Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525770 | XP_003594386.1 | 99.105 | 447 | 4 | 0 | 1 | 447 | 1 | 447 | 0.0 | 930 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525770 | sp|Q9Y7K5|YGI3_SCHPO | 28.836 | 378 | 236 | 13 | 66 | 437 | 66 | 416 | 7.50e-35 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525770 | G7ISQ5 | 99.105 | 447 | 4 | 0 | 1 | 447 | 1 | 447 | 0.0 | 930 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0077370 | Msa0525770 | 0.807539 | 4.812266e-50 | -8.615850e-47 |
| Msa0082420 | Msa0525770 | 0.801884 | 7.294825e-49 | -8.615850e-47 |
| Msa0110220 | Msa0525770 | 0.810450 | 1.145528e-50 | -8.615850e-47 |
| Msa0117520 | Msa0525770 | 0.804189 | 2.433996e-49 | -8.615850e-47 |
| Msa0163510 | Msa0525770 | 0.800683 | 1.284412e-48 | -8.615850e-47 |
| Msa0168310 | Msa0525770 | 0.808764 | 2.638251e-50 | -8.615850e-47 |
| Msa0189530 | Msa0525770 | 0.802247 | 6.142980e-49 | -8.615850e-47 |
| Msa0231800 | Msa0525770 | 0.807197 | 5.686763e-50 | -8.615850e-47 |
| Msa0277960 | Msa0525770 | 0.957144 | 5.499015e-115 | -8.615850e-47 |
| Msa0525770 | Msa0528990 | 0.821865 | 3.215861e-53 | -8.615850e-47 |
| Msa0525770 | Msa0603230 | 0.804152 | 2.477800e-49 | -8.615850e-47 |
| Msa0525770 | Msa0791390 | 0.992349 | 9.302300e-193 | -8.615850e-47 |
| Msa0525770 | Msa0803640 | 0.800304 | 1.534459e-48 | -8.615850e-47 |
| Msa0525770 | Msa0943970 | 0.811491 | 6.818265e-51 | -8.615850e-47 |
| Msa0525770 | Msa0944020 | 0.807177 | 5.740848e-50 | -8.615850e-47 |
| Msa0525770 | Msa0982090 | -0.803008 | 4.278168e-49 | -8.615850e-47 |
| Msa0525770 | Msa1047760 | 0.812010 | 5.257518e-51 | -8.615850e-47 |
| Msa0525770 | Msa1213890 | 0.804667 | 1.935493e-49 | -8.615850e-47 |
| Msa0525770 | Msa1218620 | 0.818099 | 2.338790e-52 | -8.615850e-47 |
| Msa0525770 | Msa1224170 | 0.819933 | 8.952836e-53 | -8.615850e-47 |
| Msa0525770 | Msa1263430 | 0.807885 | 4.062167e-50 | -8.615850e-47 |
| Msa0525770 | Msa1382380 | -0.800350 | 1.502189e-48 | -8.615850e-47 |
| Msa0525770 | Msa1387680 | 0.816877 | 4.407761e-52 | -8.615850e-47 |
| Msa0525770 | Msa1407370 | 0.818807 | 1.616522e-52 | -8.615850e-47 |
| Msa0525770 | Msa1410800 | 0.822041 | 2.928092e-53 | -8.615850e-47 |
| Msa0525770 | Msa1411250 | 0.833344 | 5.629936e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525770 | MtrunA17_Chr2g0291111 | 99.105 | 447 | 4 | 0 | 1 | 447 | 1 | 447 | 0.0 | 930 |
| Msa0525770 | MtrunA17_Chr3g0079951 | 73.649 | 444 | 117 | 0 | 4 | 447 | 3 | 446 | 0.0 | 696 |
| Msa0525770 | MtrunA17_Chr3g0080001 | 66.059 | 439 | 138 | 4 | 1 | 437 | 1 | 430 | 0.0 | 613 |
| Msa0525770 | MtrunA17_Chr7g0222331 | 68.159 | 402 | 127 | 1 | 44 | 445 | 37 | 437 | 0.0 | 596 |
| Msa0525770 | MtrunA17_Chr3g0115611 | 59.045 | 398 | 161 | 2 | 51 | 447 | 61 | 457 | 1.25e-177 | 504 |
| Msa0525770 | MtrunA17_Chr4g0067151 | 26.744 | 172 | 116 | 4 | 281 | 443 | 81 | 251 | 3.83e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525770 | AT3G13340.1 | 73.214 | 448 | 113 | 3 | 1 | 445 | 1 | 444 | 0.0 | 694 |
| Msa0525770 | AT3G13340.3 | 73.214 | 448 | 113 | 3 | 1 | 445 | 1 | 444 | 0.0 | 694 |
| Msa0525770 | AT3G13340.2 | 73.214 | 448 | 113 | 3 | 1 | 445 | 1 | 444 | 0.0 | 694 |
| Msa0525770 | AT1G55680.1 | 71.910 | 445 | 122 | 1 | 1 | 445 | 1 | 442 | 0.0 | 687 |
| Msa0525770 | AT5G56190.2 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa0525770 | AT5G56190.6 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa0525770 | AT5G56190.4 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa0525770 | AT5G56190.5 | 69.556 | 450 | 130 | 3 | 1 | 447 | 1 | 446 | 0.0 | 664 |
| Msa0525770 | AT5G56190.3 | 70.387 | 439 | 125 | 2 | 10 | 447 | 6 | 440 | 0.0 | 658 |
| Msa0525770 | AT5G56190.1 | 70.387 | 439 | 125 | 2 | 10 | 447 | 6 | 440 | 0.0 | 658 |
| Msa0525770 | AT5G56190.7 | 70.387 | 439 | 125 | 2 | 10 | 447 | 27 | 461 | 0.0 | 655 |
| Msa0525770 | AT1G78070.1 | 55.679 | 449 | 196 | 2 | 1 | 447 | 1 | 448 | 2.36e-179 | 509 |
| Msa0525770 | AT1G36070.1 | 55.583 | 412 | 177 | 3 | 37 | 445 | 7 | 415 | 4.72e-172 | 489 |
| Msa0525770 | AT1G36070.2 | 55.610 | 410 | 178 | 3 | 40 | 445 | 5 | 414 | 1.07e-171 | 488 |
| Msa0525770 | AT1G36070.4 | 56.456 | 395 | 169 | 2 | 54 | 445 | 3 | 397 | 3.27e-170 | 484 |
| Msa0525770 | AT1G78070.2 | 57.057 | 333 | 142 | 1 | 115 | 447 | 7 | 338 | 5.42e-145 | 417 |
| Msa0525770 | AT1G78070.3 | 59.306 | 317 | 129 | 0 | 131 | 447 | 23 | 339 | 5.92e-144 | 415 |
| Msa0525770 | AT1G36070.3 | 55.102 | 294 | 132 | 0 | 152 | 445 | 3 | 296 | 1.08e-126 | 369 |
| Msa0525770 | AT1G36070.5 | 55.102 | 294 | 132 | 0 | 152 | 445 | 3 | 296 | 1.08e-126 | 369 |
| Msa0525770 | AT3G49660.1 | 27.517 | 149 | 106 | 2 | 281 | 428 | 74 | 221 | 2.40e-11 | 65.1 |
Find 141 sgRNAs with CRISPR-Local
Find 398 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGGATTGTATTACGATTTC+TGG | 0.130313 | 3_4:-79388855 | Msa0525770:CDS |
| TCTGAAGTTCTCAATGTATC+AGG | 0.276261 | 3_4:-79388406 | Msa0525770:CDS |
| GTAGAATGGCTTACATTTAC+TGG | 0.277210 | 3_4:+79386820 | None:intergenic |
| GAGTGCAAAGTAACACAAAA+AGG | 0.280473 | 3_4:-79388877 | Msa0525770:CDS |
| ATTACAAGTTGTTTCCCATT+AGG | 0.291190 | 3_4:+79384904 | None:intergenic |
| AAGATAAAACATGCCGCATT+TGG | 0.295126 | 3_4:-79384638 | Msa0525770:CDS |
| CACATCTGATGGGCGGTATA+TGG | 0.306053 | 3_4:-79384544 | Msa0525770:CDS |
| CAGTGGAGCTGTACATTTCA+TGG | 0.316630 | 3_4:-79386920 | Msa0525770:CDS |
| CTGCAGTGGTATCTGTTATT+CGG | 0.324070 | 3_4:+79389146 | None:intergenic |
| CAAACAATGATGGTGGAATC+AGG | 0.329381 | 3_4:-79386894 | Msa0525770:CDS |
| TAGGGTTTGTTCTGGATCTC+AGG | 0.330252 | 3_4:+79390172 | None:intergenic |
| CGTGATAACTTGTTGATTGC+TGG | 0.331239 | 3_4:-79388226 | Msa0525770:CDS |
| AGGTGCAGCGCCTTGAGGTT+AGG | 0.334060 | 3_4:+79390153 | None:intergenic |
| CATACTTCATTAAGCCCTAA+TGG | 0.339680 | 3_4:-79384919 | Msa0525770:CDS |
| TATGAAAATATACCACAATC+TGG | 0.344776 | 3_4:-79389022 | Msa0525770:CDS |
| AGACAACCCAGATGGTTTAC+TGG | 0.344951 | 3_4:-79384875 | Msa0525770:CDS |
| TTACAAGTTGTTTCCCATTA+GGG | 0.345847 | 3_4:+79384905 | None:intergenic |
| CTTGAGGTTAGGGTTTGTTC+TGG | 0.360436 | 3_4:+79390164 | None:intergenic |
| CGACGATGAATATGATCCTT+TGG | 0.365677 | 3_4:-79389523 | Msa0525770:intron |
| AAAGTCTGTTGCTGTTCTTA+AGG | 0.371400 | 3_4:-79384598 | Msa0525770:CDS |
| AAGTCTGTTGCTGTTCTTAA+GGG | 0.372378 | 3_4:-79384597 | Msa0525770:CDS |
| CGAAGCATTCATGCTTTCCT+TGG | 0.373023 | 3_4:-79386843 | Msa0525770:CDS |
| GGTGCAGCGCCTTGAGGTTA+GGG | 0.380631 | 3_4:+79390154 | None:intergenic |
| TGCAGCTGAGAAACTTAGTT+TGG | 0.385464 | 3_4:-79388504 | Msa0525770:intron |
| GGGAAACAACTTGTAATTGT+TGG | 0.386167 | 3_4:-79384898 | Msa0525770:CDS |
| CCAATCCCCAACACAGAATC+AGG | 0.390571 | 3_4:-79390127 | Msa0525770:intron |
| AAACCCTCCAAGAGGCTTCC+CGG | 0.396154 | 3_4:+79388280 | None:intergenic |
| CCTGATTCTGTGTTGGGGAT+TGG | 0.410269 | 3_4:+79390127 | None:intergenic |
| CACATTACTCAATTGTTCAC+TGG | 0.413639 | 3_4:-79388450 | Msa0525770:CDS |
| TGGAATCAGGGACTTTGATA+TGG | 0.416103 | 3_4:-79386881 | Msa0525770:CDS |
| GAATTGCGATGAAGCAGATT+TGG | 0.418964 | 3_4:+79390225 | None:intergenic |
| TTTCTTCTTTCTACTTCCCT+TGG | 0.428627 | 3_4:+79384230 | None:intergenic |
| TTGTTCTCGAACTACGTATG+AGG | 0.432983 | 3_4:-79387118 | Msa0525770:CDS |
| AGATAAAACATGCCGCATTT+GGG | 0.435179 | 3_4:-79384637 | Msa0525770:CDS |
| TGGTGACCTGATTCTGTGTT+GGG | 0.435677 | 3_4:+79390121 | None:intergenic |
| CATGCCGCATTTGGGATGTT+CGG | 0.441423 | 3_4:-79384629 | Msa0525770:CDS |
| AAACATGGCTTGAGGATGTT+GGG | 0.443968 | 3_4:-79384176 | Msa0525770:three_prime_UTR |
| GTTAAATAATAATTAAAGAA+AGG | 0.445489 | 3_4:-79384135 | Msa0525770:three_prime_UTR |
| TGTTCTGGATCTCAGGGATA+AGG | 0.445855 | 3_4:+79390179 | None:intergenic |
| TCAATACCATGGGGATGAAA+TGG | 0.455707 | 3_4:-79389643 | Msa0525770:CDS |
| ATACTTCATTAAGCCCTAAT+GGG | 0.456324 | 3_4:-79384918 | Msa0525770:CDS |
| TTACTGGTGGATGCTCAAAC+TGG | 0.459274 | 3_4:-79384859 | Msa0525770:CDS |
| GAAACATCCGGGAAGCCTCT+TGG | 0.460435 | 3_4:-79388287 | Msa0525770:CDS |
| TTAAATAATAATTAAAGAAA+GGG | 0.461364 | 3_4:-79384134 | Msa0525770:three_prime_UTR |
| ATGAAAATATACCACAATCT+GGG | 0.463494 | 3_4:-79389021 | Msa0525770:CDS |
| GTGATAACTTGTTGATTGCT+GGG | 0.466192 | 3_4:-79388225 | Msa0525770:CDS |
| TGCACCTCTATGCGGACACT+TGG | 0.466389 | 3_4:-79384718 | Msa0525770:CDS |
| TCAATACGCTTCACATCTGA+TGG | 0.477657 | 3_4:-79384555 | Msa0525770:CDS |
| GCATCCACCAGTAAACCATC+TGG | 0.480791 | 3_4:+79384868 | None:intergenic |
| TTTCGTGGCGGGAGAGCGCT+TGG | 0.483027 | 3_4:-79389570 | Msa0525770:CDS |
| AATCAAGATAGGTATAGTTT+CGG | 0.485908 | 3_4:+79384343 | None:intergenic |
| AATTTACAAGTAATCAAGAT+AGG | 0.487243 | 3_4:+79384332 | None:intergenic |
| GCTGTTCTTAAGGGGAACCT+TGG | 0.487880 | 3_4:-79384588 | Msa0525770:CDS |
| ATGAAGTATTGTTGACTTCA+CGG | 0.491114 | 3_4:+79388819 | None:intergenic |
| AGGGTTTGTTCTGGATCTCA+GGG | 0.497049 | 3_4:+79390173 | None:intergenic |
| CACTGCAGCTGAAGCTAGGA+GGG | 0.506637 | 3_4:-79389131 | Msa0525770:CDS |
| TTCATGGCTTCAAACAATGA+TGG | 0.511644 | 3_4:-79386904 | Msa0525770:CDS |
| TCTGACAGTTCCCCAGATTG+TGG | 0.511760 | 3_4:+79389010 | None:intergenic |
| AGGATATTCAAGGTATACCT+TGG | 0.520079 | 3_4:-79389105 | Msa0525770:CDS |
| TTGAGATTTATGAGCATCCC+AGG | 0.524294 | 3_4:-79387074 | Msa0525770:intron |
| TGCAGTACTTAGACCGACCC+GGG | 0.525488 | 3_4:-79387149 | Msa0525770:intron |
| CCTCCTAGCTTCAGCTGCAG+TGG | 0.526982 | 3_4:+79389132 | None:intergenic |
| ATAATTAAAGAAAGGGAAGG+AGG | 0.528850 | 3_4:-79384127 | Msa0525770:three_prime_UTR |
| GGTGTATGGGATCGTACCTA+TGG | 0.529375 | 3_4:-79384390 | Msa0525770:CDS |
| ATACCACTGCAGCTGAAGCT+AGG | 0.532089 | 3_4:-79389135 | Msa0525770:CDS |
| GGATATTCAAGGTATACCTT+GGG | 0.533298 | 3_4:-79389104 | Msa0525770:CDS |
| TGCAAAGCAAGGATTTGAAA+AGG | 0.535038 | 3_4:-79384484 | Msa0525770:CDS |
| CGGAACATGGCTCAATACCA+TGG | 0.536161 | 3_4:-79389654 | Msa0525770:exon |
| CTTGGATTATTCATTTGCAT+CGG | 0.538168 | 3_4:-79384700 | Msa0525770:CDS |
| TCTTTAATTATTATTTAACA+TGG | 0.541092 | 3_4:+79384139 | None:intergenic |
| TCTGTGTTGGGGATTGGTGA+AGG | 0.541497 | 3_4:+79390133 | None:intergenic |
| TCAAGGAGAGCTTATTTGCA+AGG | 0.543023 | 3_4:-79388197 | Msa0525770:intron |
| GTGTTGCTAACAGAAACATC+CGG | 0.547014 | 3_4:-79388299 | Msa0525770:intron |
| ATGGTGACCTGATTCTGTGT+TGG | 0.550430 | 3_4:+79390120 | None:intergenic |
| GCATCGGCATGGCATCCTGA+TGG | 0.554082 | 3_4:-79384684 | Msa0525770:CDS |
| AAACAATGATGGTGGAATCA+GGG | 0.554650 | 3_4:-79386893 | Msa0525770:CDS |
| TGGCTTACATTTACTGGCCA+AGG | 0.556085 | 3_4:+79386826 | None:intergenic |
| AAAACATGGCTTGAGGATGT+TGG | 0.557034 | 3_4:-79384177 | Msa0525770:three_prime_UTR |
| ACATCCGGGAAGCCTCTTGG+AGG | 0.557479 | 3_4:-79388284 | Msa0525770:CDS |
| TGAAATTGATAGATATCAAG+TGG | 0.560978 | 3_4:-79389689 | Msa0525770:intron |
| AGGAGGGGAAAGGATATTCA+AGG | 0.561263 | 3_4:-79389115 | Msa0525770:CDS |
| AAGGGAAGTAGAAAGAAGAA+AGG | 0.562761 | 3_4:-79384228 | Msa0525770:three_prime_UTR |
| TAATTAAAGAAAGGGAAGGA+GGG | 0.565551 | 3_4:-79384126 | Msa0525770:three_prime_UTR |
| GACAGTATTTATATTACCAA+GGG | 0.566044 | 3_4:-79384246 | Msa0525770:three_prime_UTR |
| ATTATTCATTTGCATCGGCA+TGG | 0.572987 | 3_4:-79384695 | Msa0525770:CDS |
| GGAACATGGCTCAATACCAT+GGG | 0.574129 | 3_4:-79389653 | Msa0525770:exon |
| GTGAACTGTACCGCGGAACA+TGG | 0.575202 | 3_4:-79389667 | Msa0525770:exon |
| TAGACATGCACAAAGTCAGC+TGG | 0.575901 | 3_4:+79384510 | None:intergenic |
| TGACAGTATTTATATTACCA+AGG | 0.578605 | 3_4:-79384247 | Msa0525770:three_prime_UTR |
| AGAAGAAAGGTGAACTGACA+TGG | 0.580682 | 3_4:-79384215 | Msa0525770:three_prime_UTR |
| ATGGCTTCAAACAATGATGG+TGG | 0.583087 | 3_4:-79386901 | Msa0525770:CDS |
| CATCCGGGAAGCCTCTTGGA+GGG | 0.591045 | 3_4:-79388283 | Msa0525770:CDS |
| AGTCTGTTGCTGTTCTTAAG+GGG | 0.593366 | 3_4:-79384596 | Msa0525770:CDS |
| CTGAAGTTCTCAATGTATCA+GGG | 0.594254 | 3_4:-79388405 | Msa0525770:CDS |
| TGAAAATATACCACAATCTG+GGG | 0.594686 | 3_4:-79389020 | Msa0525770:CDS |
| CCACTGCAGCTGAAGCTAGG+AGG | 0.595739 | 3_4:-79389132 | Msa0525770:CDS |
| AGCTGAAGCTAGGAGGGGAA+AGG | 0.598359 | 3_4:-79389125 | Msa0525770:CDS |
| GGTGAAGGTGCAGCGCCTTG+AGG | 0.600594 | 3_4:+79390148 | None:intergenic |
| CGAGAACAAAAGCTAACCCC+GGG | 0.608346 | 3_4:+79387132 | None:intergenic |
| ATAATAATTAAAGAAAGGGA+AGG | 0.609438 | 3_4:-79384130 | Msa0525770:three_prime_UTR |
| TTCAAGGTATACCTTGGGAT+AGG | 0.609582 | 3_4:-79389099 | Msa0525770:CDS |
| ATCTGGGGAACTGTCAGAGA+AGG | 0.611294 | 3_4:-79389005 | Msa0525770:intron |
| GAACTGAAGAAGACTTCCAT+AGG | 0.612333 | 3_4:+79384374 | None:intergenic |
| TTGCAGTACTTAGACCGACC+CGG | 0.612988 | 3_4:-79387150 | Msa0525770:intron |
| GCACAAATTATTACCTCACA+TGG | 0.613998 | 3_4:+79388373 | None:intergenic |
| CATCCACCAGTAAACCATCT+GGG | 0.614282 | 3_4:+79384869 | None:intergenic |
| TGATAACTTGTTGATTGCTG+GGG | 0.614938 | 3_4:-79388224 | Msa0525770:CDS |
| TGTTGCTAACAGAAACATCC+GGG | 0.615478 | 3_4:-79388298 | Msa0525770:intron |
| GGTGGATGCTCAAACTGGAA+AGG | 0.616996 | 3_4:-79384854 | Msa0525770:intron |
| CATACTCCATTTCATCCCCA+TGG | 0.617585 | 3_4:+79389637 | None:intergenic |
| TGATGGGCGGTATATGGCAA+TGG | 0.618608 | 3_4:-79384538 | Msa0525770:CDS |
| ATTGTTGGAGACAACCCAGA+TGG | 0.621293 | 3_4:-79384883 | Msa0525770:CDS |
| TAATCCAAGTGTCCGCATAG+AGG | 0.626398 | 3_4:+79384714 | None:intergenic |
| CAGAACAAACCCTAACCTCA+AGG | 0.626634 | 3_4:-79390163 | Msa0525770:five_prime_UTR |
| TCGAGAACAAAAGCTAACCC+CGG | 0.626956 | 3_4:+79387131 | None:intergenic |
| CAATACGCTTCACATCTGAT+GGG | 0.630378 | 3_4:-79384554 | Msa0525770:CDS |
| AACATGGCTTGAGGATGTTG+GGG | 0.633707 | 3_4:-79384175 | Msa0525770:three_prime_UTR |
| TCAGACACAAATTAGTACAC+TGG | 0.635185 | 3_4:-79388254 | Msa0525770:CDS |
| CAACCCAGATGGTTTACTGG+TGG | 0.637863 | 3_4:-79384872 | Msa0525770:CDS |
| AAATACTAGACAAAAGTACA+TGG | 0.641672 | 3_4:+79384286 | None:intergenic |
| GGTGACCTGATTCTGTGTTG+GGG | 0.643916 | 3_4:+79390122 | None:intergenic |
| TGGTATTGAGCCATGTTCCG+CGG | 0.647892 | 3_4:+79389657 | None:intergenic |
| TCATCATATAGTGTAAAACA+TGG | 0.649993 | 3_4:-79384191 | Msa0525770:three_prime_UTR |
| GATTCCGAACATCCCAAATG+CGG | 0.650878 | 3_4:+79384625 | None:intergenic |
| TGGTGAATCTGATACTGATG+AGG | 0.652098 | 3_4:-79389550 | Msa0525770:CDS |
| AACAAAAGCTAACCCCGGGT+CGG | 0.654067 | 3_4:+79387136 | None:intergenic |
| AGATGATAATGAGATGGCTG+AGG | 0.660989 | 3_4:-79389610 | Msa0525770:CDS |
| GATAACTTGTTGATTGCTGG+GGG | 0.661769 | 3_4:-79388223 | Msa0525770:CDS |
| AGGGCATGTTGCTCCATGTG+AGG | 0.663284 | 3_4:-79388386 | Msa0525770:intron |
| TACGCTTCACATCTGATGGG+CGG | 0.669620 | 3_4:-79384551 | Msa0525770:CDS |
| ACTGCAGCTGAAGCTAGGAG+GGG | 0.672337 | 3_4:-79389130 | Msa0525770:CDS |
| TGTTCAAGATGATAATGAGA+TGG | 0.677180 | 3_4:-79389616 | Msa0525770:CDS |
| GTATTGAGCGTATAGCTCCA+AGG | 0.677573 | 3_4:+79384571 | None:intergenic |
| CATGTCTATGATGCAAAGCA+AGG | 0.680192 | 3_4:-79384495 | Msa0525770:CDS |
| TCTGAGTAAAACCCTCCAAG+AGG | 0.686637 | 3_4:+79388272 | None:intergenic |
| GTAATGCTCAGCCTATCCCA+AGG | 0.694656 | 3_4:+79389088 | None:intergenic |
| TAGACTATTGCACCTCTATG+CGG | 0.699150 | 3_4:-79384726 | Msa0525770:CDS |
| ATAGTGTAAAACATGGCTTG+AGG | 0.708015 | 3_4:-79384184 | Msa0525770:three_prime_UTR |
| GCAGTACTTAGACCGACCCG+GGG | 0.732422 | 3_4:-79387148 | Msa0525770:intron |
| GAACATGGCTCAATACCATG+GGG | 0.752882 | 3_4:-79389652 | Msa0525770:exon |
| TCAAGTGGTGAACTGTACCG+CGG | 0.762754 | 3_4:-79389674 | Msa0525770:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATATTAATTAAATTAT+CGG | + | chr3_4:79385732-79385751 | None:intergenic | 0.0% |
| !! | GGTAAAAAAATATATATAAA+AGG | + | chr3_4:79386355-79386374 | None:intergenic | 10.0% |
| !! | AAAATATAAGAAAAAAAGAA+GGG | + | chr3_4:79387253-79387272 | None:intergenic | 10.0% |
| !! | TAAAATATAAGAAAAAAAGA+AGG | + | chr3_4:79387254-79387273 | None:intergenic | 10.0% |
| !!! | TTCTTTTTTTCTTATATTTT+AGG | - | chr3_4:79387253-79387272 | Msa0525770:intron | 10.0% |
| !!! | TCTTTTTTTCTTATATTTTA+GGG | - | chr3_4:79387254-79387273 | Msa0525770:intron | 10.0% |
| !! | TAAAAAATAAAATAAAAGAG+GGG | + | chr3_4:79387812-79387831 | None:intergenic | 10.0% |
| !!! | AAGAGTATAAAATATATTTA+CGG | + | chr3_4:79388307-79388326 | None:intergenic | 10.0% |
| !! | AATTAATAGCTAAAAATAAA+TGG | + | chr3_4:79388523-79388542 | None:intergenic | 10.0% |
| !! | AACAATACAAATATTTAAAA+TGG | + | chr3_4:79388682-79388701 | None:intergenic | 10.0% |
| !!! | CTATTTTTAAATATTTGTAT+AGG | + | chr3_4:79388725-79388744 | None:intergenic | 10.0% |
| !! | CTATACAAATATTTAAAAAT+AGG | - | chr3_4:79388723-79388742 | Msa0525770:intron | 10.0% |
| !! | TCTTTAATTATTATTTAACA+TGG | + | chr3_4:79390142-79390161 | None:intergenic | 10.0% |
| !! | GTTAAATAATAATTAAAGAA+AGG | - | chr3_4:79390143-79390162 | Msa0525770:five_prime_UTR | 10.0% |
| !! | AATTAAATTGAATTGAATTG+AGG | + | chr3_4:79384256-79384275 | None:intergenic | 15.0% |
| !!! | CTGAATTTTATAAACTAATT+TGG | - | chr3_4:79384554-79384573 | Msa0525770:CDS | 15.0% |
| !! | ATATCTATCAATTTCATAAA+TGG | + | chr3_4:79384585-79384604 | None:intergenic | 15.0% |
| !!! | AAAGAAAAAAAAAAGGTATA+GGG | + | chr3_4:79385365-79385384 | None:intergenic | 15.0% |
| !!! | AAAAGAAAAAAAAAAGGTAT+AGG | + | chr3_4:79385366-79385385 | None:intergenic | 15.0% |
| !! | TAAAATCAGAAAGTTATAAA+AGG | + | chr3_4:79386468-79386487 | None:intergenic | 15.0% |
| !! | TACTATAACTAAAATCATAT+GGG | + | chr3_4:79386493-79386512 | None:intergenic | 15.0% |
| !! | TTACTATAACTAAAATCATA+TGG | + | chr3_4:79386494-79386513 | None:intergenic | 15.0% |
| !! | AAATATAAGAAAAAAAGAAG+GGG | + | chr3_4:79387252-79387271 | None:intergenic | 15.0% |
| !! | AAAAAATAAAATAAAAGAGG+GGG | + | chr3_4:79387811-79387830 | None:intergenic | 15.0% |
| !! | ATGTAAAAGAAAACATTAAT+TGG | - | chr3_4:79389034-79389053 | Msa0525770:CDS | 15.0% |
| !!! | AATTTTCATATACTAGAATT+GGG | + | chr3_4:79389309-79389328 | None:intergenic | 15.0% |
| !!! | AAATTTTCATATACTAGAAT+TGG | + | chr3_4:79389310-79389329 | None:intergenic | 15.0% |
| !!! | TATTTTACGCAAATTTTGTT+CGG | - | chr3_4:79384323-79384342 | Msa0525770:exon | 20.0% |
| !! | TTGAATGACATTTGTATTAT+TGG | - | chr3_4:79384918-79384937 | Msa0525770:CDS | 20.0% |
| !! | AGAGAGAAAAGAAAAAAAAA+AGG | + | chr3_4:79385372-79385391 | None:intergenic | 20.0% |
| !! | TAATTAAGAATTAACGTACT+TGG | + | chr3_4:79385487-79385506 | None:intergenic | 20.0% |
| !! | CTTCAAATGATTAAACTAAA+AGG | + | chr3_4:79385514-79385533 | None:intergenic | 20.0% |
| !! | ATGTATTAACTAGATTTAGA+TGG | + | chr3_4:79385704-79385723 | None:intergenic | 20.0% |
| !! | GAAGAAAATTACAAGTAAAT+AGG | + | chr3_4:79386111-79386130 | None:intergenic | 20.0% |
| !! | ACATACACAATTATACATAT+GGG | + | chr3_4:79386413-79386432 | None:intergenic | 20.0% |
| !! | TACATACACAATTATACATA+TGG | + | chr3_4:79386414-79386433 | None:intergenic | 20.0% |
| !! | TACATACACAATTATACATA+AGG | + | chr3_4:79386414-79386433 | None:intergenic | 20.0% |
| !! | ATAAAAAGTTCATGTGATAA+GGG | + | chr3_4:79386530-79386549 | None:intergenic | 20.0% |
| !!! | TTCTAAACAGTAAAGTATTA+GGG | + | chr3_4:79386576-79386595 | None:intergenic | 20.0% |
| !!! | TTTCTAAACAGTAAAGTATT+AGG | + | chr3_4:79386577-79386596 | None:intergenic | 20.0% |
| !!! | AACAATTTGTTTTTGAGATA+CGG | - | chr3_4:79387006-79387025 | Msa0525770:intron | 20.0% |
| !!! | AGAACTACTTAATTATGTTT+TGG | - | chr3_4:79387732-79387751 | Msa0525770:intron | 20.0% |
| !! | AAGAAATTCAATTCAATTCA+AGG | + | chr3_4:79388118-79388137 | None:intergenic | 20.0% |
| !!! | TTTGATAATATACTCCTTTA+AGG | - | chr3_4:79388208-79388227 | Msa0525770:CDS | 20.0% |
| !! | TGACTATCATTTCAATTAAT+TGG | - | chr3_4:79388340-79388359 | Msa0525770:intron | 20.0% |
| !! | AACGTAGTAATATTCAAAAT+TGG | + | chr3_4:79388654-79388673 | None:intergenic | 20.0% |
| !! | AGGAAATAAGTAAAAATAAG+AGG | - | chr3_4:79388743-79388762 | Msa0525770:intron | 20.0% |
| !! | AAATAAGTAAAAATAAGAGG+TGG | - | chr3_4:79388746-79388765 | Msa0525770:intron | 20.0% |
| !! | AAATGAAGGTTATAAATCAA+TGG | + | chr3_4:79388792-79388811 | None:intergenic | 20.0% |
| !! | TAAAAGAAAACATTAATTGG+AGG | - | chr3_4:79389037-79389056 | Msa0525770:CDS | 20.0% |
| !! | AATTTACAAGTAATCAAGAT+AGG | + | chr3_4:79389949-79389968 | None:intergenic | 20.0% |
| !! | ATAATAATTAAAGAAAGGGA+AGG | - | chr3_4:79390148-79390167 | Msa0525770:five_prime_UTR | 20.0% |
| !! | AAGCAGATTTGGAAATTTTA+CGG | + | chr3_4:79384045-79384064 | None:intergenic | 25.0% |
| ! | AAGCAATTGAAATTGATTGA+AGG | + | chr3_4:79384217-79384236 | None:intergenic | 25.0% |
| ! | ATTGAATTGAGGAAATTAAG+AGG | + | chr3_4:79384245-79384264 | None:intergenic | 25.0% |
| ! | CATAATCATTAAGCGAATTA+AGG | + | chr3_4:79384285-79384304 | None:intergenic | 25.0% |
| !! | TTAAAATTAGTTTAGCACGA+AGG | + | chr3_4:79384384-79384403 | None:intergenic | 25.0% |
| !! | AAACTAATTTTAAGCGGTTT+AGG | - | chr3_4:79384391-79384410 | Msa0525770:CDS | 25.0% |
| ! | TGAAATTGATAGATATCAAG+TGG | - | chr3_4:79384589-79384608 | Msa0525770:CDS | 25.0% |
| ! | AAAGACTAAAAACAAACCAA+AGG | + | chr3_4:79384774-79384793 | None:intergenic | 25.0% |
| ! | GATTAATATTTACTACCATG+TGG | - | chr3_4:79385037-79385056 | Msa0525770:intron | 25.0% |
| ! | AGAAGGAAAAATTATGTCAA+TGG | + | chr3_4:79385063-79385082 | None:intergenic | 25.0% |
| ! | TATGAAAATATACCACAATC+TGG | - | chr3_4:79385256-79385275 | Msa0525770:intron | 25.0% |
| ! | ATGAAAATATACCACAATCT+GGG | - | chr3_4:79385257-79385276 | Msa0525770:intron | 25.0% |
| ! | AGACAATATAACATGGAATT+TGG | + | chr3_4:79385558-79385577 | None:intergenic | 25.0% |
| !!! | TGATAAGTTGTTTTGTTATG+TGG | - | chr3_4:79385652-79385671 | Msa0525770:intron | 25.0% |
| !!! | GATAAGTTGTTTTGTTATGT+GGG | - | chr3_4:79385653-79385672 | Msa0525770:intron | 25.0% |
| !!! | CTCATCAGTTTTTAAAACAT+TGG | + | chr3_4:79386184-79386203 | None:intergenic | 25.0% |
| ! | CATAAAAAGTTCATGTGATA+AGG | + | chr3_4:79386531-79386550 | None:intergenic | 25.0% |
| !! | CTTATCACATGAACTTTTTA+TGG | - | chr3_4:79386529-79386548 | Msa0525770:intron | 25.0% |
| !!! | TACCACTTTTCTTTTTGATA+TGG | - | chr3_4:79386771-79386790 | Msa0525770:intron | 25.0% |
| ! | AACCATATCAAAAAGAAAAG+TGG | + | chr3_4:79386776-79386795 | None:intergenic | 25.0% |
| ! | TTAAAAGTGACATTAATCTG+AGG | - | chr3_4:79387070-79387089 | Msa0525770:intron | 25.0% |
| !!! | ATTTTAGGGTCTTAAATTGT+TGG | - | chr3_4:79387268-79387287 | Msa0525770:intron | 25.0% |
| ! | ATTATTACTAGAAATGATCC+AGG | - | chr3_4:79387549-79387568 | Msa0525770:intron | 25.0% |
| !!! | CTTTAGGATTACAAATACAA+TGG | - | chr3_4:79387683-79387702 | Msa0525770:intron | 25.0% |
| !!! | AAATACAATGGATTGTGAAT+AGG | - | chr3_4:79387695-79387714 | Msa0525770:intron | 25.0% |
| !!! | AATACAATGGATTGTGAATA+GGG | - | chr3_4:79387696-79387715 | Msa0525770:intron | 25.0% |
| ! | GCAAGCAAAATTATCAATAT+TGG | + | chr3_4:79388070-79388089 | None:intergenic | 25.0% |
| ! | AAATTCAATTCAATTCAAGG+AGG | + | chr3_4:79388115-79388134 | None:intergenic | 25.0% |
| ! | TGAAAATAGAACACTAAACA+AGG | + | chr3_4:79388167-79388186 | None:intergenic | 25.0% |
| ! | TGAAATGATAGTCAACATTT+AGG | + | chr3_4:79388334-79388353 | None:intergenic | 25.0% |
| ! | ATCATTTCAATTAATTGGAG+AGG | - | chr3_4:79388345-79388364 | Msa0525770:intron | 25.0% |
| ! | GCTAAAAATAAATGGATCTA+AGG | + | chr3_4:79388515-79388534 | None:intergenic | 25.0% |
| ! | ATTTCGTCATGTAGAAATAA+GGG | + | chr3_4:79388557-79388576 | None:intergenic | 25.0% |
| ! | AATTTCGTCATGTAGAAATA+AGG | + | chr3_4:79388558-79388577 | None:intergenic | 25.0% |
| !! | GGGTATTTTCATAACAAAAA+AGG | + | chr3_4:79388613-79388632 | None:intergenic | 25.0% |
| ! | TGGAAATCAAGTAGAAATAA+GGG | + | chr3_4:79388634-79388653 | None:intergenic | 25.0% |
| ! | TTGGAAATCAAGTAGAAATA+AGG | + | chr3_4:79388635-79388654 | None:intergenic | 25.0% |
| !!! | TGGTATTTTTGTGACTAAAT+AGG | - | chr3_4:79388766-79388785 | Msa0525770:intron | 25.0% |
| !!! | TTTTTTTCAAATGCAAACAG+TGG | - | chr3_4:79388839-79388858 | Msa0525770:CDS | 25.0% |
| !! | ACAAATTTAGGAGTATGTTA+CGG | - | chr3_4:79389061-79389080 | Msa0525770:CDS | 25.0% |
| ! | AATAGTTATGAGATAGTTGT+AGG | + | chr3_4:79389129-79389148 | None:intergenic | 25.0% |
| ! | AATCAAGATAGGTATAGTTT+CGG | + | chr3_4:79389938-79389957 | None:intergenic | 25.0% |
| !! | AAATACTAGACAAAAGTACA+TGG | + | chr3_4:79389995-79390014 | None:intergenic | 25.0% |
| !! | TGTACTTTTGTCTAGTATTT+AGG | - | chr3_4:79389995-79390014 | Msa0525770:intron | 25.0% |
| ! | TGACAGTATTTATATTACCA+AGG | - | chr3_4:79390031-79390050 | Msa0525770:intron | 25.0% |
| ! | GACAGTATTTATATTACCAA+GGG | - | chr3_4:79390032-79390051 | Msa0525770:intron | 25.0% |
| ! | TCATCATATAGTGTAAAACA+TGG | - | chr3_4:79390087-79390106 | Msa0525770:intron | 25.0% |
| !! | ATCTTGCTTATACATGTTTT+TGG | - | chr3_4:79390185-79390204 | Msa0525770:five_prime_UTR | 25.0% |
| ! | AGATTGATGAGTTGAGAAAA+TGG | + | chr3_4:79384180-79384199 | None:intergenic | 30.0% |
| !!! | GATTTAGGTTTTTAGTTTCG+AGG | - | chr3_4:79384345-79384364 | Msa0525770:CDS | 30.0% |
| ! | CGTGCTAAACTAATTTTAAG+CGG | - | chr3_4:79384385-79384404 | Msa0525770:CDS | 30.0% |
| ! | TGTTCAAGATGATAATGAGA+TGG | - | chr3_4:79384662-79384681 | Msa0525770:CDS | 30.0% |
| ! | GATGATGATATGTATTTTCG+TGG | - | chr3_4:79384693-79384712 | Msa0525770:CDS | 30.0% |
| TCGAATTCAAACTGTAACAA+AGG | + | chr3_4:79384811-79384830 | None:intergenic | 30.0% | |
| ! | TCCGTTTGAAAAACTTTTGA+GGG | - | chr3_4:79384873-79384892 | Msa0525770:CDS | 30.0% |
| !! | ACCCTCAAAAGTTTTTCAAA+CGG | + | chr3_4:79384877-79384896 | None:intergenic | 30.0% |
| ! | TATTCGGTTTTCCTGTAATA+AGG | + | chr3_4:79385119-79385138 | None:intergenic | 30.0% |
| TGAAAATATACCACAATCTG+GGG | - | chr3_4:79385258-79385277 | Msa0525770:intron | 30.0% | |
| AGTGCAAAGTAACACAAAAA+GGG | - | chr3_4:79385402-79385421 | Msa0525770:intron | 30.0% | |
| !! | ATGAAGTATTGTTGACTTCA+CGG | + | chr3_4:79385462-79385481 | None:intergenic | 30.0% |
| CATCTTCAGACAATATAACA+TGG | + | chr3_4:79385565-79385584 | None:intergenic | 30.0% | |
| TATCACGAGACAATATAACA+TGG | + | chr3_4:79385613-79385632 | None:intergenic | 30.0% | |
| ! | TTGTTGTTAGAGTATCACTT+AGG | - | chr3_4:79385934-79385953 | Msa0525770:intron | 30.0% |
| ! | ATCTTGTTTGAAACTTAACC+TGG | + | chr3_4:79386211-79386230 | None:intergenic | 30.0% |
| !! | AAAGTATTAGGGTTTGTTAC+AGG | + | chr3_4:79386565-79386584 | None:intergenic | 30.0% |
| CAATTTGTGCAACAAAAGTA+GGG | + | chr3_4:79386833-79386852 | None:intergenic | 30.0% | |
| !!! | TTCACCTTTGTTTTTGAGAT+AGG | - | chr3_4:79386923-79386942 | Msa0525770:intron | 30.0% |
| !!! | TCACCTTTGTTTTTGAGATA+GGG | - | chr3_4:79386924-79386943 | Msa0525770:intron | 30.0% |
| AGGAAATAAAAGAAAGACCT+GGG | + | chr3_4:79387224-79387243 | None:intergenic | 30.0% | |
| AAGGAAATAAAAGAAAGACC+TGG | + | chr3_4:79387225-79387244 | None:intergenic | 30.0% | |
| GAAAAAAAGAAGGGGAAAAA+AGG | + | chr3_4:79387244-79387263 | None:intergenic | 30.0% | |
| ! | TAGAAATGATCCAGGATTTT+TGG | - | chr3_4:79387557-79387576 | Msa0525770:intron | 30.0% |
| TTTGAATTTGCCAAAAATCC+TGG | + | chr3_4:79387570-79387589 | None:intergenic | 30.0% | |
| !! | CTTTAGGATTACAGATACAA+TGG | - | chr3_4:79387617-79387636 | Msa0525770:intron | 30.0% |
| ATTGTGAATAGGGAAATGAA+AGG | - | chr3_4:79387706-79387725 | Msa0525770:intron | 30.0% | |
| TTGTGAATAGGGAAATGAAA+GGG | - | chr3_4:79387707-79387726 | Msa0525770:intron | 30.0% | |
| AGAAAAGAAACTGAAGAGAA+AGG | - | chr3_4:79387940-79387959 | Msa0525770:intron | 30.0% | |
| ! | TCTGATGAATTTTCAGATGT+TGG | - | chr3_4:79388139-79388158 | Msa0525770:intron | 30.0% |
| ATTTCAATTAATTGGAGAGG+AGG | - | chr3_4:79388348-79388367 | Msa0525770:intron | 30.0% | |
| TTTCAATTAATTGGAGAGGA+GGG | - | chr3_4:79388349-79388368 | Msa0525770:intron | 30.0% | |
| ! | AACTTAGAAGTACAGAGTTA+TGG | - | chr3_4:79388407-79388426 | Msa0525770:CDS | 30.0% |
| TTTCTACATGACGAAATTCT+TGG | - | chr3_4:79388560-79388579 | Msa0525770:intron | 30.0% | |
| TTCTACATGACGAAATTCTT+GGG | - | chr3_4:79388561-79388580 | Msa0525770:intron | 30.0% | |
| GGAAATCAAGTAGAAATAAG+GGG | + | chr3_4:79388633-79388652 | None:intergenic | 30.0% | |
| TAATGAGGAATAGACTGAAA+AGG | - | chr3_4:79388877-79388896 | Msa0525770:CDS | 30.0% | |
| TTCGAGTAATGTTATGAGTA+AGG | - | chr3_4:79388937-79388956 | Msa0525770:intron | 30.0% | |
| TATGAGTAAGGAAGAAATGA+TGG | - | chr3_4:79388949-79388968 | Msa0525770:intron | 30.0% | |
| ATGAGTAAGGAAGAAATGAT+GGG | - | chr3_4:79388950-79388969 | Msa0525770:intron | 30.0% | |
| ! | TTAATTGGAGGCACAAATTT+AGG | - | chr3_4:79389049-79389068 | Msa0525770:CDS | 30.0% |
| TAAGAAGCTCAACTATACAA+AGG | + | chr3_4:79389187-79389206 | None:intergenic | 30.0% | |
| ATACTTCATTAAGCCCTAAT+GGG | - | chr3_4:79389360-79389379 | Msa0525770:intron | 30.0% | |
| ! | TTACAAGTTGTTTCCCATTA+GGG | + | chr3_4:79389376-79389395 | None:intergenic | 30.0% |
| ! | ATTACAAGTTGTTTCCCATT+AGG | + | chr3_4:79389377-79389396 | None:intergenic | 30.0% |
| CTTGGATTATTCATTTGCAT+CGG | - | chr3_4:79389578-79389597 | Msa0525770:CDS | 30.0% | |
| ATAATTAAAGAAAGGGAAGG+AGG | - | chr3_4:79390151-79390170 | Msa0525770:five_prime_UTR | 30.0% | |
| TAATTAAAGAAAGGGAAGGA+GGG | - | chr3_4:79390152-79390171 | Msa0525770:five_prime_UTR | 30.0% | |
| !!! | TGCTTATACATGTTTTTGGT+TGG | - | chr3_4:79390189-79390208 | Msa0525770:five_prime_UTR | 30.0% |
| ! | CGCAAATTTTGTTCGGATTT+AGG | - | chr3_4:79384330-79384349 | Msa0525770:exon | 35.0% |
| !!! | TTAGGTTTTTAGTTTCGAGG+AGG | - | chr3_4:79384348-79384367 | Msa0525770:CDS | 35.0% |
| TGTTAGTATTATGCTGAGAG+TGG | - | chr3_4:79384502-79384521 | Msa0525770:CDS | 35.0% | |
| ! | GATGATATGTATTTTCGTGG+CGG | - | chr3_4:79384696-79384715 | Msa0525770:CDS | 35.0% |
| ! | ATGATATGTATTTTCGTGGC+GGG | - | chr3_4:79384697-79384716 | Msa0525770:CDS | 35.0% |
| ! | CTCCGTTTGAAAAACTTTTG+AGG | - | chr3_4:79384872-79384891 | Msa0525770:CDS | 35.0% |
| AAATTATGTCAATGGCCACA+TGG | + | chr3_4:79385055-79385074 | None:intergenic | 35.0% | |
| AGGATATTCAAGGTATACCT+TGG | - | chr3_4:79385173-79385192 | Msa0525770:intron | 35.0% | |
| GGATATTCAAGGTATACCTT+GGG | - | chr3_4:79385174-79385193 | Msa0525770:intron | 35.0% | |
| GAGTGCAAAGTAACACAAAA+AGG | - | chr3_4:79385401-79385420 | Msa0525770:intron | 35.0% | |
| GTGCAAAGTAACACAAAAAG+GGG | - | chr3_4:79385403-79385422 | Msa0525770:intron | 35.0% | |
| TGCAAAGTAACACAAAAAGG+GGG | - | chr3_4:79385404-79385423 | Msa0525770:intron | 35.0% | |
| CACATTACTCAATTGTTCAC+TGG | - | chr3_4:79385828-79385847 | Msa0525770:intron | 35.0% | |
| ! | TCTGAAGTTCTCAATGTATC+AGG | - | chr3_4:79385872-79385891 | Msa0525770:intron | 35.0% |
| CTGAAGTTCTCAATGTATCA+GGG | - | chr3_4:79385873-79385892 | Msa0525770:intron | 35.0% | |
| GCACAAATTATTACCTCACA+TGG | + | chr3_4:79385908-79385927 | None:intergenic | 35.0% | |
| TCAGACACAAATTAGTACAC+TGG | - | chr3_4:79386024-79386043 | Msa0525770:intron | 35.0% | |
| !! | GTGATAACTTGTTGATTGCT+GGG | - | chr3_4:79386053-79386072 | Msa0525770:intron | 35.0% |
| !! | TGATAACTTGTTGATTGCTG+GGG | - | chr3_4:79386054-79386073 | Msa0525770:intron | 35.0% |
| !!! | CTGAAAGTACTGTTACGTTT+TGG | - | chr3_4:79386132-79386151 | Msa0525770:intron | 35.0% |
| ! | TTGTTTGAAACTTAACCTGG+AGG | + | chr3_4:79386208-79386227 | None:intergenic | 35.0% |
| ! | CACATGAACTTTTTATGGAC+CGG | - | chr3_4:79386534-79386553 | Msa0525770:intron | 35.0% |
| ! | ACATGAACTTTTTATGGACC+GGG | - | chr3_4:79386535-79386554 | Msa0525770:intron | 35.0% |
| !! | TATTAGGGTTTGTTACAGGT+GGG | + | chr3_4:79386561-79386580 | None:intergenic | 35.0% |
| GCAAAAAGAAAGATGCAATG+AGG | + | chr3_4:79386645-79386664 | None:intergenic | 35.0% | |
| TTAGTCGTTTGTGATTGTGT+TGG | + | chr3_4:79386679-79386698 | None:intergenic | 35.0% | |
| CCAATTTGTGCAACAAAAGT+AGG | + | chr3_4:79386834-79386853 | None:intergenic | 35.0% | |
| !! | CCTACTTTTGTTGCACAAAT+TGG | - | chr3_4:79386831-79386850 | Msa0525770:intron | 35.0% |
| CAACCCTATCTCAAAAACAA+AGG | + | chr3_4:79386930-79386949 | None:intergenic | 35.0% | |
| ACAATCAATTCATCTGTCAG+TGG | - | chr3_4:79387341-79387360 | Msa0525770:intron | 35.0% | |
| TTCATGGCTTCAAACAATGA+TGG | - | chr3_4:79387374-79387393 | Msa0525770:intron | 35.0% | |
| !! | AAACAATGATGGTGGAATCA+GGG | - | chr3_4:79387385-79387404 | Msa0525770:intron | 35.0% |
| GTAGAATGGCTTACATTTAC+TGG | + | chr3_4:79387461-79387480 | None:intergenic | 35.0% | |
| GAAATGTAAGCCATTCTACT+TGG | - | chr3_4:79387497-79387516 | Msa0525770:intron | 35.0% | |
| !! | AGATACAATGGATTGAGAAG+AGG | - | chr3_4:79387629-79387648 | Msa0525770:intron | 35.0% |
| !! | GATACAATGGATTGAGAAGA+GGG | - | chr3_4:79387630-79387649 | Msa0525770:intron | 35.0% |
| TTGAGAAGAGGGAAAGTAAA+TGG | - | chr3_4:79387641-79387660 | Msa0525770:intron | 35.0% | |
| ! | AGAGGGAAAGTAAATGGATT+TGG | - | chr3_4:79387647-79387666 | Msa0525770:intron | 35.0% |
| ! | CAATATTCTGTCTAGCGTTT+TGG | - | chr3_4:79387840-79387859 | Msa0525770:intron | 35.0% |
| CATCATGGGTATGTTTAATG+AGG | - | chr3_4:79388862-79388881 | Msa0525770:CDS | 35.0% | |
| GTGGGATAAAAGATTTGAGA+TGG | - | chr3_4:79388994-79389013 | Msa0525770:intron | 35.0% | |
| CATACTTCATTAAGCCCTAA+TGG | - | chr3_4:79389359-79389378 | Msa0525770:intron | 35.0% | |
| GGGAAACAACTTGTAATTGT+TGG | - | chr3_4:79389380-79389399 | Msa0525770:intron | 35.0% | |
| ATTAGAATGAGTCAAGTGTG+TGG | - | chr3_4:79389483-79389502 | Msa0525770:intron | 35.0% | |
| TTAGAATGAGTCAAGTGTGT+GGG | - | chr3_4:79389484-79389503 | Msa0525770:intron | 35.0% | |
| ! | ATTATTCATTTGCATCGGCA+TGG | - | chr3_4:79389583-79389602 | Msa0525770:CDS | 35.0% |
| !! | ATGGTTTCATTTTTGCCACT+GGG | - | chr3_4:79389613-79389632 | Msa0525770:CDS | 35.0% |
| ! | AAATGCGGCATGTTTTATCT+TGG | + | chr3_4:79389641-79389660 | None:intergenic | 35.0% |
| AAGATAAAACATGCCGCATT+TGG | - | chr3_4:79389640-79389659 | Msa0525770:CDS | 35.0% | |
| AGATAAAACATGCCGCATTT+GGG | - | chr3_4:79389641-79389660 | Msa0525770:CDS | 35.0% | |
| ! | AAAGTCTGTTGCTGTTCTTA+AGG | - | chr3_4:79389680-79389699 | Msa0525770:five_prime_UTR | 35.0% |
| ! | AAGTCTGTTGCTGTTCTTAA+GGG | - | chr3_4:79389681-79389700 | Msa0525770:intron | 35.0% |
| TGCAAAGCAAGGATTTGAAA+AGG | - | chr3_4:79389794-79389813 | Msa0525770:intron | 35.0% | |
| !!! | GAGCAAGAGATCGATTTTTT+TGG | - | chr3_4:79389816-79389835 | Msa0525770:intron | 35.0% |
| !!! | AGAGATCGATTTTTTTGGAG+AGG | - | chr3_4:79389821-79389840 | Msa0525770:intron | 35.0% |
| !!! | AGTCGCTTTTTATTGGTGTA+TGG | - | chr3_4:79389874-79389893 | Msa0525770:intron | 35.0% |
| !!! | GTCGCTTTTTATTGGTGTAT+GGG | - | chr3_4:79389875-79389894 | Msa0525770:intron | 35.0% |
| TTTCTTCTTTCTACTTCCCT+TGG | + | chr3_4:79390051-79390070 | None:intergenic | 35.0% | |
| AAGGGAAGTAGAAAGAAGAA+AGG | - | chr3_4:79390050-79390069 | Msa0525770:intron | 35.0% | |
| ATAGTGTAAAACATGGCTTG+AGG | - | chr3_4:79390094-79390113 | Msa0525770:intron | 35.0% | |
| GAATTGCGATGAAGCAGATT+TGG | + | chr3_4:79384056-79384075 | None:intergenic | 40.0% | |
| TCAATACCATGGGGATGAAA+TGG | - | chr3_4:79384635-79384654 | Msa0525770:CDS | 40.0% | |
| ! | AGATGATAATGAGATGGCTG+AGG | - | chr3_4:79384668-79384687 | Msa0525770:CDS | 40.0% |
| TGGTGAATCTGATACTGATG+AGG | - | chr3_4:79384728-79384747 | Msa0525770:intron | 40.0% | |
| CGACGATGAATATGATCCTT+TGG | - | chr3_4:79384755-79384774 | Msa0525770:intron | 40.0% | |
| !! | TCACGGGTTGACATTTGTTT+TGG | - | chr3_4:79384962-79384981 | Msa0525770:intron | 40.0% |
| !!! | TCCTTCTGCTTGCACTTTTT+TGG | - | chr3_4:79385076-79385095 | Msa0525770:intron | 40.0% |
| !!! | CCTTCTGCTTGCACTTTTTT+GGG | - | chr3_4:79385077-79385096 | Msa0525770:intron | 40.0% |
| !!! | CTTCTGCTTGCACTTTTTTG+GGG | - | chr3_4:79385078-79385097 | Msa0525770:intron | 40.0% |
| GGCTATGGATTCCTTATTAC+AGG | - | chr3_4:79385105-79385124 | Msa0525770:intron | 40.0% | |
| CTGCAGTGGTATCTGTTATT+CGG | + | chr3_4:79385135-79385154 | None:intergenic | 40.0% | |
| TTCAAGGTATACCTTGGGAT+AGG | - | chr3_4:79385179-79385198 | Msa0525770:intron | 40.0% | |
| ! | TTCTTTTCTCTCTGATCCAC+AGG | - | chr3_4:79385379-79385398 | Msa0525770:intron | 40.0% |
| GGGGATTGTATTACGATTTC+TGG | - | chr3_4:79385423-79385442 | Msa0525770:intron | 40.0% | |
| AAGATGCGACAAGAGTTGTT+TGG | - | chr3_4:79385531-79385550 | Msa0525770:intron | 40.0% | |
| AAGATGCGACAAGAGTTGTT+TGG | - | chr3_4:79385531-79385550 | Msa0525770:intron | 40.0% | |
| AACAACTTATCAGTCATCGC+AGG | + | chr3_4:79385644-79385663 | None:intergenic | 40.0% | |
| AAACTAAGTTTCTCAGCTGC+AGG | + | chr3_4:79385775-79385794 | None:intergenic | 40.0% | |
| TGCAGCTGAGAAACTTAGTT+TGG | - | chr3_4:79385774-79385793 | Msa0525770:intron | 40.0% | |
| ! | GTGTTGCTAACAGAAACATC+CGG | - | chr3_4:79385979-79385998 | Msa0525770:intron | 40.0% |
| TGTTGCTAACAGAAACATCC+GGG | - | chr3_4:79385980-79385999 | Msa0525770:intron | 40.0% | |
| !! | CGTGATAACTTGTTGATTGC+TGG | - | chr3_4:79386052-79386071 | Msa0525770:intron | 40.0% |
| !! | GATAACTTGTTGATTGCTGG+GGG | - | chr3_4:79386055-79386074 | Msa0525770:intron | 40.0% |
| TCAAGGAGAGCTTATTTGCA+AGG | - | chr3_4:79386081-79386100 | Msa0525770:intron | 40.0% | |
| TAAAAACTGATGAGACCTCC+AGG | - | chr3_4:79386190-79386209 | Msa0525770:intron | 40.0% | |
| GCGATTGAAGACTTACGAAT+TGG | + | chr3_4:79386376-79386395 | None:intergenic | 40.0% | |
| !! | GTATTAGGGTTTGTTACAGG+TGG | + | chr3_4:79386562-79386581 | None:intergenic | 40.0% |
| AATGAGGAACATTTGCTCAC+TGG | + | chr3_4:79386629-79386648 | None:intergenic | 40.0% | |
| GATTGTGTTGGATGAAGAAG+CGG | + | chr3_4:79386667-79386686 | None:intergenic | 40.0% | |
| TTGTTCTCGAACTACGTATG+AGG | - | chr3_4:79387160-79387179 | Msa0525770:intron | 40.0% | |
| TTGAGATTTATGAGCATCCC+AGG | - | chr3_4:79387204-79387223 | Msa0525770:intron | 40.0% | |
| AGGGTCTTAAATTGTTGGCA+TGG | - | chr3_4:79387273-79387292 | Msa0525770:intron | 40.0% | |
| TAGTATGCAGTCATCCTTGA+GGG | + | chr3_4:79387321-79387340 | None:intergenic | 40.0% | |
| TTAGTATGCAGTCATCCTTG+AGG | + | chr3_4:79387322-79387341 | None:intergenic | 40.0% | |
| ATGGCTTCAAACAATGATGG+TGG | - | chr3_4:79387377-79387396 | Msa0525770:intron | 40.0% | |
| !! | CAAACAATGATGGTGGAATC+AGG | - | chr3_4:79387384-79387403 | Msa0525770:intron | 40.0% |
| TGGAATCAGGGACTTTGATA+TGG | - | chr3_4:79387397-79387416 | Msa0525770:intron | 40.0% | |
| CCACAGAAAGTCAAGTAGAA+TGG | + | chr3_4:79387475-79387494 | None:intergenic | 40.0% | |
| CCATTCTACTTGACTTTCTG+TGG | - | chr3_4:79387472-79387491 | Msa0525770:intron | 40.0% | |
| TAGCTAGTTCACAGTGCTTT+AGG | - | chr3_4:79387601-79387620 | Msa0525770:intron | 40.0% | |
| ! | TGGCTAGTTCACAATGCTTT+AGG | - | chr3_4:79387667-79387686 | Msa0525770:intron | 40.0% |
| !! | TACTCCTTTAAGGCACTAAC+TGG | - | chr3_4:79388218-79388237 | Msa0525770:CDS | 40.0% |
| AACAGATTCCAGCTACAAAC+TGG | + | chr3_4:79388283-79388302 | None:intergenic | 40.0% | |
| ! | GTCAGTACGTGATTTTTACG+TGG | + | chr3_4:79388442-79388461 | None:intergenic | 40.0% |
| ACGAAATTCTTGGGCAAGTT+TGG | - | chr3_4:79388570-79388589 | Msa0525770:intron | 40.0% | |
| GACGCAAACGTGAAAAATGA+AGG | + | chr3_4:79388806-79388825 | None:intergenic | 40.0% | |
| AAATGCAAACAGTGGCATCA+TGG | - | chr3_4:79388847-79388866 | Msa0525770:CDS | 40.0% | |
| AATGCAAACAGTGGCATCAT+GGG | - | chr3_4:79388848-79388867 | Msa0525770:CDS | 40.0% | |
| GGTCATACACATGAATGGTT+TGG | + | chr3_4:79388909-79388928 | None:intergenic | 40.0% | |
| TCTCTGGTCATACACATGAA+TGG | + | chr3_4:79388914-79388933 | None:intergenic | 40.0% | |
| AACATTACTCGAAAGCTCTC+TGG | + | chr3_4:79388930-79388949 | None:intergenic | 40.0% | |
| ! | AGTAAGGAAGAAATGATGGG+AGG | - | chr3_4:79388953-79388972 | Msa0525770:intron | 40.0% |
| ! | GTAAGGAAGAAATGATGGGA+GGG | - | chr3_4:79388954-79388973 | Msa0525770:intron | 40.0% |
| AATTTGCATACACAAGCCTC+TGG | + | chr3_4:79389096-79389115 | None:intergenic | 40.0% | |
| TAGACTATTGCACCTCTATG+CGG | - | chr3_4:79389552-79389571 | Msa0525770:CDS | 40.0% | |
| GTGGCAAAAATGAAACCATC+AGG | + | chr3_4:79389612-79389631 | None:intergenic | 40.0% | |
| !! | GATGGTTTCATTTTTGCCAC+TGG | - | chr3_4:79389612-79389631 | Msa0525770:CDS | 40.0% |
| ! | TGTTTTATCTTGGTTCCCAG+TGG | + | chr3_4:79389631-79389650 | None:intergenic | 40.0% |
| ! | AGTCTGTTGCTGTTCTTAAG+GGG | - | chr3_4:79389682-79389701 | Msa0525770:intron | 40.0% |
| TCAATACGCTTCACATCTGA+TGG | - | chr3_4:79389723-79389742 | Msa0525770:intron | 40.0% | |
| CAATACGCTTCACATCTGAT+GGG | - | chr3_4:79389724-79389743 | Msa0525770:intron | 40.0% | |
| CATGTCTATGATGCAAAGCA+AGG | - | chr3_4:79389783-79389802 | Msa0525770:intron | 40.0% | |
| !!! | GATTTTTTTGGAGAGGTCTC+AGG | - | chr3_4:79389828-79389847 | Msa0525770:intron | 40.0% |
| TAAAAAGCGACTCTGTGTCA+GGG | + | chr3_4:79389866-79389885 | None:intergenic | 40.0% | |
| ATAAAAAGCGACTCTGTGTC+AGG | + | chr3_4:79389867-79389886 | None:intergenic | 40.0% | |
| !!! | GACACAGAGTCGCTTTTTAT+TGG | - | chr3_4:79389867-79389886 | Msa0525770:intron | 40.0% |
| GAACTGAAGAAGACTTCCAT+AGG | + | chr3_4:79389907-79389926 | None:intergenic | 40.0% | |
| AGAAGAAAGGTGAACTGACA+TGG | - | chr3_4:79390063-79390082 | Msa0525770:intron | 40.0% | |
| AAAACATGGCTTGAGGATGT+TGG | - | chr3_4:79390101-79390120 | Msa0525770:intron | 40.0% | |
| AAACATGGCTTGAGGATGTT+GGG | - | chr3_4:79390102-79390121 | Msa0525770:intron | 40.0% | |
| ! | TGTTCTGGATCTCAGGGATA+AGG | + | chr3_4:79384102-79384121 | None:intergenic | 45.0% |
| ! | AGGGTTTGTTCTGGATCTCA+GGG | + | chr3_4:79384108-79384127 | None:intergenic | 45.0% |
| ! | TAGGGTTTGTTCTGGATCTC+AGG | + | chr3_4:79384109-79384128 | None:intergenic | 45.0% |
| ! | CTTGAGGTTAGGGTTTGTTC+TGG | + | chr3_4:79384117-79384136 | None:intergenic | 45.0% |
| CAGAACAAACCCTAACCTCA+AGG | - | chr3_4:79384115-79384134 | Msa0525770:three_prime_UTR | 45.0% | |
| TGGTGACCTGATTCTGTGTT+GGG | + | chr3_4:79384160-79384179 | None:intergenic | 45.0% | |
| ATGGTGACCTGATTCTGTGT+TGG | + | chr3_4:79384161-79384180 | None:intergenic | 45.0% | |
| !!! | GGTTTTTAGTTTCGAGGAGG+TGG | - | chr3_4:79384351-79384370 | Msa0525770:CDS | 45.0% |
| GGAACATGGCTCAATACCAT+GGG | - | chr3_4:79384625-79384644 | Msa0525770:CDS | 45.0% | |
| GAACATGGCTCAATACCATG+GGG | - | chr3_4:79384626-79384645 | Msa0525770:CDS | 45.0% | |
| CATACTCCATTTCATCCCCA+TGG | + | chr3_4:79384644-79384663 | None:intergenic | 45.0% | |
| AGTGTTAAACGCGTGCATCA+CGG | - | chr3_4:79384945-79384964 | Msa0525770:intron | 45.0% | |
| ! | CCCAAAAAAGTGCAAGCAGA+AGG | + | chr3_4:79385080-79385099 | None:intergenic | 45.0% |
| !!! | TGCTTGCACTTTTTTGGGGT+GGG | - | chr3_4:79385082-79385101 | Msa0525770:intron | 45.0% |
| AGGAGGGGAAAGGATATTCA+AGG | - | chr3_4:79385163-79385182 | Msa0525770:intron | 45.0% | |
| ATCTCGTCTTGCTTAGTGCT+TGG | - | chr3_4:79385303-79385322 | Msa0525770:intron | 45.0% | |
| ! | GCTTGGAGGCATATGAGTAA+TGG | - | chr3_4:79385320-79385339 | Msa0525770:intron | 45.0% |
| !! | TGTGTTACTTTGCACTCCTG+TGG | + | chr3_4:79385398-79385417 | None:intergenic | 45.0% |
| TCTGAGTAAAACCCTCCAAG+AGG | + | chr3_4:79386009-79386028 | None:intergenic | 45.0% | |
| ! | TTGATTGCTGGGGGTTTTCA+AGG | - | chr3_4:79386064-79386083 | Msa0525770:intron | 45.0% |
| AACGACTAAGTGAAGATCCG+CGG | - | chr3_4:79386690-79386709 | Msa0525770:intron | 45.0% | |
| AGTCAATCTTCGCTACACCA+TGG | + | chr3_4:79386725-79386744 | None:intergenic | 45.0% | |
| TCGAGAACAAAAGCTAACCC+CGG | + | chr3_4:79387150-79387169 | None:intergenic | 45.0% | |
| ATCACTAGTCACAACCCTCA+AGG | - | chr3_4:79387304-79387323 | Msa0525770:intron | 45.0% | |
| CAGTGGAGCTGTACATTTCA+TGG | - | chr3_4:79387358-79387377 | Msa0525770:intron | 45.0% | |
| ! | CGAAGCATTCATGCTTTCCT+TGG | - | chr3_4:79387435-79387454 | Msa0525770:intron | 45.0% |
| TGGCTTACATTTACTGGCCA+AGG | + | chr3_4:79387455-79387474 | None:intergenic | 45.0% | |
| CCACAGAAAGCCAAGTAGAA+TGG | + | chr3_4:79387510-79387529 | None:intergenic | 45.0% | |
| ! | CCATTCTACTTGGCTTTCTG+TGG | - | chr3_4:79387507-79387526 | Msa0525770:intron | 45.0% |
| !!! | GCGTTTTGGCTGTTGCATTA+TGG | - | chr3_4:79387854-79387873 | Msa0525770:intron | 45.0% |
| GTAGCCAGTTAGTGCCTTAA+AGG | + | chr3_4:79388225-79388244 | None:intergenic | 45.0% | |
| ACGAAAAGTTATCCCCTGAC+AGG | + | chr3_4:79388247-79388266 | None:intergenic | 45.0% | |
| ! | TGTCAGGGGATAACTTTTCG+TGG | - | chr3_4:79388246-79388265 | Msa0525770:CDS | 45.0% |
| ! | GTCAGGGGATAACTTTTCGT+GGG | - | chr3_4:79388247-79388266 | Msa0525770:CDS | 45.0% |
| CCAGCTACAAACTGGTGAAA+AGG | + | chr3_4:79388275-79388294 | None:intergenic | 45.0% | |
| ! | CCTTTTCACCAGTTTGTAGC+TGG | - | chr3_4:79388272-79388291 | Msa0525770:CDS | 45.0% |
| AATTGGAGAGGAGGGAAAAG+TGG | - | chr3_4:79388357-79388376 | Msa0525770:intron | 45.0% | |
| ATTGGAGAGGAGGGAAAAGT+GGG | - | chr3_4:79388358-79388377 | Msa0525770:intron | 45.0% | |
| GAAATTGAGAATCCCTCAGC+TGG | - | chr3_4:79388465-79388484 | Msa0525770:CDS | 45.0% | |
| TGAAAAACGACACCAGCTGA+GGG | + | chr3_4:79388480-79388499 | None:intergenic | 45.0% | |
| ATGAAAAACGACACCAGCTG+AGG | + | chr3_4:79388481-79388500 | None:intergenic | 45.0% | |
| GTGCAGTAGAATGTACAGGT+GGG | - | chr3_4:79388976-79388995 | Msa0525770:intron | 45.0% | |
| ATTGTTGGAGACAACCCAGA+TGG | - | chr3_4:79389395-79389414 | Msa0525770:intron | 45.0% | |
| AGACAACCCAGATGGTTTAC+TGG | - | chr3_4:79389403-79389422 | Msa0525770:intron | 45.0% | |
| CATCCACCAGTAAACCATCT+GGG | + | chr3_4:79389412-79389431 | None:intergenic | 45.0% | |
| ! | TTACTGGTGGATGCTCAAAC+TGG | - | chr3_4:79389419-79389438 | Msa0525770:intron | 45.0% |
| TAATCCAAGTGTCCGCATAG+AGG | + | chr3_4:79389567-79389586 | None:intergenic | 45.0% | |
| GATTCCGAACATCCCAAATG+CGG | + | chr3_4:79389656-79389675 | None:intergenic | 45.0% | |
| GTATTGAGCGTATAGCTCCA+AGG | + | chr3_4:79389710-79389729 | None:intergenic | 45.0% | |
| TAGACATGCACAAAGTCAGC+TGG | + | chr3_4:79389771-79389790 | None:intergenic | 45.0% | |
| AACATGGCTTGAGGATGTTG+GGG | - | chr3_4:79390103-79390122 | Msa0525770:intron | 45.0% | |
| !!! | TCTTTTTTTTTTTTTTTTTT+TGG | - | chr3_4:79384836-79384855 | Msa0525770:intron | 5.0% |
| !!! | CTTTTTTTTTTTTTTTTTTT+GGG | - | chr3_4:79384837-79384856 | Msa0525770:intron | 5.0% |
| !! | ATAAAAAATAAAATAAAAGA+GGG | + | chr3_4:79387813-79387832 | None:intergenic | 5.0% |
| !! | AATAAAAAATAAAATAAAAG+AGG | + | chr3_4:79387814-79387833 | None:intergenic | 5.0% |
| !! | TTAAATAATAATTAAAGAAA+GGG | - | chr3_4:79390144-79390163 | Msa0525770:five_prime_UTR | 5.0% |
| ! | TCTGTGTTGGGGATTGGTGA+AGG | + | chr3_4:79384148-79384167 | None:intergenic | 50.0% |
| CCTGATTCTGTGTTGGGGAT+TGG | + | chr3_4:79384154-79384173 | None:intergenic | 50.0% | |
| CCAATCCCCAACACAGAATC+AGG | - | chr3_4:79384151-79384170 | Msa0525770:three_prime_UTR | 50.0% | |
| GGTGACCTGATTCTGTGTTG+GGG | + | chr3_4:79384159-79384178 | None:intergenic | 50.0% | |
| TCAAGTGGTGAACTGTACCG+CGG | - | chr3_4:79384604-79384623 | Msa0525770:CDS | 50.0% | |
| ! | TGGTATTGAGCCATGTTCCG+CGG | + | chr3_4:79384624-79384643 | None:intergenic | 50.0% |
| CGGAACATGGCTCAATACCA+TGG | - | chr3_4:79384624-79384643 | Msa0525770:CDS | 50.0% | |
| GTGTTAAACGCGTGCATCAC+GGG | - | chr3_4:79384946-79384965 | Msa0525770:intron | 50.0% | |
| !!! | CTGCTTGCACTTTTTTGGGG+TGG | - | chr3_4:79385081-79385100 | Msa0525770:intron | 50.0% |
| !!! | GCTTGCACTTTTTTGGGGTG+GGG | - | chr3_4:79385083-79385102 | Msa0525770:intron | 50.0% |
| !!! | CTTGCACTTTTTTGGGGTGG+GGG | - | chr3_4:79385084-79385103 | Msa0525770:intron | 50.0% |
| ATACCACTGCAGCTGAAGCT+AGG | - | chr3_4:79385143-79385162 | Msa0525770:intron | 50.0% | |
| GTAATGCTCAGCCTATCCCA+AGG | + | chr3_4:79385193-79385212 | None:intergenic | 50.0% | |
| TCTGACAGTTCCCCAGATTG+TGG | + | chr3_4:79385271-79385290 | None:intergenic | 50.0% | |
| ATCTGGGGAACTGTCAGAGA+AGG | - | chr3_4:79385273-79385292 | Msa0525770:intron | 50.0% | |
| TCGTCTTGCTTAGTGCTTGG+AGG | - | chr3_4:79385306-79385325 | Msa0525770:intron | 50.0% | |
| GAGGAACATTTGCTCACTGG+CGG | + | chr3_4:79386626-79386645 | None:intergenic | 50.0% | |
| TTGCAGTACTTAGACCGACC+CGG | - | chr3_4:79387128-79387147 | Msa0525770:CDS | 50.0% | |
| AACAAAAGCTAACCCCGGGT+CGG | + | chr3_4:79387145-79387164 | None:intergenic | 50.0% | |
| CGAGAACAAAAGCTAACCCC+GGG | + | chr3_4:79387149-79387168 | None:intergenic | 50.0% | |
| CACTAACTGGCTACCTGTCA+GGG | - | chr3_4:79388231-79388250 | Msa0525770:CDS | 50.0% | |
| ACTAACTGGCTACCTGTCAG+GGG | - | chr3_4:79388232-79388251 | Msa0525770:CDS | 50.0% | |
| ! | GAGGGTGCAGTAGAATGTAC+AGG | - | chr3_4:79388972-79388991 | Msa0525770:intron | 50.0% |
| GGTGCAGTAGAATGTACAGG+TGG | - | chr3_4:79388975-79388994 | Msa0525770:intron | 50.0% | |
| GTTACGGTAGCATAGACCAG+AGG | - | chr3_4:79389077-79389096 | Msa0525770:CDS | 50.0% | |
| CAACCCAGATGGTTTACTGG+TGG | - | chr3_4:79389406-79389425 | Msa0525770:intron | 50.0% | |
| GCATCCACCAGTAAACCATC+TGG | + | chr3_4:79389413-79389432 | None:intergenic | 50.0% | |
| GGTGGATGCTCAAACTGGAA+AGG | - | chr3_4:79389424-79389443 | Msa0525770:intron | 50.0% | |
| ! | CATGCCGCATTTGGGATGTT+CGG | - | chr3_4:79389649-79389668 | Msa0525770:CDS | 50.0% |
| GCTGTTCTTAAGGGGAACCT+TGG | - | chr3_4:79389690-79389709 | Msa0525770:intron | 50.0% | |
| TACGCTTCACATCTGATGGG+CGG | - | chr3_4:79389727-79389746 | Msa0525770:intron | 50.0% | |
| ! | CACATCTGATGGGCGGTATA+TGG | - | chr3_4:79389734-79389753 | Msa0525770:intron | 50.0% |
| ! | TGATGGGCGGTATATGGCAA+TGG | - | chr3_4:79389740-79389759 | Msa0525770:intron | 50.0% |
| GGTGTATGGGATCGTACCTA+TGG | - | chr3_4:79389888-79389907 | Msa0525770:intron | 50.0% | |
| GTGAACTGTACCGCGGAACA+TGG | - | chr3_4:79384611-79384630 | Msa0525770:CDS | 55.0% | |
| TGTTGAACGCGCGTGATGCA+CGG | - | chr3_4:79384991-79385010 | Msa0525770:intron | 55.0% | |
| !!! | CTTTTTTGGGGTGGGGGCTA+TGG | - | chr3_4:79385090-79385109 | Msa0525770:intron | 55.0% |
| CACTGCAGCTGAAGCTAGGA+GGG | - | chr3_4:79385147-79385166 | Msa0525770:intron | 55.0% | |
| ACTGCAGCTGAAGCTAGGAG+GGG | - | chr3_4:79385148-79385167 | Msa0525770:intron | 55.0% | |
| AGCTGAAGCTAGGAGGGGAA+AGG | - | chr3_4:79385153-79385172 | Msa0525770:intron | 55.0% | |
| AGGGCATGTTGCTCCATGTG+AGG | - | chr3_4:79385892-79385911 | Msa0525770:intron | 55.0% | |
| GAAACATCCGGGAAGCCTCT+TGG | - | chr3_4:79385991-79386010 | Msa0525770:intron | 55.0% | |
| AAACCCTCCAAGAGGCTTCC+CGG | + | chr3_4:79386001-79386020 | None:intergenic | 55.0% | |
| GAACATTTGCTCACTGGCGG+TGG | + | chr3_4:79386623-79386642 | None:intergenic | 55.0% | |
| TGCAGTACTTAGACCGACCC+GGG | - | chr3_4:79387129-79387148 | Msa0525770:CDS | 55.0% | |
| GCACTAACTGGCTACCTGTC+AGG | - | chr3_4:79388230-79388249 | Msa0525770:CDS | 55.0% | |
| TGCACCTCTATGCGGACACT+TGG | - | chr3_4:79389560-79389579 | Msa0525770:CDS | 55.0% | |
| GGTGCAGCGCCTTGAGGTTA+GGG | + | chr3_4:79384127-79384146 | None:intergenic | 60.0% | |
| AGGTGCAGCGCCTTGAGGTT+AGG | + | chr3_4:79384128-79384147 | None:intergenic | 60.0% | |
| GTTGAACGCGCGTGATGCAC+GGG | - | chr3_4:79384992-79385011 | Msa0525770:intron | 60.0% | |
| CCTCCTAGCTTCAGCTGCAG+TGG | + | chr3_4:79385149-79385168 | None:intergenic | 60.0% | |
| CCACTGCAGCTGAAGCTAGG+AGG | - | chr3_4:79385146-79385165 | Msa0525770:intron | 60.0% | |
| ACATCCGGGAAGCCTCTTGG+AGG | - | chr3_4:79385994-79386013 | Msa0525770:intron | 60.0% | |
| CATCCGGGAAGCCTCTTGGA+GGG | - | chr3_4:79385995-79386014 | Msa0525770:intron | 60.0% | |
| !! | GGGTTTGTTACAGGTGGGCC+CGG | + | chr3_4:79386556-79386575 | None:intergenic | 60.0% |
| TCACTGGCGGTGGCATGACT+TGG | + | chr3_4:79386613-79386632 | None:intergenic | 60.0% | |
| CTAAGTGAAGATCCGCGGCG+TGG | - | chr3_4:79386695-79386714 | Msa0525770:intron | 60.0% | |
| GCAGTACTTAGACCGACCCG+GGG | - | chr3_4:79387130-79387149 | Msa0525770:CDS | 60.0% | |
| ! | GCATCGGCATGGCATCCTGA+TGG | - | chr3_4:79389594-79389613 | Msa0525770:CDS | 60.0% |
| ! | GGTGAAGGTGCAGCGCCTTG+AGG | + | chr3_4:79384133-79384152 | None:intergenic | 65.0% |
| !! | TTTCGTGGCGGGAGAGCGCT+TGG | - | chr3_4:79384708-79384727 | Msa0525770:CDS | 65.0% |
| ATCCGCGGCGTGGCTATCCA+TGG | - | chr3_4:79386705-79386724 | Msa0525770:intron | 65.0% | |
| CACCATGGATAGCCACGCCG+CGG | + | chr3_4:79386710-79386729 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 79384039 | 79390261 | 79384039 | ID=Msa0525770;Name=Msa0525770 |
| chr3_4 | mRNA | 79384039 | 79390261 | 79384039 | ID=Msa0525770-mRNA-1;Parent=Msa0525770;Name=Msa0525770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=163|1|1|1|0.88|0.8|10|296|447 |
| chr3_4 | exon | 79384039 | 79384745 | 79384039 | ID=Msa0525770-mRNA-1:exon:23797;Parent=Msa0525770-mRNA-1 |
| chr3_4 | exon | 79384855 | 79384941 | 79384855 | ID=Msa0525770-mRNA-1:exon:23796;Parent=Msa0525770-mRNA-1 |
| chr3_4 | exon | 79386834 | 79386939 | 79386834 | ID=Msa0525770-mRNA-1:exon:23795;Parent=Msa0525770-mRNA-1 |
| chr3_4 | exon | 79387075 | 79387166 | 79387075 | ID=Msa0525770-mRNA-1:exon:23794;Parent=Msa0525770-mRNA-1 |
| chr3_4 | exon | 79388198 | 79388308 | 79388198 | ID=Msa0525770-mRNA-1:exon:23793;Parent=Msa0525770-mRNA-1 |
| chr3_4 | exon | 79388387 | 79388521 | 79388387 | ID=Msa0525770-mRNA-1:exon:23792;Parent=Msa0525770-mRNA-1 |
| chr3_4 | exon | 79388813 | 79388899 | 79388813 | ID=Msa0525770-mRNA-1:exon:23791;Parent=Msa0525770-mRNA-1 |
| chr3_4 | exon | 79389006 | 79389173 | 79389006 | ID=Msa0525770-mRNA-1:exon:23790;Parent=Msa0525770-mRNA-1 |
| chr3_4 | exon | 79389524 | 79389699 | 79389524 | ID=Msa0525770-mRNA-1:exon:23789;Parent=Msa0525770-mRNA-1 |
| chr3_4 | exon | 79390128 | 79390261 | 79390128 | ID=Msa0525770-mRNA-1:exon:23788;Parent=Msa0525770-mRNA-1 |
| chr3_4 | five_prime_UTR | 79390128 | 79390261 | 79390128 | ID=Msa0525770-mRNA-1:five_prime_utr;Parent=Msa0525770-mRNA-1 |
| chr3_4 | five_prime_UTR | 79389671 | 79389699 | 79389671 | ID=Msa0525770-mRNA-1:five_prime_utr;Parent=Msa0525770-mRNA-1 |
| chr3_4 | CDS | 79389524 | 79389670 | 79389524 | ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1 |
| chr3_4 | CDS | 79389006 | 79389173 | 79389006 | ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1 |
| chr3_4 | CDS | 79388813 | 79388899 | 79388813 | ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1 |
| chr3_4 | CDS | 79388387 | 79388521 | 79388387 | ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1 |
| chr3_4 | CDS | 79388198 | 79388308 | 79388198 | ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1 |
| chr3_4 | CDS | 79387075 | 79387166 | 79387075 | ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1 |
| chr3_4 | CDS | 79386834 | 79386939 | 79386834 | ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1 |
| chr3_4 | CDS | 79384855 | 79384941 | 79384855 | ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1 |
| chr3_4 | CDS | 79384335 | 79384745 | 79384335 | ID=Msa0525770-mRNA-1:cds;Parent=Msa0525770-mRNA-1 |
| chr3_4 | three_prime_UTR | 79384039 | 79384334 | 79384039 | ID=Msa0525770-mRNA-1:three_prime_utr;Parent=Msa0525770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
