AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1272210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272210 MtrunA17_Chr8g0336951 94.194 465 27 0 1 465 1 465 0.0 907
Msa1272210 MtrunA17_Chr2g0297041 37.113 485 266 14 1 464 1 467 1.84e-80 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272210 AT2G44640.1 52.532 474 193 8 1 465 1 451 1.50e-154 446
Msa1272210 AT3G06960.1 35.425 494 273 13 1 464 1 478 2.81e-78 252
Msa1272210 AT3G06960.2 38.158 304 176 6 1 294 1 302 6.15e-55 187

Find 129 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTGTGCTTCCTGGATT+TGG 0.253326 8_3:-5699917 Msa1272210:CDS
CAGGTAGCTCCTGTGCTTCC+TGG 0.270782 8_3:-5699923 Msa1272210:CDS
TTGCTTGGTATTCACCAAAA+AGG 0.275530 8_3:-5698797 Msa1272210:CDS
CGAGTCTATATCAGTTGATT+TGG 0.278646 8_3:-5701384 Msa1272210:CDS
CAGCCATTGATTCATCATTC+TGG 0.279261 8_3:-5704196 Msa1272210:CDS
CAAAGAATCAATCGAAATTC+TGG 0.282288 8_3:+5698914 None:intergenic
CCTTCAACATCTGTGTTGTT+TGG 0.283212 8_3:-5701834 Msa1272210:CDS
GGAAGATTCACAAAGAAGTT+TGG 0.289114 8_3:-5699783 Msa1272210:CDS
GAAGATTCACAAAGAAGTTT+GGG 0.296464 8_3:-5699782 Msa1272210:CDS
GTACCTCATGCAGCAGTATC+TGG 0.307606 8_3:-5701137 Msa1272210:CDS
GACTCCACATCGCTAGCTTT+AGG 0.309022 8_3:+5698831 None:intergenic
ATCTGTGTTGTTTGGTTTAG+AGG 0.310418 8_3:-5701826 Msa1272210:CDS
TCCACATTACCACGGACTTA+TGG 0.315616 8_3:-5701159 Msa1272210:CDS
ACTCCACATCGCTAGCTTTA+GGG 0.317436 8_3:+5698832 None:intergenic
GGCATCCCTTGCAGCTCGTC+GGG 0.334310 8_3:-5701363 Msa1272210:CDS
GCAGCAGTATCTGGAATTAT+TGG 0.335779 8_3:-5701128 Msa1272210:intron
TTTCTTCTCTTTGACACAGC+TGG 0.345108 8_3:+5699861 None:intergenic
AAAGGAACCATACTCCTTCT+TGG 0.350882 8_3:+5704004 None:intergenic
TTGACCACAAAGGAAGATAC+TGG 0.352098 8_3:-5701415 Msa1272210:CDS
CGGGGATTGCGATACCGCTT+TGG 0.356101 8_3:-5701344 Msa1272210:CDS
ATTGAAAATTTAATTGCAAC+AGG 0.372612 8_3:-5698503 Msa1272210:three_prime_UTR
TAACTTAATCTTTCAGCAAC+AGG 0.381264 8_3:-5699634 Msa1272210:intron
CGGAAAGAACCTTATTGATT+CGG 0.383096 8_3:-5699892 Msa1272210:CDS
TATAGGTGGCTTGCAGCAAC+TGG 0.383507 8_3:-5702008 Msa1272210:intron
GATCCTCTCCCGAATCAATA+AGG 0.384097 8_3:+5699883 None:intergenic
GGGGATTGCGATACCGCTTT+GGG 0.386728 8_3:-5701343 Msa1272210:CDS
GGTTGGGCCAAGTTTGTTCC+TGG 0.387086 8_3:-5704140 Msa1272210:CDS
CCTTCTCCCAAGAAGGAGTA+TGG 0.388810 8_3:-5704011 Msa1272210:CDS
ACTGAAGCGTCAAGAGGAAT+AGG 0.389532 8_3:+5704113 None:intergenic
TTTCGATTGATTCTTTGAAC+AGG 0.390812 8_3:-5698908 Msa1272210:CDS
GGAAAGAACCTTATTGATTC+GGG 0.392979 8_3:-5699891 Msa1272210:CDS
AATGTCTAATTGTAGGTTGC+AGG 0.396953 8_3:-5698960 Msa1272210:intron
CTAGATATATCTTCAGCTTC+CGG 0.399624 8_3:-5699735 Msa1272210:CDS
ACTTAAGAGTTATGTTTAGT+TGG 0.406432 8_3:-5698605 Msa1272210:three_prime_UTR
AAAGCTAGCGATGTGGAGTC+TGG 0.420043 8_3:-5698828 Msa1272210:CDS
AGCCATTGATTCATCATTCT+GGG 0.424530 8_3:-5704195 Msa1272210:CDS
TCCACAAAACCTCGATGGTT+GGG 0.430228 8_3:-5704156 Msa1272210:CDS
CAACTGGACAATTCCGTCCT+AGG 0.440660 8_3:-5701992 Msa1272210:CDS
GGAAAATGATGAGTGATATG+AGG 0.441130 8_3:+5704059 None:intergenic
TCACTTCTCCTTGATTTCAC+TGG 0.444371 8_3:-5703972 Msa1272210:CDS
GAATCTGCTCGAAATACAAC+TGG 0.446191 8_3:+5698936 None:intergenic
ATTCAATCTCTCGACAGTTA+AGG 0.452262 8_3:-5701925 Msa1272210:CDS
AGAAGTTTGGGGACTTAACC+CGG 0.462716 8_3:-5699770 Msa1272210:CDS
CATCCCAGTATCTTCCTTTG+TGG 0.468934 8_3:+5701411 None:intergenic
GCTGCAAATGAAATCTTCAA+TGG 0.468982 8_3:+5698872 None:intergenic
GAGAAGTGACTGAAATGAAA+AGG 0.473027 8_3:+5703986 None:intergenic
AAGGAACCATACTCCTTCTT+GGG 0.477484 8_3:+5704005 None:intergenic
CTCCACAAAACCTCGATGGT+TGG 0.478725 8_3:-5704157 Msa1272210:CDS
GTCCCAGAATGATGAATCAA+TGG 0.487363 8_3:+5704193 None:intergenic
CTTGCGAAGAAAATTCTGAA+TGG 0.488339 8_3:-5699711 Msa1272210:CDS
CTCAGCTCCTTCTCCCAAGA+AGG 0.491627 8_3:-5704018 Msa1272210:CDS
CCAAACAACACAGATGTTGA+AGG 0.492018 8_3:+5701834 None:intergenic
GTTCTTTCCGTTCCAAATCC+AGG 0.492275 8_3:+5699905 None:intergenic
TGGCATCCCTTGCAGCTCGT+CGG 0.492674 8_3:-5701364 Msa1272210:CDS
CTGAAAGATTAAGTTAAGCC+GGG 0.493014 8_3:+5699641 None:intergenic
ACACCGCTGTCTCTACTGCC+AGG 0.495012 8_3:-5701269 Msa1272210:CDS
ATCATAAGTAACAGCCGCCT+TGG 0.496861 8_3:+5701238 None:intergenic
ATGATAAGATCAAGTACCTC+TGG 0.501416 8_3:-5701220 Msa1272210:CDS
AACGATGACCAGTGAAATCA+AGG 0.503727 8_3:+5703964 None:intergenic
GAAAATGATGAGTGATATGA+GGG 0.506868 8_3:+5704060 None:intergenic
GCTGAAAGATTAAGTTAAGC+CGG 0.510159 8_3:+5699640 None:intergenic
CACAACATCATCATCATCAA+TGG 0.511600 8_3:-5704231 Msa1272210:exon
CTGAAGCGTCAAGAGGAATA+GGG 0.513543 8_3:+5704114 None:intergenic
GATTCTTTGAACAGGAAACA+TGG 0.515337 8_3:-5698900 Msa1272210:CDS
TCTGTGTTGTTTGGTTTAGA+GGG 0.522771 8_3:-5701825 Msa1272210:CDS
CAATCCCCGACGAGCTGCAA+GGG 0.523970 8_3:+5701358 None:intergenic
TGATATGAGGGAGTTGTTGA+TGG 0.527979 8_3:+5704072 None:intergenic
TAAGAACAACGGTAGTCCTC+AGG 0.529738 8_3:-5701315 Msa1272210:CDS
TTGGGAGAAGGAGCTGAGGA+AGG 0.531214 8_3:+5704023 None:intergenic
ATTCTAAAATGAACGATGCA+TGG 0.531505 8_3:+5698661 None:intergenic
TATCTAGACGAGCATCTACC+CGG 0.531804 8_3:+5699751 None:intergenic
GCCGCCTTGGCACATAACCC+TGG 0.538068 8_3:+5701251 None:intergenic
CCATACTCCTTCTTGGGAGA+AGG 0.543963 8_3:+5704011 None:intergenic
AGGGTCACCAGGAACAAACT+TGG 0.547546 8_3:+5704133 None:intergenic
TTGATTTCACTGGTCATCGT+TGG 0.548954 8_3:-5703962 Msa1272210:intron
ACCATAAGTCCGTGGTAATG+TGG 0.556100 8_3:+5701158 None:intergenic
CAAATCAACTGATATAGACT+CGG 0.556932 8_3:+5701385 None:intergenic
GAACCTTATTGATTCGGGAG+AGG 0.559230 8_3:-5699886 Msa1272210:CDS
GATTAAGTTAAGCCGGGGTG+AGG 0.564997 8_3:+5699647 None:intergenic
TCCTCTCCACAAAACCTCGA+TGG 0.565773 8_3:-5704161 Msa1272210:CDS
ATTCTTTGAACAGGAAACAT+GGG 0.573586 8_3:-5698899 Msa1272210:CDS
GTTCCAAATCCAGGAAGCAC+AGG 0.585341 8_3:+5699914 None:intergenic
TGATGATGATGATGTTGTGC+GGG 0.585517 8_3:+5704235 None:intergenic
TGTGCTTCCTGGATTTGGAA+CGG 0.585569 8_3:-5699912 Msa1272210:CDS
TTGTTTGGTTTAGAGGGCCA+TGG 0.586865 8_3:-5701819 Msa1272210:CDS
CATCATCATCATCAATGGCT+AGG 0.589680 8_3:-5704226 Msa1272210:exon
TCAAGAGGAATAGGGTCACC+AGG 0.593510 8_3:+5704122 None:intergenic
ATCTTACAGTGGAGGCAGCA+TGG 0.600522 8_3:-5701451 Msa1272210:CDS
GCAATCCCCGACGAGCTGCA+AGG 0.603550 8_3:+5701357 None:intergenic
GTTTGCTATACTTTGCAGCA+AGG 0.605503 8_3:-5699804 Msa1272210:CDS
ACTGCCAGGGTTATGTGCCA+AGG 0.607980 8_3:-5701255 Msa1272210:CDS
TGGGAGAAGGAGCTGAGGAA+GGG 0.611872 8_3:+5704024 None:intergenic
GCATCCCTTGCAGCTCGTCG+GGG 0.611975 8_3:-5701362 Msa1272210:CDS
TGAAGTGAAGTGAAGTGAAG+AGG 0.614792 8_3:+5704283 None:intergenic
CACCGCTGTCTCTACTGCCA+GGG 0.614848 8_3:-5701268 Msa1272210:CDS
CTGGAGAAACACGGAGACTG+AGG 0.616034 8_3:-5701201 Msa1272210:CDS
CAGTCTCCGTGTTTCTCCAG+AGG 0.618270 8_3:+5701204 None:intergenic
CTGGAAACTGAAGCGTCAAG+AGG 0.619867 8_3:+5704107 None:intergenic
TTAAGCCGGGGTGAGGCTGA+CGG 0.619931 8_3:+5699654 None:intergenic
GAAGTTTGGGGACTTAACCC+GGG 0.623442 8_3:-5699769 Msa1272210:CDS
GAGGAAGGGATAATGCCAAA+GGG 0.625924 8_3:+5704038 None:intergenic
TGATCACGATCTTACAGTGG+AGG 0.626341 8_3:-5701459 Msa1272210:CDS
TGAGGAAGGGATAATGCCAA+AGG 0.630223 8_3:+5704037 None:intergenic
TTGATGGCGATAGAGTCTGC+TGG 0.631814 8_3:+5704088 None:intergenic
GCCAGGGTTATGTGCCAAGG+CGG 0.636658 8_3:-5701252 Msa1272210:CDS
CTTCTTGGGAGAAGGAGCTG+AGG 0.640737 8_3:+5704019 None:intergenic
GGCTTGTTTCCACATTACCA+CGG 0.643480 8_3:-5701167 Msa1272210:CDS
AACAACCGTCAGCCTCACCC+CGG 0.648424 8_3:-5699659 Msa1272210:CDS
AAGATTCACAAAGAAGTTTG+GGG 0.651005 8_3:-5699781 Msa1272210:CDS
ATTCCAGATACTGCTGCATG+AGG 0.653346 8_3:+5701134 None:intergenic
TTCTGATCACGATCTTACAG+TGG 0.653407 8_3:-5701462 Msa1272210:CDS
ATCTAGACGAGCATCTACCC+GGG 0.654861 8_3:+5699752 None:intergenic
TGAAAGATTAAGTTAAGCCG+GGG 0.659744 8_3:+5699642 None:intergenic
GAGAAACACGGAGACTGAGG+AGG 0.661282 8_3:-5701198 Msa1272210:CDS
CAAGTACCTCTGGAGAAACA+CGG 0.661736 8_3:-5701210 Msa1272210:CDS
AAATCAACTGATATAGACTC+GGG 0.662894 8_3:+5701386 None:intergenic
CAGTTGTTTGTTGACCACAA+AGG 0.665261 8_3:-5701425 Msa1272210:CDS
TGACCACAAAGGAAGATACT+GGG 0.665611 8_3:-5701414 Msa1272210:CDS
TCAGTTGCATTAGTAGCCTG+AGG 0.666364 8_3:+5701299 None:intergenic
TGTTCTTATGCATCCCAAAG+CGG 0.671112 8_3:+5701330 None:intergenic
TGACCCTAAAGCTAGCGATG+TGG 0.680404 8_3:-5698835 Msa1272210:CDS
TTGATGATGATGATGTTGTG+CGG 0.685767 8_3:+5704234 None:intergenic
AACCCTGGCAGTAGAGACAG+CGG 0.710115 8_3:+5701266 None:intergenic
CATGAGGTACCATAAGTCCG+TGG 0.716130 8_3:+5701150 None:intergenic
TTTGGGATGCATAAGAACAA+CGG 0.717493 8_3:-5701326 Msa1272210:CDS
GAGACTGAGGAGGAATACGA+AGG 0.720894 8_3:-5701188 Msa1272210:CDS
TTGTGGTCAACAAACAACTG+AGG 0.728374 8_3:+5701428 None:intergenic
CAAACTTGGCCCAACCATCG+AGG 0.733200 8_3:+5704147 None:intergenic
AGGAGATAAAGCAAACTGTG+AGG 0.736725 8_3:+5701854 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTGGATTATTTTTTT+TGG - chr8_3:5699724-5699743 Msa1272210:CDS 10.0%
!!! AAAATTGGATTATTTTTTTT+GGG - chr8_3:5699725-5699744 Msa1272210:CDS 10.0%
!!! TAATTATTTTTGTTTTGTTA+TGG - chr8_3:5702823-5702842 Msa1272210:intron 10.0%
!!! AAAGAAGCATATAAAAAAAA+GGG + chr8_3:5698945-5698964 None:intergenic 15.0%
!!! TAAAGAAGCATATAAAAAAA+AGG + chr8_3:5698946-5698965 None:intergenic 15.0%
!!! TTATATGCTTCTTTAAAAAT+TGG - chr8_3:5698951-5698970 Msa1272210:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr8_3:5699281-5699300 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr8_3:5699305-5699324 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr8_3:5699304-5699323 Msa1272210:intron 15.0%
!! TGTATAATTTGAATTTGAAT+GGG - chr8_3:5699943-5699962 Msa1272210:intron 15.0%
!! TCATTTCTTGAATAAAAAAT+AGG - chr8_3:5700083-5700102 Msa1272210:intron 15.0%
!! TTATCTTCTTTAATAGTATA+AGG - chr8_3:5700266-5700285 Msa1272210:intron 15.0%
!!! TTTTATAGATTACATAAACA+TGG + chr8_3:5700700-5700719 None:intergenic 15.0%
!!! ATATTTTTCAATTTCAGAAA+AGG + chr8_3:5701162-5701181 None:intergenic 15.0%
!! TTTCATTTACTATTTGATTA+AGG + chr8_3:5702011-5702030 None:intergenic 15.0%
!! AATCAAATAGTAAATGAAAT+AGG - chr8_3:5702012-5702031 Msa1272210:intron 15.0%
!!! ATTTATTGTGTTGATTTTTT+TGG - chr8_3:5702119-5702138 Msa1272210:intron 15.0%
!!! ACATTTTTTTTATAAAAGAG+AGG - chr8_3:5702321-5702340 Msa1272210:intron 15.0%
!!! CATTTTTTTTATAAAAGAGA+GGG - chr8_3:5702322-5702341 Msa1272210:intron 15.0%
!! TTAATTCAATATACTGAAAT+TGG - chr8_3:5703713-5703732 Msa1272210:intron 15.0%
!! GAAATGAAAATACAATATTA+AGG - chr8_3:5703788-5703807 Msa1272210:intron 15.0%
!!! AAAAATAACAAAAGTGTAAT+TGG + chr8_3:5704224-5704243 None:intergenic 15.0%
!! AATGAAACTTTAGACAATTT+AGG - chr8_3:5699042-5699061 Msa1272210:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr8_3:5699218-5699237 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr8_3:5699295-5699314 Msa1272210:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr8_3:5699338-5699357 None:intergenic 20.0%
!! ATATTTATAAGTTAGTCCAA+CGG + chr8_3:5699479-5699498 None:intergenic 20.0%
!! AGAAAAAAATGTTAACAAAC+AGG - chr8_3:5699598-5699617 Msa1272210:intron 20.0%
!! TTATAAGCTATAAGCTTAAA+GGG - chr8_3:5699642-5699661 Msa1272210:CDS 20.0%
!!! TGTTATGCTTCTTTAAAAAT+TGG - chr8_3:5699710-5699729 Msa1272210:CDS 20.0%
!! TTTCAATTTCTTACTTTGAT+GGG - chr8_3:5699787-5699806 Msa1272210:CDS 20.0%
!! GTGTATAATTTGAATTTGAA+TGG - chr8_3:5699942-5699961 Msa1272210:intron 20.0%
!! TTTATTCAAGAAATGAGAAT+TGG + chr8_3:5700079-5700098 None:intergenic 20.0%
!!! TATGTTTTGATCATTAGTTT+CGG - chr8_3:5700233-5700252 Msa1272210:intron 20.0%
!!! GTTTCTTATTTCACTATATT+AGG - chr8_3:5700621-5700640 Msa1272210:intron 20.0%
!! ATGTAATCTATAAAACATCA+TGG - chr8_3:5700705-5700724 Msa1272210:intron 20.0%
!!! TTATTTTTCATTATCTGATG+TGG - chr8_3:5701052-5701071 Msa1272210:intron 20.0%
!! CAACTCATAATACTATAAAT+TGG - chr8_3:5701186-5701205 Msa1272210:CDS 20.0%
!!! TCTTTTTCATTTTTATGGTT+CGG - chr8_3:5701753-5701772 Msa1272210:intron 20.0%
!! AGAGAGAATAAAACATAAAA+GGG + chr8_3:5701831-5701850 None:intergenic 20.0%
!! AAGAGAGAATAAAACATAAA+AGG + chr8_3:5701832-5701851 None:intergenic 20.0%
!!! TCTTTTTTTGCTAGAATTAT+AGG - chr8_3:5701848-5701867 Msa1272210:CDS 20.0%
!! AATAAACTCTTATTGGATTA+AGG + chr8_3:5702278-5702297 None:intergenic 20.0%
!! TTAATCCAATAAGAGTTTAT+TGG - chr8_3:5702277-5702296 Msa1272210:intron 20.0%
!! TAATCCAATAAGAGTTTATT+GGG - chr8_3:5702278-5702297 Msa1272210:intron 20.0%
!!! AAGTTTTTTAAGAGTTTGTT+AGG - chr8_3:5702370-5702389 Msa1272210:intron 20.0%
!!! TAGATTTTGCTTAATTTTCA+GGG + chr8_3:5702620-5702639 None:intergenic 20.0%
!! TTATGGTTCATAATAAATTC+AGG - chr8_3:5702840-5702859 Msa1272210:intron 20.0%
!!! TTAAGTTGTTTATCCAAAAA+TGG + chr8_3:5703220-5703239 None:intergenic 20.0%
!!! GTAACTGTAAAGAATTTTTA+CGG - chr8_3:5703486-5703505 Msa1272210:intron 20.0%
!! CTATACTATTCAAATGAAAA+AGG - chr8_3:5703657-5703676 Msa1272210:intron 20.0%
!!! AAAAATCAACTAACTCATTT+TGG + chr8_3:5704148-5704167 None:intergenic 20.0%
!! ATTGAAAATTTAATTGCAAC+AGG - chr8_3:5704279-5704298 Msa1272210:five_prime_UTR 20.0%
!! TTTAATTTACTTGAGCATGA+TGG - chr8_3:5699017-5699036 Msa1272210:intron 25.0%
! TTATGGATAGTTAATAAGCT+AGG - chr8_3:5699082-5699101 Msa1272210:intron 25.0%
! ATAGTTAATAAGCTAGGTTA+TGG - chr8_3:5699088-5699107 Msa1272210:intron 25.0%
!! TGTTCAGAGTATTAATTGAA+GGG + chr8_3:5699252-5699271 None:intergenic 25.0%
!!! AAACGACACTCATTTTAAAA+CGG - chr8_3:5699387-5699406 Msa1272210:intron 25.0%
! CTGATTGAATTTGTAATGTT+TGG - chr8_3:5699444-5699463 Msa1272210:intron 25.0%
! TAAGCTCATATGACAAAAAA+AGG + chr8_3:5699625-5699644 None:intergenic 25.0%
! CTTATAAGCTATAAGCTTAA+AGG - chr8_3:5699641-5699660 Msa1272210:CDS 25.0%
!!! ATTGGATTATTTTTTTTGGG+TGG - chr8_3:5699728-5699747 Msa1272210:CDS 25.0%
!!! TTGGATTATTTTTTTTGGGT+GGG - chr8_3:5699729-5699748 Msa1272210:CDS 25.0%
! GTTTCAATTTCTTACTTTGA+TGG - chr8_3:5699786-5699805 Msa1272210:CDS 25.0%
! TTCAATTTCTTACTTTGATG+GGG - chr8_3:5699788-5699807 Msa1272210:CDS 25.0%
!!! ATGATGTTTGATTTTGTTGT+TGG - chr8_3:5699895-5699914 Msa1272210:CDS 25.0%
!!! TGTTTAGCTTTTCATTCATT+TGG + chr8_3:5699970-5699989 None:intergenic 25.0%
!! TTATGTTGATAGAAAAGAAG+AGG - chr8_3:5699995-5700014 Msa1272210:intron 25.0%
!! TATGTTGATAGAAAAGAAGA+GGG - chr8_3:5699996-5700015 Msa1272210:intron 25.0%
! GAATAAAAAATAGGAGTTGT+TGG - chr8_3:5700092-5700111 Msa1272210:intron 25.0%
! AGATATCGTTCTTCATATAT+TGG - chr8_3:5700306-5700325 Msa1272210:intron 25.0%
! ACATTGTCTCATATTATTAC+TGG - chr8_3:5700461-5700480 Msa1272210:intron 25.0%
!! ATATCAACTATCATTTTCCT+AGG + chr8_3:5700810-5700829 None:intergenic 25.0%
!!! ACAAGTCACTTTTTTCATAT+GGG - chr8_3:5700901-5700920 Msa1272210:intron 25.0%
!!! TCAACATTTTGAGAGTATAA+AGG + chr8_3:5701099-5701118 None:intergenic 25.0%
!!! ACCACTCTTTTTCATTTTTA+TGG - chr8_3:5701748-5701767 Msa1272210:intron 25.0%
! ACCATAAAAATGAAAAAGAG+TGG + chr8_3:5701752-5701771 None:intergenic 25.0%
! TTTGCTAGAATTATAGGATT+AGG - chr8_3:5701854-5701873 Msa1272210:CDS 25.0%
! ATAGGATTAGGTAAAGAAAA+AGG - chr8_3:5701866-5701885 Msa1272210:CDS 25.0%
!! TATCCTTTTTATCATAGTAC+CGG - chr8_3:5701976-5701995 Msa1272210:CDS 25.0%
! TTGATTAAGGATTAAAAGTC+CGG + chr8_3:5701998-5702017 None:intergenic 25.0%
! AAATATGAAAATCACTCTGA+TGG - chr8_3:5702045-5702064 Msa1272210:intron 25.0%
! AATATGAAAATCACTCTGAT+GGG - chr8_3:5702046-5702065 Msa1272210:intron 25.0%
! AAATCAACACAATAAATCTC+AGG + chr8_3:5702116-5702135 None:intergenic 25.0%
! AAAAATGTTCCTAAAACTCA+GGG + chr8_3:5702309-5702328 None:intergenic 25.0%
! AAAAAATGTTCCTAAAACTC+AGG + chr8_3:5702310-5702329 None:intergenic 25.0%
! GATAGAACTAGTAAATTCAA+AGG + chr8_3:5702532-5702551 None:intergenic 25.0%
!!! TTTACTAGTTCTATCAAACT+CGG - chr8_3:5702537-5702556 Msa1272210:intron 25.0%
! TCATTATGTTACAAACTACT+TGG - chr8_3:5702592-5702611 Msa1272210:intron 25.0%
!! CTAGATTTTGCTTAATTTTC+AGG + chr8_3:5702621-5702640 None:intergenic 25.0%
! AATCTAGACATGCTAATAAT+AGG - chr8_3:5702634-5702653 Msa1272210:intron 25.0%
! ACTTATGGAATCAATATGAA+TGG - chr8_3:5702681-5702700 Msa1272210:intron 25.0%
!! AATCAATATGAATGGATTCA+AGG - chr8_3:5702689-5702708 Msa1272210:intron 25.0%
! AGAGTTTGTATGAAAATCAA+GGG + chr8_3:5702743-5702762 None:intergenic 25.0%
! AAGAGTTTGTATGAAAATCA+AGG + chr8_3:5702744-5702763 None:intergenic 25.0%
!! AGATTTAATGCCGAAATTTT+TGG - chr8_3:5702951-5702970 Msa1272210:intron 25.0%
!! AATCTTGTTTATGATCTTCA+TGG - chr8_3:5703607-5703626 Msa1272210:intron 25.0%
! TACTATTCAAATGAAAAAGG+AGG - chr8_3:5703660-5703679 Msa1272210:intron 25.0%
! AATTAATCAACATTTCACTG+CGG + chr8_3:5703699-5703718 None:intergenic 25.0%
!! TTTTCGAAATGTCTAATTGT+AGG - chr8_3:5703815-5703834 Msa1272210:intron 25.0%
! ATGCATGAAAGTTACAAAAA+TGG + chr8_3:5704066-5704085 None:intergenic 25.0%
! ACTTAAGAGTTATGTTTAGT+TGG - chr8_3:5704177-5704196 Msa1272210:CDS 25.0%
GAAAATGATGAGTGATATGA+GGG + chr8_3:5698725-5698744 None:intergenic 30.0%
TAGACAATTTAGGCTATGTT+TGG - chr8_3:5699052-5699071 Msa1272210:intron 30.0%
CTATGTTTGGCAAGAAATTA+TGG - chr8_3:5699065-5699084 Msa1272210:intron 30.0%
! GTGTTCAGAGTATTAATTGA+AGG + chr8_3:5699253-5699272 None:intergenic 30.0%
!!! CTTTTTTCAAGTAAGATGAC+AGG - chr8_3:5699537-5699556 Msa1272210:intron 30.0%
!!! TGGATTATTTTTTTTGGGTG+GGG - chr8_3:5699730-5699749 Msa1272210:CDS 30.0%
TCAATTTCTTACTTTGATGG+GGG - chr8_3:5699789-5699808 Msa1272210:CDS 30.0%
!!! ATGTTTGATTTTGTTGTTGG+TGG - chr8_3:5699898-5699917 Msa1272210:CDS 30.0%
!!! TGTTTGATTTTGTTGTTGGT+GGG - chr8_3:5699899-5699918 Msa1272210:CDS 30.0%
! ATTATGAGTACGTTGATAAG+TGG + chr8_3:5700665-5700684 None:intergenic 30.0%
AGCTTAATTATGGTCGATAT+AGG - chr8_3:5700757-5700776 Msa1272210:intron 30.0%
TTAATTATGGTCGATATAGG+TGG - chr8_3:5700760-5700779 Msa1272210:intron 30.0%
!!! GACAAGTCACTTTTTTCATA+TGG - chr8_3:5700900-5700919 Msa1272210:intron 30.0%
!!! GAAAAAACACCACTTTTTTG+CGG + chr8_3:5701004-5701023 None:intergenic 30.0%
!!! CAAAAAAGTGGTGTTTTTTC+AGG - chr8_3:5701004-5701023 Msa1272210:intron 30.0%
AGTATAAAGGAAGTCTATCA+TGG + chr8_3:5701086-5701105 None:intergenic 30.0%
CTATAAATTGGATCATGCAA+TGG - chr8_3:5701198-5701217 Msa1272210:CDS 30.0%
AAATCAACTGATATAGACTC+GGG + chr8_3:5701399-5701418 None:intergenic 30.0%
CAAATCAACTGATATAGACT+CGG + chr8_3:5701400-5701419 None:intergenic 30.0%
CATTAGTATGTTTGTGTACT+CGG - chr8_3:5701723-5701742 Msa1272210:intron 30.0%
GAAAAAGGAGAACATAGTTA+AGG - chr8_3:5701881-5701900 Msa1272210:CDS 30.0%
!!! ATTTTTTTGGTCTTAACCTC+TGG - chr8_3:5702132-5702151 Msa1272210:intron 30.0%
ATCATGACTGAAACAATCAT+TGG + chr8_3:5702226-5702245 None:intergenic 30.0%
ATGTCCCAATAAACTCTTAT+TGG + chr8_3:5702285-5702304 None:intergenic 30.0%
AAAATGTTCCTAAAACTCAG+GGG + chr8_3:5702308-5702327 None:intergenic 30.0%
CAAAGGTAACACTGTATTAT+TGG + chr8_3:5702515-5702534 None:intergenic 30.0%
!! CATATTGATTCCATAAGTGA+GGG + chr8_3:5702679-5702698 None:intergenic 30.0%
!! TCATATTGATTCCATAAGTG+AGG + chr8_3:5702680-5702699 None:intergenic 30.0%
GAGTTTGTATGAAAATCAAG+GGG + chr8_3:5702742-5702761 None:intergenic 30.0%
!!! ACAAACTCTTTTTTCGTCAT+CGG - chr8_3:5702754-5702773 Msa1272210:intron 30.0%
GCAAACTGAACCAAAAATTT+CGG + chr8_3:5702964-5702983 None:intergenic 30.0%
GAAGATTCACAAAGAAGTTT+GGG - chr8_3:5703000-5703019 Msa1272210:intron 30.0%
AAGATTCACAAAGAAGTTTG+GGG - chr8_3:5703001-5703020 Msa1272210:intron 30.0%
TAACTTAATCTTTCAGCAAC+AGG - chr8_3:5703148-5703167 Msa1272210:intron 30.0%
AAAGATAGTTGCTCTTATCA+AGG + chr8_3:5703184-5703203 None:intergenic 30.0%
TGATAAGAGCAACTATCTTT+AGG - chr8_3:5703184-5703203 Msa1272210:intron 30.0%
AACTATCTTTAGGTGTCTTT+AGG - chr8_3:5703194-5703213 Msa1272210:intron 30.0%
! GTAAAGAATTTTTACGGAGT+AGG - chr8_3:5703492-5703511 Msa1272210:intron 30.0%
TCATTTGAATAGTATAGCCA+AGG + chr8_3:5703654-5703673 None:intergenic 30.0%
TTCAAATGAAAAAGGAGGAA+CGG - chr8_3:5703665-5703684 Msa1272210:intron 30.0%
TCATTTCTGAATCATAGCTA+TGG + chr8_3:5703775-5703794 None:intergenic 30.0%
CAAAGAATCAATCGAAATTC+TGG + chr8_3:5703871-5703890 None:intergenic 30.0%
! TTTCGATTGATTCTTTGAAC+AGG - chr8_3:5703874-5703893 Msa1272210:intron 30.0%
ATTCTTTGAACAGGAAACAT+GGG - chr8_3:5703883-5703902 Msa1272210:intron 30.0%
TATTCACCAAAAAGGAATGA+AGG - chr8_3:5703993-5704012 Msa1272210:CDS 30.0%
ATTCACCAAAAAGGAATGAA+GGG - chr8_3:5703994-5704013 Msa1272210:CDS 30.0%
!! ATGACACTTTTTAATGCAAG+AGG - chr8_3:5704084-5704103 Msa1272210:CDS 30.0%
!! TGACACTTTTTAATGCAAGA+GGG - chr8_3:5704085-5704104 Msa1272210:CDS 30.0%
!! ATTCTAAAATGAACGATGCA+TGG + chr8_3:5704124-5704143 None:intergenic 30.0%
!!! GAAGAGGTTTTGTTTTGTTG+AGG + chr8_3:5698486-5698505 None:intergenic 35.0%
!! TTGATGATGATGATGTTGTG+CGG + chr8_3:5698551-5698570 None:intergenic 35.0%
CACAACATCATCATCATCAA+TGG - chr8_3:5698551-5698570 Msa1272210:three_prime_UTR 35.0%
!! AGCCATTGATTCATCATTCT+GGG - chr8_3:5698587-5698606 Msa1272210:three_prime_UTR 35.0%
GGAAAATGATGAGTGATATG+AGG + chr8_3:5698726-5698745 None:intergenic 35.0%
! ATCACTCATCATTTTCCCTT+TGG - chr8_3:5698729-5698748 Msa1272210:three_prime_UTR 35.0%
GAGAAGTGACTGAAATGAAA+AGG + chr8_3:5698799-5698818 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr8_3:5699152-5699171 None:intergenic 35.0%
!!! GACACTCATTTTAAAACGGA+GGG - chr8_3:5699391-5699410 Msa1272210:intron 35.0%
TGTTTGGTAAAATTAGCCGT+TGG - chr8_3:5699460-5699479 Msa1272210:intron 35.0%
AGATGACAGGTAAAATTGAG+AGG - chr8_3:5699550-5699569 Msa1272210:intron 35.0%
TAAGCTATAAGCTTAAAGGG+TGG - chr8_3:5699645-5699664 Msa1272210:CDS 35.0%
!!! AGGGTGGTTTTTGTTTTTTG+TGG - chr8_3:5699661-5699680 Msa1272210:CDS 35.0%
!!! GGGTGGTTTTTGTTTTTTGT+GGG - chr8_3:5699662-5699681 Msa1272210:CDS 35.0%
!!! GGATTATTTTTTTTGGGTGG+GGG - chr8_3:5699731-5699750 Msa1272210:CDS 35.0%
GGCTATTGAATGGCTTAAAT+GGG - chr8_3:5699752-5699771 Msa1272210:CDS 35.0%
GCTATTGAATGGCTTAAATG+GGG - chr8_3:5699753-5699772 Msa1272210:CDS 35.0%
CTATTGAATGGCTTAAATGG+GGG - chr8_3:5699754-5699773 Msa1272210:CDS 35.0%
TATTGAATGGCTTAAATGGG+GGG - chr8_3:5699755-5699774 Msa1272210:CDS 35.0%
!!! GTTTGATTTTGTTGTTGGTG+GGG - chr8_3:5699900-5699919 Msa1272210:CDS 35.0%
!! GGAGTTGTTGGTTATTTTCA+AGG - chr8_3:5700104-5700123 Msa1272210:intron 35.0%
TCCAATATACATGTTCGTGT+CGG - chr8_3:5700133-5700152 Msa1272210:intron 35.0%
TCCAATATCTGTGTTTGTGT+CGG - chr8_3:5700504-5700523 Msa1272210:intron 35.0%
GCACTCATACAGCTTAATTA+TGG - chr8_3:5700747-5700766 Msa1272210:intron 35.0%
! CAACTATCATTTTCCTAGGA+CGG + chr8_3:5700806-5700825 None:intergenic 35.0%
ATTCAATCTCTCGACAGTTA+AGG - chr8_3:5700857-5700876 Msa1272210:intron 35.0%
!! ATCTGTGTTGTTTGGTTTAG+AGG - chr8_3:5700956-5700975 Msa1272210:intron 35.0%
!! TCTGTGTTGTTTGGTTTAGA+GGG - chr8_3:5700957-5700976 Msa1272210:intron 35.0%
!!! AAAAGTGGTGTTTTTTCAGG+AGG - chr8_3:5701007-5701026 Msa1272210:intron 35.0%
AATTGGATCATGCAATGGTT+TGG - chr8_3:5701203-5701222 Msa1272210:CDS 35.0%
CGAGTCTATATCAGTTGATT+TGG - chr8_3:5701398-5701417 Msa1272210:CDS 35.0%
! TTTGGGATGCATAAGAACAA+CGG - chr8_3:5701456-5701475 Msa1272210:CDS 35.0%
ATGATAAGATCAAGTACCTC+TGG - chr8_3:5701562-5701581 Msa1272210:intron 35.0%
CGAGTACACAAACATACTAA+TGG + chr8_3:5701725-5701744 None:intergenic 35.0%
AGTCCGGTACTATGATAAAA+AGG + chr8_3:5701982-5702001 None:intergenic 35.0%
GTCATGATTCAAACTCTGAT+AGG - chr8_3:5702238-5702257 Msa1272210:intron 35.0%
! GTTAGGAGAGAAATTTTCTC+TGG - chr8_3:5702387-5702406 Msa1272210:intron 35.0%
! AGAGAAATTTTCTCTGGTCT+AGG - chr8_3:5702393-5702412 Msa1272210:intron 35.0%
TGATCTAGAAGCTCTTACAA+TGG + chr8_3:5702480-5702499 None:intergenic 35.0%
GTAACACTGTATTATTGGAC+TGG + chr8_3:5702510-5702529 None:intergenic 35.0%
! CGGAAAGAACCTTATTGATT+CGG - chr8_3:5702890-5702909 Msa1272210:intron 35.0%
!! GGAAAGAACCTTATTGATTC+GGG - chr8_3:5702891-5702910 Msa1272210:intron 35.0%
GGAAGATTCACAAAGAAGTT+TGG - chr8_3:5702999-5703018 Msa1272210:intron 35.0%
CTAGATATATCTTCAGCTTC+CGG - chr8_3:5703047-5703066 Msa1272210:intron 35.0%
CTTGCGAAGAAAATTCTGAA+TGG - chr8_3:5703071-5703090 Msa1272210:intron 35.0%
TGAAAGATTAAGTTAAGCCG+GGG + chr8_3:5703143-5703162 None:intergenic 35.0%
CTGAAAGATTAAGTTAAGCC+GGG + chr8_3:5703144-5703163 None:intergenic 35.0%
GCTGAAAGATTAAGTTAAGC+CGG + chr8_3:5703145-5703164 None:intergenic 35.0%
! TCTGTTTTCATAAGCTACCT+TGG - chr8_3:5703339-5703358 Msa1272210:intron 35.0%
GAGTTTATGGGAACAACTTA+TGG + chr8_3:5703381-5703400 None:intergenic 35.0%
! ATAAACATTCGTGACTGGTT+GGG + chr8_3:5703405-5703424 None:intergenic 35.0%
! AATTTTTACGGAGTAGGAAG+AGG - chr8_3:5703498-5703517 Msa1272210:intron 35.0%
TTTCTGAATCATAGCTATGG+TGG + chr8_3:5703772-5703791 None:intergenic 35.0%
AATGTCTAATTGTAGGTTGC+AGG - chr8_3:5703822-5703841 Msa1272210:intron 35.0%
GATTCTTTGAACAGGAAACA+TGG - chr8_3:5703882-5703901 Msa1272210:intron 35.0%
GCTGCAAATGAAATCTTCAA+TGG + chr8_3:5703913-5703932 None:intergenic 35.0%
AGTCTGGAAAAATTGTTGCT+TGG - chr8_3:5703970-5703989 Msa1272210:CDS 35.0%
TTGCTTGGTATTCACCAAAA+AGG - chr8_3:5703985-5704004 Msa1272210:CDS 35.0%
TGAAGTGAAGTGAAGTGAAG+AGG + chr8_3:5698502-5698521 None:intergenic 40.0%
! TGATGATGATGATGTTGTGC+GGG + chr8_3:5698550-5698569 None:intergenic 40.0%
CATCATCATCATCAATGGCT+AGG - chr8_3:5698556-5698575 Msa1272210:three_prime_UTR 40.0%
!! CAGCCATTGATTCATCATTC+TGG - chr8_3:5698586-5698605 Msa1272210:three_prime_UTR 40.0%
GTCCCAGAATGATGAATCAA+TGG + chr8_3:5698592-5698611 None:intergenic 40.0%
TGATATGAGGGAGTTGTTGA+TGG + chr8_3:5698713-5698732 None:intergenic 40.0%
AAGGAACCATACTCCTTCTT+GGG + chr8_3:5698780-5698799 None:intergenic 40.0%
AAAGGAACCATACTCCTTCT+TGG + chr8_3:5698781-5698800 None:intergenic 40.0%
TCACTTCTCCTTGATTTCAC+TGG - chr8_3:5698810-5698829 Msa1272210:CDS 40.0%
AACGATGACCAGTGAAATCA+AGG + chr8_3:5698821-5698840 None:intergenic 40.0%
TTGATTTCACTGGTCATCGT+TGG - chr8_3:5698820-5698839 Msa1272210:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr8_3:5699148-5699167 None:intergenic 40.0%
!!! CGACACTCATTTTAAAACGG+AGG - chr8_3:5699390-5699409 Msa1272210:intron 40.0%
GGGCTATTGAATGGCTTAAA+TGG - chr8_3:5699751-5699770 Msa1272210:CDS 40.0%
ACCGACACGAACATGTATAT+TGG + chr8_3:5700137-5700156 None:intergenic 40.0%
! GCACTGACACTTCAGATTAA+AGG - chr8_3:5700364-5700383 Msa1272210:intron 40.0%
TTATTACTGGTGCCTTGTGT+TGG - chr8_3:5700474-5700493 Msa1272210:intron 40.0%
ACCGACACAAACACAGATAT+TGG + chr8_3:5700508-5700527 None:intergenic 40.0%
AGGAGATAAAGCAAACTGTG+AGG + chr8_3:5700931-5700950 None:intergenic 40.0%
CCAAACAACACAGATGTTGA+AGG + chr8_3:5700951-5700970 None:intergenic 40.0%
! CCTTCAACATCTGTGTTGTT+TGG - chr8_3:5700948-5700967 Msa1272210:intron 40.0%
TTCTGATCACGATCTTACAG+TGG - chr8_3:5701320-5701339 Msa1272210:CDS 40.0%
TTGTGGTCAACAAACAACTG+AGG + chr8_3:5701357-5701376 None:intergenic 40.0%
! CAGTTGTTTGTTGACCACAA+AGG - chr8_3:5701357-5701376 Msa1272210:CDS 40.0%
TTGACCACAAAGGAAGATAC+TGG - chr8_3:5701367-5701386 Msa1272210:CDS 40.0%
TGACCACAAAGGAAGATACT+GGG - chr8_3:5701368-5701387 Msa1272210:CDS 40.0%
TGTTCTTATGCATCCCAAAG+CGG + chr8_3:5701455-5701474 None:intergenic 40.0%
! GCAGCAGTATCTGGAATTAT+TGG - chr8_3:5701654-5701673 Msa1272210:intron 40.0%
GTTACAAACTCCCTCACTTA+TGG - chr8_3:5702666-5702685 Msa1272210:intron 40.0%
TTTCGTCATCGGTGAATTGA+TGG - chr8_3:5702765-5702784 Msa1272210:intron 40.0%
TGTTAGCTCGCTAGACATTA+CGG - chr8_3:5702789-5702808 Msa1272210:intron 40.0%
TTTCTTCTCTTTGACACAGC+TGG + chr8_3:5702924-5702943 None:intergenic 40.0%
!! GTTTGCTATACTTTGCAGCA+AGG - chr8_3:5702978-5702997 Msa1272210:intron 40.0%
! CAGAATTTTCTTCGCAAGTC+CGG + chr8_3:5703069-5703088 None:intergenic 40.0%
!! AGGTGTCTTTAGGCCATTTT+TGG - chr8_3:5703204-5703223 Msa1272210:intron 40.0%
! TAAACATTCGTGACTGGTTG+GGG + chr8_3:5703404-5703423 None:intergenic 40.0%
CATAAACATTCGTGACTGGT+TGG + chr8_3:5703406-5703425 None:intergenic 40.0%
TCAGCATAAACATTCGTGAC+TGG + chr8_3:5703410-5703429 None:intergenic 40.0%
AACCATGATTGTAGACACCT+TGG - chr8_3:5703634-5703653 Msa1272210:intron 40.0%
CTGAAATTGGCATTGTGTTC+CGG - chr8_3:5703726-5703745 Msa1272210:intron 40.0%
GAATCTGCTCGAAATACAAC+TGG + chr8_3:5703849-5703868 None:intergenic 40.0%
ACCAAAAAGGAATGAAGGGA+TGG - chr8_3:5703998-5704017 Msa1272210:CDS 40.0%
! ACCATCCCTTCATTCCTTTT+TGG + chr8_3:5704002-5704021 None:intergenic 40.0%
TCCACAAAACCTCGATGGTT+GGG - chr8_3:5698626-5698645 Msa1272210:three_prime_UTR 45.0%
! CTGAAGCGTCAAGAGGAATA+GGG + chr8_3:5698671-5698690 None:intergenic 45.0%
! ACTGAAGCGTCAAGAGGAAT+AGG + chr8_3:5698672-5698691 None:intergenic 45.0%
GAGGAAGGGATAATGCCAAA+GGG + chr8_3:5698747-5698766 None:intergenic 45.0%
TGAGGAAGGGATAATGCCAA+AGG + chr8_3:5698748-5698767 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr8_3:5699149-5699168 None:intergenic 45.0%
! AGGGAGTAGCTTGTAGCTTA+TGG - chr8_3:5699410-5699429 Msa1272210:intron 45.0%
! GGGAGTAGCTTGTAGCTTAT+GGG - chr8_3:5699411-5699430 Msa1272210:intron 45.0%
! GGAGTAGCTTGTAGCTTATG+GGG - chr8_3:5699412-5699431 Msa1272210:intron 45.0%
TTTCGTGTCTGACACCAACA+CGG - chr8_3:5700408-5700427 Msa1272210:intron 45.0%
CTAAACATGTGATGCCGTGT+TGG + chr8_3:5700425-5700444 None:intergenic 45.0%
TTGGACACAACACCAACACA+AGG + chr8_3:5700489-5700508 None:intergenic 45.0%
! TTGTTTGGTTTAGAGGGCCA+TGG - chr8_3:5700963-5700982 Msa1272210:intron 45.0%
!! GGCGCTTTTCTTTTTCACCA+TGG + chr8_3:5700983-5701002 None:intergenic 45.0%
!! AGAAAAGCGCCGCAAAAAAG+TGG - chr8_3:5700992-5701011 Msa1272210:intron 45.0%
TGATCACGATCTTACAGTGG+AGG - chr8_3:5701323-5701342 Msa1272210:CDS 45.0%
CATCCCAGTATCTTCCTTTG+TGG + chr8_3:5701374-5701393 None:intergenic 45.0%
TAAGAACAACGGTAGTCCTC+AGG - chr8_3:5701467-5701486 Msa1272210:CDS 45.0%
TCAGTTGCATTAGTAGCCTG+AGG + chr8_3:5701486-5701505 None:intergenic 45.0%
ATCATAAGTAACAGCCGCCT+TGG + chr8_3:5701547-5701566 None:intergenic 45.0%
! CAAGTACCTCTGGAGAAACA+CGG - chr8_3:5701572-5701591 Msa1272210:intron 45.0%
! GGCTTGTTTCCACATTACCA+CGG - chr8_3:5701615-5701634 Msa1272210:intron 45.0%
TCCACATTACCACGGACTTA+TGG - chr8_3:5701623-5701642 Msa1272210:intron 45.0%
! ACCATAAGTCCGTGGTAATG+TGG + chr8_3:5701627-5701646 None:intergenic 45.0%
ATTCCAGATACTGCTGCATG+AGG + chr8_3:5701651-5701670 None:intergenic 45.0%
GGATCTGGTAATCCGGAATT+CGG - chr8_3:5702178-5702197 Msa1272210:intron 45.0%
TTCAAACTCTGATAGGACCC+TGG - chr8_3:5702245-5702264 Msa1272210:intron 45.0%
TCAAACTCTGATAGGACCCT+GGG - chr8_3:5702246-5702265 Msa1272210:intron 45.0%
AAGCCTAGTGAGTGAGTCAT+TGG - chr8_3:5702345-5702364 Msa1272210:intron 45.0%
AGCCTAGTGAGTGAGTCATT+GGG - chr8_3:5702346-5702365 Msa1272210:intron 45.0%
TTCCCAATGACTCACTCACT+AGG + chr8_3:5702351-5702370 None:intergenic 45.0%
GTTAGGAGTTCGTAGAACTC+TGG - chr8_3:5702428-5702447 Msa1272210:intron 45.0%
TGTGCTTCCTGGATTTGGAA+CGG - chr8_3:5702870-5702889 Msa1272210:intron 45.0%
GTTCTTTCCGTTCCAAATCC+AGG + chr8_3:5702880-5702899 None:intergenic 45.0%
!! GAACCTTATTGATTCGGGAG+AGG - chr8_3:5702896-5702915 Msa1272210:intron 45.0%
GATCCTCTCCCGAATCAATA+AGG + chr8_3:5702902-5702921 None:intergenic 45.0%
AGAAGTTTGGGGACTTAACC+CGG - chr8_3:5703012-5703031 Msa1272210:intron 45.0%
TATCTAGACGAGCATCTACC+CGG + chr8_3:5703034-5703053 None:intergenic 45.0%
AAGCTACCTTGGAGAGCTTA+TGG - chr8_3:5703350-5703369 Msa1272210:intron 45.0%
! AAACATTCGTGACTGGTTGG+GGG + chr8_3:5703403-5703422 None:intergenic 45.0%
! AGCCAAGGTGTCTACAATCA+TGG + chr8_3:5703639-5703658 None:intergenic 45.0%
ATTGGCATTGTGTTCCGGAT+CGG - chr8_3:5703731-5703750 Msa1272210:intron 45.0%
!! ACTCCACATCGCTAGCTTTA+GGG + chr8_3:5703953-5703972 None:intergenic 45.0%
TCCTCTCCACAAAACCTCGA+TGG - chr8_3:5698621-5698640 Msa1272210:three_prime_UTR 50.0%
!! ACCATCGAGGTTTTGTGGAG+AGG + chr8_3:5698625-5698644 None:intergenic 50.0%
CTCCACAAAACCTCGATGGT+TGG - chr8_3:5698625-5698644 Msa1272210:three_prime_UTR 50.0%
AGGGTCACCAGGAACAAACT+TGG + chr8_3:5698652-5698671 None:intergenic 50.0%
TCAAGAGGAATAGGGTCACC+AGG + chr8_3:5698663-5698682 None:intergenic 50.0%
! CTGGAAACTGAAGCGTCAAG+AGG + chr8_3:5698678-5698697 None:intergenic 50.0%
!! TTGATGGCGATAGAGTCTGC+TGG + chr8_3:5698697-5698716 None:intergenic 50.0%
CCATACTCCTTCTTGGGAGA+AGG + chr8_3:5698774-5698793 None:intergenic 50.0%
CCTTCTCCCAAGAAGGAGTA+TGG - chr8_3:5698771-5698790 Msa1272210:CDS 50.0%
TTTGGGTGGGGGCTATTGAA+TGG - chr8_3:5699742-5699761 Msa1272210:CDS 50.0%
TGGCTTAAATGGGGGGAAGT+AGG - chr8_3:5699762-5699781 Msa1272210:CDS 50.0%
GGCTTAAATGGGGGGAAGTA+GGG - chr8_3:5699763-5699782 Msa1272210:CDS 50.0%
GCTTAAATGGGGGGAAGTAG+GGG - chr8_3:5699764-5699783 Msa1272210:CDS 50.0%
! TATAGGTGGCTTGCAGCAAC+TGG - chr8_3:5700774-5700793 Msa1272210:intron 50.0%
CAACTGGACAATTCCGTCCT+AGG - chr8_3:5700790-5700809 Msa1272210:intron 50.0%
ATCTTACAGTGGAGGCAGCA+TGG - chr8_3:5701331-5701350 Msa1272210:CDS 50.0%
GAGACTGAGGAGGAATACGA+AGG - chr8_3:5701594-5701613 Msa1272210:intron 50.0%
! CATGAGGTACCATAAGTCCG+TGG + chr8_3:5701635-5701654 None:intergenic 50.0%
GTACCTCATGCAGCAGTATC+TGG - chr8_3:5701645-5701664 Msa1272210:intron 50.0%
GTCTTAACCTCTGGTCCCTA+GGG - chr8_3:5702141-5702160 Msa1272210:intron 50.0%
TCTTAACCTCTGGTCCCTAG+GGG - chr8_3:5702142-5702161 Msa1272210:intron 50.0%
GGAAAGGGGATCTGGTAATC+CGG - chr8_3:5702171-5702190 Msa1272210:intron 50.0%
CTGGTAATCCGGAATTCGGA+CGG - chr8_3:5702182-5702201 Msa1272210:intron 50.0%
TGGTAATCCGGAATTCGGAC+GGG - chr8_3:5702183-5702202 Msa1272210:intron 50.0%
CTTATCTCCCGTCCGAATTC+CGG + chr8_3:5702193-5702212 None:intergenic 50.0%
TCTGATAGGACCCTGGGTTT+GGG - chr8_3:5702252-5702271 Msa1272210:intron 50.0%
TGGATTAAGGCCCAAACCCA+GGG + chr8_3:5702265-5702284 None:intergenic 50.0%
TTGGATTAAGGCCCAAACCC+AGG + chr8_3:5702266-5702285 None:intergenic 50.0%
! TGGGACATCCCCTGAGTTTT+AGG - chr8_3:5702297-5702316 Msa1272210:intron 50.0%
ACGAACTCCTAACCAGAGCT+AGG + chr8_3:5702421-5702440 None:intergenic 50.0%
! GTTCCAAATCCAGGAAGCAC+AGG + chr8_3:5702871-5702890 None:intergenic 50.0%
GAAGTTTGGGGACTTAACCC+GGG - chr8_3:5703013-5703032 Msa1272210:intron 50.0%
ATCTAGACGAGCATCTACCC+GGG + chr8_3:5703033-5703052 None:intergenic 50.0%
GATTAAGTTAAGCCGGGGTG+AGG + chr8_3:5703138-5703157 None:intergenic 50.0%
GCATGTCCATAAGCTCTCCA+AGG + chr8_3:5703359-5703378 None:intergenic 50.0%
! GACTGGTTGGGGGAGTTTAT+GGG + chr8_3:5703393-5703412 None:intergenic 50.0%
! TGACTGGTTGGGGGAGTTTA+TGG + chr8_3:5703394-5703413 None:intergenic 50.0%
CCAGCTGTGATAAACCGATC+CGG + chr8_3:5703748-5703767 None:intergenic 50.0%
TGACCCTAAAGCTAGCGATG+TGG - chr8_3:5703947-5703966 Msa1272210:intron 50.0%
!! GACTCCACATCGCTAGCTTT+AGG + chr8_3:5703954-5703973 None:intergenic 50.0%
AAAGCTAGCGATGTGGAGTC+TGG - chr8_3:5703954-5703973 Msa1272210:intron 50.0%
! GCCCAACCATCGAGGTTTTG+TGG + chr8_3:5698630-5698649 None:intergenic 55.0%
CAAACTTGGCCCAACCATCG+AGG + chr8_3:5698638-5698657 None:intergenic 55.0%
! GGTTGGGCCAAGTTTGTTCC+TGG - chr8_3:5698642-5698661 Msa1272210:three_prime_UTR 55.0%
TGGGAGAAGGAGCTGAGGAA+GGG + chr8_3:5698761-5698780 None:intergenic 55.0%
TTGGGAGAAGGAGCTGAGGA+AGG + chr8_3:5698762-5698781 None:intergenic 55.0%
CTTCTTGGGAGAAGGAGCTG+AGG + chr8_3:5698766-5698785 None:intergenic 55.0%
CTCAGCTCCTTCTCCCAAGA+AGG - chr8_3:5698764-5698783 Msa1272210:CDS 55.0%
GGGGATTGCGATACCGCTTT+GGG - chr8_3:5701439-5701458 Msa1272210:CDS 55.0%
AACCCTGGCAGTAGAGACAG+CGG + chr8_3:5701519-5701538 None:intergenic 55.0%
ACTGCCAGGGTTATGTGCCA+AGG - chr8_3:5701527-5701546 Msa1272210:intron 55.0%
CAGTCTCCGTGTTTCTCCAG+AGG + chr8_3:5701581-5701600 None:intergenic 55.0%
CTGGAGAAACACGGAGACTG+AGG - chr8_3:5701581-5701600 Msa1272210:intron 55.0%
GAGAAACACGGAGACTGAGG+AGG - chr8_3:5701584-5701603 Msa1272210:intron 55.0%
GGTCTTAACCTCTGGTCCCT+AGG - chr8_3:5702140-5702159 Msa1272210:intron 55.0%
CTCTGATAGGACCCTGGGTT+TGG - chr8_3:5702251-5702270 Msa1272210:intron 55.0%
!! CTAGGAGCCTAGCTCTGGTT+AGG - chr8_3:5702411-5702430 Msa1272210:intron 55.0%
GCTCCTGTGCTTCCTGGATT+TGG - chr8_3:5702865-5702884 Msa1272210:intron 55.0%
! CCGGATCGGTTTATCACAGC+TGG - chr8_3:5703745-5703764 Msa1272210:intron 55.0%
TGGCATCCCTTGCAGCTCGT+CGG - chr8_3:5701418-5701437 Msa1272210:CDS 60.0%
CAATCCCCGACGAGCTGCAA+GGG + chr8_3:5701427-5701446 None:intergenic 60.0%
CGGGGATTGCGATACCGCTT+TGG - chr8_3:5701438-5701457 Msa1272210:CDS 60.0%
ACACCGCTGTCTCTACTGCC+AGG - chr8_3:5701513-5701532 Msa1272210:intron 60.0%
CACCGCTGTCTCTACTGCCA+GGG - chr8_3:5701514-5701533 Msa1272210:intron 60.0%
GCCAGGGTTATGTGCCAAGG+CGG - chr8_3:5701530-5701549 Msa1272210:intron 60.0%
ACCTCTGGTCCCTAGGGGAA+AGG - chr8_3:5702147-5702166 Msa1272210:intron 60.0%
CCTCTGGTCCCTAGGGGAAA+GGG - chr8_3:5702148-5702167 Msa1272210:intron 60.0%
CTCTGGTCCCTAGGGGAAAG+GGG - chr8_3:5702149-5702168 Msa1272210:intron 60.0%
TCTGGTCCCTAGGGGAAAGG+GGG - chr8_3:5702150-5702169 Msa1272210:intron 60.0%
TCCCTAGGGGAAAGGGGGAA+AGG - chr8_3:5702155-5702174 Msa1272210:intron 60.0%
CCCTTTCCCCCTTTCCCCTA+GGG + chr8_3:5702159-5702178 None:intergenic 60.0%
CCCTAGGGGAAAGGGGGAAA+GGG - chr8_3:5702156-5702175 Msa1272210:intron 60.0%
CCTAGGGGAAAGGGGGAAAG+GGG - chr8_3:5702157-5702176 Msa1272210:intron 60.0%
GGAAAGGGGGAAAGGGGATC+TGG - chr8_3:5702163-5702182 Msa1272210:intron 60.0%
CTGGTCTAGGAGCCTAGCTC+TGG - chr8_3:5702406-5702425 Msa1272210:intron 60.0%
CAGGTAGCTCCTGTGCTTCC+TGG - chr8_3:5702859-5702878 Msa1272210:intron 60.0%
AACAACCGTCAGCCTCACCC+CGG - chr8_3:5703123-5703142 Msa1272210:intron 60.0%
TTAAGCCGGGGTGAGGCTGA+CGG + chr8_3:5703131-5703150 None:intergenic 60.0%
GGCATCCCTTGCAGCTCGTC+GGG - chr8_3:5701419-5701438 Msa1272210:CDS 65.0%
GCATCCCTTGCAGCTCGTCG+GGG - chr8_3:5701420-5701439 Msa1272210:CDS 65.0%
GCAATCCCCGACGAGCTGCA+AGG + chr8_3:5701428-5701447 None:intergenic 65.0%
GCCGCCTTGGCACATAACCC+TGG + chr8_3:5701534-5701553 None:intergenic 65.0%
CCCTTTCCCCTAGGGACCAG+AGG + chr8_3:5702151-5702170 None:intergenic 65.0%
CCCCTTTCCCCCTTTCCCCT+AGG + chr8_3:5702160-5702179 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 5698473 5704331 5698473 ID=Msa1272210;Name=Msa1272210
chr8_3 mRNA 5698473 5704331 5698473 ID=Msa1272210-mRNA-1;Parent=Msa1272210;Name=Msa1272210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=97|1|1|1|1|1|5|285|465
chr8_3 exon 5698473 5698967 5698473 ID=Msa1272210-mRNA-1:exon:2069;Parent=Msa1272210-mRNA-1
chr8_3 exon 5699635 5699942 5699635 ID=Msa1272210-mRNA-1:exon:2068;Parent=Msa1272210-mRNA-1
chr8_3 exon 5701129 5701486 5701129 ID=Msa1272210-mRNA-1:exon:2067;Parent=Msa1272210-mRNA-1
chr8_3 exon 5701776 5702025 5701776 ID=Msa1272210-mRNA-1:exon:2066;Parent=Msa1272210-mRNA-1
chr8_3 exon 5703963 5704331 5703963 ID=Msa1272210-mRNA-1:exon:2065;Parent=Msa1272210-mRNA-1
chr8_3 five_prime_UTR 5704235 5704331 5704235 ID=Msa1272210-mRNA-1:five_prime_utr;Parent=Msa1272210-mRNA-1
chr8_3 CDS 5703963 5704234 5703963 ID=Msa1272210-mRNA-1:cds;Parent=Msa1272210-mRNA-1
chr8_3 CDS 5701776 5702025 5701776 ID=Msa1272210-mRNA-1:cds;Parent=Msa1272210-mRNA-1
chr8_3 CDS 5701129 5701486 5701129 ID=Msa1272210-mRNA-1:cds;Parent=Msa1272210-mRNA-1
chr8_3 CDS 5699635 5699942 5699635 ID=Msa1272210-mRNA-1:cds;Parent=Msa1272210-mRNA-1
chr8_3 CDS 5698758 5698967 5698758 ID=Msa1272210-mRNA-1:cds;Parent=Msa1272210-mRNA-1
chr8_3 three_prime_UTR 5698473 5698757 5698473 ID=Msa1272210-mRNA-1:three_prime_utr;Parent=Msa1272210-mRNA-1
Gene Sequence

>Msa1272210

ATGGCTAGGCTCAGAACAGCCATTGATTCATCATTCTGGGACTTAAACATTTCCTCTCCACAAAACCTCGATGGTTGGGCCAAGTTTGTTCCTGGTGACCCTATTCCTCTTGACGCTTCAGTTTCCAGCAGACTCTATCGCCATCAACAACTCCCTCATATCACTCATCATTTTCCCTTTGGCATTATCCCTTCCTCAGCTCCTTCTCCCAAGAAGGAGTATGGTTCCTTTTCATTTCAGTCACTTCTCCTTGATTTCACTGGTCATCGTTGGTGGCTTGCAGCAACTGGACAATTCCGTCCTAGGAAAATGATAGTTGATATTAAAAATGAGATTCGTAATGCTGCTGAATTCAATCTCTCGACAGTTAAGGACGTTGCAAAGCATTTCATTGACAAGTCACTTTTTTCATATGGGTTAACCTCACAGTTTGCTTTATCTCCTTCAACATCTGTGTTGTTTGGTTTAGAGGGCCATGGTGAAAAAGAAAAGCGCCGCAAAAAAGTGGTGTTTTTTCAGGAGCTTTCTGATCACGATCTTACAGTGGAGGCAGCATGGCCTCAGTTGTTTGTTGACCACAAAGGAAGATACTGGGATGTTCCCGAGTCTATATCAGTTGATTTGGCATCCCTTGCAGCTCGTCGGGGATTGCGATACCGCTTTGGGATGCATAAGAACAACGGTAGTCCTCAGGCTACTAATGCAACTGATAGCGACACACCGCTGTCTCTACTGCCAGGGTTATGTGCCAAGGCGGCTGTTACTTATGATAAGATCAAGTACCTCTGGAGAAACACGGAGACTGAGGAGGAATACGAAGGCTTGTTTCCACATTACCACGGACTTATGGTACCTCATGCAGCAGTATCTGGAATTATTGGTAGCTCCTGTGCTTCCTGGATTTGGAACGGAAAGAACCTTATTGATTCGGGAGAGGATCCAGCTGTGTCAAAGAGAAGAAAGAGATCTAGATTTAATGCCGAAATTTTTGGTTCAGTTTGCTATACTTTGCAGCAAGGAAGATTCACAAAGAAGTTTGGGGACTTAACCCGGGTAGATGCTCGTCTAGATATATCTTCAGCTTCCGGACTTGCGAAGAAAATTCTGAATGGTTTCAAGAGTTCTAGTGCTGACGTTATTGAACAACCGTCAGCCTCACCCCGGCTTAACTTAATCTTTCAGCAACAGGTTGCAGGTCCAGTTGTATTTCGAGCAGATTCCAGAATTTCGATTGATTCTTTGAACAGGAAACATGGGATCTCCATTGAAGATTTCATTTGCAGCTTGAATTTCTACATTGACCCTAAAGCTAGCGATGTGGAGTCTGGAAAAATTGTTGCTTGGTATTCACCAAAAAGGAATGAAGGGATGGTTGAATTGCGCTTATATGAGTTTTAA

Protein sequence

>Msa1272210

MARLRTAIDSSFWDLNISSPQNLDGWAKFVPGDPIPLDASVSSRLYRHQQLPHITHHFPFGIIPSSAPSPKKEYGSFSFQSLLLDFTGHRWWLAATGQFRPRKMIVDIKNEIRNAAEFNLSTVKDVAKHFIDKSLFSYGLTSQFALSPSTSVLFGLEGHGEKEKRRKKVVFFQELSDHDLTVEAAWPQLFVDHKGRYWDVPESISVDLASLAARRGLRYRFGMHKNNGSPQATNATDSDTPLSLLPGLCAKAAVTYDKIKYLWRNTETEEEYEGLFPHYHGLMVPHAAVSGIIGSSCASWIWNGKNLIDSGEDPAVSKRRKRSRFNAEIFGSVCYTLQQGRFTKKFGDLTRVDARLDISSASGLAKKILNGFKSSSADVIEQPSASPRLNLIFQQQVAGPVVFRADSRISIDSLNRKHGISIEDFICSLNFYIDPKASDVESGKIVAWYSPKRNEGMVELRLYEF*