Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181140 | XP_013444158.1 | 96.538 | 260 | 5 | 1 | 1 | 256 | 1 | 260 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181140 | sp|Q8GYN5|RIN4_ARATH | 40.467 | 257 | 101 | 10 | 4 | 256 | 3 | 211 | 6.02e-46 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181140 | A0A072TXB9 | 96.538 | 260 | 5 | 1 | 1 | 256 | 1 | 260 | 0.0 | 509 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021610 | Msa1181140 | 0.818722 | 1.689638e-52 | -8.615850e-47 |
| Msa0022470 | Msa1181140 | 0.836064 | 1.164659e-56 | -8.615850e-47 |
| Msa0041840 | Msa1181140 | 0.808269 | 3.364899e-50 | -8.615850e-47 |
| Msa0051960 | Msa1181140 | 0.842360 | 2.711118e-58 | -8.615850e-47 |
| Msa0084710 | Msa1181140 | 0.814582 | 1.431448e-51 | -8.615850e-47 |
| Msa0095940 | Msa1181140 | 0.834615 | 2.705731e-56 | -8.615850e-47 |
| Msa0101960 | Msa1181140 | 0.842998 | 1.835947e-58 | -8.615850e-47 |
| Msa0613300 | Msa1181140 | 0.817700 | 2.878482e-52 | -8.615850e-47 |
| Msa0613420 | Msa1181140 | 0.835332 | 1.784825e-56 | -8.615850e-47 |
| Msa0650560 | Msa1181140 | 0.809220 | 2.106990e-50 | -8.615850e-47 |
| Msa0723580 | Msa1181140 | 0.829974 | 3.812182e-55 | -8.615850e-47 |
| Msa0745730 | Msa1181140 | 0.809357 | 1.969128e-50 | -8.615850e-47 |
| Msa0764070 | Msa1181140 | 0.844793 | 6.066578e-59 | -8.615850e-47 |
| Msa0804870 | Msa1181140 | 0.807907 | 4.019094e-50 | -8.615850e-47 |
| Msa0805890 | Msa1181140 | 0.827446 | 1.557127e-54 | -8.615850e-47 |
| Msa0807020 | Msa1181140 | 0.803840 | 2.876929e-49 | -8.615850e-47 |
| Msa0823370 | Msa1181140 | 0.805550 | 1.264648e-49 | -8.615850e-47 |
| Msa0826980 | Msa1181140 | 0.814011 | 1.914510e-51 | -8.615850e-47 |
| Msa0832950 | Msa1181140 | 0.860758 | 1.651931e-63 | -8.615850e-47 |
| Msa0833270 | Msa1181140 | 0.836460 | 9.237373e-57 | -8.615850e-47 |
| Msa0442860 | Msa1181140 | 0.834525 | 2.850945e-56 | -8.615850e-47 |
| Msa0459860 | Msa1181140 | 0.803002 | 4.291011e-49 | -8.615850e-47 |
| Msa1000800 | Msa1181140 | 0.814198 | 1.740717e-51 | -8.615850e-47 |
| Msa1038880 | Msa1181140 | 0.812991 | 3.208739e-51 | -8.615850e-47 |
| Msa0335080 | Msa1181140 | 0.810861 | 9.338481e-51 | -8.615850e-47 |
| Msa1132980 | Msa1181140 | 0.816692 | 4.851361e-52 | -8.615850e-47 |
| Msa1157110 | Msa1181140 | 0.802011 | 6.868966e-49 | -8.615850e-47 |
| Msa1180720 | Msa1181140 | 0.829855 | 4.075442e-55 | -8.615850e-47 |
| Msa1181140 | Msa1203600 | 0.801678 | 8.040251e-49 | -8.615850e-47 |
| Msa1181140 | Msa1224170 | 0.810731 | 9.961238e-51 | -8.615850e-47 |
| Msa1181140 | Msa1231710 | 0.850715 | 1.419104e-60 | -8.615850e-47 |
| Msa1181140 | Msa1256060 | 0.806565 | 7.732078e-50 | -8.615850e-47 |
| Msa1181140 | Msa1263430 | 0.800492 | 1.405192e-48 | -8.615850e-47 |
| Msa1181140 | Msa1281660 | 0.807970 | 3.896419e-50 | -8.615850e-47 |
| Msa1181140 | Msa1312440 | 0.839444 | 1.578456e-57 | -8.615850e-47 |
| Msa1181140 | Msa1387680 | 0.804880 | 1.746871e-49 | -8.615850e-47 |
| Msa1181140 | Msa1404050 | 0.816248 | 6.097949e-52 | -8.615850e-47 |
| Msa1181140 | Msa1410800 | 0.808551 | 2.929467e-50 | -8.615850e-47 |
| Msa1181140 | Msa1450440 | 0.822161 | 2.746268e-53 | -8.615850e-47 |
| Msa0517270 | Msa1181140 | 0.809922 | 1.488953e-50 | -8.615850e-47 |
| Msa0558650 | Msa1181140 | 0.801911 | 7.199462e-49 | -8.615850e-47 |
| Msa0567430 | Msa1181140 | 0.801687 | 8.004956e-49 | -8.615850e-47 |
| Msa0567480 | Msa1181140 | 0.821211 | 4.555701e-53 | -8.615850e-47 |
| Msa0567520 | Msa1181140 | 0.817969 | 2.503115e-52 | -8.615850e-47 |
| Msa0576900 | Msa1181140 | 0.839273 | 1.748993e-57 | -8.615850e-47 |
| Msa0599220 | Msa1181140 | 0.824911 | 6.244687e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181140 | MtrunA17_Chr8g0339841 | 96.538 | 260 | 5 | 1 | 1 | 256 | 1 | 260 | 0.0 | 509 |
| Msa1181140 | MtrunA17_Chr7g0235641 | 67.181 | 259 | 68 | 7 | 2 | 256 | 3 | 248 | 2.24e-109 | 315 |
| Msa1181140 | MtrunA17_Chr5g0446701 | 48.529 | 68 | 32 | 2 | 187 | 251 | 2 | 69 | 1.07e-13 | 64.7 |
| Msa1181140 | MtrunA17_Chr4g0058001 | 50.000 | 54 | 27 | 0 | 187 | 240 | 5 | 58 | 1.79e-11 | 58.5 |
| Msa1181140 | MtrunA17_Chr3g0102501 | 42.857 | 70 | 35 | 2 | 187 | 251 | 3 | 72 | 2.81e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1181140 | AT3G25070.2 | 40.385 | 260 | 103 | 10 | 1 | 256 | 13 | 224 | 5.39e-48 | 159 |
| Msa1181140 | AT3G25070.1 | 40.467 | 257 | 101 | 10 | 4 | 256 | 3 | 211 | 6.12e-47 | 155 |
| Msa1181140 | AT5G55850.3 | 55.319 | 47 | 19 | 1 | 187 | 233 | 3 | 47 | 5.77e-11 | 57.8 |
| Msa1181140 | AT5G55850.1 | 55.319 | 47 | 19 | 1 | 187 | 233 | 3 | 47 | 5.89e-11 | 58.9 |
Find 92 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCCCAATTGCCAAATTT+TGG | 0.154307 | 8_1:-15448573 | None:intergenic |
| CGTACTCATGTACCAAAATT+TGG | 0.254594 | 8_1:+15448561 | Msa1181140:CDS |
| GGAACAGCTGCACCTTTATC+AGG | 0.262008 | 8_1:-15449263 | None:intergenic |
| CTCTGAATTGGCTCTGGGTT+TGG | 0.278752 | 8_1:-15448742 | None:intergenic |
| TTGTCAAAATATGCTGTATA+AGG | 0.305310 | 8_1:-15448609 | None:intergenic |
| CCTGAGCTTTGTCATTAGTT+TGG | 0.314715 | 8_1:-15449427 | None:intergenic |
| ATACAGTTAATTTGAATCAT+AGG | 0.335247 | 8_1:-15449995 | None:intergenic |
| AACAAATCTCTTATATATCT+TGG | 0.339953 | 8_1:-15450022 | None:intergenic |
| ATGTACCAAAATTTGGCAAT+TGG | 0.346927 | 8_1:+15448568 | Msa1181140:CDS |
| GTCACAAGTCATAAATTCAT+TGG | 0.353258 | 8_1:-15450057 | None:intergenic |
| CCAGCAGTACTTTGTCTTGA+AGG | 0.363594 | 8_1:-15448936 | None:intergenic |
| GGTGCAGCTGTTCCAAAGTT+TGG | 0.378951 | 8_1:+15449272 | Msa1181140:CDS |
| GAGGAGAGACAGGGTGGGGC+CGG | 0.380564 | 8_1:+15449359 | Msa1181140:CDS |
| ATAACATGCGGCCTCTCATT+AGG | 0.384811 | 8_1:-15449398 | None:intergenic |
| GCCAATTCAGAGGATCTATC+TGG | 0.386827 | 8_1:+15448753 | Msa1181140:CDS |
| ATTGGCTCTGGGTTTGGTAT+TGG | 0.387368 | 8_1:-15448736 | None:intergenic |
| CGGCCTCTCATTAGGTGTGC+CGG | 0.392536 | 8_1:-15449390 | None:intergenic |
| AGAGAGAGCAATTTAGAAAG+AGG | 0.397463 | 8_1:-15446394 | None:intergenic |
| TGTACCAAAATTTGGCAATT+GGG | 0.397658 | 8_1:+15448569 | Msa1181140:CDS |
| TCCAGATAGATCCTCTGAAT+TGG | 0.407045 | 8_1:-15448754 | None:intergenic |
| TGTACCATGGCTGCTGTCAT+AGG | 0.408751 | 8_1:-15449051 | None:intergenic |
| AGGTGTGCCGGGTGCATGTC+CGG | 0.413031 | 8_1:-15449378 | None:intergenic |
| CAAAGTAAGAGAGGAGAGAC+AGG | 0.416279 | 8_1:+15449349 | Msa1181140:CDS |
| TGTTCCAAAGTTTGGTGATT+GGG | 0.423365 | 8_1:+15449280 | Msa1181140:CDS |
| TAGATCCTCTGAATTGGCTC+TGG | 0.423435 | 8_1:-15448748 | None:intergenic |
| CTGTTCCAAAGTTTGGTGAT+TGG | 0.430040 | 8_1:+15449279 | Msa1181140:CDS |
| CCTTCAAGACAAAGTACTGC+TGG | 0.444639 | 8_1:+15448936 | Msa1181140:CDS |
| CTGATGTTGCAGCCTGATAA+AGG | 0.447195 | 8_1:+15449251 | Msa1181140:intron |
| GTTTCATCCCCTCGATTAGC+TGG | 0.459418 | 8_1:-15449095 | None:intergenic |
| GGTCTTAACCGAGATCTTCC+CGG | 0.461138 | 8_1:-15449074 | None:intergenic |
| CTTTGTCATTAGTTTGGTTG+CGG | 0.463206 | 8_1:-15449421 | None:intergenic |
| AAGACGAGGTGTAGAATCAT+TGG | 0.469444 | 8_1:-15448883 | None:intergenic |
| CTGGAAGAGATAGTCCCTCT+TGG | 0.470130 | 8_1:+15449012 | Msa1181140:CDS |
| AAATAATAGTCAAACATAAC+CGG | 0.477212 | 8_1:+15446347 | Msa1181140:five_prime_UTR |
| GGCCTCTCATTAGGTGTGCC+GGG | 0.483664 | 8_1:-15449389 | None:intergenic |
| TCAAACATAACCGGTGGCTC+CGG | 0.483682 | 8_1:+15446356 | Msa1181140:five_prime_UTR |
| ACGGTCACCCCTTCATCGTC+AGG | 0.485020 | 8_1:+15448977 | Msa1181140:CDS |
| ACATCCCAATCACCAAACTT+TGG | 0.494032 | 8_1:-15449284 | None:intergenic |
| GGTTTGGTATTGGAAGGATG+TGG | 0.498106 | 8_1:-15448726 | None:intergenic |
| GAGCTCTAGCCTGACGATGA+AGG | 0.501709 | 8_1:-15448986 | None:intergenic |
| GTATAGCCATCAGCTGATGC+AGG | 0.504777 | 8_1:-15449314 | None:intergenic |
| AAGGCACGGAAAGGTCGAAC+TGG | 0.507439 | 8_1:+15448630 | Msa1181140:CDS |
| TGTATTATGATAAGAAAAGA+AGG | 0.508130 | 8_1:+15449776 | Msa1181140:three_prime_UTR |
| TTGTAATTTGTAAATATCCA+AGG | 0.508977 | 8_1:+15449840 | Msa1181140:three_prime_UTR |
| TGGAAGAGATAGTCCCTCTT+GGG | 0.516000 | 8_1:+15449013 | Msa1181140:CDS |
| TAAGCAATATGTTGACTCTC+CGG | 0.517127 | 8_1:+15448830 | Msa1181140:CDS |
| GGATCTATCTGGAAAGGGAT+TGG | 0.518744 | 8_1:+15448764 | Msa1181140:CDS |
| GCCATGACAATGTAAGCAAT+AGG | 0.523259 | 8_1:+15448856 | Msa1181140:CDS |
| GAGGTTTATCAACCGTTGAC+CGG | 0.523911 | 8_1:-15446375 | None:intergenic |
| GGAGAGTCAACATATTGCTT+AGG | 0.526243 | 8_1:-15448828 | None:intergenic |
| AGCTCTAGCCTGACGATGAA+GGG | 0.528571 | 8_1:-15448985 | None:intergenic |
| TCCTATTGCTTACATTGTCA+TGG | 0.532366 | 8_1:-15448857 | None:intergenic |
| TCAGAGGATCTATCTGGAAA+GGG | 0.538299 | 8_1:+15448759 | Msa1181140:CDS |
| CTTACATTGTCATGGCGAGC+CGG | 0.540021 | 8_1:-15448849 | None:intergenic |
| AGATCCTCTGAATTGGCTCT+GGG | 0.540595 | 8_1:-15448747 | None:intergenic |
| GCTCTGGGTTTGGTATTGGA+AGG | 0.547279 | 8_1:-15448732 | None:intergenic |
| CAACCGTTGACCGGAGCCAC+CGG | 0.548240 | 8_1:-15446366 | None:intergenic |
| TTCAGAGGATCTATCTGGAA+AGG | 0.551409 | 8_1:+15448758 | Msa1181140:CDS |
| ATGGTACACCGGGAAGATCT+CGG | 0.552829 | 8_1:+15449066 | Msa1181140:CDS |
| GGTGGGGCCGGACATGCACC+CGG | 0.553291 | 8_1:+15449371 | Msa1181140:CDS |
| CGTCAGGCTAGAGCTCCTGC+TGG | 0.560727 | 8_1:+15448993 | Msa1181140:CDS |
| CCAAACTAATGACAAAGCTC+AGG | 0.564139 | 8_1:+15449427 | Msa1181140:CDS |
| TAACCGGTGGCTCCGGTCAA+CGG | 0.569706 | 8_1:+15446363 | Msa1181140:five_prime_UTR |
| GACAGCAGCCATGGTACACC+GGG | 0.575291 | 8_1:+15449056 | Msa1181140:CDS |
| GAGGGACTATCTCTTCCAGC+AGG | 0.582014 | 8_1:-15449008 | None:intergenic |
| TTCAATGATGTCTTCCCGCA+AGG | 0.582105 | 8_1:-15449871 | None:intergenic |
| AATTCCTATGACAGCAGCCA+TGG | 0.582281 | 8_1:+15449047 | Msa1181140:CDS |
| TTATTCTTTCCTTCCCAAGA+GGG | 0.587434 | 8_1:-15449026 | None:intergenic |
| GGTCTGAGCACAGCGTTGAA+CGG | 0.589876 | 8_1:+15448958 | Msa1181140:CDS |
| CTTCAAGACAAAGTACTGCT+GGG | 0.593023 | 8_1:+15448937 | Msa1181140:CDS |
| TGACAGCAGCCATGGTACAC+CGG | 0.594877 | 8_1:+15449055 | Msa1181140:CDS |
| CATAATAGTAACACAACAGA+AGG | 0.596117 | 8_1:-15449970 | None:intergenic |
| CCCGCAAGGAACGAAAACCT+TGG | 0.600964 | 8_1:-15449857 | None:intergenic |
| GGTTAAGACCAGCTAATCGA+GGG | 0.601360 | 8_1:+15449087 | Msa1181140:CDS |
| AGTAACCCTGCATCAGCTGA+TGG | 0.613824 | 8_1:+15449308 | Msa1181140:CDS |
| GTTTGGTTGCGGATAACATG+CGG | 0.615150 | 8_1:-15449410 | None:intergenic |
| AAGAGAGGAGAGACAGGGTG+GGG | 0.615205 | 8_1:+15449355 | Msa1181140:CDS |
| GAGATCTTCCCGGTGTACCA+TGG | 0.615868 | 8_1:-15449064 | None:intergenic |
| CGGTTAAGACCAGCTAATCG+AGG | 0.616969 | 8_1:+15449086 | Msa1181140:CDS |
| CACCCGGCACACCTAATGAG+AGG | 0.620241 | 8_1:+15449387 | Msa1181140:CDS |
| GCTCTAGCCTGACGATGAAG+GGG | 0.622879 | 8_1:-15448984 | None:intergenic |
| TAAGAGAGGAGAGACAGGGT+GGG | 0.631626 | 8_1:+15449354 | Msa1181140:CDS |
| TATAGCCATCAGCTGATGCA+GGG | 0.633969 | 8_1:-15449313 | None:intergenic |
| GAGTCGCATAAAAGTCTCGA+TGG | 0.635478 | 8_1:+15448801 | Msa1181140:CDS |
| AGAGATAGTCCCTCTTGGGA+AGG | 0.636769 | 8_1:+15449017 | Msa1181140:CDS |
| ATTATTCTTTCCTTCCCAAG+AGG | 0.649386 | 8_1:-15449027 | None:intergenic |
| TAGTGTTGTGAATGATCATG+AGG | 0.655908 | 8_1:+15449805 | Msa1181140:three_prime_UTR |
| CAAACCCAGAGCCAATTCAG+AGG | 0.659677 | 8_1:+15448743 | Msa1181140:CDS |
| GTAAGAGAGGAGAGACAGGG+TGG | 0.661332 | 8_1:+15449353 | Msa1181140:CDS |
| TAATAGTCAAACATAACCGG+TGG | 0.665855 | 8_1:+15446350 | Msa1181140:five_prime_UTR |
| AAAGTAAGAGAGGAGAGACA+GGG | 0.706360 | 8_1:+15449350 | Msa1181140:CDS |
| GTTAAGACCAGCTAATCGAG+GGG | 0.714196 | 8_1:+15449088 | Msa1181140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAAATTAAGCTTTTTT+TGG | - | chr8_1:15446501-15446520 | None:intergenic | 10.0% |
| !! | ATTTAGTAAATAAATTATGA+TGG | - | chr8_1:15446966-15446985 | None:intergenic | 10.0% |
| !! | TTGTAATAATGATTATATAT+TGG | - | chr8_1:15448335-15448354 | None:intergenic | 10.0% |
| !!! | ATTGTGATTTTTTTTTTTTT+TGG | + | chr8_1:15449947-15449966 | Msa1181140:three_prime_UTR | 10.0% |
| !! | CTCTTATATATTAAAGTATA+TGG | + | chr8_1:15447265-15447284 | Msa1181140:intron | 15.0% |
| !!! | TATTGCAAATCTATAAATTT+TGG | + | chr8_1:15449469-15449488 | Msa1181140:intron | 15.0% |
| !! | AAATAATAGTCAAACATAAC+CGG | + | chr8_1:15446347-15446366 | Msa1181140:five_prime_UTR | 20.0% |
| !! | AAAGAAGTTAAAGTCTAATT+TGG | - | chr8_1:15446723-15446742 | None:intergenic | 20.0% |
| !!! | AATTAGACTTTAACTTCTTT+TGG | + | chr8_1:15446723-15446742 | Msa1181140:intron | 20.0% |
| !! | TCTAACTACAATTATGATTA+TGG | - | chr8_1:15447015-15447034 | None:intergenic | 20.0% |
| !!! | TATTTAGAATGCACATATTT+TGG | + | chr8_1:15447237-15447256 | Msa1181140:intron | 20.0% |
| !!! | ATTTTGAGGAAAAACAATTT+TGG | + | chr8_1:15447462-15447481 | Msa1181140:intron | 20.0% |
| !!! | TTTTGAGGAAAAACAATTTT+GGG | + | chr8_1:15447463-15447482 | Msa1181140:intron | 20.0% |
| !! | AAAAGAGTTAAAGTATGAAT+TGG | + | chr8_1:15447621-15447640 | Msa1181140:intron | 20.0% |
| !!! | ATATCCTTAAATTTTCATGA+TGG | + | chr8_1:15447742-15447761 | Msa1181140:intron | 20.0% |
| !!! | TATCCTTAAATTTTCATGAT+GGG | + | chr8_1:15447743-15447762 | Msa1181140:intron | 20.0% |
| !! | GATTCAATAATCAATTATCT+TGG | - | chr8_1:15448249-15448268 | None:intergenic | 20.0% |
| !! | AGATAATTGATTATTGAATC+TGG | + | chr8_1:15448249-15448268 | Msa1181140:intron | 20.0% |
| !! | TTTATATCGGATTTCAAATT+TGG | - | chr8_1:15448295-15448314 | None:intergenic | 20.0% |
| !! | GATTATATATTGGTATTCTA+GGG | - | chr8_1:15448325-15448344 | None:intergenic | 20.0% |
| !! | TGATTATATATTGGTATTCT+AGG | - | chr8_1:15448326-15448345 | None:intergenic | 20.0% |
| !!! | CTATTTTTTATGTGTTGATT+TGG | + | chr8_1:15448532-15448551 | Msa1181140:intron | 20.0% |
| !! | TGTATTATGATAAGAAAAGA+AGG | + | chr8_1:15449776-15449795 | Msa1181140:three_prime_UTR | 20.0% |
| !!! | TTGTAATTTGTAAATATCCA+AGG | + | chr8_1:15449840-15449859 | Msa1181140:three_prime_UTR | 20.0% |
| !!! | ATACAGTTAATTTGAATCAT+AGG | - | chr8_1:15449998-15450017 | None:intergenic | 20.0% |
| !! | AACAAATCTCTTATATATCT+TGG | - | chr8_1:15450025-15450044 | None:intergenic | 20.0% |
| !!! | TTTTCAAGCTTAGAAGAAAA+TGG | + | chr8_1:15446542-15446561 | Msa1181140:exon | 25.0% |
| !!! | TGTTTTTTTCTTTCTGATCA+TGG | + | chr8_1:15446603-15446622 | Msa1181140:intron | 25.0% |
| !!! | CATCTTCAATTGTTTTGAAA+TGG | + | chr8_1:15446693-15446712 | Msa1181140:intron | 25.0% |
| ! | TCTAAAGAACCAACATAATT+CGG | - | chr8_1:15446869-15446888 | None:intergenic | 25.0% |
| ! | TAGTTTCATATTAATCATGC+TGG | + | chr8_1:15446904-15446923 | Msa1181140:intron | 25.0% |
| ! | GATGGAGTAAAAAAAAAACT+AGG | - | chr8_1:15446948-15446967 | None:intergenic | 25.0% |
| !! | ATGATTATGGATTATCAACA+AGG | - | chr8_1:15447002-15447021 | None:intergenic | 25.0% |
| ! | GTATGAATTATGATTCTCAT+TGG | + | chr8_1:15447184-15447203 | Msa1181140:intron | 25.0% |
| ! | TTAAAATACCATGAATTGTG+TGG | + | chr8_1:15447354-15447373 | Msa1181140:intron | 25.0% |
| ! | ATTGTCTAACAATCATTTGT+TGG | + | chr8_1:15447430-15447449 | Msa1181140:intron | 25.0% |
| ! | TCAATCACAATTAAGATGTA+TGG | - | chr8_1:15447503-15447522 | None:intergenic | 25.0% |
| !!! | CTCTTTTGCTATTAAAAATC+AGG | - | chr8_1:15447608-15447627 | None:intergenic | 25.0% |
| !! | GTCAAAAAGTTCAATACTTT+TGG | + | chr8_1:15447686-15447705 | Msa1181140:intron | 25.0% |
| !!! | CAATACTTTTGGTGATTTTA+CGG | + | chr8_1:15447697-15447716 | Msa1181140:intron | 25.0% |
| ! | AGTTGAGTTTCCATATAAAA+TGG | + | chr8_1:15447918-15447937 | Msa1181140:intron | 25.0% |
| ! | AGTCTTAATAGTGAGATATT+TGG | + | chr8_1:15448179-15448198 | Msa1181140:intron | 25.0% |
| ! | CTAGGGAGATATATTTATAT+CGG | - | chr8_1:15448308-15448327 | None:intergenic | 25.0% |
| ! | ATTATTACAACGAATACAGA+AGG | + | chr8_1:15448345-15448364 | Msa1181140:intron | 25.0% |
| ! | TTGTCAAAATATGCTGTATA+AGG | - | chr8_1:15448612-15448631 | None:intergenic | 25.0% |
| !!! | TTATACAGCATATTTTGACA+AGG | + | chr8_1:15448611-15448630 | Msa1181140:CDS | 25.0% |
| ! | GCATATATATTATTGTACCT+TGG | + | chr8_1:15449181-15449200 | Msa1181140:intron | 25.0% |
| !! | TTGCGAATATGTTATGATTT+TGG | + | chr8_1:15449224-15449243 | Msa1181140:intron | 25.0% |
| ! | AGATTTGCAATATGTTAAAC+AGG | - | chr8_1:15449461-15449480 | None:intergenic | 25.0% |
| ! | AGATTATTACAAGCATCTAT+CGG | + | chr8_1:15449608-15449627 | Msa1181140:intron | 25.0% |
| !! | TGCTGAAGTATTCAATTTTG+TGG | + | chr8_1:15446429-15446448 | Msa1181140:five_prime_UTR | 30.0% |
| ! | TTTTCTTTCTGATCATGGTT+TGG | + | chr8_1:15446608-15446627 | Msa1181140:intron | 30.0% |
| GTTGTATGTGTCTATGATTA+TGG | + | chr8_1:15446635-15446654 | Msa1181140:intron | 30.0% | |
| !!! | GCATGAAAAGTTTCCTTTTT+TGG | + | chr8_1:15446778-15446797 | Msa1181140:intron | 30.0% |
| ! | TGTTTCTAAGAGACCAAAAA+AGG | - | chr8_1:15446794-15446813 | None:intergenic | 30.0% |
| !!! | GAACTATCACAAGTTTTTTG+TGG | + | chr8_1:15447287-15447306 | Msa1181140:intron | 30.0% |
| CTTTACACTAAACTCAAACA+GGG | - | chr8_1:15447392-15447411 | None:intergenic | 30.0% | |
| ! | CTGTTTGAGTTTAGTGTAAA+GGG | + | chr8_1:15447391-15447410 | Msa1181140:intron | 30.0% |
| ! | TTTTTCCTCAAAATCTCACT+AGG | - | chr8_1:15447456-15447475 | None:intergenic | 30.0% |
| AGTGTTCAAATATCATACCT+AGG | + | chr8_1:15447849-15447868 | Msa1181140:intron | 30.0% | |
| GTGTTCAAATATCATACCTA+GGG | + | chr8_1:15447850-15447869 | Msa1181140:intron | 30.0% | |
| AAATTACAACTGCCATTACA+AGG | - | chr8_1:15447887-15447906 | None:intergenic | 30.0% | |
| AGTTTCCATATAAAATGGAG+AGG | + | chr8_1:15447923-15447942 | Msa1181140:intron | 30.0% | |
| GTTTCCATATAAAATGGAGA+GGG | + | chr8_1:15447924-15447943 | Msa1181140:intron | 30.0% | |
| TCCAAAGACACTTAAATTCT+AGG | + | chr8_1:15447958-15447977 | Msa1181140:intron | 30.0% | |
| TCACTATTAAGACTTTGCTT+GGG | - | chr8_1:15448173-15448192 | None:intergenic | 30.0% | |
| ! | ACTTGTATTTTCACTACAGA+AGG | - | chr8_1:15448461-15448480 | None:intergenic | 30.0% |
| ! | AGTGTTTGAAACATGTACTA+TGG | + | chr8_1:15448478-15448497 | Msa1181140:intron | 30.0% |
| ATGTACCAAAATTTGGCAAT+TGG | + | chr8_1:15448568-15448587 | Msa1181140:CDS | 30.0% | |
| TGTACCAAAATTTGGCAATT+GGG | + | chr8_1:15448569-15448588 | Msa1181140:CDS | 30.0% | |
| ! | CTAAATCGACATTTTCTTCA+GGG | - | chr8_1:15448680-15448699 | None:intergenic | 30.0% |
| ! | ACTAAATCGACATTTTCTTC+AGG | - | chr8_1:15448681-15448700 | None:intergenic | 30.0% |
| AAAATATCACGATGATTCCA+AGG | - | chr8_1:15449201-15449220 | None:intergenic | 30.0% | |
| ! | CATTTTCAACAAAGTAAGAG+AGG | + | chr8_1:15449340-15449359 | Msa1181140:CDS | 30.0% |
| TTGCAATATGTTAAACAGGA+GGG | - | chr8_1:15449457-15449476 | None:intergenic | 30.0% | |
| TTTGCAATATGTTAAACAGG+AGG | - | chr8_1:15449458-15449477 | None:intergenic | 30.0% | |
| TACAACACAATACTAACATG+TGG | + | chr8_1:15449559-15449578 | Msa1181140:intron | 30.0% | |
| CATAATAGTAACACAACAGA+AGG | - | chr8_1:15449973-15449992 | None:intergenic | 30.0% | |
| GTCACAAGTCATAAATTCAT+TGG | - | chr8_1:15450060-15450079 | None:intergenic | 30.0% | |
| TAATAGTCAAACATAACCGG+TGG | + | chr8_1:15446350-15446369 | Msa1181140:five_prime_UTR | 35.0% | |
| AGAGAGAGCAATTTAGAAAG+AGG | - | chr8_1:15446397-15446416 | None:intergenic | 35.0% | |
| ! | AATTTTGTGGAAGAGCTTCT+TGG | + | chr8_1:15446442-15446461 | Msa1181140:five_prime_UTR | 35.0% |
| ! | ATTTTGTGGAAGAGCTTCTT+GGG | + | chr8_1:15446443-15446462 | Msa1181140:five_prime_UTR | 35.0% |
| AGCAAAGAACCGAATTATGT+TGG | + | chr8_1:15446857-15446876 | Msa1181140:intron | 35.0% | |
| TTGTTCCTCAACTCAAACAT+GGG | - | chr8_1:15447147-15447166 | None:intergenic | 35.0% | |
| TAACAGAACCACACAATTCA+TGG | - | chr8_1:15447365-15447384 | None:intergenic | 35.0% | |
| CCTTTACACTAAACTCAAAC+AGG | - | chr8_1:15447393-15447412 | None:intergenic | 35.0% | |
| ! | CCTGTTTGAGTTTAGTGTAA+AGG | + | chr8_1:15447390-15447409 | Msa1181140:intron | 35.0% |
| !!! | TTCTGTGTTTTGATCCGAAA+TGG | + | chr8_1:15447573-15447592 | Msa1181140:intron | 35.0% |
| !! | GCAAGATTGTAGTTTTGCTT+AGG | + | chr8_1:15447664-15447683 | Msa1181140:intron | 35.0% |
| CCACCCATCATGAAAATTTA+AGG | - | chr8_1:15447749-15447768 | None:intergenic | 35.0% | |
| !! | CCTTAAATTTTCATGATGGG+TGG | + | chr8_1:15447746-15447765 | Msa1181140:intron | 35.0% |
| GCCTAGAATTTAAGTGTCTT+TGG | - | chr8_1:15447962-15447981 | None:intergenic | 35.0% | |
| TAATCCTATTCAAGGCATGT+CGG | - | chr8_1:15448010-15448029 | None:intergenic | 35.0% | |
| CCTAGAGATAATCCTATTCA+AGG | - | chr8_1:15448018-15448037 | None:intergenic | 35.0% | |
| CCTTGAATAGGATTATCTCT+AGG | + | chr8_1:15448015-15448034 | Msa1181140:intron | 35.0% | |
| CTCACTATTAAGACTTTGCT+TGG | - | chr8_1:15448174-15448193 | None:intergenic | 35.0% | |
| !! | TATTTGGTGTAATCTCTTCC+AGG | + | chr8_1:15448195-15448214 | Msa1181140:intron | 35.0% |
| TAATCAATTATCTTGGTCCC+TGG | - | chr8_1:15448242-15448261 | None:intergenic | 35.0% | |
| TTTCAAATTTGGACCCTTTG+TGG | - | chr8_1:15448284-15448303 | None:intergenic | 35.0% | |
| CGTACTCATGTACCAAAATT+TGG | + | chr8_1:15448561-15448580 | Msa1181140:CDS | 35.0% | |
| ! | ACATTTTCTTCAGGGTCATT+CGG | - | chr8_1:15448672-15448691 | None:intergenic | 35.0% |
| !! | TAAGCAATATGTTGACTCTC+CGG | + | chr8_1:15448830-15448849 | Msa1181140:CDS | 35.0% |
| TCCTATTGCTTACATTGTCA+TGG | - | chr8_1:15448860-15448879 | None:intergenic | 35.0% | |
| ! | TTTGTCTTGAAGGTTTTCGT+CGG | - | chr8_1:15448929-15448948 | None:intergenic | 35.0% |
| TTATTCTTTCCTTCCCAAGA+GGG | - | chr8_1:15449029-15449048 | None:intergenic | 35.0% | |
| ATTATTCTTTCCTTCCCAAG+AGG | - | chr8_1:15449030-15449049 | None:intergenic | 35.0% | |
| ! | TGTTCCAAAGTTTGGTGATT+GGG | + | chr8_1:15449280-15449299 | Msa1181140:CDS | 35.0% |
| ! | CTTTGTCATTAGTTTGGTTG+CGG | - | chr8_1:15449424-15449443 | None:intergenic | 35.0% |
| ! | ACGCATTCAATTTGAAGCAT+CGG | - | chr8_1:15449514-15449533 | None:intergenic | 35.0% |
| CTTCAAATTGAATGCGTTGT+TGG | + | chr8_1:15449517-15449536 | Msa1181140:intron | 35.0% | |
| TAGTGTTGTGAATGATCATG+AGG | + | chr8_1:15449805-15449824 | Msa1181140:three_prime_UTR | 35.0% | |
| ! | CTCAGTTTTTACCTCTTCTG+AGG | + | chr8_1:15446470-15446489 | Msa1181140:five_prime_UTR | 40.0% |
| ! | TTTTGGATCAACCTCAGAAG+AGG | - | chr8_1:15446484-15446503 | None:intergenic | 40.0% |
| GTTGTTCCTCAACTCAAACA+TGG | - | chr8_1:15447148-15447167 | None:intergenic | 40.0% | |
| !! | GTTTGAGTTGAGGAACAACT+TGG | + | chr8_1:15447149-15447168 | Msa1181140:intron | 40.0% |
| AGTTGAGGAACAACTTGGAT+TGG | + | chr8_1:15447154-15447173 | Msa1181140:intron | 40.0% | |
| TTGATCCGAAATGGTAGCAA+AGG | + | chr8_1:15447582-15447601 | Msa1181140:intron | 40.0% | |
| ! | TCTTTCTCAGAGCATCAAAG+TGG | - | chr8_1:15447805-15447824 | None:intergenic | 40.0% |
| TCTGAGAAAGAAAGAGCTTG+AGG | + | chr8_1:15447814-15447833 | Msa1181140:intron | 40.0% | |
| GAAAGAGCTTGAGGAATGAA+AGG | + | chr8_1:15447823-15447842 | Msa1181140:intron | 40.0% | |
| ! | CACACCCTCTCCATTTTATA+TGG | - | chr8_1:15447931-15447950 | None:intergenic | 40.0% |
| CATATAAAATGGAGAGGGTG+TGG | + | chr8_1:15447929-15447948 | Msa1181140:intron | 40.0% | |
| TGTAATCTCTTCCAGGTTCT+AGG | + | chr8_1:15448202-15448221 | Msa1181140:intron | 40.0% | |
| ! | CTCTCCCAATTGCCAAATTT+TGG | - | chr8_1:15448576-15448595 | None:intergenic | 40.0% |
| !!! | CAGCATATTTTGACAAGGCA+CGG | + | chr8_1:15448616-15448635 | Msa1181140:CDS | 40.0% |
| !!! | TATTTTGACAAGGCACGGAA+AGG | + | chr8_1:15448621-15448640 | Msa1181140:CDS | 40.0% |
| ! | CATTTTCTTCAGGGTCATTC+GGG | - | chr8_1:15448671-15448690 | None:intergenic | 40.0% |
| TCCAGATAGATCCTCTGAAT+TGG | - | chr8_1:15448757-15448776 | None:intergenic | 40.0% | |
| TTCAGAGGATCTATCTGGAA+AGG | + | chr8_1:15448758-15448777 | Msa1181140:CDS | 40.0% | |
| TCAGAGGATCTATCTGGAAA+GGG | + | chr8_1:15448759-15448778 | Msa1181140:CDS | 40.0% | |
| GGAGAGTCAACATATTGCTT+AGG | - | chr8_1:15448831-15448850 | None:intergenic | 40.0% | |
| GCCATGACAATGTAAGCAAT+AGG | + | chr8_1:15448856-15448875 | Msa1181140:CDS | 40.0% | |
| AAGACGAGGTGTAGAATCAT+TGG | - | chr8_1:15448886-15448905 | None:intergenic | 40.0% | |
| AATGATTCTACACCTCGTCT+TGG | + | chr8_1:15448885-15448904 | Msa1181140:intron | 40.0% | |
| !! | CTTCAAGACAAAGTACTGCT+GGG | + | chr8_1:15448937-15448956 | Msa1181140:CDS | 40.0% |
| TGCATGGTGATAACATAGGA+TGG | - | chr8_1:15449140-15449159 | None:intergenic | 40.0% | |
| TCCTATGTTATCACCATGCA+TGG | + | chr8_1:15449140-15449159 | Msa1181140:intron | 40.0% | |
| TTTACTCTTCATGCCATGCA+TGG | - | chr8_1:15449156-15449175 | None:intergenic | 40.0% | |
| ! | CTGTTCCAAAGTTTGGTGAT+TGG | + | chr8_1:15449279-15449298 | Msa1181140:CDS | 40.0% |
| ACATCCCAATCACCAAACTT+TGG | - | chr8_1:15449287-15449306 | None:intergenic | 40.0% | |
| AAAGTAAGAGAGGAGAGACA+GGG | + | chr8_1:15449350-15449369 | Msa1181140:CDS | 40.0% | |
| ! | CCTGAGCTTTGTCATTAGTT+TGG | - | chr8_1:15449430-15449449 | None:intergenic | 40.0% |
| CCAAACTAATGACAAAGCTC+AGG | + | chr8_1:15449427-15449446 | Msa1181140:CDS | 40.0% | |
| ! | CTATCGGTTAGTATTGTGTC+TGG | + | chr8_1:15449624-15449643 | Msa1181140:intron | 40.0% |
| GTTAGTATTGTGTCTGGTGT+CGG | + | chr8_1:15449630-15449649 | Msa1181140:intron | 40.0% | |
| GGTGAAAAACTATGAAGCAC+TGG | - | chr8_1:15449664-15449683 | None:intergenic | 40.0% | |
| CGCAACGATAAGCATTAGTA+CGG | - | chr8_1:15449685-15449704 | None:intergenic | 40.0% | |
| ! | TGGGGCAAAAAGTGATTTGT+TGG | + | chr8_1:15449742-15449761 | Msa1181140:exon | 40.0% |
| GAGGTTTATCAACCGTTGAC+CGG | - | chr8_1:15446378-15446397 | None:intergenic | 45.0% | |
| !! | GCAATCCCATGTTTGAGTTG+AGG | + | chr8_1:15447139-15447158 | Msa1181140:intron | 45.0% |
| ! | GGAACAACTTGGATTGGATG+AGG | + | chr8_1:15447160-15447179 | Msa1181140:intron | 45.0% |
| !! | GTTGGCCTAGTGAGATTTTG+AGG | + | chr8_1:15447448-15447467 | Msa1181140:intron | 45.0% |
| TCAGGCCTTTGCTACCATTT+CGG | - | chr8_1:15447590-15447609 | None:intergenic | 45.0% | |
| !! | TTCATGATGGGTGGAAGCAA+TGG | + | chr8_1:15447755-15447774 | Msa1181140:intron | 45.0% |
| GGAAGCAATGGAGGACATAA+TGG | + | chr8_1:15447767-15447786 | Msa1181140:intron | 45.0% | |
| TACAACTGCCATTACAAGGC+TGG | - | chr8_1:15447883-15447902 | None:intergenic | 45.0% | |
| CTTAAATTCTAGGCCGAGAG+AGG | + | chr8_1:15447968-15447987 | Msa1181140:intron | 45.0% | |
| CTGAATGTGGATACCTCTCT+CGG | - | chr8_1:15447984-15448003 | None:intergenic | 45.0% | |
| ! | TAGGAAGTGTAGCAGTTACC+AGG | + | chr8_1:15448221-15448240 | Msa1181140:intron | 45.0% |
| ! | AGGAAGTGTAGCAGTTACCA+GGG | + | chr8_1:15448222-15448241 | Msa1181140:intron | 45.0% |
| ! | GGTTTGGTATTGGAAGGATG+TGG | - | chr8_1:15448729-15448748 | None:intergenic | 45.0% |
| !! | ATTGGCTCTGGGTTTGGTAT+TGG | - | chr8_1:15448739-15448758 | None:intergenic | 45.0% |
| ! | AGATCCTCTGAATTGGCTCT+GGG | - | chr8_1:15448750-15448769 | None:intergenic | 45.0% |
| ! | TAGATCCTCTGAATTGGCTC+TGG | - | chr8_1:15448751-15448770 | None:intergenic | 45.0% |
| GCCAATTCAGAGGATCTATC+TGG | + | chr8_1:15448753-15448772 | Msa1181140:CDS | 45.0% | |
| GGATCTATCTGGAAAGGGAT+TGG | + | chr8_1:15448764-15448783 | Msa1181140:CDS | 45.0% | |
| GAGTCGCATAAAAGTCTCGA+TGG | + | chr8_1:15448801-15448820 | Msa1181140:CDS | 45.0% | |
| CCAGCAGTACTTTGTCTTGA+AGG | - | chr8_1:15448939-15448958 | None:intergenic | 45.0% | |
| !! | CCTTCAAGACAAAGTACTGC+TGG | + | chr8_1:15448936-15448955 | Msa1181140:CDS | 45.0% |
| TGGAAGAGATAGTCCCTCTT+GGG | + | chr8_1:15449013-15449032 | Msa1181140:CDS | 45.0% | |
| AATTCCTATGACAGCAGCCA+TGG | + | chr8_1:15449047-15449066 | Msa1181140:CDS | 45.0% | |
| GGTTAAGACCAGCTAATCGA+GGG | + | chr8_1:15449087-15449106 | Msa1181140:CDS | 45.0% | |
| GTTAAGACCAGCTAATCGAG+GGG | + | chr8_1:15449088-15449107 | Msa1181140:CDS | 45.0% | |
| GCCATGCATGGTGATAACAT+AGG | - | chr8_1:15449144-15449163 | None:intergenic | 45.0% | |
| CTGATGTTGCAGCCTGATAA+AGG | + | chr8_1:15449251-15449270 | Msa1181140:intron | 45.0% | |
| TATAGCCATCAGCTGATGCA+GGG | - | chr8_1:15449316-15449335 | None:intergenic | 45.0% | |
| CAAAGTAAGAGAGGAGAGAC+AGG | + | chr8_1:15449349-15449368 | Msa1181140:CDS | 45.0% | |
| ATAACATGCGGCCTCTCATT+AGG | - | chr8_1:15449401-15449420 | None:intergenic | 45.0% | |
| GTTTGGTTGCGGATAACATG+CGG | - | chr8_1:15449413-15449432 | None:intergenic | 45.0% | |
| !!! | TCCAGTGTTGCTGTTTTGCT+TGG | + | chr8_1:15449722-15449741 | Msa1181140:intron | 45.0% |
| !!! | CCAGTGTTGCTGTTTTGCTT+GGG | + | chr8_1:15449723-15449742 | Msa1181140:intron | 45.0% |
| !!! | CAGTGTTGCTGTTTTGCTTG+GGG | + | chr8_1:15449724-15449743 | Msa1181140:intron | 45.0% |
| ! | TCCAAGGTTTTCGTTCCTTG+CGG | + | chr8_1:15449856-15449875 | Msa1181140:three_prime_UTR | 45.0% |
| TTCAATGATGTCTTCCCGCA+AGG | - | chr8_1:15449874-15449893 | None:intergenic | 45.0% | |
| !! | TTATTTAAAAATTATAACAA+AGG | + | chr8_1:15448404-15448423 | Msa1181140:intron | 5.0% |
| TCAAACATAACCGGTGGCTC+CGG | + | chr8_1:15446356-15446375 | Msa1181140:five_prime_UTR | 50.0% | |
| !! | ATGATGGGTGGAAGCAATGG+AGG | + | chr8_1:15447758-15447777 | Msa1181140:intron | 50.0% |
| ! | TGCCATTACAAGGCTGGCTA+GGG | - | chr8_1:15447877-15447896 | None:intergenic | 50.0% |
| GTGTCCGACATGCCTTGAAT+AGG | + | chr8_1:15448003-15448022 | Msa1181140:intron | 50.0% | |
| CTGCTACACTTCCTAGAACC+TGG | - | chr8_1:15448216-15448235 | None:intergenic | 50.0% | |
| ! | TCTGGTTCGCAAGACCACAA+AGG | + | chr8_1:15448267-15448286 | Msa1181140:intron | 50.0% |
| ! | CTGGTTCGCAAGACCACAAA+GGG | + | chr8_1:15448268-15448287 | Msa1181140:intron | 50.0% |
| ! | GCTCTGGGTTTGGTATTGGA+AGG | - | chr8_1:15448735-15448754 | None:intergenic | 50.0% |
| !! | CTCTGAATTGGCTCTGGGTT+TGG | - | chr8_1:15448745-15448764 | None:intergenic | 50.0% |
| CAAACCCAGAGCCAATTCAG+AGG | + | chr8_1:15448743-15448762 | Msa1181140:CDS | 50.0% | |
| CTTACATTGTCATGGCGAGC+CGG | - | chr8_1:15448852-15448871 | None:intergenic | 50.0% | |
| TCTACACCTCGTCTTGGAGT+AGG | + | chr8_1:15448891-15448910 | Msa1181140:intron | 50.0% | |
| ! | AGCTCTAGCCTGACGATGAA+GGG | - | chr8_1:15448988-15449007 | None:intergenic | 50.0% |
| CTGGAAGAGATAGTCCCTCT+TGG | + | chr8_1:15449012-15449031 | Msa1181140:CDS | 50.0% | |
| AGAGATAGTCCCTCTTGGGA+AGG | + | chr8_1:15449017-15449036 | Msa1181140:CDS | 50.0% | |
| TGTACCATGGCTGCTGTCAT+AGG | - | chr8_1:15449054-15449073 | None:intergenic | 50.0% | |
| ATGGTACACCGGGAAGATCT+CGG | + | chr8_1:15449066-15449085 | Msa1181140:CDS | 50.0% | |
| GGTCTTAACCGAGATCTTCC+CGG | - | chr8_1:15449077-15449096 | None:intergenic | 50.0% | |
| CGGTTAAGACCAGCTAATCG+AGG | + | chr8_1:15449086-15449105 | Msa1181140:CDS | 50.0% | |
| GTTTCATCCCCTCGATTAGC+TGG | - | chr8_1:15449098-15449117 | None:intergenic | 50.0% | |
| GGAACAGCTGCACCTTTATC+AGG | - | chr8_1:15449266-15449285 | None:intergenic | 50.0% | |
| GGTGCAGCTGTTCCAAAGTT+TGG | + | chr8_1:15449272-15449291 | Msa1181140:CDS | 50.0% | |
| AGTAACCCTGCATCAGCTGA+TGG | + | chr8_1:15449308-15449327 | Msa1181140:CDS | 50.0% | |
| GTATAGCCATCAGCTGATGC+AGG | - | chr8_1:15449317-15449336 | None:intergenic | 50.0% | |
| TAAGAGAGGAGAGACAGGGT+GGG | + | chr8_1:15449354-15449373 | Msa1181140:CDS | 50.0% | |
| CCCAAGCAAAACAGCAACAC+TGG | - | chr8_1:15449726-15449745 | None:intergenic | 50.0% | |
| ! | CCAAGGTTTTCGTTCCTTGC+GGG | + | chr8_1:15449857-15449876 | Msa1181140:three_prime_UTR | 50.0% |
| ! | GTCCCTAGCCAGCCTTGTAA+TGG | + | chr8_1:15447872-15447891 | Msa1181140:intron | 55.0% |
| ! | CTGCCATTACAAGGCTGGCT+AGG | - | chr8_1:15447878-15447897 | None:intergenic | 55.0% |
| GGCATGTCGGACACTGAATG+TGG | - | chr8_1:15447997-15448016 | None:intergenic | 55.0% | |
| AAGGCACGGAAAGGTCGAAC+TGG | + | chr8_1:15448630-15448649 | Msa1181140:CDS | 55.0% | |
| GCAGAACCTACTCCAAGACG+AGG | - | chr8_1:15448900-15448919 | None:intergenic | 55.0% | |
| ! | GGTCTGAGCACAGCGTTGAA+CGG | + | chr8_1:15448958-15448977 | Msa1181140:CDS | 55.0% |
| GCTCTAGCCTGACGATGAAG+GGG | - | chr8_1:15448987-15449006 | None:intergenic | 55.0% | |
| ! | GAGCTCTAGCCTGACGATGA+AGG | - | chr8_1:15448989-15449008 | None:intergenic | 55.0% |
| GAGGGACTATCTCTTCCAGC+AGG | - | chr8_1:15449011-15449030 | None:intergenic | 55.0% | |
| TGACAGCAGCCATGGTACAC+CGG | + | chr8_1:15449055-15449074 | Msa1181140:CDS | 55.0% | |
| GAGATCTTCCCGGTGTACCA+TGG | - | chr8_1:15449067-15449086 | None:intergenic | 55.0% | |
| GTAAGAGAGGAGAGACAGGG+TGG | + | chr8_1:15449353-15449372 | Msa1181140:CDS | 55.0% | |
| AAGAGAGGAGAGACAGGGTG+GGG | + | chr8_1:15449355-15449374 | Msa1181140:CDS | 55.0% | |
| CCCGCAAGGAACGAAAACCT+TGG | - | chr8_1:15449860-15449879 | None:intergenic | 55.0% | |
| TAACCGGTGGCTCCGGTCAA+CGG | + | chr8_1:15446363-15446382 | Msa1181140:five_prime_UTR | 60.0% | |
| ACGGTCACCCCTTCATCGTC+AGG | + | chr8_1:15448977-15448996 | Msa1181140:CDS | 60.0% | |
| GACAGCAGCCATGGTACACC+GGG | + | chr8_1:15449056-15449075 | Msa1181140:CDS | 60.0% | |
| CACCCGGCACACCTAATGAG+AGG | + | chr8_1:15449387-15449406 | Msa1181140:CDS | 60.0% | |
| GGCCTCTCATTAGGTGTGCC+GGG | - | chr8_1:15449392-15449411 | None:intergenic | 60.0% | |
| CGGCCTCTCATTAGGTGTGC+CGG | - | chr8_1:15449393-15449412 | None:intergenic | 60.0% | |
| CAACCGTTGACCGGAGCCAC+CGG | - | chr8_1:15446369-15446388 | None:intergenic | 65.0% | |
| ! | CAAGGCTGGCTAGGGACCCT+AGG | - | chr8_1:15447869-15447888 | None:intergenic | 65.0% |
| CGTCAGGCTAGAGCTCCTGC+TGG | + | chr8_1:15448993-15449012 | Msa1181140:CDS | 65.0% | |
| AGGTGTGCCGGGTGCATGTC+CGG | - | chr8_1:15449381-15449400 | None:intergenic | 65.0% | |
| GAGGAGAGACAGGGTGGGGC+CGG | + | chr8_1:15449359-15449378 | Msa1181140:CDS | 70.0% | |
| GGTGGGGCCGGACATGCACC+CGG | + | chr8_1:15449371-15449390 | Msa1181140:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 15446345 | 15450079 | 15446345 | ID=Msa1181140;Name=Msa1181140 |
| chr8_1 | mRNA | 15446345 | 15450079 | 15446345 | ID=Msa1181140-mRNA-1;Parent=Msa1181140;Name=Msa1181140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=216|0.75|0.6|1|0.5|0.6|5|323|256 |
| chr8_1 | exon | 15446345 | 15446566 | 15446345 | ID=Msa1181140-mRNA-1:exon:5771;Parent=Msa1181140-mRNA-1 |
| chr8_1 | exon | 15448558 | 15448900 | 15448558 | ID=Msa1181140-mRNA-1:exon:5772;Parent=Msa1181140-mRNA-1 |
| chr8_1 | exon | 15448913 | 15449118 | 15448913 | ID=Msa1181140-mRNA-1:exon:5773;Parent=Msa1181140-mRNA-1 |
| chr8_1 | exon | 15449263 | 15449448 | 15449263 | ID=Msa1181140-mRNA-1:exon:5774;Parent=Msa1181140-mRNA-1 |
| chr8_1 | exon | 15449727 | 15450079 | 15449727 | ID=Msa1181140-mRNA-1:exon:5775;Parent=Msa1181140-mRNA-1 |
| chr8_1 | five_prime_UTR | 15446345 | 15446560 | 15446345 | ID=Msa1181140-mRNA-1:five_prime_utr;Parent=Msa1181140-mRNA-1 |
| chr8_1 | CDS | 15446561 | 15446566 | 15446561 | ID=Msa1181140-mRNA-1:cds;Parent=Msa1181140-mRNA-1 |
| chr8_1 | CDS | 15448558 | 15448900 | 15448558 | ID=Msa1181140-mRNA-1:cds;Parent=Msa1181140-mRNA-1 |
| chr8_1 | CDS | 15448913 | 15449118 | 15448913 | ID=Msa1181140-mRNA-1:cds;Parent=Msa1181140-mRNA-1 |
| chr8_1 | CDS | 15449263 | 15449448 | 15449263 | ID=Msa1181140-mRNA-1:cds;Parent=Msa1181140-mRNA-1 |
| chr8_1 | CDS | 15449727 | 15449756 | 15449727 | ID=Msa1181140-mRNA-1:cds;Parent=Msa1181140-mRNA-1 |
| chr8_1 | three_prime_UTR | 15449757 | 15450079 | 15449757 | ID=Msa1181140-mRNA-1:three_prime_utr;Parent=Msa1181140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
