AlfalfaGEDB | Msa1400330

M. sativa cultivar zhongmu-4 / Msa1400330

KEGG: K02291
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF00494.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400330	AIT98180.1	96.134	388	8	2	1	381	1	388	0.0	759

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400330	sp\|Q9SSU8\|PSY_DAUCA	72.877	365	88	1	19	372	30	394	0.0	554

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400330	A0A097KXR7	96.134	388	8	2	1	381	1	388	0.0	759

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1400330	0.812036	5.187238e-51	-8.615850e-47
Msa0005500	Msa1400330	0.804786	1.827569e-49	-8.615850e-47
Msa0016830	Msa1400330	0.824220	9.081153e-54	-8.615850e-47
Msa0025060	Msa1400330	0.806734	7.124446e-50	-8.615850e-47
Msa0028610	Msa1400330	0.854842	9.401295e-62	-8.615850e-47
Msa0030710	Msa1400330	0.882065	1.423800e-70	-8.615850e-47
Msa0034590	Msa1400330	0.813098	3.039313e-51	-8.615850e-47
Msa0034800	Msa1400330	0.844446	7.520617e-59	-8.615850e-47
Msa0035090	Msa1400330	0.824343	8.498172e-54	-8.615850e-47
Msa0037110	Msa1400330	0.822376	2.448523e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1400330	MtrunA17_Chr5g0442671	92.784	388	21	2	1	381	1	388	0.0	741
Msa1400330	MtrunA17_Chr3g0095661	79.146	398	63	5	1	381	1	395	0.0	629
Msa1400330	MtrunA17_Chr5g0433601	76.276	333	75	2	43	374	100	429	0.0	534
Msa1400330	MtrunA17_Chr3g0121311	64.634	328	108	2	46	373	57	376	4.83e-156	444

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1400330	AT5G17230.2	79.217	332	62	2	43	370	85	413	550
Msa1400330	AT5G17230.1	79.217	332	62	2	43	370	85	413	550
Msa1400330	AT5G17230.4	79.217	332	62	2	43	370	85	413	550
Msa1400330	AT5G17230.3	75.793	347	62	3	43	370	85	428	541

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Find 82 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTATATGGGCAATCTA+TGG	0.391917	tig0022441:+25773	Msa1400330:CDS
AAATGGAGAAATTTCATGAA+GGG	0.583483	tig0022441:+28296	Msa1400330:CDS
AACAACAATGCTGCCCACAC+AGG	0.638058	tig0022441:-28395	None:intergenic
AAGAACGCCGAAAAGCTATA+TGG	0.335633	tig0022441:+25762	Msa1400330:CDS
AAGAGAAAAGAGTGTAAGAA+TGG	0.370228	tig0022441:+24365	Msa1400330:CDS
AATGCTCTCTGTAGAAGCCT+TGG	0.487506	tig0022441:-26868	None:intergenic
AATTCTGCTTATGATCGGTG+TGG	0.729934	tig0022441:+24572	Msa1400330:CDS
ACACATCACACCAGCAGCCT+TGG	0.504549	tig0022441:+25978	Msa1400330:CDS
ACCAATATACTCAGAGATGT+TGG	0.528223	tig0022441:+26930	Msa1400330:CDS
ACCAGCAGCCTTGGACAGAT+GGG	0.533995	tig0022441:+25987	Msa1400330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAATTGTGATGCAAAATCAT+TGG	+	tig0022441:24320-24339	Msa1400330:CDS	30.0%
AATACCTAGGTAAAAAGTCT+TGG	-	tig0022441:24618-24637	None:intergenic	30.0%
TCTTCATTCTTGAATATGTG+TGG	-	tig0022441:24788-24807	None:intergenic	30.0%
ACTGAGACTATGAAAGTTAT+TGG	+	tig0022441:24981-25000	Msa1400330:intron	30.0%
CTGAGACTATGAAAGTTATT+GGG	+	tig0022441:24982-25001	Msa1400330:intron	30.0%
AATGAGTCAATGGAAGTTAA+AGG	+	tig0022441:25007-25026	Msa1400330:intron	30.0%
GTTAGGAAAGCAATTAAGTT+AGG	+	tig0022441:25537-25556	Msa1400330:intron	30.0%
ATTGAAGGGTCTATATCAAT+TGG	-	tig0022441:25569-25588	None:intergenic	30.0%
CATAATATATGAAAGGTCTG+AGG	+	tig0022441:26258-26277	Msa1400330:intron	30.0%
ATTAATTTCACCCACGAAAA+AGG	+	tig0022441:26356-26375	Msa1400330:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022441	gene	24297	28765	24297	ID=Msa1400330;Name=Msa1400330
tig0022441	mRNA	24297	28765	24297	ID=Msa1400330-mRNA-1;Parent=Msa1400330;Name=Msa1400330-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.8\|0.66\|1\|1\|1\|6\|191\|381
tig0022441	exon	24297	24400	24297	ID=Msa1400330-mRNA-1:exon:17683;Parent=Msa1400330-mRNA-1
tig0022441	exon	24421	24632	24421	ID=Msa1400330-mRNA-1:exon:17684;Parent=Msa1400330-mRNA-1
tig0022441	exon	25744	25794	25744	ID=Msa1400330-mRNA-1:exon:17685;Parent=Msa1400330-mRNA-1
tig0022441	exon	25932	26104	25932	ID=Msa1400330-mRNA-1:exon:17686;Parent=Msa1400330-mRNA-1
tig0022441	exon	26723	26958	26723	ID=Msa1400330-mRNA-1:exon:17687;Parent=Msa1400330-mRNA-1
tig0022441	exon	28205	28765	28205	ID=Msa1400330-mRNA-1:exon:17688;Parent=Msa1400330-mRNA-1
tig0022441	CDS	24297	24400	24297	ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441	CDS	24421	24632	24421	ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441	CDS	25744	25794	25744	ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441	CDS	25932	26104	25932	ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441	CDS	26723	26958	26723	ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441	CDS	28205	28574	28205	ID=Msa1400330-mRNA-1:cds;Parent=Msa1400330-mRNA-1
tig0022441	three_prime_UTR	28575	28765	28575	ID=Msa1400330-mRNA-1:three_prime_utr;Parent=Msa1400330-mRNA-1

Gene Sequence

>Msa1400330

ATGTCTAGTATTGTTGTTAGGGTGAATTGTGATGCAAAATCATTGGTGGGTATTTCTAGAATTGGAAGAAGAGAAAAGAGTGTAAGAATGGGTTCTAGGATAAGTGGTAGCAGAACCTTCAAGAAGTCAGAGGAGAGGGTGTATGAAGTAGTTTTGAAGCAAGCAGGTTTGGTGAGAGAAGATAGGAGGGGTGCAAATATAGAATTTGATTTTGAGAAAACAATTGAAGGTGATTTTAGCAATGGAGATTTATTGAATTCTGCTTATGATCGGTGTGGTGAAGTTTGTGCTGAATATGCCAAGACTTTTTACCTAGGTACACAATTGATGACACAAGAACGCCGAAAAGCTATATGGGCAATCTATGTATGGTGTAGAAGAACTGATGAACTAGTAGATGGCCCAAATGCTTCACACATCACACCAGCAGCCTTGGACAGATGGGAGCAACGGTTAACTGATGTTTTTGAATGTCGACCATATGATATGTTTGATGCTGCTCTCTCACACACTGTCTCTAAGTACCCTGTTGATATTCAGCCATTCAAGGACATGATAGAAGGGATGAGGATGGATTTGAGAAAGTCAAGATACAACAACTTTGATGAGCTCTACCTTTATTGTTACTATGTTGCTGGGACAGTAGGTCTTATGAGTGTTCCTGTAATGGGAATAGCACCTGAATCCAAGGCTTCTACAGAGAGCATTTATAATGCTGCATTGGCACTAGGCATTGCAAATCAACTCACCAATATACTCAGAGATGTTGGAGAAGATGCTAGAAGAGGAAGAGTGTATCTCCCTCAAGATGAGCTAGCACAAGCTGGCCTATCAGATGAAGACATTATGCGTGGAAAAGTAACAGACAAATGGAGAAATTTCATGAAGGGACAAATAAAAAGGGCAAGAATGTTCTTTGATGAAGCAGAAAAGGGTGTCTCAGAGCTCAGTTCTGCTAGTAGATGGCCTGTGTGGGCAGCATTGTTGTTATATAGGCAGATATTAGATTCTATTGAAGCCAATGATTATAATAACTTCACAAAAAGGGCTTATGTTGGAAAAGTCAATAAGCTATTATCACTACCAGCTGCTTATGGAACTGCACTTTTAGGTCCTAAAAAGTTAACCAAATTGTTTATGAGATGA

Protein sequence

>Msa1400330

MSSIVVRVNCDAKSLVGISRIGRREKSVRMGSRISGSRTFKKSEERVYEVVLKQAGLVREDRRGANIEFDFEKTIEGDFSNGDLLNSAYDRCGEVCAEYAKTFYLGTQLMTQERRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEQRLTDVFECRPYDMFDAALSHTVSKYPVDIQPFKDMIEGMRMDLRKSRYNNFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESIYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELAQAGLSDEDIMRGKVTDKWRNFMKGQIKRARMFFDEAEKGVSELSSASRWPVWAALLLYRQILDSIEANDYNNFTKRAYVGKVNKLLSLPAAYGTALLGPKKLTKLFMR*