Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0822380 | AIT98180.1 | 99.227 | 388 | 3 | 0 | 1 | 388 | 1 | 388 | 0.0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0822380 | sp|Q9SSU8|PSY_DAUCA | 71.100 | 391 | 99 | 3 | 3 | 379 | 4 | 394 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0822380 | A0A097KXR7 | 99.227 | 388 | 3 | 0 | 1 | 388 | 1 | 388 | 0.0 | 795 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028610 | Msa0822380 | 0.816807 | 4.570372e-52 | -8.615850e-47 |
| Msa0030710 | Msa0822380 | 0.837651 | 4.584972e-57 | -8.615850e-47 |
| Msa0038860 | Msa0822380 | 0.858152 | 1.002145e-62 | -8.615850e-47 |
| Msa0076280 | Msa0822380 | 0.832985 | 6.913336e-56 | -8.615850e-47 |
| Msa0078110 | Msa0822380 | 0.823755 | 1.167343e-53 | -8.615850e-47 |
| Msa0083200 | Msa0822380 | 0.825496 | 4.541576e-54 | -8.615850e-47 |
| Msa0086460 | Msa0822380 | 0.816372 | 5.722657e-52 | -8.615850e-47 |
| Msa0617010 | Msa0822380 | 0.824044 | 9.986808e-54 | -8.615850e-47 |
| Msa0622800 | Msa0822380 | 0.804242 | 2.373048e-49 | -8.615850e-47 |
| Msa0625510 | Msa0822380 | 0.842808 | 2.062574e-58 | -8.615850e-47 |
| Msa0652270 | Msa0822380 | 0.800348 | 1.503461e-48 | -8.615850e-47 |
| Msa0694810 | Msa0822380 | 0.830048 | 3.655952e-55 | -8.615850e-47 |
| Msa0704750 | Msa0822380 | 0.815963 | 7.060822e-52 | -8.615850e-47 |
| Msa0707870 | Msa0822380 | 0.807918 | 3.996175e-50 | -8.615850e-47 |
| Msa0786970 | Msa0822380 | 0.943746 | 6.887733e-103 | -8.615850e-47 |
| Msa0794040 | Msa0822380 | 0.819389 | 1.191378e-52 | -8.615850e-47 |
| Msa0799150 | Msa0822380 | 0.810718 | 1.002713e-50 | -8.615850e-47 |
| Msa0807840 | Msa0822380 | 0.820559 | 6.435672e-53 | -8.615850e-47 |
| Msa0811710 | Msa0822380 | 0.808345 | 3.241111e-50 | -8.615850e-47 |
| Msa0822380 | Msa0883880 | 0.802915 | 4.471779e-49 | -8.615850e-47 |
| Msa0822380 | Msa0907520 | 0.844201 | 8.756513e-59 | -8.615850e-47 |
| Msa0822380 | Msa0940400 | 0.850034 | 2.203780e-60 | -8.615850e-47 |
| Msa0822380 | Msa0982220 | 0.806812 | 6.857584e-50 | -8.615850e-47 |
| Msa0822380 | Msa1044520 | 0.876034 | 1.923570e-68 | -8.615850e-47 |
| Msa0822380 | Msa1051410 | 0.825520 | 4.481641e-54 | -8.615850e-47 |
| Msa0822380 | Msa1084630 | 0.971627 | 1.836381e-133 | -8.615850e-47 |
| Msa0822380 | Msa1132320 | 0.809081 | 2.256971e-50 | -8.615850e-47 |
| Msa0822380 | Msa1190320 | 0.809061 | 2.279740e-50 | -8.615850e-47 |
| Msa0822380 | Msa1197210 | 0.806533 | 7.854208e-50 | -8.615850e-47 |
| Msa0822380 | Msa1199690 | 0.821786 | 3.354460e-53 | -8.615850e-47 |
| Msa0822380 | Msa1204260 | 0.804361 | 2.241641e-49 | -8.615850e-47 |
| Msa0822380 | Msa1226330 | 0.809678 | 1.680640e-50 | -8.615850e-47 |
| Msa0822380 | Msa1264300 | 0.879302 | 1.392461e-69 | -8.615850e-47 |
| Msa0822380 | Msa1267800 | 0.800781 | 1.226574e-48 | -8.615850e-47 |
| Msa0822380 | Msa1269290 | -0.803999 | 2.666429e-49 | -8.615850e-47 |
| Msa0822380 | Msa1334350 | 0.855173 | 7.536500e-62 | -8.615850e-47 |
| Msa0822380 | Msa1351380 | 0.840491 | 8.423963e-58 | -8.615850e-47 |
| Msa0822380 | Msa1354380 | 0.821525 | 3.855609e-53 | -8.615850e-47 |
| Msa0822380 | Msa1368280 | 0.807595 | 4.682444e-50 | -8.615850e-47 |
| Msa0822380 | Msa1392650 | 0.807577 | 4.722007e-50 | -8.615850e-47 |
| Msa0822380 | Msa1400330 | 0.971212 | 8.276244e-133 | -8.615850e-47 |
| Msa0822380 | Msa1402340 | 0.852101 | 5.756386e-61 | -8.615850e-47 |
| Msa0822380 | Msa1412450 | 0.806839 | 6.769820e-50 | -8.615850e-47 |
| Msa0822380 | Msa1427900 | 0.804583 | 2.014963e-49 | -8.615850e-47 |
| Msa0822380 | Msa1455000 | 0.801003 | 1.104965e-48 | -8.615850e-47 |
| Msa0124310 | Msa0822380 | 0.811356 | 7.292673e-51 | -8.615850e-47 |
| Msa0168680 | Msa0822380 | 0.801139 | 1.036619e-48 | -8.615850e-47 |
| Msa0170640 | Msa0822380 | 0.802162 | 6.393776e-49 | -8.615850e-47 |
| Msa0177450 | Msa0822380 | -0.808555 | 2.923505e-50 | -8.615850e-47 |
| Msa0181740 | Msa0822380 | 0.863303 | 2.740387e-64 | -8.615850e-47 |
| Msa0186750 | Msa0822380 | 0.812087 | 5.058318e-51 | -8.615850e-47 |
| Msa0187720 | Msa0822380 | 0.800552 | 1.366141e-48 | -8.615850e-47 |
| Msa0190710 | Msa0822380 | 0.801019 | 1.096933e-48 | -8.615850e-47 |
| Msa0192290 | Msa0822380 | -0.809574 | 1.769360e-50 | -8.615850e-47 |
| Msa0196700 | Msa0822380 | 0.845433 | 4.075012e-59 | -8.615850e-47 |
| Msa0196710 | Msa0822380 | 0.841921 | 3.543331e-58 | -8.615850e-47 |
| Msa0228320 | Msa0822380 | 0.818038 | 2.414759e-52 | -8.615850e-47 |
| Msa0238580 | Msa0822380 | 0.836822 | 7.471378e-57 | -8.615850e-47 |
| Msa0369580 | Msa0822380 | 0.841169 | 5.591630e-58 | -8.615850e-47 |
| Msa0417000 | Msa0822380 | 0.868719 | 5.297174e-66 | -8.615850e-47 |
| Msa0424940 | Msa0822380 | 0.819219 | 1.303003e-52 | -8.615850e-47 |
| Msa0426680 | Msa0822380 | 0.803968 | 2.705759e-49 | -8.615850e-47 |
| Msa0463820 | Msa0822380 | 0.820148 | 7.992492e-53 | -8.615850e-47 |
| Msa0274530 | Msa0822380 | 0.834978 | 2.192611e-56 | -8.615850e-47 |
| Msa0276150 | Msa0822380 | 0.843267 | 1.556237e-58 | -8.615850e-47 |
| Msa0307490 | Msa0822380 | 0.825274 | 5.126951e-54 | -8.615850e-47 |
| Msa0313050 | Msa0822380 | -0.812083 | 5.067220e-51 | -8.615850e-47 |
| Msa0336550 | Msa0822380 | 0.803814 | 2.913026e-49 | -8.615850e-47 |
| Msa0516340 | Msa0822380 | 0.842583 | 2.366871e-58 | -8.615850e-47 |
| Msa0556690 | Msa0822380 | 0.814957 | 1.182100e-51 | -8.615850e-47 |
| Msa0574230 | Msa0822380 | 0.817339 | 3.470671e-52 | -8.615850e-47 |
| Msa0576510 | Msa0822380 | 0.816072 | 6.675616e-52 | -8.615850e-47 |
| Msa0577140 | Msa0822380 | 0.826266 | 2.980970e-54 | -8.615850e-47 |
| Msa0577920 | Msa0822380 | 0.819175 | 1.333046e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0822380 | MtrunA17_Chr5g0442671 | 95.876 | 388 | 16 | 0 | 1 | 388 | 1 | 388 | 0.0 | 776 |
| Msa0822380 | MtrunA17_Chr3g0095661 | 80.151 | 398 | 66 | 4 | 1 | 388 | 1 | 395 | 0.0 | 646 |
| Msa0822380 | MtrunA17_Chr5g0433601 | 75.444 | 338 | 79 | 2 | 45 | 381 | 95 | 429 | 0.0 | 534 |
| Msa0822380 | MtrunA17_Chr3g0121311 | 64.634 | 328 | 108 | 2 | 53 | 380 | 57 | 376 | 8.07e-156 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0822380 | AT5G17230.2 | 75.138 | 362 | 74 | 4 | 24 | 377 | 60 | 413 | 0.0 | 553 |
| Msa0822380 | AT5G17230.1 | 75.138 | 362 | 74 | 4 | 24 | 377 | 60 | 413 | 0.0 | 553 |
| Msa0822380 | AT5G17230.4 | 75.138 | 362 | 74 | 4 | 24 | 377 | 60 | 413 | 0.0 | 553 |
| Msa0822380 | AT5G17230.3 | 72.149 | 377 | 74 | 5 | 24 | 377 | 60 | 428 | 0.0 | 544 |
Find 90 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATAATAACTTCACAAAA+AGG | 0.232010 | 5_3:-60725165 | Msa0822380:CDS |
| AACAATTTGGTTAACTCTTT+AGG | 0.243453 | 5_3:+60725076 | None:intergenic |
| GCATCATCTCATAAACAATT+TGG | 0.245018 | 5_3:+60725063 | None:intergenic |
| CTTTATTGTTACTATGTTGC+TGG | 0.254005 | 5_3:-60726820 | Msa0822380:CDS |
| TCATGAAGGGACAAATAAAA+AGG | 0.256763 | 5_3:-60725309 | Msa0822380:CDS |
| CATAGACACATTATTAAAAT+AGG | 0.291933 | 5_3:+60725041 | None:intergenic |
| TCTGTAGAAGCCTTGGATTC+AGG | 0.303642 | 5_3:+60726757 | None:intergenic |
| TAAGTACCCTGTTGATATTC+AGG | 0.310562 | 5_3:-60727490 | Msa0822380:intron |
| AGATGTCTAGTATTGTTGTT+AGG | 0.314970 | 5_3:-60729279 | Msa0822380:CDS |
| AAGAACGCCGAAAAGCTATA+TGG | 0.335633 | 5_3:-60727810 | Msa0822380:CDS |
| TGTGAAGTTATTATAATCAT+TGG | 0.341584 | 5_3:+60725171 | None:intergenic |
| TTATCACTACCAGCTGCTTA+TGG | 0.342219 | 5_3:-60725115 | Msa0822380:CDS |
| TCAGGTGCTATTCCCATTAC+AGG | 0.342367 | 5_3:+60726775 | None:intergenic |
| TCCAACATCTCTGAGTATAT+TGG | 0.357053 | 5_3:+60726687 | None:intergenic |
| AAGAGAAAAGAGTGTAAGAA+TGG | 0.370228 | 5_3:-60729209 | Msa0822380:CDS |
| GTTCTTTGATGAAGCAGAAA+AGG | 0.373517 | 5_3:-60725278 | Msa0822380:CDS |
| TTGGTGGGTATTTCTAGAAT+TGG | 0.377918 | 5_3:-60729235 | Msa0822380:CDS |
| CTCTCCTCTGAACTTCTTGA+AGG | 0.380334 | 5_3:+60729142 | None:intergenic |
| AGAGTGTAAGAATGGGTTCT+AGG | 0.388815 | 5_3:-60729201 | Msa0822380:CDS |
| AAAGCTATATGGGCAATCTA+TGG | 0.391917 | 5_3:-60727799 | Msa0822380:intron |
| GGTGGTTCTCAATGATATAT+AGG | 0.393061 | 5_3:+60729422 | None:intergenic |
| GTGTGATGTGTGAAGCATTT+GGG | 0.394039 | 5_3:+60727607 | None:intergenic |
| CCATTCAAGGACATGATAGA+AGG | 0.398564 | 5_3:-60726895 | Msa0822380:CDS |
| GGGCAGCATTGTTGTTATAT+AGG | 0.404583 | 5_3:-60725216 | Msa0822380:CDS |
| TGAAGTACCTGAATATCAAC+AGG | 0.410981 | 5_3:+60727483 | None:intergenic |
| AGAGAGGGAGAAAATGAGTT+AGG | 0.411856 | 5_3:+60729352 | None:intergenic |
| GGTGTGATGTGTGAAGCATT+TGG | 0.411963 | 5_3:+60727606 | None:intergenic |
| ATGGGTTCTAGGATAAGGTT+TGG | 0.418446 | 5_3:-60729190 | Msa0822380:CDS |
| TAAGAATGGGTTCTAGGATA+AGG | 0.419173 | 5_3:-60729195 | Msa0822380:CDS |
| TCCCATCTGTCCAAGGCTGC+TGG | 0.419670 | 5_3:+60727585 | None:intergenic |
| CTTATGAGTGTTCCTGTAAT+GGG | 0.421342 | 5_3:-60726787 | Msa0822380:CDS |
| GCATAATGTCTTCATCTGAT+AGG | 0.425370 | 5_3:+60725362 | None:intergenic |
| TTTATTGTTACTATGTTGCT+GGG | 0.438390 | 5_3:-60726819 | Msa0822380:CDS |
| TAGGATAAGGTTTGGAAGTG+GGG | 0.438574 | 5_3:-60729182 | Msa0822380:CDS |
| AGCTCAGTTCTGCTAGTAGA+TGG | 0.444906 | 5_3:-60725246 | Msa0822380:CDS |
| GATGTCTAGTATTGTTGTTA+GGG | 0.445851 | 5_3:-60729278 | Msa0822380:CDS |
| CTAGGATAAGGTTTGGAAGT+GGG | 0.447585 | 5_3:-60729183 | Msa0822380:CDS |
| TCTTATGAGTGTTCCTGTAA+TGG | 0.447627 | 5_3:-60726788 | Msa0822380:CDS |
| CAGCAACATAGTAACAATAA+AGG | 0.448850 | 5_3:+60726821 | None:intergenic |
| CATCATTCATTATATGAAGT+AGG | 0.463124 | 5_3:-60724889 | Msa0822380:three_prime_UTR |
| GCAGCATCAAACATATCATA+TGG | 0.464921 | 5_3:+60727531 | None:intergenic |
| TTATTTGAAATAGCCATTCA+AGG | 0.465866 | 5_3:-60726908 | Msa0822380:intron |
| CCTTCTATCATGTCCTTGAA+TGG | 0.471429 | 5_3:+60726895 | None:intergenic |
| CACCAGCAGCCTTGGACAGA+TGG | 0.481447 | 5_3:-60727587 | Msa0822380:CDS |
| TTTGGTGAGAGAAGATAGGA+GGG | 0.481973 | 5_3:-60729089 | Msa0822380:CDS |
| AGAGAAAAGAGTGTAAGAAT+GGG | 0.484304 | 5_3:-60729208 | Msa0822380:CDS |
| AATGCTCTCTGTAGAAGCCT+TGG | 0.487506 | 5_3:+60726750 | None:intergenic |
| CAACAATACTAGACATCTCT+AGG | 0.489143 | 5_3:+60729284 | None:intergenic |
| TTCTTTGATGAAGCAGAAAA+GGG | 0.493216 | 5_3:-60725277 | Msa0822380:CDS |
| TGCTAGTAGATGGCCTGTGT+GGG | 0.498713 | 5_3:-60725236 | Msa0822380:CDS |
| AGAACGCCGAAAAGCTATAT+GGG | 0.501743 | 5_3:-60727809 | Msa0822380:CDS |
| ACACATCACACCAGCAGCCT+TGG | 0.504549 | 5_3:-60727595 | Msa0822380:CDS |
| TCTAGGATAAGGTTTGGAAG+TGG | 0.507067 | 5_3:-60729184 | Msa0822380:CDS |
| AGAACTGATGAACTAGTAGA+TGG | 0.508686 | 5_3:-60727630 | Msa0822380:CDS |
| GAGCATTTATAATGCTGCAT+TGG | 0.509388 | 5_3:-60726734 | Msa0822380:CDS |
| CATGATAGAAGGGATGAGGA+TGG | 0.512203 | 5_3:-60726884 | Msa0822380:CDS |
| TTCAAGAAGTTCAGAGGAGA+GGG | 0.515940 | 5_3:-60729140 | Msa0822380:CDS |
| TATAATGCTGCATTGGCACT+AGG | 0.516591 | 5_3:-60726727 | Msa0822380:CDS |
| TATTGAATTCTGCTTATGAT+CGG | 0.518807 | 5_3:-60729006 | Msa0822380:CDS |
| TACTATGTTGCTGGGACAGT+AGG | 0.527506 | 5_3:-60726811 | Msa0822380:CDS |
| ACCAATATACTCAGAGATGT+TGG | 0.528223 | 5_3:-60726688 | Msa0822380:CDS |
| CTTGTGCTAGCTCATCTTGA+GGG | 0.529549 | 5_3:+60725389 | None:intergenic |
| ACCAGCAGCCTTGGACAGAT+GGG | 0.533995 | 5_3:-60727586 | Msa0822380:CDS |
| CAGGTTTGGTGAGAGAAGAT+AGG | 0.541572 | 5_3:-60729093 | Msa0822380:CDS |
| GTTTGGTGAGAGAAGATAGG+AGG | 0.542876 | 5_3:-60729090 | Msa0822380:CDS |
| GTGGAAAAGTAACAGACAAA+TGG | 0.545459 | 5_3:-60725339 | Msa0822380:CDS |
| CAAGATGAGCTAGCACAAGC+TGG | 0.546911 | 5_3:-60725385 | Msa0822380:CDS |
| CATTCAAGGACATGATAGAA+GGG | 0.552755 | 5_3:-60726894 | Msa0822380:CDS |
| CTGCTAGTAGATGGCCTGTG+TGG | 0.559580 | 5_3:-60725237 | Msa0822380:CDS |
| GGGAATAGCACCTGAATCCA+AGG | 0.561665 | 5_3:-60726767 | Msa0822380:CDS |
| GAATTGTGATGCAAAATCAT+TGG | 0.562271 | 5_3:-60729254 | Msa0822380:CDS |
| CAAATGGAGAAATTTCATGA+AGG | 0.564295 | 5_3:-60725323 | Msa0822380:CDS |
| AGGACATGATAGAAGGGATG+AGG | 0.567252 | 5_3:-60726888 | Msa0822380:CDS |
| CCGTTGCTCCCATCTGTCCA+AGG | 0.572170 | 5_3:+60727578 | None:intergenic |
| GCTTGTGCTAGCTCATCTTG+AGG | 0.572873 | 5_3:+60725388 | None:intergenic |
| GATTATGATAGTGCTAGAAG+AGG | 0.580690 | 5_3:-60725424 | Msa0822380:intron |
| AAATGGAGAAATTTCATGAA+GGG | 0.583483 | 5_3:-60725322 | Msa0822380:CDS |
| AGGATAAGGTTTGGAAGTGG+GGG | 0.586634 | 5_3:-60729181 | Msa0822380:CDS |
| AGTGCAGTTCCATAAGCAGC+TGG | 0.587800 | 5_3:+60725106 | None:intergenic |
| CTTCAAGAAGTTCAGAGGAG+AGG | 0.613107 | 5_3:-60729141 | Msa0822380:CDS |
| AGAACCTTCAAGAAGTTCAG+AGG | 0.614687 | 5_3:-60729146 | Msa0822380:CDS |
| TACTAGGGAAGGAGTACCAA+AGG | 0.616836 | 5_3:+60724861 | None:intergenic |
| TTGTGATGCAAAATCATTGG+TGG | 0.618059 | 5_3:-60729251 | Msa0822380:CDS |
| CCTTGGACAGATGGGAGCAA+CGG | 0.633759 | 5_3:-60727578 | Msa0822380:CDS |
| AACAACAATGCTGCCCACAC+AGG | 0.638058 | 5_3:+60725223 | None:intergenic |
| TGTGATGCAAAATCATTGGT+GGG | 0.648026 | 5_3:-60729250 | Msa0822380:CDS |
| TCAGATGAAGACATTATGCG+TGG | 0.650440 | 5_3:-60725358 | Msa0822380:CDS |
| TTGGTGAGAGAAGATAGGAG+GGG | 0.683654 | 5_3:-60729088 | Msa0822380:CDS |
| AATTCTGCTTATGATCGGTG+TGG | 0.729934 | 5_3:-60729001 | Msa0822380:CDS |
| GAAGTACCTGAATATCAACA+GGG | 0.777322 | 5_3:+60727484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTTTTTTCTTTTTTTT+TGG | - | chr5_3:60725471-60725490 | Msa0822380:intron | 10.0% |
| !!! | GAATGTTATTTTTATTTTTT+TGG | + | chr5_3:60726660-60726679 | None:intergenic | 10.0% |
| !!! | ATTTCTCTTTTTATTTAATA+CGG | - | chr5_3:60727921-60727940 | Msa0822380:intron | 10.0% |
| !! | ATAACAATAGTTAAATAAAA+AGG | - | chr5_3:60728099-60728118 | Msa0822380:intron | 10.0% |
| !! | GGATTTAATTATAAAAAAAA+AGG | + | chr5_3:60728735-60728754 | None:intergenic | 10.0% |
| !! | GATTAAATTCAATTGAATAT+TGG | + | chr5_3:60725540-60725559 | None:intergenic | 15.0% |
| !!! | TTATTTTACACTTAATTGAA+TGG | - | chr5_3:60725750-60725769 | Msa0822380:intron | 15.0% |
| !!! | GAAAAAATAAACATTTTCAA+TGG | + | chr5_3:60726060-60726079 | None:intergenic | 15.0% |
| !!! | TGAAAATGTTTATTTTTTCA+TGG | - | chr5_3:60726061-60726080 | Msa0822380:intron | 15.0% |
| !!! | AAATATTTTGTTGTGTTTAA+TGG | + | chr5_3:60726238-60726257 | None:intergenic | 15.0% |
| !!! | AAGTGAATTTTTTTAGTTTT+TGG | + | chr5_3:60727111-60727130 | None:intergenic | 15.0% |
| !!! | TTGAAATAGTATATAGTTTT+TGG | + | chr5_3:60727763-60727782 | None:intergenic | 15.0% |
| !!! | TTTCTCTTTTTATTTAATAC+GGG | - | chr5_3:60727922-60727941 | Msa0822380:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | chr5_3:60728660-60728679 | None:intergenic | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | chr5_3:60728659-60728678 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr5_3:60728568-60728587 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr5_3:60728467-60728486 | Msa0822380:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | chr5_3:60728659-60728678 | Msa0822380:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | chr5_3:60728660-60728679 | Msa0822380:intron | 15.0% |
| !! | ATTATAATAACTTCACAAAA+AGG | - | chr5_3:60729217-60729236 | Msa0822380:CDS | 15.0% |
| !! | TTATAATAACTTCACAAAAA+GGG | - | chr5_3:60729218-60729237 | Msa0822380:CDS | 15.0% |
| !! | AGAAAAAAAAAGTGATTGTA+AGG | + | chr5_3:60724937-60724956 | None:intergenic | 20.0% |
| !!! | TTGCACTTTTTTTTTAATCT+CGG | + | chr5_3:60724984-60725003 | None:intergenic | 20.0% |
| !! | TAGAAAATAAAACTTCTATC+TGG | + | chr5_3:60726183-60726202 | None:intergenic | 20.0% |
| !!! | GAAGTTATTTCAATTAAGTT+AGG | - | chr5_3:60726332-60726351 | Msa0822380:intron | 20.0% |
| !! | CATCAAAATACATTATTGAA+GGG | + | chr5_3:60726395-60726414 | None:intergenic | 20.0% |
| !! | ACATCAAAATACATTATTGA+AGG | + | chr5_3:60726396-60726415 | None:intergenic | 20.0% |
| !!! | CAATAATGTATTTTGATGTT+AGG | - | chr5_3:60726397-60726416 | Msa0822380:intron | 20.0% |
| !!! | GTATTTTGGAGTATATTTTT+TGG | - | chr5_3:60726450-60726469 | Msa0822380:intron | 20.0% |
| !!! | TATATTTTTTGGATGGATTT+GGG | - | chr5_3:60726461-60726480 | Msa0822380:intron | 20.0% |
| !! | ATCTTTCAATTGTACAATTT+AGG | - | chr5_3:60726532-60726551 | Msa0822380:intron | 20.0% |
| !!! | TTGATGATGATATCATAATT+TGG | + | chr5_3:60726637-60726656 | None:intergenic | 20.0% |
| !!! | CTATTAAGTCCTTTTTTTTT+TGG | - | chr5_3:60726686-60726705 | Msa0822380:CDS | 20.0% |
| !! | AATTCCAAACCAAAAAAAAA+AGG | + | chr5_3:60726698-60726717 | None:intergenic | 20.0% |
| !!! | AAGGTTGAGATTTAAATTTT+AGG | + | chr5_3:60726934-60726953 | None:intergenic | 20.0% |
| !! | TATATGAAACATGTAATGTA+AGG | + | chr5_3:60726953-60726972 | None:intergenic | 20.0% |
| !! | GATAATGCATAATATATGAA+AGG | - | chr5_3:60727060-60727079 | Msa0822380:intron | 20.0% |
| !!! | TGAATTTTTTTAGTTTTTGG+TGG | + | chr5_3:60727108-60727127 | None:intergenic | 20.0% |
| !! | TAAAAAAAAACAATTGTGTG+TGG | + | chr5_3:60727197-60727216 | None:intergenic | 20.0% |
| !!! | ACACACAATTGTTTTTTTTT+AGG | - | chr5_3:60727196-60727215 | Msa0822380:intron | 20.0% |
| !! | AAAATTGATCTTATTGACAT+TGG | - | chr5_3:60727446-60727465 | Msa0822380:intron | 20.0% |
| !! | TTGAAATTAAATTCCTTTCT+TGG | - | chr5_3:60727976-60727995 | Msa0822380:intron | 20.0% |
| !! | TGAAATTAAATTCCTTTCTT+GGG | - | chr5_3:60727977-60727996 | Msa0822380:intron | 20.0% |
| !! | GAAAGAAATTAAATAAGTCT+TGG | - | chr5_3:60728155-60728174 | Msa0822380:intron | 20.0% |
| !!! | AATTTTGCAACAATTTTTTG+CGG | - | chr5_3:60728502-60728521 | Msa0822380:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr5_3:60728597-60728616 | Msa0822380:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr5_3:60728598-60728617 | Msa0822380:intron | 20.0% |
| !!! | ATAATGTATTGACAAATTCA+TGG | + | chr5_3:60728756-60728775 | None:intergenic | 20.0% |
| !! | TGTGAAGTTATTATAATCAT+TGG | + | chr5_3:60729214-60729233 | None:intergenic | 20.0% |
| !! | CATAGACACATTATTAAAAT+AGG | + | chr5_3:60729344-60729363 | None:intergenic | 20.0% |
| !!! | TGAAATGAAGAGTTTTTTAG+TGG | + | chr5_3:60725068-60725087 | None:intergenic | 25.0% |
| !!! | GATTTTGAGAAAACAATTGA+AGG | - | chr5_3:60725333-60725352 | Msa0822380:CDS | 25.0% |
| ! | TATTGAATTCTGCTTATGAT+CGG | - | chr5_3:60725376-60725395 | Msa0822380:CDS | 25.0% |
| ! | AGAAAGAAAGAAAAATACCT+AGG | + | chr5_3:60725440-60725459 | None:intergenic | 25.0% |
| ! | ATTGGAAATTCTGAATATTG+TGG | + | chr5_3:60725522-60725541 | None:intergenic | 25.0% |
| !! | CATTTTTCGTAAGTTTCATT+GGG | - | chr5_3:60725560-60725579 | Msa0822380:intron | 25.0% |
| !! | ATTTTTCGTAAGTTTCATTG+GGG | - | chr5_3:60725561-60725580 | Msa0822380:intron | 25.0% |
| ! | TATAATGCATTAGATAACAG+AGG | - | chr5_3:60726106-60726125 | Msa0822380:intron | 25.0% |
| ! | ATAATGCATTAGATAACAGA+GGG | - | chr5_3:60726107-60726126 | Msa0822380:intron | 25.0% |
| !!! | ATGGAGGAAATTTTAAGTAT+TGG | + | chr5_3:60726219-60726238 | None:intergenic | 25.0% |
| !!! | TATTTTGTTGTGTTTAATGG+AGG | + | chr5_3:60726235-60726254 | None:intergenic | 25.0% |
| !!! | TTTGGAGTATATTTTTTGGA+TGG | - | chr5_3:60726454-60726473 | Msa0822380:intron | 25.0% |
| !!! | GTATATTTTTTGGATGGATT+TGG | - | chr5_3:60726460-60726479 | Msa0822380:intron | 25.0% |
| !!! | AAGTCCTTTTTTTTTTGGTT+TGG | - | chr5_3:60726691-60726710 | Msa0822380:CDS | 25.0% |
| !!! | ATTTTTTTAGTTTTTGGTGG+TGG | + | chr5_3:60727105-60727124 | None:intergenic | 25.0% |
| ! | ACAATTAAGTGTGTGAATTT+CGG | + | chr5_3:60727260-60727279 | None:intergenic | 25.0% |
| !! | TTATTTGAAATAGCCATTCA+AGG | - | chr5_3:60727474-60727493 | Msa0822380:intron | 25.0% |
| ! | TTTATTGTTACTATGTTGCT+GGG | - | chr5_3:60727563-60727582 | Msa0822380:CDS | 25.0% |
| ! | GAAATTAAATTCCTTTCTTG+GGG | - | chr5_3:60727978-60727997 | Msa0822380:intron | 25.0% |
| ! | TCTTAATACCTTCTAACTAA+AGG | - | chr5_3:60728037-60728056 | Msa0822380:intron | 25.0% |
| ! | CTTAATACCTTCTAACTAAA+GGG | - | chr5_3:60728038-60728057 | Msa0822380:intron | 25.0% |
| !!! | AGTCTTGGAACATTTTTTTT+TGG | - | chr5_3:60728170-60728189 | Msa0822380:intron | 25.0% |
| !!! | GTCTTGGAACATTTTTTTTT+GGG | - | chr5_3:60728171-60728190 | Msa0822380:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | + | chr5_3:60728307-60728326 | None:intergenic | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | + | chr5_3:60728308-60728327 | None:intergenic | 25.0% |
| ! | AGTGCAGAAAAACAAAATTA+GGG | - | chr5_3:60728631-60728650 | Msa0822380:intron | 25.0% |
| !! | TTTTCCCAATGACTTTAATT+AGG | - | chr5_3:60728778-60728797 | Msa0822380:intron | 25.0% |
| ! | TGAACCTAATTAAAGTCATT+GGG | + | chr5_3:60728785-60728804 | None:intergenic | 25.0% |
| ! | ATGAACCTAATTAAAGTCAT+TGG | + | chr5_3:60728786-60728805 | None:intergenic | 25.0% |
| ! | AAATGGAGAAATTTCATGAA+GGG | - | chr5_3:60729060-60729079 | Msa0822380:CDS | 25.0% |
| ! | AACAATTTGGTTAACTCTTT+AGG | + | chr5_3:60729309-60729328 | None:intergenic | 25.0% |
| ! | CATCATTCATTATATGAAGT+AGG | - | chr5_3:60729493-60729512 | Msa0822380:five_prime_UTR | 25.0% |
| !!! | CACTTTTTTTTTAATCTCGG+TGG | + | chr5_3:60724981-60725000 | None:intergenic | 30.0% |
| TGGACACTATAAAAAAGAGA+GGG | + | chr5_3:60725048-60725067 | None:intergenic | 30.0% | |
| ! | AGATGTCTAGTATTGTTGTT+AGG | - | chr5_3:60725103-60725122 | Msa0822380:CDS | 30.0% |
| ! | GATGTCTAGTATTGTTGTTA+GGG | - | chr5_3:60725104-60725123 | Msa0822380:CDS | 30.0% |
| GAATTGTGATGCAAAATCAT+TGG | - | chr5_3:60725128-60725147 | Msa0822380:CDS | 30.0% | |
| ! | AAGAGAAAAGAGTGTAAGAA+TGG | - | chr5_3:60725173-60725192 | Msa0822380:CDS | 30.0% |
| ! | AGAGAAAAGAGTGTAAGAAT+GGG | - | chr5_3:60725174-60725193 | Msa0822380:CDS | 30.0% |
| !! | ATTGAAGGTGATTTTAGCAA+TGG | - | chr5_3:60725348-60725367 | Msa0822380:CDS | 30.0% |
| AATACCTAGGTAAAAAGTCT+TGG | + | chr5_3:60725427-60725446 | None:intergenic | 30.0% | |
| CCAATGAAACTTACGAAAAA+TGG | + | chr5_3:60725562-60725581 | None:intergenic | 30.0% | |
| !! | CCATTTTTCGTAAGTTTCAT+TGG | - | chr5_3:60725559-60725578 | Msa0822380:intron | 30.0% |
| ! | TTTTTCGTAAGTTTCATTGG+GGG | - | chr5_3:60725562-60725581 | Msa0822380:intron | 30.0% |
| TCTTCATTCTTGAATATGTG+TGG | + | chr5_3:60725599-60725618 | None:intergenic | 30.0% | |
| ACTGAGTCTATGAAAGTTAT+TGG | - | chr5_3:60725793-60725812 | Msa0822380:intron | 30.0% | |
| CTGAGTCTATGAAAGTTATT+GGG | - | chr5_3:60725794-60725813 | Msa0822380:intron | 30.0% | |
| AATGAGTCAATGGAAGTTAA+AGG | - | chr5_3:60725819-60725838 | Msa0822380:intron | 30.0% | |
| TTTCATGGAGTTATTATGAG+AGG | - | chr5_3:60726076-60726095 | Msa0822380:intron | 30.0% | |
| GTTAGGAAAGCAATTAAGTT+AGG | - | chr5_3:60726349-60726368 | Msa0822380:intron | 30.0% | |
| ATTGAAGGGTCTATATCAAT+TGG | + | chr5_3:60726381-60726400 | None:intergenic | 30.0% | |
| ! | TGGTTAGATCGTTAGTATTT+TGG | - | chr5_3:60726436-60726455 | Msa0822380:intron | 30.0% |
| CATAATATATGAAAGGTCTG+AGG | - | chr5_3:60727067-60727086 | Msa0822380:intron | 30.0% | |
| !! | AACGTCAAAGTTGATTTTAG+AGG | - | chr5_3:60727136-60727155 | Msa0822380:intron | 30.0% |
| ATTAATTTCACCCACGAAAA+AGG | - | chr5_3:60727165-60727184 | Msa0822380:intron | 30.0% | |
| ! | TTTGTTATATGTAGACGAAG+TGG | - | chr5_3:60727225-60727244 | Msa0822380:intron | 30.0% |
| CAATATCGATAATGTTAGGT+TGG | + | chr5_3:60727315-60727334 | None:intergenic | 30.0% | |
| CAGACAATATCGATAATGTT+AGG | + | chr5_3:60727319-60727338 | None:intergenic | 30.0% | |
| CAGCAACATAGTAACAATAA+AGG | + | chr5_3:60727564-60727583 | None:intergenic | 30.0% | |
| CTTTATTGTTACTATGTTGC+TGG | - | chr5_3:60727562-60727581 | Msa0822380:CDS | 30.0% | |
| !! | TCAAAGATTAGTCTCATAGT+GGG | + | chr5_3:60727883-60727902 | None:intergenic | 30.0% |
| TATGAGACTAATCTTTGAGT+CGG | - | chr5_3:60727885-60727904 | Msa0822380:intron | 30.0% | |
| TAAGAAACCAACATGATGTT+CGG | + | chr5_3:60728022-60728041 | None:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr5_3:60728691-60728710 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr5_3:60728690-60728709 | None:intergenic | 30.0% |
| CAAGATTAGAACACTATGAA+AGG | - | chr5_3:60728370-60728389 | Msa0822380:intron | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | - | chr5_3:60728630-60728649 | Msa0822380:intron | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr5_3:60728690-60728709 | Msa0822380:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr5_3:60728691-60728710 | Msa0822380:intron | 30.0% |
| CAAATGGAGAAATTTCATGA+AGG | - | chr5_3:60729059-60729078 | Msa0822380:CDS | 30.0% | |
| TCATGAAGGGACAAATAAAA+AGG | - | chr5_3:60729073-60729092 | Msa0822380:CDS | 30.0% | |
| CATGAAGGGACAAATAAAAA+GGG | - | chr5_3:60729074-60729093 | Msa0822380:CDS | 30.0% | |
| TTCTTTGATGAAGCAGAAAA+GGG | - | chr5_3:60729105-60729124 | Msa0822380:CDS | 30.0% | |
| GCATCATCTCATAAACAATT+TGG | + | chr5_3:60729322-60729341 | None:intergenic | 30.0% | |
| ! | TATGAAGTAGGTTTTTCCTT+TGG | - | chr5_3:60729505-60729524 | Msa0822380:five_prime_UTR | 30.0% |
| GGTGGTTCTCAATGATATAT+AGG | + | chr5_3:60724963-60724982 | None:intergenic | 35.0% | |
| GTGGACACTATAAAAAAGAG+AGG | + | chr5_3:60725049-60725068 | None:intergenic | 35.0% | |
| CAACAATACTAGACATCTCT+AGG | + | chr5_3:60725101-60725120 | None:intergenic | 35.0% | |
| TTGTGATGCAAAATCATTGG+TGG | - | chr5_3:60725131-60725150 | Msa0822380:CDS | 35.0% | |
| TGTGATGCAAAATCATTGGT+GGG | - | chr5_3:60725132-60725151 | Msa0822380:CDS | 35.0% | |
| !! | TTGGTGGGTATTTCTAGAAT+TGG | - | chr5_3:60725147-60725166 | Msa0822380:CDS | 35.0% |
| !! | TAAGAATGGGTTCTAGGATA+AGG | - | chr5_3:60725187-60725206 | Msa0822380:CDS | 35.0% |
| ! | TATGCCAAGACTTTTTACCT+AGG | - | chr5_3:60725420-60725439 | Msa0822380:intron | 35.0% |
| TTATTGGGAGAATGAGTCAA+TGG | - | chr5_3:60725809-60725828 | Msa0822380:intron | 35.0% | |
| !! | GAGTTGATAGAAAACGATGA+TGG | + | chr5_3:60726155-60726174 | None:intergenic | 35.0% |
| ATGTTAGGCAAGCAATTAAG+TGG | - | chr5_3:60726412-60726431 | Msa0822380:intron | 35.0% | |
| ! | AGATTGCCCATATAGCTTTT+CGG | + | chr5_3:60726582-60726601 | None:intergenic | 35.0% |
| AAAGCTATATGGGCAATCTA+TGG | - | chr5_3:60726583-60726602 | Msa0822380:intron | 35.0% | |
| TTTCATTGTGCATTGCAGTA+TGG | - | chr5_3:60726723-60726742 | Msa0822380:CDS | 35.0% | |
| AGAACTGATGAACTAGTAGA+TGG | - | chr5_3:60726752-60726771 | Msa0822380:CDS | 35.0% | |
| GCAGCATCAAACATATCATA+TGG | + | chr5_3:60726854-60726873 | None:intergenic | 35.0% | |
| TAAGTACCCTGTTGATATTC+AGG | - | chr5_3:60726892-60726911 | Msa0822380:CDS | 35.0% | |
| ! | GAAGTACCTGAATATCAACA+GGG | + | chr5_3:60726901-60726920 | None:intergenic | 35.0% |
| ! | TGAAGTACCTGAATATCAAC+AGG | + | chr5_3:60726902-60726921 | None:intergenic | 35.0% |
| ACTAAGCATACACTTAGTTG+TGG | + | chr5_3:60727004-60727023 | None:intergenic | 35.0% | |
| ATTAAGTGTGTGAATTTCGG+CGG | + | chr5_3:60727257-60727276 | None:intergenic | 35.0% | |
| CACACTTAATTGTGAGATTC+CGG | - | chr5_3:60727267-60727286 | Msa0822380:intron | 35.0% | |
| TCGATATTGTCTGTTGAGTT+AGG | - | chr5_3:60727326-60727345 | Msa0822380:intron | 35.0% | |
| CATTCAAGGACATGATAGAA+GGG | - | chr5_3:60727488-60727507 | Msa0822380:intron | 35.0% | |
| TCTTATGAGTGTTCCTGTAA+TGG | - | chr5_3:60727594-60727613 | Msa0822380:CDS | 35.0% | |
| CTTATGAGTGTTCCTGTAAT+GGG | - | chr5_3:60727595-60727614 | Msa0822380:CDS | 35.0% | |
| GAGCATTTATAATGCTGCAT+TGG | - | chr5_3:60727648-60727667 | Msa0822380:intron | 35.0% | |
| ACCAATATACTCAGAGATGT+TGG | - | chr5_3:60727694-60727713 | Msa0822380:intron | 35.0% | |
| TCCAACATCTCTGAGTATAT+TGG | + | chr5_3:60727698-60727717 | None:intergenic | 35.0% | |
| !! | CTCAAAGATTAGTCTCATAG+TGG | + | chr5_3:60727884-60727903 | None:intergenic | 35.0% |
| AAGAAACCAACATGATGTTC+GGG | + | chr5_3:60728021-60728040 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | chr5_3:60728675-60728694 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | chr5_3:60728675-60728694 | Msa0822380:intron | 35.0% | |
| ! | GATTATGATAGTGCTAGAAG+AGG | - | chr5_3:60728958-60728977 | Msa0822380:intron | 35.0% |
| GCATAATGTCTTCATCTGAT+AGG | + | chr5_3:60729023-60729042 | None:intergenic | 35.0% | |
| GTGGAAAAGTAACAGACAAA+TGG | - | chr5_3:60729043-60729062 | Msa0822380:CDS | 35.0% | |
| GTTCTTTGATGAAGCAGAAA+AGG | - | chr5_3:60729104-60729123 | Msa0822380:CDS | 35.0% | |
| TTCACAAAAAGGGCTTATGT+TGG | - | chr5_3:60729228-60729247 | Msa0822380:CDS | 35.0% | |
| AGAGAGGGAGAAAATGAGTT+AGG | + | chr5_3:60725033-60725052 | None:intergenic | 40.0% | |
| ! | AGAGTGTAAGAATGGGTTCT+AGG | - | chr5_3:60725181-60725200 | Msa0822380:CDS | 40.0% |
| !! | ATGGGTTCTAGGATAAGGTT+TGG | - | chr5_3:60725192-60725211 | Msa0822380:CDS | 40.0% |
| ! | TCTAGGATAAGGTTTGGAAG+TGG | - | chr5_3:60725198-60725217 | Msa0822380:CDS | 40.0% |
| CTAGGATAAGGTTTGGAAGT+GGG | - | chr5_3:60725199-60725218 | Msa0822380:CDS | 40.0% | |
| TAGGATAAGGTTTGGAAGTG+GGG | - | chr5_3:60725200-60725219 | Msa0822380:CDS | 40.0% | |
| AGAACCTTCAAGAAGTTCAG+AGG | - | chr5_3:60725236-60725255 | Msa0822380:CDS | 40.0% | |
| TTCAAGAAGTTCAGAGGAGA+GGG | - | chr5_3:60725242-60725261 | Msa0822380:CDS | 40.0% | |
| !!! | GAAGTAGTTTTGAAGCAAGC+AGG | - | chr5_3:60725270-60725289 | Msa0822380:CDS | 40.0% |
| !!! | AGTTTTGAAGCAAGCAGGTT+TGG | - | chr5_3:60725275-60725294 | Msa0822380:CDS | 40.0% |
| TTTGGTGAGAGAAGATAGGA+GGG | - | chr5_3:60725293-60725312 | Msa0822380:CDS | 40.0% | |
| AATTCTGCTTATGATCGGTG+TGG | - | chr5_3:60725381-60725400 | Msa0822380:CDS | 40.0% | |
| TAGGCAAGCAATTAAGTGGT+TGG | - | chr5_3:60726416-60726435 | Msa0822380:intron | 40.0% | |
| AAGAACGCCGAAAAGCTATA+TGG | - | chr5_3:60726572-60726591 | Msa0822380:intron | 40.0% | |
| AGAACGCCGAAAAGCTATAT+GGG | - | chr5_3:60726573-60726592 | Msa0822380:intron | 40.0% | |
| ! | GTGTGATGTGTGAAGCATTT+GGG | + | chr5_3:60726778-60726797 | None:intergenic | 40.0% |
| !!! | TTTTAGTTTTTGGTGGTGGC+CGG | + | chr5_3:60727101-60727120 | None:intergenic | 40.0% |
| ! | TGAGATTCCGGATTTGAGTT+CGG | - | chr5_3:60727279-60727298 | Msa0822380:intron | 40.0% |
| CCTTCTATCATGTCCTTGAA+TGG | + | chr5_3:60727490-60727509 | None:intergenic | 40.0% | |
| CCATTCAAGGACATGATAGA+AGG | - | chr5_3:60727487-60727506 | Msa0822380:intron | 40.0% | |
| ! | TATAATGCTGCATTGGCACT+AGG | - | chr5_3:60727655-60727674 | Msa0822380:intron | 40.0% |
| TTTCTAACCCACCGAAACTA+GGG | - | chr5_3:60727804-60727823 | Msa0822380:CDS | 40.0% | |
| TATAAGACCCTAGTTTCGGT+GGG | + | chr5_3:60727814-60727833 | None:intergenic | 40.0% | |
| TGAGTTGTCCGCATAGATTA+AGG | + | chr5_3:60727849-60727868 | None:intergenic | 40.0% | |
| ATTCCTGAAGTTCATCAGAG+AGG | + | chr5_3:60727957-60727976 | None:intergenic | 40.0% | |
| AGAAACCAACATGATGTTCG+GGG | + | chr5_3:60728020-60728039 | None:intergenic | 40.0% | |
| ! | AAGGTTTTCATTCTCGCGAT+CGG | - | chr5_3:60728118-60728137 | Msa0822380:intron | 40.0% |
| TCAGATGAAGACATTATGCG+TGG | - | chr5_3:60729024-60729043 | Msa0822380:CDS | 40.0% | |
| ! | GGGCAGCATTGTTGTTATAT+AGG | - | chr5_3:60729166-60729185 | Msa0822380:CDS | 40.0% |
| TTATCACTACCAGCTGCTTA+TGG | - | chr5_3:60729267-60729286 | Msa0822380:CDS | 40.0% | |
| ! | GCTTATGGAACTGCACTTTT+AGG | - | chr5_3:60729282-60729301 | Msa0822380:exon | 40.0% |
| AGGATAAGGTTTGGAAGTGG+GGG | - | chr5_3:60725201-60725220 | Msa0822380:CDS | 45.0% | |
| CTCTCCTCTGAACTTCTTGA+AGG | + | chr5_3:60725243-60725262 | None:intergenic | 45.0% | |
| CTTCAAGAAGTTCAGAGGAG+AGG | - | chr5_3:60725241-60725260 | Msa0822380:CDS | 45.0% | |
| !! | CAGGTTTGGTGAGAGAAGAT+AGG | - | chr5_3:60725289-60725308 | Msa0822380:CDS | 45.0% |
| ! | GTTTGGTGAGAGAAGATAGG+AGG | - | chr5_3:60725292-60725311 | Msa0822380:CDS | 45.0% |
| TTGGTGAGAGAAGATAGGAG+GGG | - | chr5_3:60725294-60725313 | Msa0822380:CDS | 45.0% | |
| ATCACTTAGACCATCCCCAA+TGG | - | chr5_3:60726018-60726037 | Msa0822380:intron | 45.0% | |
| ACACTAAGACCTCACCATTG+GGG | + | chr5_3:60726035-60726054 | None:intergenic | 45.0% | |
| GACACTAAGACCTCACCATT+GGG | + | chr5_3:60726036-60726055 | None:intergenic | 45.0% | |
| AGACACTAAGACCTCACCAT+TGG | + | chr5_3:60726037-60726056 | None:intergenic | 45.0% | |
| ! | GGTGTGATGTGTGAAGCATT+TGG | + | chr5_3:60726779-60726798 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | - | chr5_3:60727038-60727057 | Msa0822380:intron | 45.0% |
| !! | GTGGTCTTCTCCTTTTTCGT+GGG | + | chr5_3:60727178-60727197 | None:intergenic | 45.0% |
| !! | TGTGGTCTTCTCCTTTTTCG+TGG | + | chr5_3:60727179-60727198 | None:intergenic | 45.0% |
| CTTTCGTCCGAACTCAAATC+CGG | + | chr5_3:60727289-60727308 | None:intergenic | 45.0% | |
| GTCTGTTGAGTTAGGCCTTA+CGG | - | chr5_3:60727334-60727353 | Msa0822380:intron | 45.0% | |
| AGACAATCGTGTAGTCCGTA+AGG | + | chr5_3:60727352-60727371 | None:intergenic | 45.0% | |
| AGGACATGATAGAAGGGATG+AGG | - | chr5_3:60727494-60727513 | Msa0822380:CDS | 45.0% | |
| CATGATAGAAGGGATGAGGA+TGG | - | chr5_3:60727498-60727517 | Msa0822380:CDS | 45.0% | |
| TACTATGTTGCTGGGACAGT+AGG | - | chr5_3:60727571-60727590 | Msa0822380:CDS | 45.0% | |
| !! | TCAGGTGCTATTCCCATTAC+AGG | + | chr5_3:60727610-60727629 | None:intergenic | 45.0% |
| TCTGTAGAAGCCTTGGATTC+AGG | + | chr5_3:60727628-60727647 | None:intergenic | 45.0% | |
| AATGCTCTCTGTAGAAGCCT+TGG | + | chr5_3:60727635-60727654 | None:intergenic | 45.0% | |
| CTTTCTAACCCACCGAAACT+AGG | - | chr5_3:60727803-60727822 | Msa0822380:CDS | 45.0% | |
| GTATAAGACCCTAGTTTCGG+TGG | + | chr5_3:60727815-60727834 | None:intergenic | 45.0% | |
| GCGGTATAAGACCCTAGTTT+CGG | + | chr5_3:60727818-60727837 | None:intergenic | 45.0% | |
| ! | ATAGATTAAGGCGCCTATGG+CGG | + | chr5_3:60727837-60727856 | None:intergenic | 45.0% |
| CATAGGCGCCTTAATCTATG+CGG | - | chr5_3:60727838-60727857 | Msa0822380:intron | 45.0% | |
| CTACCTCTCTGATGAACTTC+AGG | - | chr5_3:60727951-60727970 | Msa0822380:intron | 45.0% | |
| GTAACACTCTTCCCCAAGAA+AGG | + | chr5_3:60727992-60728011 | None:intergenic | 45.0% | |
| CGAGAAGCCCTTTAGTTAGA+AGG | + | chr5_3:60728048-60728067 | None:intergenic | 45.0% | |
| CTTGTGCTAGCTCATCTTGA+GGG | + | chr5_3:60728996-60729015 | None:intergenic | 45.0% | |
| AGCTCAGTTCTGCTAGTAGA+TGG | - | chr5_3:60729136-60729155 | Msa0822380:CDS | 45.0% | |
| !!! | AAATTTTACTTATTATTTAT+TGG | - | chr5_3:60725923-60725942 | Msa0822380:intron | 5.0% |
| !! | ATTAAATATATATTAGTAAT+TGG | + | chr5_3:60726272-60726291 | None:intergenic | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | + | chr5_3:60728274-60728293 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | + | chr5_3:60728275-60728294 | None:intergenic | 5.0% |
| !! | GATTTAATTATAAAAAAAAA+GGG | + | chr5_3:60728734-60728753 | None:intergenic | 5.0% |
| TTAGACCATCCCCAATGGTG+AGG | - | chr5_3:60726023-60726042 | Msa0822380:intron | 50.0% | |
| TAAGACCTCACCATTGGGGA+TGG | + | chr5_3:60726031-60726050 | None:intergenic | 50.0% | |
| TCTCGTGAGCTTAGCTCAGT+TGG | - | chr5_3:60727033-60727052 | Msa0822380:intron | 50.0% | |
| ! | AAGGTCTGAGGTTCAAACGC+CGG | - | chr5_3:60727079-60727098 | Msa0822380:intron | 50.0% |
| GGGAATAGCACCTGAATCCA+AGG | - | chr5_3:60727615-60727634 | Msa0822380:CDS | 50.0% | |
| ! | CTAGGGTCTTATACCGCCAT+AGG | - | chr5_3:60727821-60727840 | Msa0822380:CDS | 50.0% |
| ! | CGCATAGATTAAGGCGCCTA+TGG | + | chr5_3:60727840-60727859 | None:intergenic | 50.0% |
| CAACATGATGTTCGGGGAGT+TGG | + | chr5_3:60728014-60728033 | None:intergenic | 50.0% | |
| CAACTCCCCGAACATCATGT+TGG | - | chr5_3:60728012-60728031 | Msa0822380:intron | 50.0% | |
| GCTTGTGCTAGCTCATCTTG+AGG | + | chr5_3:60728997-60729016 | None:intergenic | 50.0% | |
| CAAGATGAGCTAGCACAAGC+TGG | - | chr5_3:60728997-60729016 | Msa0822380:CDS | 50.0% | |
| TGCTAGTAGATGGCCTGTGT+GGG | - | chr5_3:60729146-60729165 | Msa0822380:CDS | 50.0% | |
| AACAACAATGCTGCCCACAC+AGG | + | chr5_3:60729162-60729181 | None:intergenic | 50.0% | |
| AGTGCAGTTCCATAAGCAGC+TGG | + | chr5_3:60729279-60729298 | None:intergenic | 50.0% | |
| ACACATCACACCAGCAGCCT+TGG | - | chr5_3:60726787-60726806 | Msa0822380:CDS | 55.0% | |
| ACCAGCAGCCTTGGACAGAT+GGG | - | chr5_3:60726796-60726815 | Msa0822380:CDS | 55.0% | |
| CCTTGGACAGATGGGAGCAA+CGG | - | chr5_3:60726804-60726823 | Msa0822380:CDS | 55.0% | |
| CTGCTAGTAGATGGCCTGTG+TGG | - | chr5_3:60729145-60729164 | Msa0822380:CDS | 55.0% | |
| ! | GTTTGGAAGTGGGGGTGCAG+TGG | - | chr5_3:60725209-60725228 | Msa0822380:CDS | 60.0% |
| CACCAGCAGCCTTGGACAGA+TGG | - | chr5_3:60726795-60726814 | Msa0822380:CDS | 60.0% | |
| TCCCATCTGTCCAAGGCTGC+TGG | + | chr5_3:60726800-60726819 | None:intergenic | 60.0% | |
| CCGTTGCTCCCATCTGTCCA+AGG | + | chr5_3:60726807-60726826 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 60724875 | 60729529 | 60724875 | ID=Msa0822380;Name=Msa0822380 |
| chr5_3 | mRNA | 60724875 | 60729529 | 60724875 | ID=Msa0822380-mRNA-1;Parent=Msa0822380;Name=Msa0822380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=230|1|1|1|1|1|5|191|388 |
| chr5_3 | exon | 60724875 | 60725435 | 60724875 | ID=Msa0822380-mRNA-1:exon:18674;Parent=Msa0822380-mRNA-1 |
| chr5_3 | exon | 60726682 | 60726917 | 60726682 | ID=Msa0822380-mRNA-1:exon:18673;Parent=Msa0822380-mRNA-1 |
| chr5_3 | exon | 60727491 | 60727663 | 60727491 | ID=Msa0822380-mRNA-1:exon:18672;Parent=Msa0822380-mRNA-1 |
| chr5_3 | exon | 60727800 | 60727850 | 60727800 | ID=Msa0822380-mRNA-1:exon:18671;Parent=Msa0822380-mRNA-1 |
| chr5_3 | exon | 60728963 | 60729529 | 60728963 | ID=Msa0822380-mRNA-1:exon:18670;Parent=Msa0822380-mRNA-1 |
| chr5_3 | five_prime_UTR | 60729300 | 60729529 | 60729300 | ID=Msa0822380-mRNA-1:five_prime_utr;Parent=Msa0822380-mRNA-1 |
| chr5_3 | CDS | 60728963 | 60729299 | 60728963 | ID=Msa0822380-mRNA-1:cds;Parent=Msa0822380-mRNA-1 |
| chr5_3 | CDS | 60727800 | 60727850 | 60727800 | ID=Msa0822380-mRNA-1:cds;Parent=Msa0822380-mRNA-1 |
| chr5_3 | CDS | 60727491 | 60727663 | 60727491 | ID=Msa0822380-mRNA-1:cds;Parent=Msa0822380-mRNA-1 |
| chr5_3 | CDS | 60726682 | 60726917 | 60726682 | ID=Msa0822380-mRNA-1:cds;Parent=Msa0822380-mRNA-1 |
| chr5_3 | CDS | 60725066 | 60725435 | 60725066 | ID=Msa0822380-mRNA-1:cds;Parent=Msa0822380-mRNA-1 |
| chr5_3 | three_prime_UTR | 60724875 | 60725065 | 60724875 | ID=Msa0822380-mRNA-1:three_prime_utr;Parent=Msa0822380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
