AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1400330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400330 MtrunA17_Chr5g0442671 92.784 388 21 2 1 381 1 388 0.0 741
Msa1400330 MtrunA17_Chr3g0095661 79.146 398 63 5 1 381 1 395 0.0 629
Msa1400330 MtrunA17_Chr5g0433601 76.276 333 75 2 43 374 100 429 0.0 534
Msa1400330 MtrunA17_Chr3g0121311 64.634 328 108 2 46 373 57 376 4.83e-156 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1400330 AT5G17230.2 79.217 332 62 2 43 370 85 413 0.0 550
Msa1400330 AT5G17230.1 79.217 332 62 2 43 370 85 413 0.0 550
Msa1400330 AT5G17230.4 79.217 332 62 2 43 370 85 413 0.0 550
Msa1400330 AT5G17230.3 75.793 347 62 3 43 370 85 428 0.0 541

Find 82 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTATAATAACTTCACAAAA+AGG 0.232010 tig0022441:+28453 Msa1400330:CDS
GCATCATCTCATAAACAATT+TGG 0.245018 tig0022441:-28555 None:intergenic
CTTTATTGTTACTATGTTGC+TGG 0.254005 tig0022441:+26798 Msa1400330:CDS
TCATGAAGGGACAAATAAAA+AGG 0.256763 tig0022441:+28309 Msa1400330:CDS
CATAGACACATTATTAAAAT+AGG 0.291933 tig0022441:-28577 None:intergenic
TCTGTAGAAGCCTTGGATTC+AGG 0.303642 tig0022441:-26861 None:intergenic
TAAGTACCCTGTTGATATTC+AGG 0.310562 tig0022441:+26083 Msa1400330:CDS
AGATGTCTAGTATTGTTGTT+AGG 0.314970 tig0022441:+24295 None:intergenic
AAGAACGCCGAAAAGCTATA+TGG 0.335633 tig0022441:+25762 Msa1400330:CDS
TGTGAAGTTATTATAATCAT+TGG 0.341584 tig0022441:-28447 None:intergenic
TTATCACTACCAGCTGCTTA+TGG 0.342219 tig0022441:+28503 Msa1400330:CDS
TCAGGTGCTATTCCCATTAC+AGG 0.342367 tig0022441:-26843 None:intergenic
TCCAACATCTCTGAGTATAT+TGG 0.357053 tig0022441:-26931 None:intergenic
AAGAGAAAAGAGTGTAAGAA+TGG 0.370228 tig0022441:+24365 Msa1400330:CDS
CCTCTCCTCTGACTTCTTGA+AGG 0.371622 tig0022441:-24432 None:intergenic
GTTCTTTGATGAAGCAGAAA+AGG 0.373517 tig0022441:+28340 Msa1400330:CDS
TTGGTGGGTATTTCTAGAAT+TGG 0.377918 tig0022441:+24339 Msa1400330:CDS
AGAGTGTAAGAATGGGTTCT+AGG 0.388815 tig0022441:+24373 Msa1400330:CDS
AAAGCTATATGGGCAATCTA+TGG 0.391917 tig0022441:+25773 Msa1400330:CDS
GTGTGATGTGTGAAGCATTT+GGG 0.394039 tig0022441:-25966 None:intergenic
CCATTCAAGGACATGATAGA+AGG 0.398564 tig0022441:+26723 Msa1400330:CDS
GGGCAGCATTGTTGTTATAT+AGG 0.404583 tig0022441:+28402 Msa1400330:CDS
TGAAGTACCTGAATATCAAC+AGG 0.410981 tig0022441:-26090 None:intergenic
GGTGTGATGTGTGAAGCATT+TGG 0.411963 tig0022441:-25967 None:intergenic
TAAGAATGGGTTCTAGGATA+AGG 0.419173 tig0022441:+24379 Msa1400330:CDS
TCCCATCTGTCCAAGGCTGC+TGG 0.419670 tig0022441:-25988 None:intergenic
CTTATGAGTGTTCCTGTAAT+GGG 0.421342 tig0022441:+26831 Msa1400330:CDS
GCATAATGTCTTCATCTGAT+AGG 0.425370 tig0022441:-28256 None:intergenic
TTTATTGTTACTATGTTGCT+GGG 0.438390 tig0022441:+26799 Msa1400330:CDS
AGCTCAGTTCTGCTAGTAGA+TGG 0.444906 tig0022441:+28372 Msa1400330:CDS
GATGTCTAGTATTGTTGTTA+GGG 0.445851 tig0022441:+24296 None:intergenic
TCTTATGAGTGTTCCTGTAA+TGG 0.447627 tig0022441:+26830 Msa1400330:CDS
CAGCAACATAGTAACAATAA+AGG 0.448850 tig0022441:-26797 None:intergenic
CATCATTCATTATATGAAGT+AGG 0.463124 tig0022441:+28729 Msa1400330:three_prime_UTR
GCAGCATCAAACATATCATA+TGG 0.464921 tig0022441:-26042 None:intergenic
TTATTTGAAATAGCCATTCA+AGG 0.465866 tig0022441:+26710 Msa1400330:intron
CCTTCTATCATGTCCTTGAA+TGG 0.471429 tig0022441:-26723 None:intergenic
CACCAGCAGCCTTGGACAGA+TGG 0.481447 tig0022441:+25986 Msa1400330:CDS
TTTGGTGAGAGAAGATAGGA+GGG 0.481973 tig0022441:+24484 Msa1400330:CDS
AGAGAAAAGAGTGTAAGAAT+GGG 0.484304 tig0022441:+24366 Msa1400330:CDS
AATGCTCTCTGTAGAAGCCT+TGG 0.487506 tig0022441:-26868 None:intergenic
TTCTTTGATGAAGCAGAAAA+GGG 0.493216 tig0022441:+28341 Msa1400330:CDS
TGCTAGTAGATGGCCTGTGT+GGG 0.498713 tig0022441:+28382 Msa1400330:CDS
AGAACGCCGAAAAGCTATAT+GGG 0.501743 tig0022441:+25763 Msa1400330:CDS
ACACATCACACCAGCAGCCT+TGG 0.504549 tig0022441:+25978 Msa1400330:CDS
AGAACTGATGAACTAGTAGA+TGG 0.508686 tig0022441:+25943 Msa1400330:CDS
GAGCATTTATAATGCTGCAT+TGG 0.509388 tig0022441:+26884 Msa1400330:CDS
GTTATGATTACATACATCTC+AGG 0.512181 tig0022441:+28674 Msa1400330:three_prime_UTR
CATGATAGAAGGGATGAGGA+TGG 0.512203 tig0022441:+26734 Msa1400330:CDS
TATAATGCTGCATTGGCACT+AGG 0.516591 tig0022441:+26891 Msa1400330:CDS
TATTGAATTCTGCTTATGAT+CGG 0.518807 tig0022441:+24567 Msa1400330:CDS
TACTATGTTGCTGGGACAGT+AGG 0.527506 tig0022441:+26807 Msa1400330:CDS
ACCAATATACTCAGAGATGT+TGG 0.528223 tig0022441:+26930 Msa1400330:CDS
CTTGTGCTAGCTCATCTTGA+GGG 0.529549 tig0022441:-28229 None:intergenic
ACCAGCAGCCTTGGACAGAT+GGG 0.533995 tig0022441:+25987 Msa1400330:CDS
CAGGTTTGGTGAGAGAAGAT+AGG 0.541572 tig0022441:+24480 Msa1400330:CDS
GTTTGGTGAGAGAAGATAGG+AGG 0.542876 tig0022441:+24483 Msa1400330:CDS
GTGGAAAAGTAACAGACAAA+TGG 0.545459 tig0022441:+28279 Msa1400330:CDS
CAAGATGAGCTAGCACAAGC+TGG 0.546911 tig0022441:+28233 Msa1400330:CDS
CTTCAAGAAGTCAGAGGAGA+GGG 0.552612 tig0022441:+24433 Msa1400330:CDS
CATTCAAGGACATGATAGAA+GGG 0.552755 tig0022441:+26724 Msa1400330:CDS
CTGCTAGTAGATGGCCTGTG+TGG 0.559580 tig0022441:+28381 Msa1400330:CDS
GGGAATAGCACCTGAATCCA+AGG 0.561665 tig0022441:+26851 Msa1400330:CDS
GAATTGTGATGCAAAATCAT+TGG 0.562271 tig0022441:+24320 Msa1400330:CDS
CAAATGGAGAAATTTCATGA+AGG 0.564295 tig0022441:+28295 Msa1400330:CDS
AGGACATGATAGAAGGGATG+AGG 0.567252 tig0022441:+26730 Msa1400330:CDS
CCGTTGCTCCCATCTGTCCA+AGG 0.572170 tig0022441:-25995 None:intergenic
GCTTGTGCTAGCTCATCTTG+AGG 0.572873 tig0022441:-28230 None:intergenic
GATTATGATAGTGCTAGAAG+AGG 0.580690 tig0022441:+28194 Msa1400330:intron
AAATGGAGAAATTTCATGAA+GGG 0.583483 tig0022441:+28296 Msa1400330:CDS
AGTGCAGTTCCATAAGCAGC+TGG 0.587800 tig0022441:-28512 None:intergenic
TACTAAGGAAGGAGTACCAA+AGG 0.591959 tig0022441:-28757 None:intergenic
TTGTGATGCAAAATCATTGG+TGG 0.618059 tig0022441:+24323 Msa1400330:CDS
CAGAACCTTCAAGAAGTCAG+AGG 0.622131 tig0022441:+24427 Msa1400330:CDS
CCTTGGACAGATGGGAGCAA+CGG 0.633759 tig0022441:+25995 Msa1400330:CDS
AACAACAATGCTGCCCACAC+AGG 0.638058 tig0022441:-28395 None:intergenic
CCTTCAAGAAGTCAGAGGAG+AGG 0.641176 tig0022441:+24432 Msa1400330:CDS
TGTGATGCAAAATCATTGGT+GGG 0.648026 tig0022441:+24324 Msa1400330:CDS
TCAGATGAAGACATTATGCG+TGG 0.650440 tig0022441:+28260 Msa1400330:CDS
TTGGTGAGAGAAGATAGGAG+GGG 0.683654 tig0022441:+24485 Msa1400330:CDS
AATTCTGCTTATGATCGGTG+TGG 0.729934 tig0022441:+24572 Msa1400330:CDS
GAAGTACCTGAATATCAACA+GGG 0.777322 tig0022441:-26089 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTCTTTTTTTTTTTTTT+TGG + tig0022441:24661-24680 Msa1400330:intron 10.0%
!!! GAATGTTATTTTTATTTTTT+TGG - tig0022441:25850-25869 None:intergenic 10.0%
!!! ATTTCTCTTTTTATTTAATA+CGG + tig0022441:27157-27176 Msa1400330:intron 10.0%
!! ATAACAATAGTTAAATAAAA+AGG + tig0022441:27335-27354 Msa1400330:intron 10.0%
!! GGATTTAATTATAAAAAAAA+AGG - tig0022441:27971-27990 None:intergenic 10.0%
!!! TTATTTTACACTTAATTGAA+TGG + tig0022441:24938-24957 Msa1400330:intron 15.0%
!!! GAAAAAATAAACATTTTCAA+TGG - tig0022441:25248-25267 None:intergenic 15.0%
!!! TGAAAATGTTTATTTTTTCA+TGG + tig0022441:25249-25268 Msa1400330:intron 15.0%
!!! AAATATTTTGTTGTGTTTAA+TGG - tig0022441:25426-25445 None:intergenic 15.0%
!!! AATAATGTATTTTGATGTTA+GGG + tig0022441:25586-25605 Msa1400330:intron 15.0%
!!! TATTAAGTCCTTTTTTTTTT+TGG + tig0022441:25877-25896 Msa1400330:intron 15.0%
!!! AAGTGAATTTTTTTAGTTTT+TGG - tig0022441:26302-26321 None:intergenic 15.0%
!!! TTGAAATAGTATATAGTTTT+TGG - tig0022441:26999-27018 None:intergenic 15.0%
!!! TTTCTCTTTTTATTTAATAC+GGG + tig0022441:27158-27177 Msa1400330:intron 15.0%
!!! TCTTTGAACATTTTTTTTTT+GGG + tig0022441:27408-27427 Msa1400330:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - tig0022441:27896-27915 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + tig0022441:27704-27723 Msa1400330:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + tig0022441:27895-27914 Msa1400330:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + tig0022441:27896-27915 Msa1400330:intron 15.0%
!! ATTATAATAACTTCACAAAA+AGG + tig0022441:28453-28472 Msa1400330:CDS 15.0%
!! TTATAATAACTTCACAAAAA+GGG + tig0022441:28454-28473 Msa1400330:CDS 15.0%
!! ATTGAAAATTCTGAATATTG+TGG - tig0022441:24712-24731 None:intergenic 20.0%
!! TAGAAAATAAAACTTCTATC+TGG - tig0022441:25371-25390 None:intergenic 20.0%
!!! GAAGTTATTTCAATTAAGTT+AGG + tig0022441:25520-25539 Msa1400330:intron 20.0%
!! CATCAAAATACATTATTGAA+GGG - tig0022441:25583-25602 None:intergenic 20.0%
!! ACATCAAAATACATTATTGA+AGG - tig0022441:25584-25603 None:intergenic 20.0%
!!! CAATAATGTATTTTGATGTT+AGG + tig0022441:25585-25604 Msa1400330:intron 20.0%
!!! ATAATGTATTTTGATGTTAG+GGG + tig0022441:25587-25606 Msa1400330:intron 20.0%
!!! GTATTTTGGAGTATATTTTT+TGG + tig0022441:25640-25659 Msa1400330:intron 20.0%
!!! TATATTTTTTGGATGGATTT+GGG + tig0022441:25651-25670 Msa1400330:intron 20.0%
!! ATCTTTCAATTGTACAATTT+AGG + tig0022441:25722-25741 Msa1400330:intron 20.0%
!!! TTGATGATGATATCATAATT+TGG - tig0022441:25827-25846 None:intergenic 20.0%
!! ATTCCAAACCAAAAAAAAAA+AGG - tig0022441:25888-25907 None:intergenic 20.0%
!!! AAGGTTGAGATTTAAATTTT+AGG - tig0022441:26125-26144 None:intergenic 20.0%
!! TATATGAAACATGTAATGTA+AGG - tig0022441:26144-26163 None:intergenic 20.0%
!! GATAATGCATAATATATGAA+AGG + tig0022441:26251-26270 Msa1400330:intron 20.0%
!!! TGAATTTTTTTAGTTTTTGG+TGG - tig0022441:26299-26318 None:intergenic 20.0%
!!! AAAATCAAAGTTGATTTTAG+AGG + tig0022441:26373-26392 Msa1400330:intron 20.0%
!! AAAATTGATCTTATTGACAT+TGG + tig0022441:26682-26701 Msa1400330:intron 20.0%
!! TTGAAATTAAATTCCTTTCT+TGG + tig0022441:27212-27231 Msa1400330:intron 20.0%
!! TGAAATTAAATTCCTTTCTT+GGG + tig0022441:27213-27232 Msa1400330:intron 20.0%
!!! GTCTTTGAACATTTTTTTTT+TGG + tig0022441:27407-27426 Msa1400330:intron 20.0%
!! TTCAAAAGTTTAAGAGTTTA+AGG - tig0022441:27573-27592 None:intergenic 20.0%
!!! AATTTTGCAACAATTTTTTG+CGG + tig0022441:27739-27758 Msa1400330:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + tig0022441:27833-27852 Msa1400330:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + tig0022441:27834-27853 Msa1400330:intron 20.0%
!!! ATAATGTATTGACAAATTCA+TGG - tig0022441:27992-28011 None:intergenic 20.0%
!! TGTGAAGTTATTATAATCAT+TGG - tig0022441:28450-28469 None:intergenic 20.0%
!!! AACAATTTGGTTAACTTTTT+AGG - tig0022441:28545-28564 None:intergenic 20.0%
!! CATAGACACATTATTAAAAT+AGG - tig0022441:28580-28599 None:intergenic 20.0%
!!! GATTTTGAGAAAACAATTGA+AGG + tig0022441:24524-24543 Msa1400330:CDS 25.0%
! TATTGAATTCTGCTTATGAT+CGG + tig0022441:24567-24586 Msa1400330:CDS 25.0%
! AGAAAGAAAGAAAAATACCT+AGG - tig0022441:24631-24650 None:intergenic 25.0%
! TATAATGCATTAGATAACAG+AGG + tig0022441:25294-25313 Msa1400330:intron 25.0%
! ATAATGCATTAGATAACAGA+GGG + tig0022441:25295-25314 Msa1400330:intron 25.0%
!!! ATGGAGGAAATTTTAAGTAT+TGG - tig0022441:25407-25426 None:intergenic 25.0%
!!! TATTTTGTTGTGTTTAATGG+AGG - tig0022441:25423-25442 None:intergenic 25.0%
!!! TTTGGAGTATATTTTTTGGA+TGG + tig0022441:25644-25663 Msa1400330:intron 25.0%
!!! GTATATTTTTTGGATGGATT+TGG + tig0022441:25650-25669 Msa1400330:intron 25.0%
!!! AGTCCTTTTTTTTTTTGGTT+TGG + tig0022441:25882-25901 Msa1400330:intron 25.0%
!!! ATTTTTTTAGTTTTTGGTGG+TGG - tig0022441:26296-26315 None:intergenic 25.0%
!!! AATCAACTTTGATTTTTCGT+GGG - tig0022441:26369-26388 None:intergenic 25.0%
!!! AAATCAACTTTGATTTTTCG+TGG - tig0022441:26370-26389 None:intergenic 25.0%
! CTAAAAAAAACAATTGTGTG+TGG - tig0022441:26434-26453 None:intergenic 25.0%
!!! CACACACAATTGTTTTTTTT+AGG + tig0022441:26432-26451 Msa1400330:intron 25.0%
! ACAATTAAGTGTGTGAATTT+CGG - tig0022441:26496-26515 None:intergenic 25.0%
! CAATATCGATAATGTTAAGT+TGG - tig0022441:26551-26570 None:intergenic 25.0%
!! TTATTTGAAATAGCCATTCA+AGG + tig0022441:26710-26729 Msa1400330:intron 25.0%
! TTTATTGTTACTATGTTGCT+GGG + tig0022441:26799-26818 Msa1400330:CDS 25.0%
! GAAATTAAATTCCTTTCTTG+GGG + tig0022441:27214-27233 Msa1400330:intron 25.0%
! TCTTAATACCTTCTAACTAA+AGG + tig0022441:27273-27292 Msa1400330:intron 25.0%
! CTTAATACCTTCTAACTAAA+GGG + tig0022441:27274-27293 Msa1400330:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - tig0022441:27544-27563 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - tig0022441:27545-27564 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + tig0022441:27867-27886 Msa1400330:intron 25.0%
!! TTTTCCCAATGACTTTAATT+AGG + tig0022441:28014-28033 Msa1400330:intron 25.0%
! TGAACCTAATTAAAGTCATT+GGG - tig0022441:28021-28040 None:intergenic 25.0%
! ATGAACCTAATTAAAGTCAT+TGG - tig0022441:28022-28041 None:intergenic 25.0%
! AAATGGAGAAATTTCATGAA+GGG + tig0022441:28296-28315 Msa1400330:CDS 25.0%
! CATCATTCATTATATGAAGT+AGG + tig0022441:28729-28748 Msa1400330:three_prime_UTR 25.0%
GAATTGTGATGCAAAATCAT+TGG + tig0022441:24320-24339 Msa1400330:CDS 30.0%
! AAGAGAAAAGAGTGTAAGAA+TGG + tig0022441:24365-24384 Msa1400330:CDS 30.0%
! AGAGAAAAGAGTGTAAGAAT+GGG + tig0022441:24366-24385 Msa1400330:CDS 30.0%
!! ATTGAAGGTGATTTTAGCAA+TGG + tig0022441:24539-24558 Msa1400330:CDS 30.0%
AATACCTAGGTAAAAAGTCT+TGG - tig0022441:24618-24637 None:intergenic 30.0%
! TCCATTTTCGTAAGTTTCAT+TGG + tig0022441:24748-24767 Msa1400330:intron 30.0%
! CCATTTTCGTAAGTTTCATT+GGG + tig0022441:24749-24768 Msa1400330:intron 30.0%
! CATTTTCGTAAGTTTCATTG+GGG + tig0022441:24750-24769 Msa1400330:intron 30.0%
! ATTTTCGTAAGTTTCATTGG+GGG + tig0022441:24751-24770 Msa1400330:intron 30.0%
TCTTCATTCTTGAATATGTG+TGG - tig0022441:24788-24807 None:intergenic 30.0%
ACTGAGACTATGAAAGTTAT+TGG + tig0022441:24981-25000 Msa1400330:intron 30.0%
CTGAGACTATGAAAGTTATT+GGG + tig0022441:24982-25001 Msa1400330:intron 30.0%
AATGAGTCAATGGAAGTTAA+AGG + tig0022441:25007-25026 Msa1400330:intron 30.0%
GTTAGGAAAGCAATTAAGTT+AGG + tig0022441:25537-25556 Msa1400330:intron 30.0%
ATTGAAGGGTCTATATCAAT+TGG - tig0022441:25569-25588 None:intergenic 30.0%
! TGGTTAGATCGTTAGTATTT+TGG + tig0022441:25626-25645 Msa1400330:intron 30.0%
CATAATATATGAAAGGTCTG+AGG + tig0022441:26258-26277 Msa1400330:intron 30.0%
!! AACGTCAAAGTTGATTTTAG+AGG + tig0022441:26327-26346 Msa1400330:intron 30.0%
ATTAATTTCACCCACGAAAA+AGG + tig0022441:26356-26375 Msa1400330:intron 30.0%
! TTTGTTATATGTAGACGAAG+TGG + tig0022441:26461-26480 Msa1400330:intron 30.0%
CAGCAACATAGTAACAATAA+AGG - tig0022441:26800-26819 None:intergenic 30.0%
CTTTATTGTTACTATGTTGC+TGG + tig0022441:26798-26817 Msa1400330:CDS 30.0%
!! TCAAAGATTAGTCTCATAGT+GGG - tig0022441:27119-27138 None:intergenic 30.0%
TATGAGACTAATCTTTGAGT+CGG + tig0022441:27121-27140 Msa1400330:intron 30.0%
TAAGAAACCAACATGATGTT+CGG - tig0022441:27258-27277 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - tig0022441:27927-27946 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - tig0022441:27926-27945 None:intergenic 30.0%
AAGTAAGGACTAAACTTACA+AGG - tig0022441:27467-27486 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + tig0022441:27607-27626 Msa1400330:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG + tig0022441:27866-27885 Msa1400330:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + tig0022441:27926-27945 Msa1400330:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + tig0022441:27927-27946 Msa1400330:intron 30.0%
CAAATGGAGAAATTTCATGA+AGG + tig0022441:28295-28314 Msa1400330:CDS 30.0%
TCATGAAGGGACAAATAAAA+AGG + tig0022441:28309-28328 Msa1400330:CDS 30.0%
CATGAAGGGACAAATAAAAA+GGG + tig0022441:28310-28329 Msa1400330:CDS 30.0%
TTCTTTGATGAAGCAGAAAA+GGG + tig0022441:28341-28360 Msa1400330:CDS 30.0%
GCATCATCTCATAAACAATT+TGG - tig0022441:28558-28577 None:intergenic 30.0%
GTTATGATTACATACATCTC+AGG + tig0022441:28674-28693 Msa1400330:three_prime_UTR 30.0%
! TATGAAGTAGGTTTTTCCTT+TGG + tig0022441:28741-28760 Msa1400330:three_prime_UTR 30.0%
TTGTGATGCAAAATCATTGG+TGG + tig0022441:24323-24342 Msa1400330:CDS 35.0%
TGTGATGCAAAATCATTGGT+GGG + tig0022441:24324-24343 Msa1400330:CDS 35.0%
!! TTGGTGGGTATTTCTAGAAT+TGG + tig0022441:24339-24358 Msa1400330:CDS 35.0%
!! TAAGAATGGGTTCTAGGATA+AGG + tig0022441:24379-24398 Msa1400330:CDS 35.0%
! TATGCCAAGACTTTTTACCT+AGG + tig0022441:24611-24630 Msa1400330:CDS 35.0%
CCCAATGAAACTTACGAAAA+TGG - tig0022441:24752-24771 None:intergenic 35.0%
TTATTGGGAGAATGAGTCAA+TGG + tig0022441:24997-25016 Msa1400330:intron 35.0%
TTTCATGGAGTGATTATGAG+AGG + tig0022441:25264-25283 Msa1400330:intron 35.0%
!! GAGTTGATAGAAAACGATGA+TGG - tig0022441:25343-25362 None:intergenic 35.0%
! AGATTGCCCATATAGCTTTT+CGG - tig0022441:25772-25791 None:intergenic 35.0%
AAAGCTATATGGGCAATCTA+TGG + tig0022441:25773-25792 Msa1400330:CDS 35.0%
TTTCATTGTGCATTGCAGTA+TGG + tig0022441:25914-25933 Msa1400330:intron 35.0%
AGAACTGATGAACTAGTAGA+TGG + tig0022441:25943-25962 Msa1400330:CDS 35.0%
GCAGCATCAAACATATCATA+TGG - tig0022441:26045-26064 None:intergenic 35.0%
TAAGTACCCTGTTGATATTC+AGG + tig0022441:26083-26102 Msa1400330:CDS 35.0%
! GAAGTACCTGAATATCAACA+GGG - tig0022441:26092-26111 None:intergenic 35.0%
! TGAAGTACCTGAATATCAAC+AGG - tig0022441:26093-26112 None:intergenic 35.0%
ACTAAGCATACACTTAGTTG+TGG - tig0022441:26195-26214 None:intergenic 35.0%
ATTAAGTGTGTGAATTTCGG+CGG - tig0022441:26493-26512 None:intergenic 35.0%
CACACTTAATTGTGAGATTC+CGG + tig0022441:26503-26522 Msa1400330:intron 35.0%
TCGATATTGTCTGTTGAGTT+AGG + tig0022441:26562-26581 Msa1400330:intron 35.0%
CATTCAAGGACATGATAGAA+GGG + tig0022441:26724-26743 Msa1400330:CDS 35.0%
TCTTATGAGTGTTCCTGTAA+TGG + tig0022441:26830-26849 Msa1400330:CDS 35.0%
CTTATGAGTGTTCCTGTAAT+GGG + tig0022441:26831-26850 Msa1400330:CDS 35.0%
GAGCATTTATAATGCTGCAT+TGG + tig0022441:26884-26903 Msa1400330:CDS 35.0%
ACCAATATACTCAGAGATGT+TGG + tig0022441:26930-26949 Msa1400330:CDS 35.0%
TCCAACATCTCTGAGTATAT+TGG - tig0022441:26934-26953 None:intergenic 35.0%
!! CTCAAAGATTAGTCTCATAG+TGG - tig0022441:27120-27139 None:intergenic 35.0%
AAGAAACCAACATGATGTTC+GGG - tig0022441:27257-27276 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + tig0022441:27911-27930 Msa1400330:intron 35.0%
! GATTATGATAGTGCTAGAAG+AGG + tig0022441:28194-28213 Msa1400330:intron 35.0%
GCATAATGTCTTCATCTGAT+AGG - tig0022441:28259-28278 None:intergenic 35.0%
GTGGAAAAGTAACAGACAAA+TGG + tig0022441:28279-28298 Msa1400330:CDS 35.0%
GTTCTTTGATGAAGCAGAAA+AGG + tig0022441:28340-28359 Msa1400330:CDS 35.0%
TTCACAAAAAGGGCTTATGT+TGG + tig0022441:28464-28483 Msa1400330:CDS 35.0%
! AGAGTGTAAGAATGGGTTCT+AGG + tig0022441:24373-24392 Msa1400330:CDS 40.0%
!! ATGGGTTCTAGGATAAGGTT+TGG + tig0022441:24384-24403 Msa1400330:intron 40.0%
! TCTAGGATAAGGTTTGGAAG+TGG + tig0022441:24390-24409 Msa1400330:intron 40.0%
CTAGGATAAGGTTTGGAAGT+GGG + tig0022441:24391-24410 Msa1400330:intron 40.0%
TAGGATAAGGTTTGGAAGTG+GGG + tig0022441:24392-24411 Msa1400330:intron 40.0%
!!! GAAGTAGTTTTGAAGCAAGC+AGG + tig0022441:24461-24480 Msa1400330:CDS 40.0%
!!! AGTTTTGAAGCAAGCAGGTT+TGG + tig0022441:24466-24485 Msa1400330:CDS 40.0%
TTTGGTGAGAGAAGATAGGA+GGG + tig0022441:24484-24503 Msa1400330:CDS 40.0%
AATTCTGCTTATGATCGGTG+TGG + tig0022441:24572-24591 Msa1400330:CDS 40.0%
AAGAACGCCGAAAAGCTATA+TGG + tig0022441:25762-25781 Msa1400330:CDS 40.0%
AGAACGCCGAAAAGCTATAT+GGG + tig0022441:25763-25782 Msa1400330:CDS 40.0%
! GTGTGATGTGTGAAGCATTT+GGG - tig0022441:25969-25988 None:intergenic 40.0%
!!! TTTTAGTTTTTGGTGGTGGC+CGG - tig0022441:26292-26311 None:intergenic 40.0%
! TGAGATTCCGGATTTGAGTT+CGG + tig0022441:26515-26534 Msa1400330:intron 40.0%
CCTTCTATCATGTCCTTGAA+TGG - tig0022441:26726-26745 None:intergenic 40.0%
CCATTCAAGGACATGATAGA+AGG + tig0022441:26723-26742 Msa1400330:CDS 40.0%
! TATAATGCTGCATTGGCACT+AGG + tig0022441:26891-26910 Msa1400330:CDS 40.0%
TTTCTAACCCACCGAAACTA+GGG + tig0022441:27040-27059 Msa1400330:intron 40.0%
TATAAGACCCTAGTTTCGGT+GGG - tig0022441:27050-27069 None:intergenic 40.0%
TGAGTTGTCCGCATAGATTA+AGG - tig0022441:27085-27104 None:intergenic 40.0%
ATTCCTGAAGTTCATCAGAG+AGG - tig0022441:27193-27212 None:intergenic 40.0%
AGAAACCAACATGATGTTCG+GGG - tig0022441:27256-27275 None:intergenic 40.0%
TGAGAAGCCCTTTAGTTAGA+AGG - tig0022441:27284-27303 None:intergenic 40.0%
! AAGGTTTTCATTCTCGCGAT+CGG + tig0022441:27354-27373 Msa1400330:intron 40.0%
TCAGATGAAGACATTATGCG+TGG + tig0022441:28260-28279 Msa1400330:CDS 40.0%
! GGGCAGCATTGTTGTTATAT+AGG + tig0022441:28402-28421 Msa1400330:CDS 40.0%
TTATCACTACCAGCTGCTTA+TGG + tig0022441:28503-28522 Msa1400330:CDS 40.0%
! GCTTATGGAACTGCACTTTT+AGG + tig0022441:28518-28537 Msa1400330:CDS 40.0%
AGGATAAGGTTTGGAAGTGG+GGG + tig0022441:24393-24412 Msa1400330:intron 45.0%
CAGAACCTTCAAGAAGTCAG+AGG + tig0022441:24427-24446 Msa1400330:CDS 45.0%
CTTCAAGAAGTCAGAGGAGA+GGG + tig0022441:24433-24452 Msa1400330:CDS 45.0%
!! CAGGTTTGGTGAGAGAAGAT+AGG + tig0022441:24480-24499 Msa1400330:CDS 45.0%
! GTTTGGTGAGAGAAGATAGG+AGG + tig0022441:24483-24502 Msa1400330:CDS 45.0%
TTGGTGAGAGAAGATAGGAG+GGG + tig0022441:24485-24504 Msa1400330:CDS 45.0%
ATCACTTAGACCATCCCCAA+TGG + tig0022441:25206-25225 Msa1400330:intron 45.0%
ACACTAAGACCTCACCATTG+GGG - tig0022441:25223-25242 None:intergenic 45.0%
GACACTAAGACCTCACCATT+GGG - tig0022441:25224-25243 None:intergenic 45.0%
AGACACTAAGACCTCACCAT+TGG - tig0022441:25225-25244 None:intergenic 45.0%
GTTAGGGGCAAGCAATTAAG+TGG + tig0022441:25602-25621 Msa1400330:intron 45.0%
! GGTGTGATGTGTGAAGCATT+TGG - tig0022441:25970-25989 None:intergenic 45.0%
! TGAGCTTAGCTCAGTTGGTA+AGG + tig0022441:26229-26248 Msa1400330:intron 45.0%
!!! TTTAGTTTTTGGTGGTGGCC+GGG - tig0022441:26291-26310 None:intergenic 45.0%
!! GTGGTCTTCTCCTTTTTCGT+GGG - tig0022441:26415-26434 None:intergenic 45.0%
!! TGTGGTCTTCTCCTTTTTCG+TGG - tig0022441:26416-26435 None:intergenic 45.0%
CTTTCGTCCGAACTCAAATC+CGG - tig0022441:26525-26544 None:intergenic 45.0%
GTCTGTTGAGTTAGGCCTTA+CGG + tig0022441:26570-26589 Msa1400330:intron 45.0%
AGACAATCGTGTAGTCCGTA+AGG - tig0022441:26588-26607 None:intergenic 45.0%
AGGACATGATAGAAGGGATG+AGG + tig0022441:26730-26749 Msa1400330:CDS 45.0%
CATGATAGAAGGGATGAGGA+TGG + tig0022441:26734-26753 Msa1400330:CDS 45.0%
TACTATGTTGCTGGGACAGT+AGG + tig0022441:26807-26826 Msa1400330:CDS 45.0%
!! TCAGGTGCTATTCCCATTAC+AGG - tig0022441:26846-26865 None:intergenic 45.0%
TCTGTAGAAGCCTTGGATTC+AGG - tig0022441:26864-26883 None:intergenic 45.0%
AATGCTCTCTGTAGAAGCCT+TGG - tig0022441:26871-26890 None:intergenic 45.0%
CTTTCTAACCCACCGAAACT+AGG + tig0022441:27039-27058 Msa1400330:intron 45.0%
GTATAAGACCCTAGTTTCGG+TGG - tig0022441:27051-27070 None:intergenic 45.0%
GCGGTATAAGACCCTAGTTT+CGG - tig0022441:27054-27073 None:intergenic 45.0%
! ATAGATTAAGGCGCCTATGG+CGG - tig0022441:27073-27092 None:intergenic 45.0%
CATAGGCGCCTTAATCTATG+CGG + tig0022441:27074-27093 Msa1400330:intron 45.0%
CTACCTCTCTGATGAACTTC+AGG + tig0022441:27187-27206 Msa1400330:intron 45.0%
GTAACACTCTTCCCCAAGAA+AGG - tig0022441:27228-27247 None:intergenic 45.0%
CTTGTGCTAGCTCATCTTGA+GGG - tig0022441:28232-28251 None:intergenic 45.0%
AGCTCAGTTCTGCTAGTAGA+TGG + tig0022441:28372-28391 Msa1400330:CDS 45.0%
!!! AAATTTTACTTATTATTTAT+TGG + tig0022441:25111-25130 Msa1400330:intron 5.0%
!! ATTAAATATATATTAGTAAT+TGG - tig0022441:25460-25479 None:intergenic 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - tig0022441:27511-27530 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - tig0022441:27512-27531 None:intergenic 5.0%
!! GATTTAATTATAAAAAAAAA+GGG - tig0022441:27970-27989 None:intergenic 5.0%
CCTCTCCTCTGACTTCTTGA+AGG - tig0022441:24435-24454 None:intergenic 50.0%
CCTTCAAGAAGTCAGAGGAG+AGG + tig0022441:24432-24451 Msa1400330:CDS 50.0%
TTAGACCATCCCCAATGGTG+AGG + tig0022441:25211-25230 Msa1400330:intron 50.0%
TAAGACCTCACCATTGGGGA+TGG - tig0022441:25219-25238 None:intergenic 50.0%
GGGGCAAGCAATTAAGTGGT+TGG + tig0022441:25606-25625 Msa1400330:intron 50.0%
TCTCGTGAGCTTAGCTCAGT+TGG + tig0022441:26224-26243 Msa1400330:intron 50.0%
! AAGGTCTGAGGTTCAAACCC+CGG + tig0022441:26270-26289 Msa1400330:intron 50.0%
!!! TTAGTTTTTGGTGGTGGCCG+GGG - tig0022441:26290-26309 None:intergenic 50.0%
GGGAATAGCACCTGAATCCA+AGG + tig0022441:26851-26870 Msa1400330:CDS 50.0%
! CTAGGGTCTTATACCGCCAT+AGG + tig0022441:27057-27076 Msa1400330:intron 50.0%
! CGCATAGATTAAGGCGCCTA+TGG - tig0022441:27076-27095 None:intergenic 50.0%
CAACATGATGTTCGGGGAGT+TGG - tig0022441:27250-27269 None:intergenic 50.0%
CAACTCCCCGAACATCATGT+TGG + tig0022441:27248-27267 Msa1400330:intron 50.0%
GCTTGTGCTAGCTCATCTTG+AGG - tig0022441:28233-28252 None:intergenic 50.0%
CAAGATGAGCTAGCACAAGC+TGG + tig0022441:28233-28252 Msa1400330:CDS 50.0%
TGCTAGTAGATGGCCTGTGT+GGG + tig0022441:28382-28401 Msa1400330:CDS 50.0%
AACAACAATGCTGCCCACAC+AGG - tig0022441:28398-28417 None:intergenic 50.0%
AGTGCAGTTCCATAAGCAGC+TGG - tig0022441:28515-28534 None:intergenic 50.0%
ACACATCACACCAGCAGCCT+TGG + tig0022441:25978-25997 Msa1400330:CDS 55.0%
ACCAGCAGCCTTGGACAGAT+GGG + tig0022441:25987-26006 Msa1400330:CDS 55.0%
CCTTGGACAGATGGGAGCAA+CGG + tig0022441:25995-26014 Msa1400330:CDS 55.0%
CTGCTAGTAGATGGCCTGTG+TGG + tig0022441:28381-28400 Msa1400330:CDS 55.0%
! GTTTGGAAGTGGGGGTGCAG+TGG + tig0022441:24401-24420 Msa1400330:intron 60.0%
CACCAGCAGCCTTGGACAGA+TGG + tig0022441:25986-26005 Msa1400330:CDS 60.0%
TCCCATCTGTCCAAGGCTGC+TGG - tig0022441:25991-26010 None:intergenic 60.0%
CCGTTGCTCCCATCTGTCCA+AGG - tig0022441:25998-26017 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0022441 gene 24297 28765 24297 ID=Msa1400330;Name=Msa1400330
tig0022441 mRNA 24297 28765 24297 ID=Msa1400330-mRNA-1;Parent=Msa1400330;Name=Msa1400330-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.8|0.66|1|1|1|6|191|381
tig0022441 exon 24297 24400 24297 ID=Msa1400330-mRNA-1:exon:17683;Parent=Msa1400330-mRNA-1
tig0022441 exon 24421 24632 24421 ID=Msa1400330-mRNA-1:exon:17684;Parent=Msa1400330-mRNA-1
tig0022441 exon 25744 25794 25744 ID=Msa1400330-mRNA-1:exon:17685;Parent=Msa1400330-mRNA-1
tig0022441 exon 25932 26104 25932 ID=Msa1400330-mRNA-1:exon:17686;Parent=Msa1400330-mRNA-1
tig0022441 exon 26723 26958 26723 ID=Msa1400330-mRNA-1:exon:17687;Parent=Msa1400330-mRNA-1
tig0022441 exon 28205 28765 28205 ID=Msa1400330-mRNA-1:exon:17688;Parent=Msa1400330-mRNA-1
tig0022441 CDS 24297 24400 24297 ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441 CDS 24421 24632 24421 ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441 CDS 25744 25794 25744 ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441 CDS 25932 26104 25932 ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441 CDS 26723 26958 26723 ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441 CDS 28205 28574 28205 ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441 three_prime_UTR 28575 28765 28575 ID=Msa1400330-mRNA-1:three_prime_utr;Parent=Msa1400330-mRNA-1
Gene Sequence

>Msa1400330

ATGTCTAGTATTGTTGTTAGGGTGAATTGTGATGCAAAATCATTGGTGGGTATTTCTAGAATTGGAAGAAGAGAAAAGAGTGTAAGAATGGGTTCTAGGATAAGTGGTAGCAGAACCTTCAAGAAGTCAGAGGAGAGGGTGTATGAAGTAGTTTTGAAGCAAGCAGGTTTGGTGAGAGAAGATAGGAGGGGTGCAAATATAGAATTTGATTTTGAGAAAACAATTGAAGGTGATTTTAGCAATGGAGATTTATTGAATTCTGCTTATGATCGGTGTGGTGAAGTTTGTGCTGAATATGCCAAGACTTTTTACCTAGGTACACAATTGATGACACAAGAACGCCGAAAAGCTATATGGGCAATCTATGTATGGTGTAGAAGAACTGATGAACTAGTAGATGGCCCAAATGCTTCACACATCACACCAGCAGCCTTGGACAGATGGGAGCAACGGTTAACTGATGTTTTTGAATGTCGACCATATGATATGTTTGATGCTGCTCTCTCACACACTGTCTCTAAGTACCCTGTTGATATTCAGCCATTCAAGGACATGATAGAAGGGATGAGGATGGATTTGAGAAAGTCAAGATACAACAACTTTGATGAGCTCTACCTTTATTGTTACTATGTTGCTGGGACAGTAGGTCTTATGAGTGTTCCTGTAATGGGAATAGCACCTGAATCCAAGGCTTCTACAGAGAGCATTTATAATGCTGCATTGGCACTAGGCATTGCAAATCAACTCACCAATATACTCAGAGATGTTGGAGAAGATGCTAGAAGAGGAAGAGTGTATCTCCCTCAAGATGAGCTAGCACAAGCTGGCCTATCAGATGAAGACATTATGCGTGGAAAAGTAACAGACAAATGGAGAAATTTCATGAAGGGACAAATAAAAAGGGCAAGAATGTTCTTTGATGAAGCAGAAAAGGGTGTCTCAGAGCTCAGTTCTGCTAGTAGATGGCCTGTGTGGGCAGCATTGTTGTTATATAGGCAGATATTAGATTCTATTGAAGCCAATGATTATAATAACTTCACAAAAAGGGCTTATGTTGGAAAAGTCAATAAGCTATTATCACTACCAGCTGCTTATGGAACTGCACTTTTAGGTCCTAAAAAGTTAACCAAATTGTTTATGAGATGA

Protein sequence

>Msa1400330

MSSIVVRVNCDAKSLVGISRIGRREKSVRMGSRISGSRTFKKSEERVYEVVLKQAGLVREDRRGANIEFDFEKTIEGDFSNGDLLNSAYDRCGEVCAEYAKTFYLGTQLMTQERRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEQRLTDVFECRPYDMFDAALSHTVSKYPVDIQPFKDMIEGMRMDLRKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESIYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIMRGKVTDKWRNFMKGQIKRARMFFDEAEKGVSELSSASRWPVWAALLLYRQILDSIEANDYNNFTKRAYVGKVNKLLSLPAAYGTALLGPKKLTKLFMR*