AlfalfaGEDB | Msa0525770

M. sativa cultivar zhongmu-4 / Msa0525770

KEGG: -
GO: -
PFAM: PF00400.35

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0525770	XP_003594386.1	99.105	447	4	0	1	447	1	447	0.0	930

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0525770	sp\|Q9Y7K5\|YGI3_SCHPO	28.836	378	236	13	66	437	66	416	7.50e-35	137

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0525770	G7ISQ5	99.105	447	4	0	1	447	1	447	0.0	930

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0077370	Msa0525770	0.807539	4.812266e-50	-8.615850e-47
Msa0082420	Msa0525770	0.801884	7.294825e-49	-8.615850e-47
Msa0110220	Msa0525770	0.810450	1.145528e-50	-8.615850e-47
Msa0117520	Msa0525770	0.804189	2.433996e-49	-8.615850e-47
Msa0163510	Msa0525770	0.800683	1.284412e-48	-8.615850e-47
Msa0168310	Msa0525770	0.808764	2.638251e-50	-8.615850e-47
Msa0189530	Msa0525770	0.802247	6.142980e-49	-8.615850e-47
Msa0231800	Msa0525770	0.807197	5.686763e-50	-8.615850e-47
Msa0277960	Msa0525770	0.957144	5.499015e-115	-8.615850e-47
Msa0525770	Msa0528990	0.821865	3.215861e-53	-8.615850e-47

Showing 1 to 10 of 26 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0525770	MtrunA17_Chr2g0291111	99.105	447	4	0	1	447	1	447	0.0	930
Msa0525770	MtrunA17_Chr3g0079951	73.649	444	117	0	4	447	3	446	0.0	696
Msa0525770	MtrunA17_Chr3g0080001	66.059	439	138	4	1	437	1	430	0.0	613
Msa0525770	MtrunA17_Chr7g0222331	68.159	402	127	1	44	445	37	437	0.0	596
Msa0525770	MtrunA17_Chr3g0115611	59.045	398	161	2	51	447	61	457	1.25e-177	504
Msa0525770	MtrunA17_Chr4g0067151	26.744	172	116	4	281	443	81	251	3.83e-12	67.0

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0525770	AT3G13340.1	73.214	448	113	3	1	445	1	444	694
Msa0525770	AT3G13340.3	73.214	448	113	3	1	445	1	444	694
Msa0525770	AT3G13340.2	73.214	448	113	3	1	445	1	444	694
Msa0525770	AT1G55680.1	71.910	445	122	1	1	445	1	442	687
Msa0525770	AT5G56190.2	69.556	450	130	3	1	447	1	446	664
Msa0525770	AT5G56190.6	69.556	450	130	3	1	447	1	446	664
Msa0525770	AT5G56190.4	69.556	450	130	3	1	447	1	446	664
Msa0525770	AT5G56190.5	69.556	450	130	3	1	447	1	446	664
Msa0525770	AT5G56190.3	70.387	439	125	2	10	447	6	440	658
Msa0525770	AT5G56190.1	70.387	439	125	2	10	447	6	440	658

Showing 1 to 10 of 20 entries

Previous1 2Next

Find 141 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGGCTTGAGGATGT+TGG	0.557034	3_4:-79384177	Msa0525770:three_prime_UTR
AAACAATGATGGTGGAATCA+GGG	0.554650	3_4:-79386893	Msa0525770:CDS
AAACATGGCTTGAGGATGTT+GGG	0.443968	3_4:-79384176	Msa0525770:three_prime_UTR
AAACCCTCCAAGAGGCTTCC+CGG	0.396154	3_4:+79388280	None:intergenic
AAAGTCTGTTGCTGTTCTTA+AGG	0.371400	3_4:-79384598	Msa0525770:CDS
AAATACTAGACAAAAGTACA+TGG	0.641672	3_4:+79384286	None:intergenic
AACAAAAGCTAACCCCGGGT+CGG	0.654067	3_4:+79387136	None:intergenic
AACATGGCTTGAGGATGTTG+GGG	0.633707	3_4:-79384175	Msa0525770:three_prime_UTR
AAGATAAAACATGCCGCATT+TGG	0.295126	3_4:-79384638	Msa0525770:CDS
AAGGGAAGTAGAAAGAAGAA+AGG	0.562761	3_4:-79384228	Msa0525770:three_prime_UTR

Showing 1 to 10 of 141 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCGAATTCAAACTGTAACAA+AGG	+	chr3_4:79384811-79384830	None:intergenic	30.0%
TGAAAATATACCACAATCTG+GGG	-	chr3_4:79385258-79385277	Msa0525770:intron	30.0%
AGTGCAAAGTAACACAAAAA+GGG	-	chr3_4:79385402-79385421	Msa0525770:intron	30.0%
CATCTTCAGACAATATAACA+TGG	+	chr3_4:79385565-79385584	None:intergenic	30.0%
TATCACGAGACAATATAACA+TGG	+	chr3_4:79385613-79385632	None:intergenic	30.0%
CAATTTGTGCAACAAAAGTA+GGG	+	chr3_4:79386833-79386852	None:intergenic	30.0%
AGGAAATAAAAGAAAGACCT+GGG	+	chr3_4:79387224-79387243	None:intergenic	30.0%
AAGGAAATAAAAGAAAGACC+TGG	+	chr3_4:79387225-79387244	None:intergenic	30.0%
GAAAAAAAGAAGGGGAAAAA+AGG	+	chr3_4:79387244-79387263	None:intergenic	30.0%
TTTGAATTTGCCAAAAATCC+TGG	+	chr3_4:79387570-79387589	None:intergenic	30.0%

Showing 1 to 10 of 398 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	79384039	79390261	79384039	ID=Msa0525770;Name=Msa0525770
chr3_4	mRNA	79384039	79390261	79384039	ID=Msa0525770-mRNA-1;Parent=Msa0525770;Name=Msa0525770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=163\|1\|1\|1\|0.88\|0.8\|10\|296\|447
chr3_4	exon	79384039	79384745	79384039	ID=Msa0525770-mRNA-1:exon:23797;Parent=Msa0525770-mRNA-1
chr3_4	exon	79384855	79384941	79384855	ID=Msa0525770-mRNA-1:exon:23796;Parent=Msa0525770-mRNA-1
chr3_4	exon	79386834	79386939	79386834	ID=Msa0525770-mRNA-1:exon:23795;Parent=Msa0525770-mRNA-1
chr3_4	exon	79387075	79387166	79387075	ID=Msa0525770-mRNA-1:exon:23794;Parent=Msa0525770-mRNA-1
chr3_4	exon	79388198	79388308	79388198	ID=Msa0525770-mRNA-1:exon:23793;Parent=Msa0525770-mRNA-1
chr3_4	exon	79388387	79388521	79388387	ID=Msa0525770-mRNA-1:exon:23792;Parent=Msa0525770-mRNA-1
chr3_4	exon	79388813	79388899	79388813	ID=Msa0525770-mRNA-1:exon:23791;Parent=Msa0525770-mRNA-1
chr3_4	exon	79389006	79389173	79389006	ID=Msa0525770-mRNA-1:exon:23790;Parent=Msa0525770-mRNA-1
chr3_4	exon	79389524	79389699	79389524	ID=Msa0525770-mRNA-1:exon:23789;Parent=Msa0525770-mRNA-1
chr3_4	exon	79390128	79390261	79390128	ID=Msa0525770-mRNA-1:exon:23788;Parent=Msa0525770-mRNA-1
chr3_4	five_prime_UTR	79390128	79390261	79390128	ID=Msa0525770-mRNA-1:five_prime_utr;Parent=Msa0525770-mRNA-1
chr3_4	five_prime_UTR	79389671	79389699	79389671	ID=Msa0525770-mRNA-1:five_prime_utr;Parent=Msa0525770-mRNA-1
chr3_4	CDS	79389524	79389670	79389524	ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1
chr3_4	CDS	79389006	79389173	79389006	ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1
chr3_4	CDS	79388813	79388899	79388813	ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1
chr3_4	CDS	79388387	79388521	79388387	ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1
chr3_4	CDS	79388198	79388308	79388198	ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1
chr3_4	CDS	79387075	79387166	79387075	ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1
chr3_4	CDS	79386834	79386939	79386834	ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1
chr3_4	CDS	79384855	79384941	79384855	ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1
chr3_4	CDS	79384335	79384745	79384335	ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1
chr3_4	three_prime_UTR	79384039	79384334	79384039	ID=Msa0525770-mRNA-1:three_prime_utr;Parent=Msa0525770-mRNA-1

Gene Sequence

>Msa0525770

ATGGCTCAATACCATGGGGATGAAATGGAGTATGTTCAAGATGATAATGAGATGGCTGAGGTTGATGATGATATGTATTTTCGTGGCGGGAGAGCGCTTGGTGAATCTGATACTGATGAGGATGACGACGATGAATATGATCCTTTGGAAAACCGAATAACAGATACCACTGCAGCTGAAGCTAGGAGGGGAAAGGATATTCAAGGTATACCTTGGGATAGGCTGAGCATTACTCGTGAGAAATATCGAGAAACAAGACTCGAGCAGTACAAAAACTATGAAAATATACCACAATCTGGGGAACTGTCAGAGAAGGAGTGCAAAGTAACACAAAAAGGGGGATTGTATTACGATTTCTGGCAAAACACAAGATCCGTGAAGTCAACAATACTTCATTTCCAACTGAGAAACTTAGTTTGGTCAACATCAAAACATGATGTATATCTTGTTGCACATTACTCAATTGTTCACTGGTCTTCATTAAGTTCGAAGAGATCTGAAGTTCTCAATGTATCAGGGCATGTTGCTCCATGTGAGAAACATCCGGGAAGCCTCTTGGAGGGTTTTACTCAGACACAAATTAGTACACTGGCTGTACGTGATAACTTGTTGATTGCTGGGGGTTTTCAAGGAGAGCTTATTTGCAAGTACTTAGACCGACCCGGGGTTAGCTTTTGTTCTCGAACTACGTATGAGGACAATGCGATCACAAATGCTGTTGAGATTTATGAGCATCCCAGTGGAGCTGTACATTTCATGGCTTCAAACAATGATGGTGGAATCAGGGACTTTGATATGGAGACATTTCAGCTTACGAAGCATTCATGCTTTCCTTGGCCAGTAAATCATACTTCATTAAGCCCTAATGGGAAACAACTTGTAATTGTTGGAGACAACCCAGATGGTTTACTGGTGGATGCTCAAACTGGAAAGACTATTGCACCTCTATGCGGACACTTGGATTATTCATTTGCATCGGCATGGCATCCTGATGGTTTCATTTTTGCCACTGGGAACCAAGATAAAACATGCCGCATTTGGGATGTTCGGAATCTTTCAAAGTCTGTTGCTGTTCTTAAGGGGAACCTTGGAGCTATACGCTCAATACGCTTCACATCTGATGGGCGGTATATGGCAATGGCTGAGCCAGCTGACTTTGTGCATGTCTATGATGCAAAGCAAGGATTTGAAAAGGAGCAAGAGATCGATTTTTTTGGAGAGGTCTCAGGCGTATCTTTTAGCCCTGACACAGAGTCGCTTTTTATTGGTGTATGGGATCGTACCTATGGAAGTCTTCTTCAGTTCAATCGACACCGAAACTATACCTATCTTGATTACTTGTAA

Protein sequence

>Msa0525770

MAQYHGDEMEYVQDDNEMAEVDDDMYFRGGRALGESDTDEDDDDEYDPLENRITDTTAAEARRGKDIQGIPWDRLSITREKYRETRLEQYKNYENIPQSGELSEKECKVTQKGGLYYDFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVAHYSIVHWSSLSSKRSEVLNVSGHVAPCEKHPGSLLEGFTQTQISTLAVRDNLLIAGGFQGELICKYLDRPGVSFCSRTTYEDNAITNAVEIYEHPSGAVHFMASNNDGGIRDFDMETFQLTKHSCFPWPVNHTSLSPNGKQLVIVGDNPDGLLVDAQTGKTIAPLCGHLDYSFASAWHPDGFIFATGNQDKTCRIWDVRNLSKSVAVLKGNLGAIRSIRFTSDGRYMAMAEPADFVHVYDAKQGFEKEQEIDFFGEVSGVSFSPDTESLFIGVWDRTYGSLLQFNRHRNYTYLDYL*