AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1084630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1084630 MtrunA17_Chr5g0442671 92.784 388 21 2 1 381 1 388 0.0 741
Msa1084630 MtrunA17_Chr3g0095661 79.146 398 63 5 1 381 1 395 0.0 629
Msa1084630 MtrunA17_Chr5g0433601 76.276 333 75 2 43 374 100 429 0.0 534
Msa1084630 MtrunA17_Chr3g0121311 64.634 328 108 2 46 373 57 376 4.83e-156 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1084630 AT5G17230.2 79.217 332 62 2 43 370 85 413 0.0 550
Msa1084630 AT5G17230.1 79.217 332 62 2 43 370 85 413 0.0 550
Msa1084630 AT5G17230.4 79.217 332 62 2 43 370 85 413 0.0 550
Msa1084630 AT5G17230.3 75.793 347 62 3 43 370 85 428 0.0 541

Find 82 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATAATAACTTCACAAAA+AGG 0.232010 7_2:+85055884 Msa1084630:CDS
GCATCATCTCATAAACAATT+TGG 0.245018 7_2:-85055986 None:intergenic
CTTTATTGTTACTATGTTGC+TGG 0.254005 7_2:+85054229 Msa1084630:CDS
TCATGAAGGGACAAATAAAA+AGG 0.256763 7_2:+85055740 Msa1084630:CDS
CATAGACACATTATTAAAAT+AGG 0.291933 7_2:-85056008 None:intergenic
TCTGTAGAAGCCTTGGATTC+AGG 0.303642 7_2:-85054292 None:intergenic
TAAGTACCCTGTTGATATTC+AGG 0.310562 7_2:+85053514 Msa1084630:CDS
AGATGTCTAGTATTGTTGTT+AGG 0.314970 7_2:+85051724 None:intergenic
AAGAACGCCGAAAAGCTATA+TGG 0.335633 7_2:+85053193 Msa1084630:CDS
TGTGAAGTTATTATAATCAT+TGG 0.341584 7_2:-85055878 None:intergenic
TTATCACTACCAGCTGCTTA+TGG 0.342219 7_2:+85055934 Msa1084630:CDS
TCAGGTGCTATTCCCATTAC+AGG 0.342367 7_2:-85054274 None:intergenic
TCCAACATCTCTGAGTATAT+TGG 0.357053 7_2:-85054362 None:intergenic
AAGAGAAAAGAGTGTAAGAA+TGG 0.370228 7_2:+85051794 Msa1084630:CDS
CCTCTCCTCTGACTTCTTGA+AGG 0.371622 7_2:-85051861 None:intergenic
GTTCTTTGATGAAGCAGAAA+AGG 0.373517 7_2:+85055771 Msa1084630:CDS
TTGGTGGGTATTTCTAGAAT+TGG 0.377918 7_2:+85051768 Msa1084630:CDS
AGAGTGTAAGAATGGGTTCT+AGG 0.388815 7_2:+85051802 Msa1084630:CDS
AAAGCTATATGGGCAATCTA+TGG 0.391917 7_2:+85053204 Msa1084630:CDS
GTGTGATGTGTGAAGCATTT+GGG 0.394039 7_2:-85053397 None:intergenic
CCATTCAAGGACATGATAGA+AGG 0.398564 7_2:+85054154 Msa1084630:CDS
GGGCAGCATTGTTGTTATAT+AGG 0.404583 7_2:+85055833 Msa1084630:CDS
TGAAGTACCTGAATATCAAC+AGG 0.410981 7_2:-85053521 None:intergenic
GGTGTGATGTGTGAAGCATT+TGG 0.411963 7_2:-85053398 None:intergenic
TAAGAATGGGTTCTAGGATA+AGG 0.419173 7_2:+85051808 Msa1084630:CDS
TCCCATCTGTCCAAGGCTGC+TGG 0.419670 7_2:-85053419 None:intergenic
CTTATGAGTGTTCCTGTAAT+GGG 0.421342 7_2:+85054262 Msa1084630:CDS
GCATAATGTCTTCATCTGAT+AGG 0.425370 7_2:-85055687 None:intergenic
TTTATTGTTACTATGTTGCT+GGG 0.438390 7_2:+85054230 Msa1084630:CDS
AGCTCAGTTCTGCTAGTAGA+TGG 0.444906 7_2:+85055803 Msa1084630:CDS
GATGTCTAGTATTGTTGTTA+GGG 0.445851 7_2:+85051725 None:intergenic
TCTTATGAGTGTTCCTGTAA+TGG 0.447627 7_2:+85054261 Msa1084630:CDS
CAGCAACATAGTAACAATAA+AGG 0.448850 7_2:-85054228 None:intergenic
CATCATTCATTATATGAAGT+AGG 0.463124 7_2:+85056160 Msa1084630:three_prime_UTR
GCAGCATCAAACATATCATA+TGG 0.464921 7_2:-85053473 None:intergenic
TTATTTGAAATAGCCATTCA+AGG 0.465866 7_2:+85054141 Msa1084630:intron
CCTTCTATCATGTCCTTGAA+TGG 0.471429 7_2:-85054154 None:intergenic
CACCAGCAGCCTTGGACAGA+TGG 0.481447 7_2:+85053417 Msa1084630:CDS
TTTGGTGAGAGAAGATAGGA+GGG 0.481973 7_2:+85051913 Msa1084630:CDS
AGAGAAAAGAGTGTAAGAAT+GGG 0.484304 7_2:+85051795 Msa1084630:CDS
AATGCTCTCTGTAGAAGCCT+TGG 0.487506 7_2:-85054299 None:intergenic
TTCTTTGATGAAGCAGAAAA+GGG 0.493216 7_2:+85055772 Msa1084630:CDS
TGCTAGTAGATGGCCTGTGT+GGG 0.498713 7_2:+85055813 Msa1084630:CDS
AGAACGCCGAAAAGCTATAT+GGG 0.501743 7_2:+85053194 Msa1084630:CDS
ACACATCACACCAGCAGCCT+TGG 0.504549 7_2:+85053409 Msa1084630:CDS
AGAACTGATGAACTAGTAGA+TGG 0.508686 7_2:+85053374 Msa1084630:CDS
GAGCATTTATAATGCTGCAT+TGG 0.509388 7_2:+85054315 Msa1084630:CDS
GTTATGATTACATACATCTC+AGG 0.512181 7_2:+85056105 Msa1084630:three_prime_UTR
CATGATAGAAGGGATGAGGA+TGG 0.512203 7_2:+85054165 Msa1084630:CDS
TATAATGCTGCATTGGCACT+AGG 0.516591 7_2:+85054322 Msa1084630:CDS
TATTGAATTCTGCTTATGAT+CGG 0.518807 7_2:+85051996 Msa1084630:CDS
TACTATGTTGCTGGGACAGT+AGG 0.527506 7_2:+85054238 Msa1084630:CDS
ACCAATATACTCAGAGATGT+TGG 0.528223 7_2:+85054361 Msa1084630:CDS
CTTGTGCTAGCTCATCTTGA+GGG 0.529549 7_2:-85055660 None:intergenic
ACCAGCAGCCTTGGACAGAT+GGG 0.533995 7_2:+85053418 Msa1084630:CDS
CAGGTTTGGTGAGAGAAGAT+AGG 0.541572 7_2:+85051909 Msa1084630:CDS
GTTTGGTGAGAGAAGATAGG+AGG 0.542876 7_2:+85051912 Msa1084630:CDS
GTGGAAAAGTAACAGACAAA+TGG 0.545459 7_2:+85055710 Msa1084630:CDS
CAAGATGAGCTAGCACAAGC+TGG 0.546911 7_2:+85055664 Msa1084630:CDS
CTTCAAGAAGTCAGAGGAGA+GGG 0.552612 7_2:+85051862 Msa1084630:CDS
CATTCAAGGACATGATAGAA+GGG 0.552755 7_2:+85054155 Msa1084630:CDS
CTGCTAGTAGATGGCCTGTG+TGG 0.559580 7_2:+85055812 Msa1084630:CDS
GGGAATAGCACCTGAATCCA+AGG 0.561665 7_2:+85054282 Msa1084630:CDS
GAATTGTGATGCAAAATCAT+TGG 0.562271 7_2:+85051749 Msa1084630:CDS
CAAATGGAGAAATTTCATGA+AGG 0.564295 7_2:+85055726 Msa1084630:CDS
AGGACATGATAGAAGGGATG+AGG 0.567252 7_2:+85054161 Msa1084630:CDS
CCGTTGCTCCCATCTGTCCA+AGG 0.572170 7_2:-85053426 None:intergenic
GCTTGTGCTAGCTCATCTTG+AGG 0.572873 7_2:-85055661 None:intergenic
GATTATGATAGTGCTAGAAG+AGG 0.580690 7_2:+85055625 Msa1084630:intron
AAATGGAGAAATTTCATGAA+GGG 0.583483 7_2:+85055727 Msa1084630:CDS
AGTGCAGTTCCATAAGCAGC+TGG 0.587800 7_2:-85055943 None:intergenic
TACTAAGGAAGGAGTACCAA+AGG 0.591959 7_2:-85056188 None:intergenic
TTGTGATGCAAAATCATTGG+TGG 0.618059 7_2:+85051752 Msa1084630:CDS
CAGAACCTTCAAGAAGTCAG+AGG 0.622131 7_2:+85051856 Msa1084630:CDS
CCTTGGACAGATGGGAGCAA+CGG 0.633759 7_2:+85053426 Msa1084630:CDS
AACAACAATGCTGCCCACAC+AGG 0.638058 7_2:-85055826 None:intergenic
CCTTCAAGAAGTCAGAGGAG+AGG 0.641176 7_2:+85051861 Msa1084630:CDS
TGTGATGCAAAATCATTGGT+GGG 0.648026 7_2:+85051753 Msa1084630:CDS
TCAGATGAAGACATTATGCG+TGG 0.650440 7_2:+85055691 Msa1084630:CDS
TTGGTGAGAGAAGATAGGAG+GGG 0.683654 7_2:+85051914 Msa1084630:CDS
AATTCTGCTTATGATCGGTG+TGG 0.729934 7_2:+85052001 Msa1084630:CDS
GAAGTACCTGAATATCAACA+GGG 0.777322 7_2:-85053520 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATGTTATTTTTATTTTTT+TGG - chr7_2:85053281-85053300 None:intergenic 10.0%
!!! ATTTCTCTTTTTATTTAATA+CGG + chr7_2:85054588-85054607 Msa1084630:intron 10.0%
!! ATAACAATAGTTAAATAAAA+AGG + chr7_2:85054766-85054785 Msa1084630:intron 10.0%
!! GGATTTAATTATAAAAAAAA+AGG - chr7_2:85055402-85055421 None:intergenic 10.0%
!!! TTATTTTACACTTAATTGAA+TGG + chr7_2:85052369-85052388 Msa1084630:intron 15.0%
!!! GAAAAAATAAACATTTTCAA+TGG - chr7_2:85052679-85052698 None:intergenic 15.0%
!!! TGAAAATGTTTATTTTTTCA+TGG + chr7_2:85052680-85052699 Msa1084630:intron 15.0%
!!! AAATATTTTGTTGTGTTTAA+TGG - chr7_2:85052857-85052876 None:intergenic 15.0%
!!! AATAATGTATTTTGATGTTA+GGG + chr7_2:85053017-85053036 Msa1084630:intron 15.0%
!!! TATTAAGTCCTTTTTTTTTT+TGG + chr7_2:85053308-85053327 Msa1084630:intron 15.0%
!!! AAGTGAATTTTTTTAGTTTT+TGG - chr7_2:85053733-85053752 None:intergenic 15.0%
!!! TTGAAATAGTATATAGTTTT+TGG - chr7_2:85054430-85054449 None:intergenic 15.0%
!!! TTTCTCTTTTTATTTAATAC+GGG + chr7_2:85054589-85054608 Msa1084630:intron 15.0%
!!! TCTTTGAACATTTTTTTTTT+GGG + chr7_2:85054839-85054858 Msa1084630:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr7_2:85055327-85055346 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr7_2:85055135-85055154 Msa1084630:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr7_2:85055326-85055345 Msa1084630:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr7_2:85055327-85055346 Msa1084630:intron 15.0%
!! ATTATAATAACTTCACAAAA+AGG + chr7_2:85055884-85055903 Msa1084630:CDS 15.0%
!! TTATAATAACTTCACAAAAA+GGG + chr7_2:85055885-85055904 Msa1084630:CDS 15.0%
!! ATTGAAAATTCTGAATATTG+TGG - chr7_2:85052142-85052161 None:intergenic 20.0%
!! TAGAAAATAAAACTTCTATC+TGG - chr7_2:85052802-85052821 None:intergenic 20.0%
!!! GAAGTTATTTCAATTAAGTT+AGG + chr7_2:85052951-85052970 Msa1084630:intron 20.0%
!! CATCAAAATACATTATTGAA+GGG - chr7_2:85053014-85053033 None:intergenic 20.0%
!! ACATCAAAATACATTATTGA+AGG - chr7_2:85053015-85053034 None:intergenic 20.0%
!!! CAATAATGTATTTTGATGTT+AGG + chr7_2:85053016-85053035 Msa1084630:intron 20.0%
!!! ATAATGTATTTTGATGTTAG+GGG + chr7_2:85053018-85053037 Msa1084630:intron 20.0%
!!! GTATTTTGGAGTATATTTTT+TGG + chr7_2:85053071-85053090 Msa1084630:intron 20.0%
!!! TATATTTTTTGGATGGATTT+GGG + chr7_2:85053082-85053101 Msa1084630:intron 20.0%
!! ATCTTTCAATTGTACAATTT+AGG + chr7_2:85053153-85053172 Msa1084630:intron 20.0%
!!! TTGATGATGATATCATAATT+TGG - chr7_2:85053258-85053277 None:intergenic 20.0%
!! ATTCCAAACCAAAAAAAAAA+AGG - chr7_2:85053319-85053338 None:intergenic 20.0%
!!! AAGGTTGAGATTTAAATTTT+AGG - chr7_2:85053556-85053575 None:intergenic 20.0%
!! TATATGAAACATGTAATGTA+AGG - chr7_2:85053575-85053594 None:intergenic 20.0%
!! GATAATGCATAATATATGAA+AGG + chr7_2:85053682-85053701 Msa1084630:intron 20.0%
!!! TGAATTTTTTTAGTTTTTGG+TGG - chr7_2:85053730-85053749 None:intergenic 20.0%
!!! AAAATCAAAGTTGATTTTAG+AGG + chr7_2:85053804-85053823 Msa1084630:intron 20.0%
!! AAAATTGATCTTATTGACAT+TGG + chr7_2:85054113-85054132 Msa1084630:intron 20.0%
!! TTGAAATTAAATTCCTTTCT+TGG + chr7_2:85054643-85054662 Msa1084630:intron 20.0%
!! TGAAATTAAATTCCTTTCTT+GGG + chr7_2:85054644-85054663 Msa1084630:intron 20.0%
!!! GTCTTTGAACATTTTTTTTT+TGG + chr7_2:85054838-85054857 Msa1084630:intron 20.0%
!! TTCAAAAGTTTAAGAGTTTA+AGG - chr7_2:85055004-85055023 None:intergenic 20.0%
!!! AATTTTGCAACAATTTTTTG+CGG + chr7_2:85055170-85055189 Msa1084630:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr7_2:85055264-85055283 Msa1084630:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr7_2:85055265-85055284 Msa1084630:intron 20.0%
!!! ATAATGTATTGACAAATTCA+TGG - chr7_2:85055423-85055442 None:intergenic 20.0%
!! TGTGAAGTTATTATAATCAT+TGG - chr7_2:85055881-85055900 None:intergenic 20.0%
!!! AACAATTTGGTTAACTTTTT+AGG - chr7_2:85055976-85055995 None:intergenic 20.0%
!! CATAGACACATTATTAAAAT+AGG - chr7_2:85056011-85056030 None:intergenic 20.0%
!!! GATTTTGAGAAAACAATTGA+AGG + chr7_2:85051953-85051972 Msa1084630:CDS 25.0%
! TATTGAATTCTGCTTATGAT+CGG + chr7_2:85051996-85052015 Msa1084630:CDS 25.0%
! AGAAAGAAAGAAAAATACCT+AGG - chr7_2:85052060-85052079 None:intergenic 25.0%
! TATAATGCATTAGATAACAG+AGG + chr7_2:85052725-85052744 Msa1084630:intron 25.0%
! ATAATGCATTAGATAACAGA+GGG + chr7_2:85052726-85052745 Msa1084630:intron 25.0%
!!! ATGGAGGAAATTTTAAGTAT+TGG - chr7_2:85052838-85052857 None:intergenic 25.0%
!!! TATTTTGTTGTGTTTAATGG+AGG - chr7_2:85052854-85052873 None:intergenic 25.0%
!!! TTTGGAGTATATTTTTTGGA+TGG + chr7_2:85053075-85053094 Msa1084630:intron 25.0%
!!! GTATATTTTTTGGATGGATT+TGG + chr7_2:85053081-85053100 Msa1084630:intron 25.0%
!!! AGTCCTTTTTTTTTTTGGTT+TGG + chr7_2:85053313-85053332 Msa1084630:intron 25.0%
!!! ATTTTTTTAGTTTTTGGTGG+TGG - chr7_2:85053727-85053746 None:intergenic 25.0%
!!! AATCAACTTTGATTTTTCGT+GGG - chr7_2:85053800-85053819 None:intergenic 25.0%
!!! AAATCAACTTTGATTTTTCG+TGG - chr7_2:85053801-85053820 None:intergenic 25.0%
! CTAAAAAAAACAATTGTGTG+TGG - chr7_2:85053865-85053884 None:intergenic 25.0%
!!! CACACACAATTGTTTTTTTT+AGG + chr7_2:85053863-85053882 Msa1084630:intron 25.0%
! ACAATTAAGTGTGTGAATTT+CGG - chr7_2:85053927-85053946 None:intergenic 25.0%
! CAATATCGATAATGTTAAGT+TGG - chr7_2:85053982-85054001 None:intergenic 25.0%
!! TTATTTGAAATAGCCATTCA+AGG + chr7_2:85054141-85054160 Msa1084630:intron 25.0%
! TTTATTGTTACTATGTTGCT+GGG + chr7_2:85054230-85054249 Msa1084630:CDS 25.0%
! GAAATTAAATTCCTTTCTTG+GGG + chr7_2:85054645-85054664 Msa1084630:intron 25.0%
! TCTTAATACCTTCTAACTAA+AGG + chr7_2:85054704-85054723 Msa1084630:intron 25.0%
! CTTAATACCTTCTAACTAAA+GGG + chr7_2:85054705-85054724 Msa1084630:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr7_2:85054975-85054994 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr7_2:85054976-85054995 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr7_2:85055298-85055317 Msa1084630:intron 25.0%
!! TTTTCCCAATGACTTTAATT+AGG + chr7_2:85055445-85055464 Msa1084630:intron 25.0%
! TGAACCTAATTAAAGTCATT+GGG - chr7_2:85055452-85055471 None:intergenic 25.0%
! ATGAACCTAATTAAAGTCAT+TGG - chr7_2:85055453-85055472 None:intergenic 25.0%
! AAATGGAGAAATTTCATGAA+GGG + chr7_2:85055727-85055746 Msa1084630:CDS 25.0%
! CATCATTCATTATATGAAGT+AGG + chr7_2:85056160-85056179 Msa1084630:three_prime_UTR 25.0%
GAATTGTGATGCAAAATCAT+TGG + chr7_2:85051749-85051768 Msa1084630:CDS 30.0%
! AAGAGAAAAGAGTGTAAGAA+TGG + chr7_2:85051794-85051813 Msa1084630:CDS 30.0%
! AGAGAAAAGAGTGTAAGAAT+GGG + chr7_2:85051795-85051814 Msa1084630:CDS 30.0%
!! ATTGAAGGTGATTTTAGCAA+TGG + chr7_2:85051968-85051987 Msa1084630:CDS 30.0%
AATACCTAGGTAAAAAGTCT+TGG - chr7_2:85052047-85052066 None:intergenic 30.0%
! TCCATTTTCGTAAGTTTCAT+TGG + chr7_2:85052178-85052197 Msa1084630:intron 30.0%
! CCATTTTCGTAAGTTTCATT+GGG + chr7_2:85052179-85052198 Msa1084630:intron 30.0%
! CATTTTCGTAAGTTTCATTG+GGG + chr7_2:85052180-85052199 Msa1084630:intron 30.0%
! ATTTTCGTAAGTTTCATTGG+GGG + chr7_2:85052181-85052200 Msa1084630:intron 30.0%
TCTTCATTCTTGAATATGTG+TGG - chr7_2:85052218-85052237 None:intergenic 30.0%
ACTGAGACTATGAAAGTTAT+TGG + chr7_2:85052412-85052431 Msa1084630:intron 30.0%
CTGAGACTATGAAAGTTATT+GGG + chr7_2:85052413-85052432 Msa1084630:intron 30.0%
AATGAGTCAATGGAAGTTAA+AGG + chr7_2:85052438-85052457 Msa1084630:intron 30.0%
GTTAGGAAAGCAATTAAGTT+AGG + chr7_2:85052968-85052987 Msa1084630:intron 30.0%
ATTGAAGGGTCTATATCAAT+TGG - chr7_2:85053000-85053019 None:intergenic 30.0%
! TGGTTAGATCGTTAGTATTT+TGG + chr7_2:85053057-85053076 Msa1084630:intron 30.0%
CATAATATATGAAAGGTCTG+AGG + chr7_2:85053689-85053708 Msa1084630:intron 30.0%
!! AACGTCAAAGTTGATTTTAG+AGG + chr7_2:85053758-85053777 Msa1084630:intron 30.0%
ATTAATTTCACCCACGAAAA+AGG + chr7_2:85053787-85053806 Msa1084630:intron 30.0%
! TTTGTTATATGTAGACGAAG+TGG + chr7_2:85053892-85053911 Msa1084630:intron 30.0%
CAGCAACATAGTAACAATAA+AGG - chr7_2:85054231-85054250 None:intergenic 30.0%
CTTTATTGTTACTATGTTGC+TGG + chr7_2:85054229-85054248 Msa1084630:CDS 30.0%
!! TCAAAGATTAGTCTCATAGT+GGG - chr7_2:85054550-85054569 None:intergenic 30.0%
TATGAGACTAATCTTTGAGT+CGG + chr7_2:85054552-85054571 Msa1084630:intron 30.0%
TAAGAAACCAACATGATGTT+CGG - chr7_2:85054689-85054708 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr7_2:85055358-85055377 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr7_2:85055357-85055376 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr7_2:85054898-85054917 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr7_2:85055038-85055057 Msa1084630:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG + chr7_2:85055297-85055316 Msa1084630:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr7_2:85055357-85055376 Msa1084630:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr7_2:85055358-85055377 Msa1084630:intron 30.0%
CAAATGGAGAAATTTCATGA+AGG + chr7_2:85055726-85055745 Msa1084630:CDS 30.0%
TCATGAAGGGACAAATAAAA+AGG + chr7_2:85055740-85055759 Msa1084630:CDS 30.0%
CATGAAGGGACAAATAAAAA+GGG + chr7_2:85055741-85055760 Msa1084630:CDS 30.0%
TTCTTTGATGAAGCAGAAAA+GGG + chr7_2:85055772-85055791 Msa1084630:CDS 30.0%
GCATCATCTCATAAACAATT+TGG - chr7_2:85055989-85056008 None:intergenic 30.0%
GTTATGATTACATACATCTC+AGG + chr7_2:85056105-85056124 Msa1084630:three_prime_UTR 30.0%
! TATGAAGTAGGTTTTTCCTT+TGG + chr7_2:85056172-85056191 Msa1084630:three_prime_UTR 30.0%
TTGTGATGCAAAATCATTGG+TGG + chr7_2:85051752-85051771 Msa1084630:CDS 35.0%
TGTGATGCAAAATCATTGGT+GGG + chr7_2:85051753-85051772 Msa1084630:CDS 35.0%
!! TTGGTGGGTATTTCTAGAAT+TGG + chr7_2:85051768-85051787 Msa1084630:CDS 35.0%
!! TAAGAATGGGTTCTAGGATA+AGG + chr7_2:85051808-85051827 Msa1084630:CDS 35.0%
! TATGCCAAGACTTTTTACCT+AGG + chr7_2:85052040-85052059 Msa1084630:CDS 35.0%
CCCAATGAAACTTACGAAAA+TGG - chr7_2:85052182-85052201 None:intergenic 35.0%
TTATTGGGAGAATGAGTCAA+TGG + chr7_2:85052428-85052447 Msa1084630:intron 35.0%
TTTCATGGAGTGATTATGAG+AGG + chr7_2:85052695-85052714 Msa1084630:intron 35.0%
!! GAGTTGATAGAAAACGATGA+TGG - chr7_2:85052774-85052793 None:intergenic 35.0%
! AGATTGCCCATATAGCTTTT+CGG - chr7_2:85053203-85053222 None:intergenic 35.0%
AAAGCTATATGGGCAATCTA+TGG + chr7_2:85053204-85053223 Msa1084630:CDS 35.0%
TTTCATTGTGCATTGCAGTA+TGG + chr7_2:85053345-85053364 Msa1084630:intron 35.0%
AGAACTGATGAACTAGTAGA+TGG + chr7_2:85053374-85053393 Msa1084630:CDS 35.0%
GCAGCATCAAACATATCATA+TGG - chr7_2:85053476-85053495 None:intergenic 35.0%
TAAGTACCCTGTTGATATTC+AGG + chr7_2:85053514-85053533 Msa1084630:CDS 35.0%
! GAAGTACCTGAATATCAACA+GGG - chr7_2:85053523-85053542 None:intergenic 35.0%
! TGAAGTACCTGAATATCAAC+AGG - chr7_2:85053524-85053543 None:intergenic 35.0%
ACTAAGCATACACTTAGTTG+TGG - chr7_2:85053626-85053645 None:intergenic 35.0%
ATTAAGTGTGTGAATTTCGG+CGG - chr7_2:85053924-85053943 None:intergenic 35.0%
CACACTTAATTGTGAGATTC+CGG + chr7_2:85053934-85053953 Msa1084630:intron 35.0%
TCGATATTGTCTGTTGAGTT+AGG + chr7_2:85053993-85054012 Msa1084630:intron 35.0%
CATTCAAGGACATGATAGAA+GGG + chr7_2:85054155-85054174 Msa1084630:CDS 35.0%
TCTTATGAGTGTTCCTGTAA+TGG + chr7_2:85054261-85054280 Msa1084630:CDS 35.0%
CTTATGAGTGTTCCTGTAAT+GGG + chr7_2:85054262-85054281 Msa1084630:CDS 35.0%
GAGCATTTATAATGCTGCAT+TGG + chr7_2:85054315-85054334 Msa1084630:CDS 35.0%
ACCAATATACTCAGAGATGT+TGG + chr7_2:85054361-85054380 Msa1084630:CDS 35.0%
TCCAACATCTCTGAGTATAT+TGG - chr7_2:85054365-85054384 None:intergenic 35.0%
!! CTCAAAGATTAGTCTCATAG+TGG - chr7_2:85054551-85054570 None:intergenic 35.0%
AAGAAACCAACATGATGTTC+GGG - chr7_2:85054688-85054707 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr7_2:85055342-85055361 Msa1084630:intron 35.0%
! GATTATGATAGTGCTAGAAG+AGG + chr7_2:85055625-85055644 Msa1084630:intron 35.0%
GCATAATGTCTTCATCTGAT+AGG - chr7_2:85055690-85055709 None:intergenic 35.0%
GTGGAAAAGTAACAGACAAA+TGG + chr7_2:85055710-85055729 Msa1084630:CDS 35.0%
GTTCTTTGATGAAGCAGAAA+AGG + chr7_2:85055771-85055790 Msa1084630:CDS 35.0%
TTCACAAAAAGGGCTTATGT+TGG + chr7_2:85055895-85055914 Msa1084630:CDS 35.0%
! AGAGTGTAAGAATGGGTTCT+AGG + chr7_2:85051802-85051821 Msa1084630:CDS 40.0%
!! ATGGGTTCTAGGATAAGGTT+TGG + chr7_2:85051813-85051832 Msa1084630:intron 40.0%
! TCTAGGATAAGGTTTGGAAG+TGG + chr7_2:85051819-85051838 Msa1084630:intron 40.0%
CTAGGATAAGGTTTGGAAGT+GGG + chr7_2:85051820-85051839 Msa1084630:intron 40.0%
TAGGATAAGGTTTGGAAGTG+GGG + chr7_2:85051821-85051840 Msa1084630:intron 40.0%
!!! GAAGTAGTTTTGAAGCAAGC+AGG + chr7_2:85051890-85051909 Msa1084630:CDS 40.0%
!!! AGTTTTGAAGCAAGCAGGTT+TGG + chr7_2:85051895-85051914 Msa1084630:CDS 40.0%
TTTGGTGAGAGAAGATAGGA+GGG + chr7_2:85051913-85051932 Msa1084630:CDS 40.0%
AATTCTGCTTATGATCGGTG+TGG + chr7_2:85052001-85052020 Msa1084630:CDS 40.0%
AAGAACGCCGAAAAGCTATA+TGG + chr7_2:85053193-85053212 Msa1084630:CDS 40.0%
AGAACGCCGAAAAGCTATAT+GGG + chr7_2:85053194-85053213 Msa1084630:CDS 40.0%
! GTGTGATGTGTGAAGCATTT+GGG - chr7_2:85053400-85053419 None:intergenic 40.0%
!!! TTTTAGTTTTTGGTGGTGGC+CGG - chr7_2:85053723-85053742 None:intergenic 40.0%
! TGAGATTCCGGATTTGAGTT+CGG + chr7_2:85053946-85053965 Msa1084630:intron 40.0%
CCTTCTATCATGTCCTTGAA+TGG - chr7_2:85054157-85054176 None:intergenic 40.0%
CCATTCAAGGACATGATAGA+AGG + chr7_2:85054154-85054173 Msa1084630:CDS 40.0%
! TATAATGCTGCATTGGCACT+AGG + chr7_2:85054322-85054341 Msa1084630:CDS 40.0%
TTTCTAACCCACCGAAACTA+GGG + chr7_2:85054471-85054490 Msa1084630:intron 40.0%
TATAAGACCCTAGTTTCGGT+GGG - chr7_2:85054481-85054500 None:intergenic 40.0%
TGAGTTGTCCGCATAGATTA+AGG - chr7_2:85054516-85054535 None:intergenic 40.0%
ATTCCTGAAGTTCATCAGAG+AGG - chr7_2:85054624-85054643 None:intergenic 40.0%
AGAAACCAACATGATGTTCG+GGG - chr7_2:85054687-85054706 None:intergenic 40.0%
TGAGAAGCCCTTTAGTTAGA+AGG - chr7_2:85054715-85054734 None:intergenic 40.0%
! AAGGTTTTCATTCTCGCGAT+CGG + chr7_2:85054785-85054804 Msa1084630:intron 40.0%
TCAGATGAAGACATTATGCG+TGG + chr7_2:85055691-85055710 Msa1084630:CDS 40.0%
! GGGCAGCATTGTTGTTATAT+AGG + chr7_2:85055833-85055852 Msa1084630:CDS 40.0%
TTATCACTACCAGCTGCTTA+TGG + chr7_2:85055934-85055953 Msa1084630:CDS 40.0%
! GCTTATGGAACTGCACTTTT+AGG + chr7_2:85055949-85055968 Msa1084630:CDS 40.0%
AGGATAAGGTTTGGAAGTGG+GGG + chr7_2:85051822-85051841 Msa1084630:intron 45.0%
CAGAACCTTCAAGAAGTCAG+AGG + chr7_2:85051856-85051875 Msa1084630:CDS 45.0%
CTTCAAGAAGTCAGAGGAGA+GGG + chr7_2:85051862-85051881 Msa1084630:CDS 45.0%
!! CAGGTTTGGTGAGAGAAGAT+AGG + chr7_2:85051909-85051928 Msa1084630:CDS 45.0%
! GTTTGGTGAGAGAAGATAGG+AGG + chr7_2:85051912-85051931 Msa1084630:CDS 45.0%
TTGGTGAGAGAAGATAGGAG+GGG + chr7_2:85051914-85051933 Msa1084630:CDS 45.0%
ATCACTTAGACCATCCCCAA+TGG + chr7_2:85052637-85052656 Msa1084630:intron 45.0%
ACACTAAGACCTCACCATTG+GGG - chr7_2:85052654-85052673 None:intergenic 45.0%
GACACTAAGACCTCACCATT+GGG - chr7_2:85052655-85052674 None:intergenic 45.0%
AGACACTAAGACCTCACCAT+TGG - chr7_2:85052656-85052675 None:intergenic 45.0%
GTTAGGGGCAAGCAATTAAG+TGG + chr7_2:85053033-85053052 Msa1084630:intron 45.0%
! GGTGTGATGTGTGAAGCATT+TGG - chr7_2:85053401-85053420 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG + chr7_2:85053660-85053679 Msa1084630:intron 45.0%
!!! TTTAGTTTTTGGTGGTGGCC+GGG - chr7_2:85053722-85053741 None:intergenic 45.0%
!! GTGGTCTTCTCCTTTTTCGT+GGG - chr7_2:85053846-85053865 None:intergenic 45.0%
!! TGTGGTCTTCTCCTTTTTCG+TGG - chr7_2:85053847-85053866 None:intergenic 45.0%
CTTTCGTCCGAACTCAAATC+CGG - chr7_2:85053956-85053975 None:intergenic 45.0%
GTCTGTTGAGTTAGGCCTTA+CGG + chr7_2:85054001-85054020 Msa1084630:intron 45.0%
AGACAATCGTGTAGTCCGTA+AGG - chr7_2:85054019-85054038 None:intergenic 45.0%
AGGACATGATAGAAGGGATG+AGG + chr7_2:85054161-85054180 Msa1084630:CDS 45.0%
CATGATAGAAGGGATGAGGA+TGG + chr7_2:85054165-85054184 Msa1084630:CDS 45.0%
TACTATGTTGCTGGGACAGT+AGG + chr7_2:85054238-85054257 Msa1084630:CDS 45.0%
!! TCAGGTGCTATTCCCATTAC+AGG - chr7_2:85054277-85054296 None:intergenic 45.0%
TCTGTAGAAGCCTTGGATTC+AGG - chr7_2:85054295-85054314 None:intergenic 45.0%
AATGCTCTCTGTAGAAGCCT+TGG - chr7_2:85054302-85054321 None:intergenic 45.0%
CTTTCTAACCCACCGAAACT+AGG + chr7_2:85054470-85054489 Msa1084630:intron 45.0%
GTATAAGACCCTAGTTTCGG+TGG - chr7_2:85054482-85054501 None:intergenic 45.0%
GCGGTATAAGACCCTAGTTT+CGG - chr7_2:85054485-85054504 None:intergenic 45.0%
! ATAGATTAAGGCGCCTATGG+CGG - chr7_2:85054504-85054523 None:intergenic 45.0%
CATAGGCGCCTTAATCTATG+CGG + chr7_2:85054505-85054524 Msa1084630:intron 45.0%
CTACCTCTCTGATGAACTTC+AGG + chr7_2:85054618-85054637 Msa1084630:intron 45.0%
GTAACACTCTTCCCCAAGAA+AGG - chr7_2:85054659-85054678 None:intergenic 45.0%
CTTGTGCTAGCTCATCTTGA+GGG - chr7_2:85055663-85055682 None:intergenic 45.0%
AGCTCAGTTCTGCTAGTAGA+TGG + chr7_2:85055803-85055822 Msa1084630:CDS 45.0%
!!! ATTTCTTTTTTTTTTTTTTT+TGG + chr7_2:85052091-85052110 Msa1084630:intron 5.0%
!!! AAATTTTACTTATTATTTAT+TGG + chr7_2:85052542-85052561 Msa1084630:intron 5.0%
!! ATTAAATATATATTAGTAAT+TGG - chr7_2:85052891-85052910 None:intergenic 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - chr7_2:85054942-85054961 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - chr7_2:85054943-85054962 None:intergenic 5.0%
!! GATTTAATTATAAAAAAAAA+GGG - chr7_2:85055401-85055420 None:intergenic 5.0%
CCTCTCCTCTGACTTCTTGA+AGG - chr7_2:85051864-85051883 None:intergenic 50.0%
CCTTCAAGAAGTCAGAGGAG+AGG + chr7_2:85051861-85051880 Msa1084630:CDS 50.0%
TTAGACCATCCCCAATGGTG+AGG + chr7_2:85052642-85052661 Msa1084630:intron 50.0%
TAAGACCTCACCATTGGGGA+TGG - chr7_2:85052650-85052669 None:intergenic 50.0%
GGGGCAAGCAATTAAGTGGT+TGG + chr7_2:85053037-85053056 Msa1084630:intron 50.0%
TCTCGTGAGCTTAGCTCAGT+TGG + chr7_2:85053655-85053674 Msa1084630:intron 50.0%
! AAGGTCTGAGGTTCAAACCC+CGG + chr7_2:85053701-85053720 Msa1084630:intron 50.0%
!!! TTAGTTTTTGGTGGTGGCCG+GGG - chr7_2:85053721-85053740 None:intergenic 50.0%
GGGAATAGCACCTGAATCCA+AGG + chr7_2:85054282-85054301 Msa1084630:CDS 50.0%
! CTAGGGTCTTATACCGCCAT+AGG + chr7_2:85054488-85054507 Msa1084630:intron 50.0%
! CGCATAGATTAAGGCGCCTA+TGG - chr7_2:85054507-85054526 None:intergenic 50.0%
CAACATGATGTTCGGGGAGT+TGG - chr7_2:85054681-85054700 None:intergenic 50.0%
CAACTCCCCGAACATCATGT+TGG + chr7_2:85054679-85054698 Msa1084630:intron 50.0%
GCTTGTGCTAGCTCATCTTG+AGG - chr7_2:85055664-85055683 None:intergenic 50.0%
CAAGATGAGCTAGCACAAGC+TGG + chr7_2:85055664-85055683 Msa1084630:CDS 50.0%
TGCTAGTAGATGGCCTGTGT+GGG + chr7_2:85055813-85055832 Msa1084630:CDS 50.0%
AACAACAATGCTGCCCACAC+AGG - chr7_2:85055829-85055848 None:intergenic 50.0%
AGTGCAGTTCCATAAGCAGC+TGG - chr7_2:85055946-85055965 None:intergenic 50.0%
ACACATCACACCAGCAGCCT+TGG + chr7_2:85053409-85053428 Msa1084630:CDS 55.0%
ACCAGCAGCCTTGGACAGAT+GGG + chr7_2:85053418-85053437 Msa1084630:CDS 55.0%
CCTTGGACAGATGGGAGCAA+CGG + chr7_2:85053426-85053445 Msa1084630:CDS 55.0%
CTGCTAGTAGATGGCCTGTG+TGG + chr7_2:85055812-85055831 Msa1084630:CDS 55.0%
! GTTTGGAAGTGGGGGTGCAG+TGG + chr7_2:85051830-85051849 Msa1084630:intron 60.0%
CACCAGCAGCCTTGGACAGA+TGG + chr7_2:85053417-85053436 Msa1084630:CDS 60.0%
TCCCATCTGTCCAAGGCTGC+TGG - chr7_2:85053422-85053441 None:intergenic 60.0%
CCGTTGCTCCCATCTGTCCA+AGG - chr7_2:85053429-85053448 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 85051726 85056196 85051726 ID=Msa1084630;Name=Msa1084630
chr7_2 mRNA 85051726 85056196 85051726 ID=Msa1084630-mRNA-1;Parent=Msa1084630;Name=Msa1084630-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.8|0.66|1|1|1|6|191|381
chr7_2 exon 85051726 85051829 85051726 ID=Msa1084630-mRNA-1:exon:22888;Parent=Msa1084630-mRNA-1
chr7_2 exon 85051850 85052061 85051850 ID=Msa1084630-mRNA-1:exon:22889;Parent=Msa1084630-mRNA-1
chr7_2 exon 85053175 85053225 85053175 ID=Msa1084630-mRNA-1:exon:22890;Parent=Msa1084630-mRNA-1
chr7_2 exon 85053363 85053535 85053363 ID=Msa1084630-mRNA-1:exon:22891;Parent=Msa1084630-mRNA-1
chr7_2 exon 85054154 85054389 85054154 ID=Msa1084630-mRNA-1:exon:22892;Parent=Msa1084630-mRNA-1
chr7_2 exon 85055636 85056196 85055636 ID=Msa1084630-mRNA-1:exon:22893;Parent=Msa1084630-mRNA-1
chr7_2 CDS 85051726 85051829 85051726 ID=Msa1084630-mRNA-1:cds;Parent=Msa1084630-mRNA-1
chr7_2 CDS 85051850 85052061 85051850 ID=Msa1084630-mRNA-1:cds;Parent=Msa1084630-mRNA-1
chr7_2 CDS 85053175 85053225 85053175 ID=Msa1084630-mRNA-1:cds;Parent=Msa1084630-mRNA-1
chr7_2 CDS 85053363 85053535 85053363 ID=Msa1084630-mRNA-1:cds;Parent=Msa1084630-mRNA-1
chr7_2 CDS 85054154 85054389 85054154 ID=Msa1084630-mRNA-1:cds;Parent=Msa1084630-mRNA-1
chr7_2 CDS 85055636 85056005 85055636 ID=Msa1084630-mRNA-1:cds;Parent=Msa1084630-mRNA-1
chr7_2 three_prime_UTR 85056006 85056196 85056006 ID=Msa1084630-mRNA-1:three_prime_utr;Parent=Msa1084630-mRNA-1
Gene Sequence

>Msa1084630

ATGTCTAGTATTGTTGTTAGGGTGAATTGTGATGCAAAATCATTGGTGGGTATTTCTAGAATTGGAAGAAGAGAAAAGAGTGTAAGAATGGGTTCTAGGATAAGTGGTAGCAGAACCTTCAAGAAGTCAGAGGAGAGGGTGTATGAAGTAGTTTTGAAGCAAGCAGGTTTGGTGAGAGAAGATAGGAGGGGTGCAAATATAGAATTTGATTTTGAGAAAACAATTGAAGGTGATTTTAGCAATGGAGATTTATTGAATTCTGCTTATGATCGGTGTGGTGAAGTTTGTGCTGAATATGCCAAGACTTTTTACCTAGGTACACAATTGATGACACAAGAACGCCGAAAAGCTATATGGGCAATCTATGTATGGTGTAGAAGAACTGATGAACTAGTAGATGGCCCAAATGCTTCACACATCACACCAGCAGCCTTGGACAGATGGGAGCAACGGTTAACTGATGTTTTTGAATGTCGACCATATGATATGTTTGATGCTGCTCTCTCACACACTGTCTCTAAGTACCCTGTTGATATTCAGCCATTCAAGGACATGATAGAAGGGATGAGGATGGATTTGAGAAAGTCAAGATACAACAACTTTGATGAGCTCTACCTTTATTGTTACTATGTTGCTGGGACAGTAGGTCTTATGAGTGTTCCTGTAATGGGAATAGCACCTGAATCCAAGGCTTCTACAGAGAGCATTTATAATGCTGCATTGGCACTAGGCATTGCAAATCAACTCACCAATATACTCAGAGATGTTGGAGAAGATGCTAGAAGAGGAAGAGTGTATCTCCCTCAAGATGAGCTAGCACAAGCTGGCCTATCAGATGAAGACATTATGCGTGGAAAAGTAACAGACAAATGGAGAAATTTCATGAAGGGACAAATAAAAAGGGCAAGAATGTTCTTTGATGAAGCAGAAAAGGGTGTCTCAGAGCTCAGTTCTGCTAGTAGATGGCCTGTGTGGGCAGCATTGTTGTTATATAGGCAGATATTAGATTCTATTGAAGCCAATGATTATAATAACTTCACAAAAAGGGCTTATGTTGGAAAAGTCAATAAGCTATTATCACTACCAGCTGCTTATGGAACTGCACTTTTAGGTCCTAAAAAGTTAACCAAATTGTTTATGAGATGA

Protein sequence

>Msa1084630

MSSIVVRVNCDAKSLVGISRIGRREKSVRMGSRISGSRTFKKSEERVYEVVLKQAGLVREDRRGANIEFDFEKTIEGDFSNGDLLNSAYDRCGEVCAEYAKTFYLGTQLMTQERRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEQRLTDVFECRPYDMFDAALSHTVSKYPVDIQPFKDMIEGMRMDLRKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESIYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIMRGKVTDKWRNFMKGQIKRARMFFDEAEKGVSELSSASRWPVWAALLLYRQILDSIEANDYNNFTKRAYVGKVNKLLSLPAAYGTALLGPKKLTKLFMR*