 | None:intergenic |
| AAGATAAAACATGCCGCATT+TGG | 0.295126 | 5_3:-2344756 | Msa0791390:CDS |
| CACATCTGATGGGCGGTATA+TGG | 0.306053 | 5_3:-2344662 | Msa0791390:CDS |
| CAGTGGAGCTGTACATTTCA+TGG | 0.316630 | 5_3:-2347038 | Msa0791390:CDS |
| CTGCAGTGGTATCTGTTATT+CGG | 0.324070 | 5_3:+2349264 | None:intergenic |
| CAAACAATGATGGTGGAATC+AGG | 0.329381 | 5_3:-2347012 | Msa0791390:CDS |
| TAGGGTTTGTTCTGGATCTC+AGG | 0.330252 | 5_3:+2350290 | None:intergenic |
| CGTGATAACTTGTTGATTGC+TGG | 0.331239 | 5_3:-2348344 | Msa0791390:CDS |
| AGGTGCAGCGCCTTGAGGTT+AGG | 0.334060 | 5_3:+2350271 | None:intergenic |
| CATACTTCATTAAGCCCTAA+TGG | 0.339680 | 5_3:-2345037 | Msa0791390:CDS |
| TATGAAAATATACCACAATC+TGG | 0.344776 | 5_3:-2349140 | Msa0791390:CDS |
| AGACAACCCAGATGGTTTAC+TGG | 0.344951 | 5_3:-2344993 | Msa0791390:CDS |
| TTACAAGTTGTTTCCCATTA+GGG | 0.345847 | 5_3:+2345023 | None:intergenic |
| CTTGAGGTTAGGGTTTGTTC+TGG | 0.360436 | 5_3:+2350282 | None:intergenic |
| CGACGATGAATATGATCCTT+TGG | 0.365677 | 5_3:-2349641 | Msa0791390:intron |
| AAAGTCTGTTGCTGTTCTTA+AGG | 0.371400 | 5_3:-2344716 | Msa0791390:CDS |
| AAGTCTGTTGCTGTTCTTAA+GGG | 0.372378 | 5_3:-2344715 | Msa0791390:CDS |
| CGAAGCATTCATGCTTTCCT+TGG | 0.373023 | 5_3:-2346961 | Msa0791390:CDS |
| GGTGCAGCGCCTTGAGGTTA+GGG | 0.380631 | 5_3:+2350272 | None:intergenic |
| TGCAGCTGAGAAACTTAGTT+TGG | 0.385464 | 5_3:-2348622 | Msa0791390:intron |
| GGGAAACAACTTGTAATTGT+TGG | 0.386167 | 5_3:-2345016 | Msa0791390:CDS |
| CCAATCCCCAACACAGAATC+AGG | 0.390571 | 5_3:-2350245 | Msa0791390:intron |
| AAACCCTCCAAGAGGCTTCC+CGG | 0.396154 | 5_3:+2348398 | None:intergenic |
| CCTGATTCTGTGTTGGGGAT+TGG | 0.410269 | 5_3:+2350245 | None:intergenic |
| CACATTACTCAATTGTTCAC+TGG | 0.413639 | 5_3:-2348568 | Msa0791390:CDS |
| TGGAATCAGGGACTTTGATA+TGG | 0.416103 | 5_3:-2346999 | Msa0791390:CDS |
| GAATTGCGATGAAGCAGATT+TGG | 0.418964 | 5_3:+2350343 | None:intergenic |
| TTTCTTCTTTCTACTTCCCT+TGG | 0.428627 | 5_3:+2344348 | None:intergenic |
| TTGTTCTCGAACTACGTATG+AGG | 0.432983 | 5_3:-2347236 | Msa0791390:CDS |
| AGATAAAACATGCCGCATTT+GGG | 0.435179 | 5_3:-2344755 | Msa0791390:CDS |
| TGGTGACCTGATTCTGTGTT+GGG | 0.435677 | 5_3:+2350239 | None:intergenic |
| CATGCCGCATTTGGGATGTT+CGG | 0.441423 | 5_3:-2344747 | Msa0791390:CDS |
| AAACATGGCTTGAGGATGTT+GGG | 0.443968 | 5_3:-2344294 | Msa0791390:three_prime_UTR |
| GTTAAATAATAATTAAAGAA+AGG | 0.445489 | 5_3:-2344253 | Msa0791390:three_prime_UTR |
| TGTTCTGGATCTCAGGGATA+AGG | 0.445855 | 5_3:+2350297 | None:intergenic |
| TCAATACCATGGGGATGAAA+TGG | 0.455707 | 5_3:-2349761 | Msa0791390:CDS |
| ATACTTCATTAAGCCCTAAT+GGG | 0.456324 | 5_3:-2345036 | Msa0791390:CDS |
| TTACTGGTGGATGCTCAAAC+TGG | 0.459274 | 5_3:-2344977 | Msa0791390:CDS |
| GAAACATCCGGGAAGCCTCT+TGG | 0.460435 | 5_3:-2348405 | Msa0791390:CDS |
| TTAAATAATAATTAAAGAAA+GGG | 0.461364 | 5_3:-2344252 | Msa0791390:three_prime_UTR |
| ATGAAAATATACCACAATCT+GGG | 0.463494 | 5_3:-2349139 | Msa0791390:CDS |
| GTGATAACTTGTTGATTGCT+GGG | 0.466192 | 5_3:-2348343 | Msa0791390:CDS |
| TGCACCTCTATGCGGACACT+TGG | 0.466389 | 5_3:-2344836 | Msa0791390:CDS |
| TCAATACGCTTCACATCTGA+TGG | 0.477657 | 5_3:-2344673 | Msa0791390:CDS |
| GCATCCACCAGTAAACCATC+TGG | 0.480791 | 5_3:+2344986 | None:intergenic |
| TTTCGTGGCGGGAGAGCGCT+TGG | 0.483027 | 5_3:-2349688 | Msa0791390:CDS |
| AATCAAGATAGGTATAGTTT+CGG | 0.485908 | 5_3:+2344461 | None:intergenic |
| AATTTACAAGTAATCAAGAT+AGG | 0.487243 | 5_3:+2344450 | None:intergenic |
| GCTGTTCTTAAGGGGAACCT+TGG | 0.487880 | 5_3:-2344706 | Msa0791390:CDS |
| ATGAAGTATTGTTGACTTCA+CGG | 0.491114 | 5_3:+2348937 | None:intergenic |
| AGGGTTTGTTCTGGATCTCA+GGG | 0.497049 | 5_3:+2350291 | None:intergenic |
| CACTGCAGCTGAAGCTAGGA+GGG | 0.506637 | 5_3:-2349249 | Msa0791390:CDS |
| TTCATGGCTTCAAACAATGA+TGG | 0.511644 | 5_3:-2347022 | Msa0791390:CDS |
| TCTGACAGTTCCCCAGATTG+TGG | 0.511760 | 5_3:+2349128 | None:intergenic |
| AGGATATTCAAGGTATACCT+TGG | 0.520079 | 5_3:-2349223 | Msa0791390:CDS |
| TTGAGATTTATGAGCATCCC+AGG | 0.524294 | 5_3:-2347192 | Msa0791390:intron |
| TGCAGTACTTAGACCGACCC+GGG | 0.525488 | 5_3:-2347267 | Msa0791390:intron |
| CCTCCTAGCTTCAGCTGCAG+TGG | 0.526982 | 5_3:+2349250 | None:intergenic |
| ATAATTAAAGAAAGGGAAGG+AGG | 0.528850 | 5_3:-2344245 | Msa0791390:three_prime_UTR |
| GGTGTATGGGATCGTACCTA+TGG | 0.529375 | 5_3:-2344508 | Msa0791390:CDS |
| ATACCACTGCAGCTGAAGCT+AGG | 0.532089 | 5_3:-2349253 | Msa0791390:CDS |
| GGATATTCAAGGTATACCTT+GGG | 0.533298 | 5_3:-2349222 | Msa0791390:CDS |
| TGCAAAGCAAGGATTTGAAA+AGG | 0.535038 | 5_3:-2344602 | Msa0791390:CDS |
| CGGAACATGGCTCAATACCA+TGG | 0.536161 | 5_3:-2349772 | Msa0791390:exon |
| CTTGGATTATTCATTTGCAT+CGG | 0.538168 | 5_3:-2344818 | Msa0791390:CDS |
| TCTTTAATTATTATTTAACA+TGG | 0.541092 | 5_3:+2344257 | None:intergenic |
| TCTGTGTTGGGGATTGGTGA+AGG | 0.541497 | 5_3:+2350251 | None:intergenic |
| TCAAGGAGAGCTTATTTGCA+AGG | 0.543023 | 5_3:-2348315 | Msa0791390:intron |
| GTGTTGCTAACAGAAACATC+CGG | 0.547014 | 5_3:-2348417 | Msa0791390:intron |
| ATGGTGACCTGATTCTGTGT+TGG | 0.550430 | 5_3:+2350238 | None:intergenic |
| GCATCGGCATGGCATCCTGA+TGG | 0.554082 | 5_3:-2344802 | Msa0791390:CDS |
| AAACAATGATGGTGGAATCA+GGG | 0.554650 | 5_3:-2347011 | Msa0791390:CDS |
| TGGCTTACATTTACTGGCCA+AGG | 0.556085 | 5_3:+2346944 | None:intergenic |
| AAAACATGGCTTGAGGATGT+TGG | 0.557034 | 5_3:-2344295 | Msa0791390:three_prime_UTR |
| ACATCCGGGAAGCCTCTTGG+AGG | 0.557479 | 5_3:-2348402 | Msa0791390:CDS |
| TGAAATTGATAGATATCAAG+TGG | 0.560978 | 5_3:-2349807 | Msa0791390:intron |
| AGGAGGGGAAAGGATATTCA+AGG | 0.561263 | 5_3:-2349233 | Msa0791390:CDS |
| AAGGGAAGTAGAAAGAAGAA+AGG | 0.562761 | 5_3:-2344346 | Msa0791390:three_prime_UTR |
| TAATTAAAGAAAGGGAAGGA+GGG | 0.565551 | 5_3:-2344244 | Msa0791390:three_prime_UTR |
| GACAGTATTTATATTACCAA+GGG | 0.566044 | 5_3:-2344364 | Msa0791390:three_prime_UTR |
| ATTATTCATTTGCATCGGCA+TGG | 0.572987 | 5_3:-2344813 | Msa0791390:CDS |
| GGAACATGGCTCAATACCAT+GGG | 0.574129 | 5_3:-2349771 | Msa0791390:exon |
| GTGAACTGTACCGCGGAACA+TGG | 0.575202 | 5_3:-2349785 | Msa0791390:exon |
| TAGACATGCACAAAGTCAGC+TGG | 0.575901 | 5_3:+2344628 | None:intergenic |
| TGACAGTATTTATATTACCA+AGG | 0.578605 | 5_3:-2344365 | Msa0791390:three_prime_UTR |
| AGAAGAAAGGTGAACTGACA+TGG | 0.580682 | 5_3:-2344333 | Msa0791390:three_prime_UTR |
| ATGGCTTCAAACAATGATGG+TGG | 0.583087 | 5_3:-2347019 | Msa0791390:CDS |
| CATCCGGGAAGCCTCTTGGA+GGG | 0.591045 | 5_3:-2348401 | Msa0791390:CDS |
| AGTCTGTTGCTGTTCTTAAG+GGG | 0.593366 | 5_3:-2344714 | Msa0791390:CDS |
| CTGAAGTTCTCAATGTATCA+GGG | 0.594254 | 5_3:-2348523 | Msa0791390:CDS |
| TGAAAATATACCACAATCTG+GGG | 0.594686 | 5_3:-2349138 | Msa0791390:CDS |
| CCACTGCAGCTGAAGCTAGG+AGG | 0.595739 | 5_3:-2349250 | Msa0791390:CDS |
| AGCTGAAGCTAGGAGGGGAA+AGG | 0.598359 | 5_3:-2349243 | Msa0791390:CDS |
| GGTGAAGGTGCAGCGCCTTG+AGG | 0.600594 | 5_3:+2350266 | None:intergenic |
| CGAGAACAAAAGCTAACCCC+GGG | 0.608346 | 5_3:+2347250 | None:intergenic |
| ATAATAATTAAAGAAAGGGA+AGG | 0.609438 | 5_3:-2344248 | Msa0791390:three_prime_UTR |
| TTCAAGGTATACCTTGGGAT+AGG | 0.609582 | 5_3:-2349217 | Msa0791390:CDS |
| ATCTGGGGAACTGTCAGAGA+AGG | 0.611294 | 5_3:-2349123 | Msa0791390:intron |
| GAACTGAAGAAGACTTCCAT+AGG | 0.612333 | 5_3:+2344492 | None:intergenic |
| TTGCAGTACTTAGACCGACC+CGG | 0.612988 | 5_3:-2347268 | Msa0791390:intron |
| GCACAAATTATTACCTCACA+TGG | 0.613998 | 5_3:+2348491 | None:intergenic |
| CATCCACCAGTAAACCATCT+GGG | 0.614282 | 5_3:+2344987 | None:intergenic |
| TGATAACTTGTTGATTGCTG+GGG | 0.614938 | 5_3:-2348342 | Msa0791390:CDS |
| TGTTGCTAACAGAAACATCC+GGG | 0.615478 | 5_3:-2348416 | Msa0791390:intron |
| GGTGGATGCTCAAACTGGAA+AGG | 0.616996 | 5_3:-2344972 | Msa0791390:intron |
| CATACTCCATTTCATCCCCA+TGG | 0.617585 | 5_3:+2349755 | None:intergenic |
| TGATGGGCGGTATATGGCAA+TGG | 0.618608 | 5_3:-2344656 | Msa0791390:CDS |
| ATTGTTGGAGACAACCCAGA+TGG | 0.621293 | 5_3:-2345001 | Msa0791390:CDS |
| TAATCCAAGTGTCCGCATAG+AGG | 0.626398 | 5_3:+2344832 | None:intergenic |
| CAGAACAAACCCTAACCTCA+AGG | 0.626634 | 5_3:-2350281 | Msa0791390:five_prime_UTR |
| TCGAGAACAAAAGCTAACCC+CGG | 0.626956 | 5_3:+2347249 | None:intergenic |
| CAATACGCTTCACATCTGAT+GGG | 0.630378 | 5_3:-2344672 | Msa0791390:CDS |
| AACATGGCTTGAGGATGTTG+GGG | 0.633707 | 5_3:-2344293 | Msa0791390:three_prime_UTR |
| TCAGACACAAATTAGTACAC+TGG | 0.635185 | 5_3:-2348372 | Msa0791390:CDS |
| CAACCCAGATGGTTTACTGG+TGG | 0.637863 | 5_3:-2344990 | Msa0791390:CDS |
| AAATACTAGACAAAAGTACA+TGG | 0.641672 | 5_3:+2344404 | None:intergenic |
| GGTGACCTGATTCTGTGTTG+GGG | 0.643916 | 5_3:+2350240 | None:intergenic |
| TGGTATTGAGCCATGTTCCG+CGG | 0.647892 | 5_3:+2349775 | None:intergenic |
| TCATCATATAGTGTAAAACA+TGG | 0.649993 | 5_3:-2344309 | Msa0791390:three_prime_UTR |
| GATTCCGAACATCCCAAATG+CGG | 0.650878 | 5_3:+2344743 | None:intergenic |
| TGGTGAATCTGATACTGATG+AGG | 0.652098 | 5_3:-2349668 | Msa0791390:CDS |
| AACAAAAGCTAACCCCGGGT+CGG | 0.654067 | 5_3:+2347254 | None:intergenic |
| AGATGATAATGAGATGGCTG+AGG | 0.660989 | 5_3:-2349728 | Msa0791390:CDS |
| GATAACTTGTTGATTGCTGG+GGG | 0.661769 | 5_3:-2348341 | Msa0791390:CDS |
| AGGGCATGTTGCTCCATGTG+AGG | 0.663284 | 5_3:-2348504 | Msa0791390:intron |
| TACGCTTCACATCTGATGGG+CGG | 0.669620 | 5_3:-2344669 | Msa0791390:CDS |
| ACTGCAGCTGAAGCTAGGAG+GGG | 0.672337 | 5_3:-2349248 | Msa0791390:CDS |
| TGTTCAAGATGATAATGAGA+TGG | 0.677180 | 5_3:-2349734 | Msa0791390:CDS |
| GTATTGAGCGTATAGCTCCA+AGG | 0.677573 | 5_3:+2344689 | None:intergenic |
| CATGTCTATGATGCAAAGCA+AGG | 0.680192 | 5_3:-2344613 | Msa0791390:CDS |
| TCTGAGTAAAACCCTCCAAG+AGG | 0.686637 | 5_3:+2348390 | None:intergenic |
| GTAATGCTCAGCCTATCCCA+AGG | 0.694656 | 5_3:+2349206 | None:intergenic |
| TAGACTATTGCACCTCTATG+CGG | 0.699150 | 5_3:-2344844 | Msa0791390:CDS |
| ATAGTGTAAAACATGGCTTG+AGG | 0.708015 | 5_3:-2344302 | Msa0791390:three_prime_UTR |
| GCAGTACTTAGACCGACCCG+GGG | 0.732422 | 5_3:-2347266 | Msa0791390:intron |
| GAACATGGCTCAATACCATG+GGG | 0.752882 | 5_3:-2349770 | Msa0791390:exon |
| TCAAGTGGTGAACTGTACCG+CGG | 0.762754 | 5_3:-2349792 | Msa0791390:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATATTAATTAAATTAT+CGG | + | chr5_3:2345850-2345869 | None:intergenic | 0.0% |
| !!! | TCTTTTTTTTTTTTTTTTTG+TGG | - | chr5_3:2344954-2344973 | Msa0791390:intron | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTTGT+GGG | - | chr5_3:2344955-2344974 | Msa0791390:intron | 10.0% |
| !! | GGTAAAAAAATATATATAAA+AGG | + | chr5_3:2346473-2346492 | None:intergenic | 10.0% |
| !! | AAAATATAAGAAAAAAAGAA+GGG | + | chr5_3:2347371-2347390 | None:intergenic | 10.0% |
| !! | TAAAATATAAGAAAAAAAGA+AGG | + | chr5_3:2347372-2347391 | None:intergenic | 10.0% |
| !!! | TTCTTTTTTTCTTATATTTT+AGG | - | chr5_3:2347371-2347390 | Msa0791390:intron | 10.0% |
| !!! | TCTTTTTTTCTTATATTTTA+GGG | - | chr5_3:2347372-2347391 | Msa0791390:intron | 10.0% |
| !! | TAAAAAATAAAATAAAAGAG+GGG | + | chr5_3:2347930-2347949 | None:intergenic | 10.0% |
| !!! | AAGAGTATAAAATATATTTA+CGG | + | chr5_3:2348425-2348444 | None:intergenic | 10.0% |
| !! | AATTAATAGCTAAAAATAAA+TGG | + | chr5_3:2348641-2348660 | None:intergenic | 10.0% |
| !! | AACAATACAAATATTTAAAA+TGG | + | chr5_3:2348800-2348819 | None:intergenic | 10.0% |
| !!! | CTATTTTTAAATATTTGTAT+AGG | + | chr5_3:2348843-2348862 | None:intergenic | 10.0% |
| !! | CTATACAAATATTTAAAAAT+AGG | - | chr5_3:2348841-2348860 | Msa0791390:intron | 10.0% |
| !! | TCTTTAATTATTATTTAACA+TGG | + | chr5_3:2350260-2350279 | None:intergenic | 10.0% |
| !! | GTTAAATAATAATTAAAGAA+AGG | - | chr5_3:2350261-2350280 | Msa0791390:five_prime_UTR | 10.0% |
| !! | AATTAAATTGAATTGAATTG+AGG | + | chr5_3:2344374-2344393 | None:intergenic | 15.0% |
| !!! | CTGAATTTTATAAACTAATT+TGG | - | chr5_3:2344672-2344691 | Msa0791390:CDS | 15.0% |
| !! | ATATCTATCAATTTCATAAA+TGG | + | chr5_3:2344703-2344722 | None:intergenic | 15.0% |
| !!! | AAAGAAAAAAAAAAGGTATA+GGG | + | chr5_3:2345483-2345502 | None:intergenic | 15.0% |
| !!! | AAAAGAAAAAAAAAAGGTAT+AGG | + | chr5_3:2345484-2345503 | None:intergenic | 15.0% |
| !! | TAAAATCAGAAAGTTATAAA+AGG | + | chr5_3:2346586-2346605 | None:intergenic | 15.0% |
| !! | TACTATAACTAAAATCATAT+GGG | + | chr5_3:2346611-2346630 | None:intergenic | 15.0% |
| !! | TTACTATAACTAAAATCATA+TGG | + | chr5_3:2346612-2346631 | None:intergenic | 15.0% |
| !! | AAATATAAGAAAAAAAGAAG+GGG | + | chr5_3:2347370-2347389 | None:intergenic | 15.0% |
| !! | AAAAAATAAAATAAAAGAGG+GGG | + | chr5_3:2347929-2347948 | None:intergenic | 15.0% |
| !! | ATGTAAAAGAAAACATTAAT+TGG | - | chr5_3:2349152-2349171 | Msa0791390:CDS | 15.0% |
| !!! | AATTTTCATATACTAGAATT+GGG | + | chr5_3:2349427-2349446 | None:intergenic | 15.0% |
| !!! | AAATTTTCATATACTAGAAT+TGG | + | chr5_3:2349428-2349447 | None:intergenic | 15.0% |
| !!! | TATTTTACGCAAATTTTGTT+CGG | - | chr5_3:2344441-2344460 | Msa0791390:exon | 20.0% |
| !! | TTGAATGACATTTGTATTAT+TGG | - | chr5_3:2345036-2345055 | Msa0791390:CDS | 20.0% |
| !! | AGAGAGAAAAGAAAAAAAAA+AGG | + | chr5_3:2345490-2345509 | None:intergenic | 20.0% |
| !! | TAATTAAGAATTAACGTACT+TGG | + | chr5_3:2345605-2345624 | None:intergenic | 20.0% |
| !! | CTTCAAATGATTAAACTAAA+AGG | + | chr5_3:2345632-2345651 | None:intergenic | 20.0% |
| !! | ATGTATTAACTAGATTTAGA+TGG | + | chr5_3:2345822-2345841 | None:intergenic | 20.0% |
| !! | GAAGAAAATTACAAGTAAAT+AGG | + | chr5_3:2346229-2346248 | None:intergenic | 20.0% |
| !! | ACATACACAATTATACATAT+GGG | + | chr5_3:2346531-2346550 | None:intergenic | 20.0% |
| !! | TACATACACAATTATACATA+TGG | + | chr5_3:2346532-2346551 | None:intergenic | 20.0% |
| !! | TACATACACAATTATACATA+AGG | + | chr5_3:2346532-2346551 | None:intergenic | 20.0% |
| !! | ATAAAAAGTTCATGTGATAA+GGG | + | chr5_3:2346648-2346667 | None:intergenic | 20.0% |
| !!! | TTCTAAACAGTAAAGTATTA+GGG | + | chr5_3:2346694-2346713 | None:intergenic | 20.0% |
| !!! | TTTCTAAACAGTAAAGTATT+AGG | + | chr5_3:2346695-2346714 | None:intergenic | 20.0% |
| !!! | AACAATTTGTTTTTGAGATA+CGG | - | chr5_3:2347124-2347143 | Msa0791390:intron | 20.0% |
| !!! | AGAACTACTTAATTATGTTT+TGG | - | chr5_3:2347850-2347869 | Msa0791390:intron | 20.0% |
| !! | AAGAAATTCAATTCAATTCA+AGG | + | chr5_3:2348236-2348255 | None:intergenic | 20.0% |
| !!! | TTTGATAATATACTCCTTTA+AGG | - | chr5_3:2348326-2348345 | Msa0791390:CDS | 20.0% |
| !! | TGACTATCATTTCAATTAAT+TGG | - | chr5_3:2348458-2348477 | Msa0791390:intron | 20.0% |
| !! | AACGTAGTAATATTCAAAAT+TGG | + | chr5_3:2348772-2348791 | None:intergenic | 20.0% |
| !! | AGGAAATAAGTAAAAATAAG+AGG | - | chr5_3:2348861-2348880 | Msa0791390:intron | 20.0% |
| !! | AAATAAGTAAAAATAAGAGG+TGG | - | chr5_3:2348864-2348883 | Msa0791390:intron | 20.0% |
| !! | AAATGAAGGTTATAAATCAA+TGG | + | chr5_3:2348910-2348929 | None:intergenic | 20.0% |
| !! | TAAAAGAAAACATTAATTGG+AGG | - | chr5_3:2349155-2349174 | Msa0791390:CDS | 20.0% |
| !! | AATTTACAAGTAATCAAGAT+AGG | + | chr5_3:2350067-2350086 | None:intergenic | 20.0% |
| !! | ATAATAATTAAAGAAAGGGA+AGG | - | chr5_3:2350266-2350285 | Msa0791390:five_prime_UTR | 20.0% |
| !! | AAGCAGATTTGGAAATTTTA+CGG | + | chr5_3:2344163-2344182 | None:intergenic | 25.0% |
| ! | AAGCAATTGAAATTGATTGA+AGG | + | chr5_3:2344335-2344354 | None:intergenic | 25.0% |
| ! | ATTGAATTGAGGAAATTAAG+AGG | + | chr5_3:2344363-2344382 | None:intergenic | 25.0% |
| ! | CATAATCATTAAGCGAATTA+AGG | + | chr5_3:2344403-2344422 | None:intergenic | 25.0% |
| !! | TTAAAATTAGTTTAGCACGA+AGG | + | chr5_3:2344502-2344521 | None:intergenic | 25.0% |
| !! | AAACTAATTTTAAGCGGTTT+AGG | - | chr5_3:2344509-2344528 | Msa0791390:CDS | 25.0% |
| ! | TGAAATTGATAGATATCAAG+TGG | - | chr5_3:2344707-2344726 | Msa0791390:CDS | 25.0% |
| ! | AAAGACTAAAAACAAACCAA+AGG | + | chr5_3:2344892-2344911 | None:intergenic | 25.0% |
| ! | GATTAATATTTACTACCATG+TGG | - | chr5_3:2345155-2345174 | Msa0791390:intron | 25.0% |
| ! | AGAAGGAAAAATTATGTCAA+TGG | + | chr5_3:2345181-2345200 | None:intergenic | 25.0% |
| ! | TATGAAAATATACCACAATC+TGG | - | chr5_3:2345374-2345393 | Msa0791390:intron | 25.0% |
| ! | ATGAAAATATACCACAATCT+GGG | - | chr5_3:2345375-2345394 | Msa0791390:intron | 25.0% |
| ! | AGACAATATAACATGGAATT+TGG | + | chr5_3:2345676-2345695 | None:intergenic | 25.0% |
| !!! | TGATAAGTTGTTTTGTTATG+TGG | - | chr5_3:2345770-2345789 | Msa0791390:intron | 25.0% |
| !!! | GATAAGTTGTTTTGTTATGT+GGG | - | chr5_3:2345771-2345790 | Msa0791390:intron | 25.0% |
| !!! | CTCATCAGTTTTTAAAACAT+TGG | + | chr5_3:2346302-2346321 | None:intergenic | 25.0% |
| ! | CATAAAAAGTTCATGTGATA+AGG | + | chr5_3:2346649-2346668 | None:intergenic | 25.0% |
| !! | CTTATCACATGAACTTTTTA+TGG | - | chr5_3:2346647-2346666 | Msa0791390:intron | 25.0% |
| !!! | TACCACTTTTCTTTTTGATA+TGG | - | chr5_3:2346889-2346908 | Msa0791390:intron | 25.0% |
| ! | AACCATATCAAAAAGAAAAG+TGG | + | chr5_3:2346894-2346913 | None:intergenic | 25.0% |
| ! | TTAAAAGTGACATTAATCTG+AGG | - | chr5_3:2347188-2347207 | Msa0791390:intron | 25.0% |
| !!! | ATTTTAGGGTCTTAAATTGT+TGG | - | chr5_3:2347386-2347405 | Msa0791390:intron | 25.0% |
| ! | ATTATTACTAGAAATGATCC+AGG | - | chr5_3:2347667-2347686 | Msa0791390:intron | 25.0% |
| !!! | CTTTAGGATTACAAATACAA+TGG | - | chr5_3:2347801-2347820 | Msa0791390:intron | 25.0% |
| !!! | AAATACAATGGATTGTGAAT+AGG | - | chr5_3:2347813-2347832 | Msa0791390:intron | 25.0% |
| !!! | AATACAATGGATTGTGAATA+GGG | - | chr5_3:2347814-2347833 | Msa0791390:intron | 25.0% |
| ! | GCAAGCAAAATTATCAATAT+TGG | + | chr5_3:2348188-2348207 | None:intergenic | 25.0% |
| ! | AAATTCAATTCAATTCAAGG+AGG | + | chr5_3:2348233-2348252 | None:intergenic | 25.0% |
| ! | TGAAAATAGAACACTAAACA+AGG | + | chr5_3:2348285-2348304 | None:intergenic | 25.0% |
| ! | TGAAATGATAGTCAACATTT+AGG | + | chr5_3:2348452-2348471 | None:intergenic | 25.0% |
| ! | ATCATTTCAATTAATTGGAG+AGG | - | chr5_3:2348463-2348482 | Msa0791390:intron | 25.0% |
| ! | GCTAAAAATAAATGGATCTA+AGG | + | chr5_3:2348633-2348652 | None:intergenic | 25.0% |
| ! | ATTTCGTCATGTAGAAATAA+GGG | + | chr5_3:2348675-2348694 | None:intergenic | 25.0% |
| ! | AATTTCGTCATGTAGAAATA+AGG | + | chr5_3:2348676-2348695 | None:intergenic | 25.0% |
| !! | GGGTATTTTCATAACAAAAA+AGG | + | chr5_3:2348731-2348750 | None:intergenic | 25.0% |
| ! | TGGAAATCAAGTAGAAATAA+GGG | + | chr5_3:2348752-2348771 | None:intergenic | 25.0% |
| ! | TTGGAAATCAAGTAGAAATA+AGG | + | chr5_3:2348753-2348772 | None:intergenic | 25.0% |
| !!! | TGGTATTTTTGTGACTAAAT+AGG | - | chr5_3:2348884-2348903 | Msa0791390:intron | 25.0% |
| !!! | TTTTTTTCAAATGCAAACAG+TGG | - | chr5_3:2348957-2348976 | Msa0791390:CDS | 25.0% |
| !! | ACAAATTTAGGAGTATGTTA+CGG | - | chr5_3:2349179-2349198 | Msa0791390:CDS | 25.0% |
| ! | AATAGTTATGAGATAGTTGT+AGG | + | chr5_3:2349247-2349266 | None:intergenic | 25.0% |
| ! | GATAAATTTGTCCTTTGTAT+AGG | - | chr5_3:2349291-2349310 | Msa0791390:intron | 25.0% |
| ! | AATCAAGATAGGTATAGTTT+CGG | + | chr5_3:2350056-2350075 | None:intergenic | 25.0% |
| !! | AAATACTAGACAAAAGTACA+TGG | + | chr5_3:2350113-2350132 | None:intergenic | 25.0% |
| !! | TGTACTTTTGTCTAGTATTT+AGG | - | chr5_3:2350113-2350132 | Msa0791390:intron | 25.0% |
| ! | TGACAGTATTTATATTACCA+AGG | - | chr5_3:2350149-2350168 | Msa0791390:intron | 25.0% |
| ! | GACAGTATTTATATTACCAA+GGG | - | chr5_3:2350150-2350169 | Msa0791390:intron | 25.0% |
| ! | TCATCATATAGTGTAAAACA+TGG | - | chr5_3:2350205-2350224 | Msa0791390:intron | 25.0% |
| !! | ATCTTGCTTATACATGTTTT+TGG | - | chr5_3:2350303-2350322 | Msa0791390:five_prime_UTR | 25.0% |
| ! | AGATTGATGAGTTGAGAAAA+TGG | + | chr5_3:2344298-2344317 | None:intergenic | 30.0% |
| !!! | GATTTAGGTTTTTAGTTTCG+AGG | - | chr5_3:2344463-2344482 | Msa0791390:CDS | 30.0% |
| ! | CGTGCTAAACTAATTTTAAG+CGG | - | chr5_3:2344503-2344522 | Msa0791390:CDS | 30.0% |
| ! | TGTTCAAGATGATAATGAGA+TGG | - | chr5_3:2344780-2344799 | Msa0791390:CDS | 30.0% |
| ! | GATGATGATATGTATTTTCG+TGG | - | chr5_3:2344811-2344830 | Msa0791390:CDS | 30.0% |
| TCGAATTCAAACTGTAACAA+AGG | + | chr5_3:2344929-2344948 | None:intergenic | 30.0% | |
| ! | TCCGTTTGAAAAACTTTTGA+GGG | - | chr5_3:2344991-2345010 | Msa0791390:CDS | 30.0% |
| !! | ACCCTCAAAAGTTTTTCAAA+CGG | + | chr5_3:2344995-2345014 | None:intergenic | 30.0% |
| ! | TATTCGGTTTTCCTGTAATA+AGG | + | chr5_3:2345237-2345256 | None:intergenic | 30.0% |
| TGAAAATATACCACAATCTG+GGG | - | chr5_3:2345376-2345395 | Msa0791390:intron | 30.0% | |
| AGTGCAAAGTAACACAAAAA+GGG | - | chr5_3:2345520-2345539 | Msa0791390:intron | 30.0% | |
| !! | ATGAAGTATTGTTGACTTCA+CGG | + | chr5_3:2345580-2345599 | None:intergenic | 30.0% |
| CATCTTCAGACAATATAACA+TGG | + | chr5_3:2345683-2345702 | None:intergenic | 30.0% | |
| TATCACGAGACAATATAACA+TGG | + | chr5_3:2345731-2345750 | None:intergenic | 30.0% | |
| ! | TTGTTGTTAGAGTATCACTT+AGG | - | chr5_3:2346052-2346071 | Msa0791390:intron | 30.0% |
| ! | ATCTTGTTTGAAACTTAACC+TGG | + | chr5_3:2346329-2346348 | None:intergenic | 30.0% |
| !! | AAAGTATTAGGGTTTGTTAC+AGG | + | chr5_3:2346683-2346702 | None:intergenic | 30.0% |
| CAATTTGTGCAACAAAAGTA+GGG | + | chr5_3:2346951-2346970 | None:intergenic | 30.0% | |
| !!! | TTCACCTTTGTTTTTGAGAT+AGG | - | chr5_3:2347041-2347060 | Msa0791390:intron | 30.0% |
| !!! | TCACCTTTGTTTTTGAGATA+GGG | - | chr5_3:2347042-2347061 | Msa0791390:intron | 30.0% |
| AGGAAATAAAAGAAAGACCT+GGG | + | chr5_3:2347342-2347361 | None:intergenic | 30.0% | |
| AAGGAAATAAAAGAAAGACC+TGG | + | chr5_3:2347343-2347362 | None:intergenic | 30.0% | |
| GAAAAAAAGAAGGGGAAAAA+AGG | + | chr5_3:2347362-2347381 | None:intergenic | 30.0% | |
| ! | TAGAAATGATCCAGGATTTT+TGG | - | chr5_3:2347675-2347694 | Msa0791390:intron | 30.0% |
| TTTGAATTTGCCAAAAATCC+TGG | + | chr5_3:2347688-2347707 | None:intergenic | 30.0% | |
| !! | CTTTAGGATTACAGATACAA+TGG | - | chr5_3:2347735-2347754 | Msa0791390:intron | 30.0% |
| ATTGTGAATAGGGAAATGAA+AGG | - | chr5_3:2347824-2347843 | Msa0791390:intron | 30.0% | |
| TTGTGAATAGGGAAATGAAA+GGG | - | chr5_3:2347825-2347844 | Msa0791390:intron | 30.0% | |
| AGAAAAGAAACTGAAGAGAA+AGG | - | chr5_3:2348058-2348077 | Msa0791390:intron | 30.0% | |
| ! | TCTGATGAATTTTCAGATGT+TGG | - | chr5_3:2348257-2348276 | Msa0791390:intron | 30.0% |
| ATTTCAATTAATTGGAGAGG+AGG | - | chr5_3:2348466-2348485 | Msa0791390:intron | 30.0% | |
| TTTCAATTAATTGGAGAGGA+GGG | - | chr5_3:2348467-2348486 | Msa0791390:intron | 30.0% | |
| ! | AACTTAGAAGTACAGAGTTA+TGG | - | chr5_3:2348525-2348544 | Msa0791390:CDS | 30.0% |
| TTTCTACATGACGAAATTCT+TGG | - | chr5_3:2348678-2348697 | Msa0791390:intron | 30.0% | |
| TTCTACATGACGAAATTCTT+GGG | - | chr5_3:2348679-2348698 | Msa0791390:intron | 30.0% | |
| GGAAATCAAGTAGAAATAAG+GGG | + | chr5_3:2348751-2348770 | None:intergenic | 30.0% | |
| TAATGAGGAATAGACTGAAA+AGG | - | chr5_3:2348995-2349014 | Msa0791390:CDS | 30.0% | |
| TTCGAGTAATGTTATGAGTA+AGG | - | chr5_3:2349055-2349074 | Msa0791390:intron | 30.0% | |
| TATGAGTAAGGAAGAAATGA+TGG | - | chr5_3:2349067-2349086 | Msa0791390:intron | 30.0% | |
| ATGAGTAAGGAAGAAATGAT+GGG | - | chr5_3:2349068-2349087 | Msa0791390:intron | 30.0% | |
| ! | TTAATTGGAGGCACAAATTT+AGG | - | chr5_3:2349167-2349186 | Msa0791390:CDS | 30.0% |
| ATACTTCATTAAGCCCTAAT+GGG | - | chr5_3:2349478-2349497 | Msa0791390:intron | 30.0% | |
| ! | TTACAAGTTGTTTCCCATTA+GGG | + | chr5_3:2349494-2349513 | None:intergenic | 30.0% |
| ! | ATTACAAGTTGTTTCCCATT+AGG | + | chr5_3:2349495-2349514 | None:intergenic | 30.0% |
| CTTGGATTATTCATTTGCAT+CGG | - | chr5_3:2349696-2349715 | Msa0791390:CDS | 30.0% | |
| ATAATTAAAGAAAGGGAAGG+AGG | - | chr5_3:2350269-2350288 | Msa0791390:five_prime_UTR | 30.0% | |
| TAATTAAAGAAAGGGAAGGA+GGG | - | chr5_3:2350270-2350289 | Msa0791390:five_prime_UTR | 30.0% | |
| !!! | TGCTTATACATGTTTTTGGT+TGG | - | chr5_3:2350307-2350326 | Msa0791390:five_prime_UTR | 30.0% |
| ! | CGCAAATTTTGTTCGGATTT+AGG | - | chr5_3:2344448-2344467 | Msa0791390:exon | 35.0% |
| !!! | TTAGGTTTTTAGTTTCGAGG+AGG | - | chr5_3:2344466-2344485 | Msa0791390:CDS | 35.0% |
| TGTTAGTATTATGCTGAGAG+TGG | - | chr5_3:2344620-2344639 | Msa0791390:CDS | 35.0% | |
| ! | GATGATATGTATTTTCGTGG+CGG | - | chr5_3:2344814-2344833 | Msa0791390:CDS | 35.0% |
| ! | ATGATATGTATTTTCGTGGC+GGG | - | chr5_3:2344815-2344834 | Msa0791390:CDS | 35.0% |
| ! | CTCCGTTTGAAAAACTTTTG+AGG | - | chr5_3:2344990-2345009 | Msa0791390:CDS | 35.0% |
| AAATTATGTCAATGGCCACA+TGG | + | chr5_3:2345173-2345192 | None:intergenic | 35.0% | |
| AGGATATTCAAGGTATACCT+TGG | - | chr5_3:2345291-2345310 | Msa0791390:intron | 35.0% | |
| GGATATTCAAGGTATACCTT+GGG | - | chr5_3:2345292-2345311 | Msa0791390:intron | 35.0% | |
| GAGTGCAAAGTAACACAAAA+AGG | - | chr5_3:2345519-2345538 | Msa0791390:intron | 35.0% | |
| GTGCAAAGTAACACAAAAAG+GGG | - | chr5_3:2345521-2345540 | Msa0791390:intron | 35.0% | |
| TGCAAAGTAACACAAAAAGG+GGG | - | chr5_3:2345522-2345541 | Msa0791390:intron | 35.0% | |
| CACATTACTCAATTGTTCAC+TGG | - | chr5_3:2345946-2345965 | Msa0791390:intron | 35.0% | |
| ! | TCTGAAGTTCTCAATGTATC+AGG | - | chr5_3:2345990-2346009 | Msa0791390:intron | 35.0% |
| CTGAAGTTCTCAATGTATCA+GGG | - | chr5_3:2345991-2346010 | Msa0791390:intron | 35.0% | |
| GCACAAATTATTACCTCACA+TGG | + | chr5_3:2346026-2346045 | None:intergenic | 35.0% | |
| TCAGACACAAATTAGTACAC+TGG | - | chr5_3:2346142-2346161 | Msa0791390:intron | 35.0% | |
| !! | GTGATAACTTGTTGATTGCT+GGG | - | chr5_3:2346171-2346190 | Msa0791390:intron | 35.0% |
| !! | TGATAACTTGTTGATTGCTG+GGG | - | chr5_3:2346172-2346191 | Msa0791390:intron | 35.0% |
| !!! | CTGAAAGTACTGTTACGTTT+TGG | - | chr5_3:2346250-2346269 | Msa0791390:intron | 35.0% |
| ! | TTGTTTGAAACTTAACCTGG+AGG | + | chr5_3:2346326-2346345 | None:intergenic | 35.0% |
| ! | CACATGAACTTTTTATGGAC+CGG | - | chr5_3:2346652-2346671 | Msa0791390:intron | 35.0% |
| ! | ACATGAACTTTTTATGGACC+GGG | - | chr5_3:2346653-2346672 | Msa0791390:intron | 35.0% |
| !! | TATTAGGGTTTGTTACAGGT+GGG | + | chr5_3:2346679-2346698 | None:intergenic | 35.0% |
| GCAAAAAGAAAGATGCAATG+AGG | + | chr5_3:2346763-2346782 | None:intergenic | 35.0% | |
| TTAGTCGTTTGTGATTGTGT+TGG | + | chr5_3:2346797-2346816 | None:intergenic | 35.0% | |
| CCAATTTGTGCAACAAAAGT+AGG | + | chr5_3:2346952-2346971 | None:intergenic | 35.0% | |
| !! | CCTACTTTTGTTGCACAAAT+TGG | - | chr5_3:2346949-2346968 | Msa0791390:intron | 35.0% |
| CAACCCTATCTCAAAAACAA+AGG | + | chr5_3:2347048-2347067 | None:intergenic | 35.0% | |
| ACAATCAATTCATCTGTCAG+TGG | - | chr5_3:2347459-2347478 | Msa0791390:intron | 35.0% | |
| TTCATGGCTTCAAACAATGA+TGG | - | chr5_3:2347492-2347511 | Msa0791390:intron | 35.0% | |
| !! | AAACAATGATGGTGGAATCA+GGG | - | chr5_3:2347503-2347522 | Msa0791390:intron | 35.0% |
| GTAGAATGGCTTACATTTAC+TGG | + | chr5_3:2347579-2347598 | None:intergenic | 35.0% | |
| GAAATGTAAGCCATTCTACT+TGG | - | chr5_3:2347615-2347634 | Msa0791390:intron | 35.0% | |
| !! | AGATACAATGGATTGAGAAG+AGG | - | chr5_3:2347747-2347766 | Msa0791390:intron | 35.0% |
| !! | GATACAATGGATTGAGAAGA+GGG | - | chr5_3:2347748-2347767 | Msa0791390:intron | 35.0% |
| TTGAGAAGAGGGAAAGTAAA+TGG | - | chr5_3:2347759-2347778 | Msa0791390:intron | 35.0% | |
| ! | AGAGGGAAAGTAAATGGATT+TGG | - | chr5_3:2347765-2347784 | Msa0791390:intron | 35.0% |
| ! | CAATATTCTGTCTAGCGTTT+TGG | - | chr5_3:2347958-2347977 | Msa0791390:intron | 35.0% |
| CATCATGGGTATGTTTAATG+AGG | - | chr5_3:2348980-2348999 | Msa0791390:CDS | 35.0% | |
| GTGGGATAAAAGATTTGAGA+TGG | - | chr5_3:2349112-2349131 | Msa0791390:intron | 35.0% | |
| TAAGAAGCTCTCCTATACAA+AGG | + | chr5_3:2349305-2349324 | None:intergenic | 35.0% | |
| CATACTTCATTAAGCCCTAA+TGG | - | chr5_3:2349477-2349496 | Msa0791390:intron | 35.0% | |
| GGGAAACAACTTGTAATTGT+TGG | - | chr5_3:2349498-2349517 | Msa0791390:intron | 35.0% | |
| ATTAGAATGAGTCAAGTGTG+TGG | - | chr5_3:2349601-2349620 | Msa0791390:intron | 35.0% | |
| TTAGAATGAGTCAAGTGTGT+GGG | - | chr5_3:2349602-2349621 | Msa0791390:intron | 35.0% | |
| ! | ATTATTCATTTGCATCGGCA+TGG | - | chr5_3:2349701-2349720 | Msa0791390:CDS | 35.0% |
| !! | ATGGTTTCATTTTTGCCACT+GGG | - | chr5_3:2349731-2349750 | Msa0791390:CDS | 35.0% |
| ! | AAATGCGGCATGTTTTATCT+TGG | + | chr5_3:2349759-2349778 | None:intergenic | 35.0% |
| AAGATAAAACATGCCGCATT+TGG | - | chr5_3:2349758-2349777 | Msa0791390:CDS | 35.0% | |
| AGATAAAACATGCCGCATTT+GGG | - | chr5_3:2349759-2349778 | Msa0791390:CDS | 35.0% | |
| ! | AAAGTCTGTTGCTGTTCTTA+AGG | - | chr5_3:2349798-2349817 | Msa0791390:five_prime_UTR | 35.0% |
| ! | AAGTCTGTTGCTGTTCTTAA+GGG | - | chr5_3:2349799-2349818 | Msa0791390:intron | 35.0% |
| TGCAAAGCAAGGATTTGAAA+AGG | - | chr5_3:2349912-2349931 | Msa0791390:intron | 35.0% | |
| !!! | GAGCAAGAGATCGATTTTTT+TGG | - | chr5_3:2349934-2349953 | Msa0791390:intron | 35.0% |
| !!! | AGAGATCGATTTTTTTGGAG+AGG | - | chr5_3:2349939-2349958 | Msa0791390:intron | 35.0% |
| !!! | AGTCGCTTTTTATTGGTGTA+TGG | - | chr5_3:2349992-2350011 | Msa0791390:intron | 35.0% |
| !!! | GTCGCTTTTTATTGGTGTAT+GGG | - | chr5_3:2349993-2350012 | Msa0791390:intron | 35.0% |
| TTTCTTCTTTCTACTTCCCT+TGG | + | chr5_3:2350169-2350188 | None:intergenic | 35.0% | |
| AAGGGAAGTAGAAAGAAGAA+AGG | - | chr5_3:2350168-2350187 | Msa0791390:intron | 35.0% | |
| ATAGTGTAAAACATGGCTTG+AGG | - | chr5_3:2350212-2350231 | Msa0791390:intron | 35.0% | |
| GAATTGCGATGAAGCAGATT+TGG | + | chr5_3:2344174-2344193 | None:intergenic | 40.0% | |
| TCAATACCATGGGGATGAAA+TGG | - | chr5_3:2344753-2344772 | Msa0791390:CDS | 40.0% | |
| ! | AGATGATAATGAGATGGCTG+AGG | - | chr5_3:2344786-2344805 | Msa0791390:CDS | 40.0% |
| TGGTGAATCTGATACTGATG+AGG | - | chr5_3:2344846-2344865 | Msa0791390:intron | 40.0% | |
| CGACGATGAATATGATCCTT+TGG | - | chr5_3:2344873-2344892 | Msa0791390:intron | 40.0% | |
| !! | TCACGGGTTGACATTTGTTT+TGG | - | chr5_3:2345080-2345099 | Msa0791390:intron | 40.0% |
| !!! | TCCTTCTGCTTGCACTTTTT+TGG | - | chr5_3:2345194-2345213 | Msa0791390:intron | 40.0% |
| !!! | CCTTCTGCTTGCACTTTTTT+GGG | - | chr5_3:2345195-2345214 | Msa0791390:intron | 40.0% |
| !!! | CTTCTGCTTGCACTTTTTTG+GGG | - | chr5_3:2345196-2345215 | Msa0791390:intron | 40.0% |
| GGCTATGGATTCCTTATTAC+AGG | - | chr5_3:2345223-2345242 | Msa0791390:intron | 40.0% | |
| CTGCAGTGGTATCTGTTATT+CGG | + | chr5_3:2345253-2345272 | None:intergenic | 40.0% | |
| TTCAAGGTATACCTTGGGAT+AGG | - | chr5_3:2345297-2345316 | Msa0791390:intron | 40.0% | |
| ! | TTCTTTTCTCTCTGATCCAC+AGG | - | chr5_3:2345497-2345516 | Msa0791390:intron | 40.0% |
| GGGGATTGTATTACGATTTC+TGG | - | chr5_3:2345541-2345560 | Msa0791390:intron | 40.0% | |
| AAGATGCGACAAGAGTTGTT+TGG | - | chr5_3:2345649-2345668 | Msa0791390:intron | 40.0% | |
| AAGATGCGACAAGAGTTGTT+TGG | - | chr5_3:2345649-2345668 | Msa0791390:intron | 40.0% | |
| AACAACTTATCAGTCATCGC+AGG | + | chr5_3:2345762-2345781 | None:intergenic | 40.0% | |
| AAACTAAGTTTCTCAGCTGC+AGG | + | chr5_3:2345893-2345912 | None:intergenic | 40.0% | |
| TGCAGCTGAGAAACTTAGTT+TGG | - | chr5_3:2345892-2345911 | Msa0791390:intron | 40.0% | |
| ! | GTGTTGCTAACAGAAACATC+CGG | - | chr5_3:2346097-2346116 | Msa0791390:intron | 40.0% |
| TGTTGCTAACAGAAACATCC+GGG | - | chr5_3:2346098-2346117 | Msa0791390:intron | 40.0% | |
| !! | CGTGATAACTTGTTGATTGC+TGG | - | chr5_3:2346170-2346189 | Msa0791390:intron | 40.0% |
| !! | GATAACTTGTTGATTGCTGG+GGG | - | chr5_3:2346173-2346192 | Msa0791390:intron | 40.0% |
| TCAAGGAGAGCTTATTTGCA+AGG | - | chr5_3:2346199-2346218 | Msa0791390:intron | 40.0% | |
| TAAAAACTGATGAGACCTCC+AGG | - | chr5_3:2346308-2346327 | Msa0791390:intron | 40.0% | |
| GCGATTGAAGACTTACGAAT+TGG | + | chr5_3:2346494-2346513 | None:intergenic | 40.0% | |
| !! | GTATTAGGGTTTGTTACAGG+TGG | + | chr5_3:2346680-2346699 | None:intergenic | 40.0% |
| AATGAGGAACATTTGCTCAC+TGG | + | chr5_3:2346747-2346766 | None:intergenic | 40.0% | |
| GATTGTGTTGGATGAAGAAG+CGG | + | chr5_3:2346785-2346804 | None:intergenic | 40.0% | |
| TTGTTCTCGAACTACGTATG+AGG | - | chr5_3:2347278-2347297 | Msa0791390:intron | 40.0% | |
| TTGAGATTTATGAGCATCCC+AGG | - | chr5_3:2347322-2347341 | Msa0791390:intron | 40.0% | |
| AGGGTCTTAAATTGTTGGCA+TGG | - | chr5_3:2347391-2347410 | Msa0791390:intron | 40.0% | |
| TAGTATGCAGTCATCCTTGA+GGG | + | chr5_3:2347439-2347458 | None:intergenic | 40.0% | |
| TTAGTATGCAGTCATCCTTG+AGG | + | chr5_3:2347440-2347459 | None:intergenic | 40.0% | |
| ATGGCTTCAAACAATGATGG+TGG | - | chr5_3:2347495-2347514 | Msa0791390:intron | 40.0% | |
| !! | CAAACAATGATGGTGGAATC+AGG | - | chr5_3:2347502-2347521 | Msa0791390:intron | 40.0% |
| TGGAATCAGGGACTTTGATA+TGG | - | chr5_3:2347515-2347534 | Msa0791390:intron | 40.0% | |
| CCACAGAAAGTCAAGTAGAA+TGG | + | chr5_3:2347593-2347612 | None:intergenic | 40.0% | |
| CCATTCTACTTGACTTTCTG+TGG | - | chr5_3:2347590-2347609 | Msa0791390:intron | 40.0% | |
| TAGCTAGTTCACAGTGCTTT+AGG | - | chr5_3:2347719-2347738 | Msa0791390:intron | 40.0% | |
| ! | TGGCTAGTTCACAATGCTTT+AGG | - | chr5_3:2347785-2347804 | Msa0791390:intron | 40.0% |
| !! | TACTCCTTTAAGGCACTAAC+TGG | - | chr5_3:2348336-2348355 | Msa0791390:CDS | 40.0% |
| AACAGATTCCAGCTACAAAC+TGG | + | chr5_3:2348401-2348420 | None:intergenic | 40.0% | |
| ! | GTCAGTACGTGATTTTTACG+TGG | + | chr5_3:2348560-2348579 | None:intergenic | 40.0% |
| ACGAAATTCTTGGGCAAGTT+TGG | - | chr5_3:2348688-2348707 | Msa0791390:intron | 40.0% | |
| GACGCAAACGTGAAAAATGA+AGG | + | chr5_3:2348924-2348943 | None:intergenic | 40.0% | |
| AAATGCAAACAGTGGCATCA+TGG | - | chr5_3:2348965-2348984 | Msa0791390:CDS | 40.0% | |
| AATGCAAACAGTGGCATCAT+GGG | - | chr5_3:2348966-2348985 | Msa0791390:CDS | 40.0% | |
| GGTCATACACATGAATGGTT+TGG | + | chr5_3:2349027-2349046 | None:intergenic | 40.0% | |
| TCTCTGGTCATACACATGAA+TGG | + | chr5_3:2349032-2349051 | None:intergenic | 40.0% | |
| AACATTACTCGAAAGCTCTC+TGG | + | chr5_3:2349048-2349067 | None:intergenic | 40.0% | |
| ! | AGTAAGGAAGAAATGATGGG+AGG | - | chr5_3:2349071-2349090 | Msa0791390:intron | 40.0% |
| ! | GTAAGGAAGAAATGATGGGA+GGG | - | chr5_3:2349072-2349091 | Msa0791390:intron | 40.0% |
| AATTTGCATACACAAGCCTC+TGG | + | chr5_3:2349214-2349233 | None:intergenic | 40.0% | |
| TAGACTATTGCACCTCTATG+CGG | - | chr5_3:2349670-2349689 | Msa0791390:CDS | 40.0% | |
| GTGGCAAAAATGAAACCATC+AGG | + | chr5_3:2349730-2349749 | None:intergenic | 40.0% | |
| !! | GATGGTTTCATTTTTGCCAC+TGG | - | chr5_3:2349730-2349749 | Msa0791390:CDS | 40.0% |
| ! | TGTTTTATCTTGGTTCCCAG+TGG | + | chr5_3:2349749-2349768 | None:intergenic | 40.0% |
| ! | AGTCTGTTGCTGTTCTTAAG+GGG | - | chr5_3:2349800-2349819 | Msa0791390:intron | 40.0% |
| TCAATACGCTTCACATCTGA+TGG | - | chr5_3:2349841-2349860 | Msa0791390:intron | 40.0% | |
| CAATACGCTTCACATCTGAT+GGG | - | chr5_3:2349842-2349861 | Msa0791390:intron | 40.0% | |
| CATGTCTATGATGCAAAGCA+AGG | - | chr5_3:2349901-2349920 | Msa0791390:intron | 40.0% | |
| !!! | GATTTTTTTGGAGAGGTCTC+AGG | - | chr5_3:2349946-2349965 | Msa0791390:intron | 40.0% |
| TAAAAAGCGACTCTGTGTCA+GGG | + | chr5_3:2349984-2350003 | None:intergenic | 40.0% | |
| ATAAAAAGCGACTCTGTGTC+AGG | + | chr5_3:2349985-2350004 | None:intergenic | 40.0% | |
| !!! | GACACAGAGTCGCTTTTTAT+TGG | - | chr5_3:2349985-2350004 | Msa0791390:intron | 40.0% |
| GAACTGAAGAAGACTTCCAT+AGG | + | chr5_3:2350025-2350044 | None:intergenic | 40.0% | |
| AGAAGAAAGGTGAACTGACA+TGG | - | chr5_3:2350181-2350200 | Msa0791390:intron | 40.0% | |
| AAAACATGGCTTGAGGATGT+TGG | - | chr5_3:2350219-2350238 | Msa0791390:intron | 40.0% | |
| AAACATGGCTTGAGGATGTT+GGG | - | chr5_3:2350220-2350239 | Msa0791390:intron | 40.0% | |
| ! | TGTTCTGGATCTCAGGGATA+AGG | + | chr5_3:2344220-2344239 | None:intergenic | 45.0% |
| ! | AGGGTTTGTTCTGGATCTCA+GGG | + | chr5_3:2344226-2344245 | None:intergenic | 45.0% |
| ! | TAGGGTTTGTTCTGGATCTC+AGG | + | chr5_3:2344227-2344246 | None:intergenic | 45.0% |
| ! | CTTGAGGTTAGGGTTTGTTC+TGG | + | chr5_3:2344235-2344254 | None:intergenic | 45.0% |
| CAGAACAAACCCTAACCTCA+AGG | - | chr5_3:2344233-2344252 | Msa0791390:three_prime_UTR | 45.0% | |
| TGGTGACCTGATTCTGTGTT+GGG | + | chr5_3:2344278-2344297 | None:intergenic | 45.0% | |
| ATGGTGACCTGATTCTGTGT+TGG | + | chr5_3:2344279-2344298 | None:intergenic | 45.0% | |
| !!! | GGTTTTTAGTTTCGAGGAGG+TGG | - | chr5_3:2344469-2344488 | Msa0791390:CDS | 45.0% |
| GGAACATGGCTCAATACCAT+GGG | - | chr5_3:2344743-2344762 | Msa0791390:CDS | 45.0% | |
| GAACATGGCTCAATACCATG+GGG | - | chr5_3:2344744-2344763 | Msa0791390:CDS | 45.0% | |
| CATACTCCATTTCATCCCCA+TGG | + | chr5_3:2344762-2344781 | None:intergenic | 45.0% | |
| AGTGTTAAACGCGTGCATCA+CGG | - | chr5_3:2345063-2345082 | Msa0791390:intron | 45.0% | |
| ! | CCCAAAAAAGTGCAAGCAGA+AGG | + | chr5_3:2345198-2345217 | None:intergenic | 45.0% |
| !!! | TGCTTGCACTTTTTTGGGGT+GGG | - | chr5_3:2345200-2345219 | Msa0791390:intron | 45.0% |
| AGGAGGGGAAAGGATATTCA+AGG | - | chr5_3:2345281-2345300 | Msa0791390:intron | 45.0% | |
| ATCTCGTCTTGCTTAGTGCT+TGG | - | chr5_3:2345421-2345440 | Msa0791390:intron | 45.0% | |
| ! | GCTTGGAGGCATATGAGTAA+TGG | - | chr5_3:2345438-2345457 | Msa0791390:intron | 45.0% |
| !! | TGTGTTACTTTGCACTCCTG+TGG | + | chr5_3:2345516-2345535 | None:intergenic | 45.0% |
| TCTGAGTAAAACCCTCCAAG+AGG | + | chr5_3:2346127-2346146 | None:intergenic | 45.0% | |
| ! | TTGATTGCTGGGGGTTTTCA+AGG | - | chr5_3:2346182-2346201 | Msa0791390:intron | 45.0% |
| AACGACTAAGTGAAGATCCG+CGG | - | chr5_3:2346808-2346827 | Msa0791390:intron | 45.0% | |
| AGTCAATCTTCGCTACACCA+TGG | + | chr5_3:2346843-2346862 | None:intergenic | 45.0% | |
| TCGAGAACAAAAGCTAACCC+CGG | + | chr5_3:2347268-2347287 | None:intergenic | 45.0% | |
| ATCACTAGTCACAACCCTCA+AGG | - | chr5_3:2347422-2347441 | Msa0791390:intron | 45.0% | |
| CAGTGGAGCTGTACATTTCA+TGG | - | chr5_3:2347476-2347495 | Msa0791390:intron | 45.0% | |
| ! | CGAAGCATTCATGCTTTCCT+TGG | - | chr5_3:2347553-2347572 | Msa0791390:intron | 45.0% |
| TGGCTTACATTTACTGGCCA+AGG | + | chr5_3:2347573-2347592 | None:intergenic | 45.0% | |
| CCACAGAAAGCCAAGTAGAA+TGG | + | chr5_3:2347628-2347647 | None:intergenic | 45.0% | |
| ! | CCATTCTACTTGGCTTTCTG+TGG | - | chr5_3:2347625-2347644 | Msa0791390:intron | 45.0% |
| !!! | GCGTTTTGGCTGTTGCATTA+TGG | - | chr5_3:2347972-2347991 | Msa0791390:intron | 45.0% |
| GTAGCCAGTTAGTGCCTTAA+AGG | + | chr5_3:2348343-2348362 | None:intergenic | 45.0% | |
| ACGAAAAGTTATCCCCTGAC+AGG | + | chr5_3:2348365-2348384 | None:intergenic | 45.0% | |
| ! | TGTCAGGGGATAACTTTTCG+TGG | - | chr5_3:2348364-2348383 | Msa0791390:CDS | 45.0% |
| ! | GTCAGGGGATAACTTTTCGT+GGG | - | chr5_3:2348365-2348384 | Msa0791390:CDS | 45.0% |
| CCAGCTACAAACTGGTGAAA+AGG | + | chr5_3:2348393-2348412 | None:intergenic | 45.0% | |
| ! | CCTTTTCACCAGTTTGTAGC+TGG | - | chr5_3:2348390-2348409 | Msa0791390:CDS | 45.0% |
| AATTGGAGAGGAGGGAAAAG+TGG | - | chr5_3:2348475-2348494 | Msa0791390:intron | 45.0% | |
| ATTGGAGAGGAGGGAAAAGT+GGG | - | chr5_3:2348476-2348495 | Msa0791390:intron | 45.0% | |
| GAAATTGAGAATCCCTCAGC+TGG | - | chr5_3:2348583-2348602 | Msa0791390:CDS | 45.0% | |
| TGAAAAACGACACCAGCTGA+GGG | + | chr5_3:2348598-2348617 | None:intergenic | 45.0% | |
| ATGAAAAACGACACCAGCTG+AGG | + | chr5_3:2348599-2348618 | None:intergenic | 45.0% | |
| GTGCAGTAGAATGTACAGGT+GGG | - | chr5_3:2349094-2349113 | Msa0791390:intron | 45.0% | |
| ATTGTTGGAGACAACCCAGA+TGG | - | chr5_3:2349513-2349532 | Msa0791390:intron | 45.0% | |
| AGACAACCCAGATGGTTTAC+TGG | - | chr5_3:2349521-2349540 | Msa0791390:intron | 45.0% | |
| CATCCACCAGTAAACCATCT+GGG | + | chr5_3:2349530-2349549 | None:intergenic | 45.0% | |
| ! | TTACTGGTGGATGCTCAAAC+TGG | - | chr5_3:2349537-2349556 | Msa0791390:intron | 45.0% |
| TAATCCAAGTGTCCGCATAG+AGG | + | chr5_3:2349685-2349704 | None:intergenic | 45.0% | |
| GATTCCGAACATCCCAAATG+CGG | + | chr5_3:2349774-2349793 | None:intergenic | 45.0% | |
| GTATTGAGCGTATAGCTCCA+AGG | + | chr5_3:2349828-2349847 | None:intergenic | 45.0% | |
| TAGACATGCACAAAGTCAGC+TGG | + | chr5_3:2349889-2349908 | None:intergenic | 45.0% | |
| AACATGGCTTGAGGATGTTG+GGG | - | chr5_3:2350221-2350240 | Msa0791390:intron | 45.0% | |
| !! | ATAAAAAATAAAATAAAAGA+GGG | + | chr5_3:2347931-2347950 | None:intergenic | 5.0% |
| !! | AATAAAAAATAAAATAAAAG+AGG | + | chr5_3:2347932-2347951 | None:intergenic | 5.0% |
| !! | TTAAATAATAATTAAAGAAA+GGG | - | chr5_3:2350262-2350281 | Msa0791390:five_prime_UTR | 5.0% |
| ! | TCTGTGTTGGGGATTGGTGA+AGG | + | chr5_3:2344266-2344285 | None:intergenic | 50.0% |
| CCTGATTCTGTGTTGGGGAT+TGG | + | chr5_3:2344272-2344291 | None:intergenic | 50.0% | |
| CCAATCCCCAACACAGAATC+AGG | - | chr5_3:2344269-2344288 | Msa0791390:three_prime_UTR | 50.0% | |
| GGTGACCTGATTCTGTGTTG+GGG | + | chr5_3:2344277-2344296 | None:intergenic | 50.0% | |
| TCAAGTGGTGAACTGTACCG+CGG | - | chr5_3:2344722-2344741 | Msa0791390:CDS | 50.0% | |
| ! | TGGTATTGAGCCATGTTCCG+CGG | + | chr5_3:2344742-2344761 | None:intergenic | 50.0% |
| CGGAACATGGCTCAATACCA+TGG | - | chr5_3:2344742-2344761 | Msa0791390:CDS | 50.0% | |
| GTGTTAAACGCGTGCATCAC+GGG | - | chr5_3:2345064-2345083 | Msa0791390:intron | 50.0% | |
| !!! | CTGCTTGCACTTTTTTGGGG+TGG | - | chr5_3:2345199-2345218 | Msa0791390:intron | 50.0% |
| !!! | GCTTGCACTTTTTTGGGGTG+GGG | - | chr5_3:2345201-2345220 | Msa0791390:intron | 50.0% |
| !!! | CTTGCACTTTTTTGGGGTGG+GGG | - | chr5_3:2345202-2345221 | Msa0791390:intron | 50.0% |
| ATACCACTGCAGCTGAAGCT+AGG | - | chr5_3:2345261-2345280 | Msa0791390:intron | 50.0% | |
| GTAATGCTCAGCCTATCCCA+AGG | + | chr5_3:2345311-2345330 | None:intergenic | 50.0% | |
| TCTGACAGTTCCCCAGATTG+TGG | + | chr5_3:2345389-2345408 | None:intergenic | 50.0% | |
| ATCTGGGGAACTGTCAGAGA+AGG | - | chr5_3:2345391-2345410 | Msa0791390:intron | 50.0% | |
| TCGTCTTGCTTAGTGCTTGG+AGG | - | chr5_3:2345424-2345443 | Msa0791390:intron | 50.0% | |
| GAGGAACATTTGCTCACTGG+CGG | + | chr5_3:2346744-2346763 | None:intergenic | 50.0% | |
| TTGCAGTACTTAGACCGACC+CGG | - | chr5_3:2347246-2347265 | Msa0791390:CDS | 50.0% | |
| AACAAAAGCTAACCCCGGGT+CGG | + | chr5_3:2347263-2347282 | None:intergenic | 50.0% | |
| CGAGAACAAAAGCTAACCCC+GGG | + | chr5_3:2347267-2347286 | None:intergenic | 50.0% | |
| CACTAACTGGCTACCTGTCA+GGG | - | chr5_3:2348349-2348368 | Msa0791390:CDS | 50.0% | |
| ACTAACTGGCTACCTGTCAG+GGG | - | chr5_3:2348350-2348369 | Msa0791390:CDS | 50.0% | |
| ! | GAGGGTGCAGTAGAATGTAC+AGG | - | chr5_3:2349090-2349109 | Msa0791390:intron | 50.0% |
| GGTGCAGTAGAATGTACAGG+TGG | - | chr5_3:2349093-2349112 | Msa0791390:intron | 50.0% | |
| GTTACGGTAGCATAGACCAG+AGG | - | chr5_3:2349195-2349214 | Msa0791390:CDS | 50.0% | |
| CAACCCAGATGGTTTACTGG+TGG | - | chr5_3:2349524-2349543 | Msa0791390:intron | 50.0% | |
| GCATCCACCAGTAAACCATC+TGG | + | chr5_3:2349531-2349550 | None:intergenic | 50.0% | |
| GGTGGATGCTCAAACTGGAA+AGG | - | chr5_3:2349542-2349561 | Msa0791390:intron | 50.0% | |
| ! | CATGCCGCATTTGGGATGTT+CGG | - | chr5_3:2349767-2349786 | Msa0791390:CDS | 50.0% |
| GCTGTTCTTAAGGGGAACCT+TGG | - | chr5_3:2349808-2349827 | Msa0791390:intron | 50.0% | |
| TACGCTTCACATCTGATGGG+CGG | - | chr5_3:2349845-2349864 | Msa0791390:intron | 50.0% | |
| ! | CACATCTGATGGGCGGTATA+TGG | - | chr5_3:2349852-2349871 | Msa0791390:intron | 50.0% |
| ! | TGATGGGCGGTATATGGCAA+TGG | - | chr5_3:2349858-2349877 | Msa0791390:intron | 50.0% |
| GGTGTATGGGATCGTACCTA+TGG | - | chr5_3:2350006-2350025 | Msa0791390:intron | 50.0% | |
| GTGAACTGTACCGCGGAACA+TGG | - | chr5_3:2344729-2344748 | Msa0791390:CDS | 55.0% | |
| TGTTGAACGCGCGTGATGCA+CGG | - | chr5_3:2345109-2345128 | Msa0791390:intron | 55.0% | |
| !!! | CTTTTTTGGGGTGGGGGCTA+TGG | - | chr5_3:2345208-2345227 | Msa0791390:intron | 55.0% |
| CACTGCAGCTGAAGCTAGGA+GGG | - | chr5_3:2345265-2345284 | Msa0791390:intron | 55.0% | |
| ACTGCAGCTGAAGCTAGGAG+GGG | - | chr5_3:2345266-2345285 | Msa0791390:intron | 55.0% | |
| AGCTGAAGCTAGGAGGGGAA+AGG | - | chr5_3:2345271-2345290 | Msa0791390:intron | 55.0% | |
| AGGGCATGTTGCTCCATGTG+AGG | - | chr5_3:2346010-2346029 | Msa0791390:intron | 55.0% | |
| GAAACATCCGGGAAGCCTCT+TGG | - | chr5_3:2346109-2346128 | Msa0791390:intron | 55.0% | |
| AAACCCTCCAAGAGGCTTCC+CGG | + | chr5_3:2346119-2346138 | None:intergenic | 55.0% | |
| GAACATTTGCTCACTGGCGG+TGG | + | chr5_3:2346741-2346760 | None:intergenic | 55.0% | |
| TGCAGTACTTAGACCGACCC+GGG | - | chr5_3:2347247-2347266 | Msa0791390:CDS | 55.0% | |
| GCACTAACTGGCTACCTGTC+AGG | - | chr5_3:2348348-2348367 | Msa0791390:CDS | 55.0% | |
| TGCACCTCTATGCGGACACT+TGG | - | chr5_3:2349678-2349697 | Msa0791390:CDS | 55.0% | |
| GGTGCAGCGCCTTGAGGTTA+GGG | + | chr5_3:2344245-2344264 | None:intergenic | 60.0% | |
| AGGTGCAGCGCCTTGAGGTT+AGG | + | chr5_3:2344246-2344265 | None:intergenic | 60.0% | |
| GTTGAACGCGCGTGATGCAC+GGG | - | chr5_3:2345110-2345129 | Msa0791390:intron | 60.0% | |
| CCTCCTAGCTTCAGCTGCAG+TGG | + | chr5_3:2345267-2345286 | None:intergenic | 60.0% | |
| CCACTGCAGCTGAAGCTAGG+AGG | - | chr5_3:2345264-2345283 | Msa0791390:intron | 60.0% | |
| ACATCCGGGAAGCCTCTTGG+AGG | - | chr5_3:2346112-2346131 | Msa0791390:intron | 60.0% | |
| CATCCGGGAAGCCTCTTGGA+GGG | - | chr5_3:2346113-2346132 | Msa0791390:intron | 60.0% | |
| !! | GGGTTTGTTACAGGTGGGCC+CGG | + | chr5_3:2346674-2346693 | None:intergenic | 60.0% |
| TCACTGGCGGTGGCATGACT+TGG | + | chr5_3:2346731-2346750 | None:intergenic | 60.0% | |
| CTAAGTGAAGATCCGCGGCG+TGG | - | chr5_3:2346813-2346832 | Msa0791390:intron | 60.0% | |
| GCAGTACTTAGACCGACCCG+GGG | - | chr5_3:2347248-2347267 | Msa0791390:CDS | 60.0% | |
| ! | GCATCGGCATGGCATCCTGA+TGG | - | chr5_3:2349712-2349731 | Msa0791390:CDS | 60.0% |
| ! | GGTGAAGGTGCAGCGCCTTG+AGG | + | chr5_3:2344251-2344270 | None:intergenic | 65.0% |
| !! | TTTCGTGGCGGGAGAGCGCT+TGG | - | chr5_3:2344826-2344845 | Msa0791390:CDS | 65.0% |
| ATCCGCGGCGTGGCTATCCA+TGG | - | chr5_3:2346823-2346842 | Msa0791390:intron | 65.0% | |
| CACCATGGATAGCCACGCCG+CGG | + | chr5_3:2346828-2346847 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 2344157 | 2350379 | 2344157 | ID=Msa0791390;Name=Msa0791390 |
| chr5_3 | mRNA | 2344157 | 2350379 | 2344157 | ID=Msa0791390-mRNA-1;Parent=Msa0791390;Name=Msa0791390-mRNA-1;_AED=0.10;_eAED=0.10;_QI=163|1|1|1|0.88|0.8|10|296|447 |
| chr5_3 | exon | 2344157 | 2344863 | 2344157 | ID=Msa0791390-mRNA-1:exon:1020;Parent=Msa0791390-mRNA-1 |
| chr5_3 | exon | 2344973 | 2345059 | 2344973 | ID=Msa0791390-mRNA-1:exon:1019;Parent=Msa0791390-mRNA-1 |
| chr5_3 | exon | 2346952 | 2347057 | 2346952 | ID=Msa0791390-mRNA-1:exon:1018;Parent=Msa0791390-mRNA-1 |
| chr5_3 | exon | 2347193 | 2347284 | 2347193 | ID=Msa0791390-mRNA-1:exon:1017;Parent=Msa0791390-mRNA-1 |
| chr5_3 | exon | 2348316 | 2348426 | 2348316 | ID=Msa0791390-mRNA-1:exon:1016;Parent=Msa0791390-mRNA-1 |
| chr5_3 | exon | 2348505 | 2348639 | 2348505 | ID=Msa0791390-mRNA-1:exon:1015;Parent=Msa0791390-mRNA-1 |
| chr5_3 | exon | 2348931 | 2349017 | 2348931 | ID=Msa0791390-mRNA-1:exon:1014;Parent=Msa0791390-mRNA-1 |
| chr5_3 | exon | 2349124 | 2349291 | 2349124 | ID=Msa0791390-mRNA-1:exon:1013;Parent=Msa0791390-mRNA-1 |
| chr5_3 | exon | 2349642 | 2349817 | 2349642 | ID=Msa0791390-mRNA-1:exon:1012;Parent=Msa0791390-mRNA-1 |
| chr5_3 | exon | 2350246 | 2350379 | 2350246 | ID=Msa0791390-mRNA-1:exon:1011;Parent=Msa0791390-mRNA-1 |
| chr5_3 | five_prime_UTR | 2350246 | 2350379 | 2350246 | ID=Msa0791390-mRNA-1:five_prime_utr;Parent=Msa0791390-mRNA-1 |
| chr5_3 | five_prime_UTR | 2349789 | 2349817 | 2349789 | ID=Msa0791390-mRNA-1:five_prime_utr;Parent=Msa0791390-mRNA-1 |
| chr5_3 | CDS | 2349642 | 2349788 | 2349642 | ID=Msa0791390-mRNA-1:cds;Parent=Msa0791390-mRNA-1 |
| chr5_3 | CDS | 2349124 | 2349291 | 2349124 | ID=Msa0791390-mRNA-1:cds;Parent=Msa0791390-mRNA-1 |
| chr5_3 | CDS | 2348931 | 2349017 | 2348931 | ID=Msa0791390-mRNA-1:cds;Parent=Msa0791390-mRNA-1 |
| chr5_3 | CDS | 2348505 | 2348639 | 2348505 | ID=Msa0791390-mRNA-1:cds;Parent=Msa0791390-mRNA-1 |
| chr5_3 | CDS | 2348316 | 2348426 | 2348316 | ID=Msa0791390-mRNA-1:cds;Parent=Msa0791390-mRNA-1 |
| chr5_3 | CDS | 2347193 | 2347284 | 2347193 | ID=Msa0791390-mRNA-1:cds;Parent=Msa0791390-mRNA-1 |
| chr5_3 | CDS | 2346952 | 2347057 | 2346952 | ID=Msa0791390-mRNA-1:cds;Parent=Msa0791390-mRNA-1 |
| chr5_3 | CDS | 2344973 | 2345059 | 2344973 | ID=Msa0791390-mRNA-1:cds;Parent=Msa0791390-mRNA-1 |
| chr5_3 | CDS | 2344453 | 2344863 | 2344453 | ID=Msa0791390-mRNA-1:cds;Parent=Msa0791390-mRNA-1 |
| chr5_3 | three_prime_UTR | 2344157 | 2344452 | 2344157 | ID=Msa0791390-mRNA-1:three_prime_utr;Parent=Msa0791390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
