AlfalfaGEDB | Msa0822380

M. sativa cultivar zhongmu-4 / Msa0822380

KEGG: K02291
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00494.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0822380	AIT98180.1	99.227	388	3	0	1	388	1	388	0.0	795

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0822380	sp\|Q9SSU8\|PSY_DAUCA	71.100	391	99	3	3	379	4	394	0.0	565

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0822380	A0A097KXR7	99.227	388	3	0	1	388	1	388	0.0	795

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0028610	Msa0822380	0.816807	4.570372e-52	-8.615850e-47
Msa0030710	Msa0822380	0.837651	4.584972e-57	-8.615850e-47
Msa0038860	Msa0822380	0.858152	1.002145e-62	-8.615850e-47
Msa0076280	Msa0822380	0.832985	6.913336e-56	-8.615850e-47
Msa0078110	Msa0822380	0.823755	1.167343e-53	-8.615850e-47
Msa0083200	Msa0822380	0.825496	4.541576e-54	-8.615850e-47
Msa0086460	Msa0822380	0.816372	5.722657e-52	-8.615850e-47
Msa0124310	Msa0822380	0.811356	7.292673e-51	-8.615850e-47
Msa0168680	Msa0822380	0.801139	1.036619e-48	-8.615850e-47
Msa0170640	Msa0822380	0.802162	6.393776e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0822380	MtrunA17_Chr5g0442671	95.876	388	16	0	1	388	1	388	0.0	776
Msa0822380	MtrunA17_Chr3g0095661	80.151	398	66	4	1	388	1	395	0.0	646
Msa0822380	MtrunA17_Chr5g0433601	75.444	338	79	2	45	381	95	429	0.0	534
Msa0822380	MtrunA17_Chr3g0121311	64.634	328	108	2	53	380	57	376	8.07e-156	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0822380	AT5G17230.2	75.138	362	74	4	24	377	60	413	553
Msa0822380	AT5G17230.1	75.138	362	74	4	24	377	60	413	553
Msa0822380	AT5G17230.4	75.138	362	74	4	24	377	60	413	553
Msa0822380	AT5G17230.3	72.149	377	74	5	24	377	60	428	544

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Find 90 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTATATGGGCAATCTA+TGG	0.391917	5_3:-60727799	Msa0822380:intron
AAATGGAGAAATTTCATGAA+GGG	0.583483	5_3:-60725322	Msa0822380:CDS
AACAACAATGCTGCCCACAC+AGG	0.638058	5_3:+60725223	None:intergenic
AACAATTTGGTTAACTCTTT+AGG	0.243453	5_3:+60725076	None:intergenic
AAGAACGCCGAAAAGCTATA+TGG	0.335633	5_3:-60727810	Msa0822380:CDS
AAGAGAAAAGAGTGTAAGAA+TGG	0.370228	5_3:-60729209	Msa0822380:CDS
AATGCTCTCTGTAGAAGCCT+TGG	0.487506	5_3:+60726750	None:intergenic
AATTCTGCTTATGATCGGTG+TGG	0.729934	5_3:-60729001	Msa0822380:CDS
ACACATCACACCAGCAGCCT+TGG	0.504549	5_3:-60727595	Msa0822380:CDS
ACCAATATACTCAGAGATGT+TGG	0.528223	5_3:-60726688	Msa0822380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGACACTATAAAAAAGAGA+GGG	+	chr5_3:60725048-60725067	None:intergenic	30.0%
GAATTGTGATGCAAAATCAT+TGG	-	chr5_3:60725128-60725147	Msa0822380:CDS	30.0%
AATACCTAGGTAAAAAGTCT+TGG	+	chr5_3:60725427-60725446	None:intergenic	30.0%
CCAATGAAACTTACGAAAAA+TGG	+	chr5_3:60725562-60725581	None:intergenic	30.0%
TCTTCATTCTTGAATATGTG+TGG	+	chr5_3:60725599-60725618	None:intergenic	30.0%
ACTGAGTCTATGAAAGTTAT+TGG	-	chr5_3:60725793-60725812	Msa0822380:intron	30.0%
CTGAGTCTATGAAAGTTATT+GGG	-	chr5_3:60725794-60725813	Msa0822380:intron	30.0%
AATGAGTCAATGGAAGTTAA+AGG	-	chr5_3:60725819-60725838	Msa0822380:intron	30.0%
TTTCATGGAGTTATTATGAG+AGG	-	chr5_3:60726076-60726095	Msa0822380:intron	30.0%
GTTAGGAAAGCAATTAAGTT+AGG	-	chr5_3:60726349-60726368	Msa0822380:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	60724875	60729529	60724875	ID=Msa0822380;Name=Msa0822380
chr5_3	mRNA	60724875	60729529	60724875	ID=Msa0822380-mRNA-1;Parent=Msa0822380;Name=Msa0822380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=230\|1\|1\|1\|1\|1\|5\|191\|388
chr5_3	exon	60724875	60725435	60724875	ID=Msa0822380-mRNA-1:exon:18674;Parent=Msa0822380-mRNA-1
chr5_3	exon	60726682	60726917	60726682	ID=Msa0822380-mRNA-1:exon:18673;Parent=Msa0822380-mRNA-1
chr5_3	exon	60727491	60727663	60727491	ID=Msa0822380-mRNA-1:exon:18672;Parent=Msa0822380-mRNA-1
chr5_3	exon	60727800	60727850	60727800	ID=Msa0822380-mRNA-1:exon:18671;Parent=Msa0822380-mRNA-1
chr5_3	exon	60728963	60729529	60728963	ID=Msa0822380-mRNA-1:exon:18670;Parent=Msa0822380-mRNA-1
chr5_3	five_prime_UTR	60729300	60729529	60729300	ID=Msa0822380-mRNA-1:five_prime_utr;Parent=Msa0822380-mRNA-1
chr5_3	CDS	60728963	60729299	60728963	ID=Msa0822380-mRNA-1:cds;Parent=Msa0822380-mRNA-1
chr5_3	CDS	60727800	60727850	60727800	ID=Msa0822380-mRNA-1:cds;Parent=Msa0822380-mRNA-1
chr5_3	CDS	60727491	60727663	60727491	ID=Msa0822380-mRNA-1:cds;Parent=Msa0822380-mRNA-1
chr5_3	CDS	60726682	60726917	60726682	ID=Msa0822380-mRNA-1:cds;Parent=Msa0822380-mRNA-1
chr5_3	CDS	60725066	60725435	60725066	ID=Msa0822380-mRNA-1:cds;Parent=Msa0822380-mRNA-1
chr5_3	three_prime_UTR	60724875	60725065	60724875	ID=Msa0822380-mRNA-1:three_prime_utr;Parent=Msa0822380-mRNA-1

Gene Sequence

>Msa0822380

ATGTCTAGTATTGTTGTTAGGGTGAATTGTGATGCAAAATCATTGGTGGGTATTTCTAGAATTGGAAGAAGAGAAAAGAGTGTAAGAATGGGTTCTAGGATAAGGTTTGGAAGTGGGGGTGCAGTGGTAGCAGAACCTTCAAGAAGTTCAGAGGAGAGGGTGTATGAAGTAGTTTTGAAGCAAGCAGGTTTGGTGAGAGAAGATAGGAGGGGTGCAAATATAGAATTTGATTTTGAGAAAACAATTGAAGGTGATTTTAGCAATGGAGATTTATTGAATTCTGCTTATGATCGGTGTGGTGAAGTTTGTGCTGAATATGCCAAGACTTTTTACCTAGGTACACAATTGATGACACAAGAACGCCGAAAAGCTATATGGGCAATCTATGTATGGTGTAGAAGAACTGATGAACTAGTAGATGGCCCAAATGCTTCACACATCACACCAGCAGCCTTGGACAGATGGGAGCAACGGTTAACTGATGTTTTTGAATGTCGACCATATGATATGTTTGATGCTGCTCTCTCACACACTGTCTCTAAGTACCCTGTTGATATTCAGCCATTCAAGGACATGATAGAAGGGATGAGGATGGATTTGAGAAAGTCAAGATACAACAACTTTGATGAGCTCTACCTTTATTGTTACTATGTTGCTGGGACAGTAGGTCTTATGAGTGTTCCTGTAATGGGAATAGCACCTGAATCCAAGGCTTCTACAGAGAGCATTTATAATGCTGCATTGGCACTAGGCATTGCAAATCAACTCACCAATATACTCAGAGATGTTGGAGAAGATGCTAGAAGAGGAAGAGTGTATCTCCCTCAAGATGAGCTAGCACAAGCTGGCCTATCAGATGAAGACATTATGCGTGGAAAAGTAACAGACAAATGGAGAAATTTCATGAAGGGACAAATAAAAAGGGCAAGAATGTTCTTTGATGAAGCAGAAAAGGGTGTCTCAGAGCTCAGTTCTGCTAGTAGATGGCCTGTGTGGGCAGCATTGTTGTTATATAGGCAGATATTAGATTCTATTGAAGCCAATGATTATAATAACTTCACAAAAAGGGCTTATGTTGGAAAAGTCAATAAGCTATTATCACTACCAGCTGCTTATGGAACTGCACTTTTAGGTCCTAAAGAGTTAACCAAATTGTTTATGAGATGA

Protein sequence

>Msa0822380

MSSIVVRVNCDAKSLVGISRIGRREKSVRMGSRIRFGSGGAVVAEPSRSSEERVYEVVLKQAGLVREDRRGANIEFDFEKTIEGDFSNGDLLNSAYDRCGEVCAEYAKTFYLGTQLMTQERRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEQRLTDVFECRPYDMFDAALSHTVSKYPVDIQPFKDMIEGMRMDLRKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESIYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIMRGKVTDKWRNFMKGQIKRARMFFDEAEKGVSELSSASRWPVWAALLLYRQILDSIEANDYNNFTKRAYVGKVNKLLSLPAAYGTALLGPKELTKLFMR*