AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0682460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682460 MtrunA17_Chr4g0028601 98.978 587 6 0 1 587 1 587 0.0 1147
Msa0682460 MtrunA17_Chr4g0043731 64.991 537 185 1 42 575 34 570 0.0 703
Msa0682460 MtrunA17_Chr1g0152141 52.952 542 250 4 45 582 43 583 0.0 542
Msa0682460 MtrunA17_Chr1g0152151 52.768 542 251 4 45 582 43 583 0.0 540
Msa0682460 MtrunA17_Chr1g0196761 45.810 537 287 3 48 582 33 567 3.59e-159 467
Msa0682460 MtrunA17_Chr1g0196751 46.300 527 279 3 48 572 33 557 9.67e-156 458
Msa0682460 MtrunA17_Chr5g0421251 47.046 474 247 3 46 516 34 506 1.03e-149 441
Msa0682460 MtrunA17_Chr8g0342341 42.750 531 296 4 50 574 36 564 3.55e-140 419
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682460 AT2G28000.1 85.971 556 77 1 33 587 31 586 0.0 935
Msa0682460 AT5G18820.1 60.384 573 214 5 15 583 5 568 0.0 651
Msa0682460 AT5G56500.2 51.438 591 276 7 1 584 1 587 0.0 548
Msa0682460 AT5G56500.1 51.438 591 276 7 1 584 1 587 0.0 548
Msa0682460 AT5G18820.2 61.159 466 172 3 122 583 2 462 0.0 545
Msa0682460 AT1G55490.5 51.885 557 257 6 24 574 35 586 0.0 541
Msa0682460 AT1G55490.1 51.885 557 257 6 24 574 35 586 0.0 541
Msa0682460 AT1G55490.3 51.885 557 257 6 24 574 35 586 0.0 541
Msa0682460 AT1G55490.4 51.885 557 257 6 24 574 35 586 0.0 541
Msa0682460 AT1G55490.2 51.885 557 257 6 24 574 35 586 0.0 541
Msa0682460 AT3G13470.1 51.083 554 266 4 33 582 36 588 0.0 538
Msa0682460 AT1G26230.1 45.353 538 285 5 45 574 36 572 4.69e-162 476
Msa0682460 AT5G18820.3 59.951 412 161 2 15 426 5 412 1.55e-158 461
Msa0682460 AT1G26230.4 45.665 519 275 4 62 574 3 520 1.11e-157 463
Msa0682460 AT1G26230.3 45.703 512 271 4 69 574 2 512 9.81e-156 458
Msa0682460 AT2G33210.1 45.731 527 282 3 48 572 33 557 8.23e-154 454
Msa0682460 AT3G23990.1 43.972 564 307 5 12 573 1 557 1.10e-153 454
Msa0682460 AT2G33210.2 45.731 527 277 4 48 572 33 552 4.65e-151 447
Msa0682460 AT1G26230.2 45.263 475 256 3 45 516 36 509 3.38e-142 423
Msa0682460 AT3G13860.1 43.916 526 291 3 48 571 32 555 2.75e-141 422
Msa0682460 AT1G26230.5 44.226 407 223 3 45 448 36 441 4.41e-117 356

Find 188 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAAGATTTGTAACAAAT+TGG 0.137687 4_4:+44084175 None:intergenic
GGCAGCAAAAGTTGCATTCT+TGG 0.207810 4_4:+44083282 None:intergenic
GACTACAACGGCTTCGATTT+TGG 0.214195 4_4:-44084720 Msa0682460:CDS
ATGCTGGTGCAGCTCTAATT+AGG 0.223973 4_4:-44084925 Msa0682460:CDS
TTAAGAAACATTTAAGTTAC+TGG 0.225098 4_4:+44082081 None:intergenic
TCCAATTAACTCATCATTTC+CGG 0.232061 4_4:+44084439 None:intergenic
CAACGAAGTGAAGTGGGTTT+AGG 0.237925 4_4:+44086172 None:intergenic
GCCGGAAATGATGAGTTAAT+TGG 0.254612 4_4:-44084440 Msa0682460:CDS
GCACACCTTGTTACCTTTGC+AGG 0.271719 4_4:+44082437 None:intergenic
GAGTTCCAGGCCAGTGATTT+GGG 0.275875 4_4:-44083583 Msa0682460:CDS
CTCAAGATTTGTAACAAATT+GGG 0.278339 4_4:+44084176 None:intergenic
GGCAGCAGCCACACCTGCCC+TGG 0.281465 4_4:+44082343 None:intergenic
TGAGTTCCAGGCCAGTGATT+TGG 0.282182 4_4:-44083584 Msa0682460:CDS
TTTATCAATTCCTTTCTTGA+TGG 0.284012 4_4:+44084640 None:intergenic
TCTAGTGTTTCCTTGATTGC+TGG 0.293279 4_4:+44083199 None:intergenic
CAGAATGCTGCTTCAGTGGC+TGG 0.296833 4_4:-44082410 Msa0682460:CDS
GTGAAGTGGGTTTAGGGTTT+GGG 0.299776 4_4:+44086179 None:intergenic
ACTGCTAGGTGCTGAGTTCC+AGG 0.304928 4_4:-44083596 Msa0682460:intron
AAGTAGTTGTGGAGAAAATT+AGG 0.307056 4_4:-44082535 Msa0682460:CDS
AACGAAGTGAAGTGGGTTTA+GGG 0.307821 4_4:+44086173 None:intergenic
ATATCATCTCCACCTTTAAC+AGG 0.315746 4_4:+44084575 None:intergenic
CAAAGGATGAGTTGCAATCT+AGG 0.316293 4_4:-44083465 Msa0682460:CDS
TTTAGATTAATTATTGTTGT+AGG 0.319817 4_4:-44082297 Msa0682460:three_prime_UTR
AGTGAAGTGGGTTTAGGGTT+TGG 0.329328 4_4:+44086178 None:intergenic
CTTTGATGGCAGCCACATTA+AGG 0.329763 4_4:+44083971 None:intergenic
AAAGGTGGAGATGATATAAA+AGG 0.339200 4_4:-44084569 Msa0682460:intron
TTAAGGGAGGAATGTTGTTT+TGG 0.341722 4_4:-44085026 Msa0682460:intron
GCCATCAAAGCTCCAGGATT+TGG 0.350317 4_4:-44083958 Msa0682460:CDS
TGATAAAACAGTAGCGGCTT+TGG 0.352770 4_4:-44084624 Msa0682460:CDS
ATTCCTTTCTTGATGGATAC+AGG 0.357419 4_4:+44084647 None:intergenic
AAGTTGGCTAGGCCTGTTAA+AGG 0.361241 4_4:-44084587 Msa0682460:CDS
ACCAAATCCTGGAGCTTTGA+TGG 0.365679 4_4:+44083957 None:intergenic
ATTGAGGAAGGTATTGTTCC+TGG 0.374607 4_4:-44083259 Msa0682460:CDS
TTATTGTTGTAGGTTAATTA+CGG 0.375832 4_4:-44082287 Msa0682460:three_prime_UTR
AGTTTACGATTCGGAGAAAC+TGG 0.376609 4_4:-44083404 Msa0682460:CDS
AGTAACTTAAATGTTTCTTA+AGG 0.386010 4_4:-44082079 Msa0682460:three_prime_UTR
CTCAATTGAACAACTCGGTT+TGG 0.387934 4_4:-44083542 Msa0682460:CDS
AGATATCACTGGTGAGGCTT+TGG 0.395603 4_4:-44084025 Msa0682460:CDS
TTTCTTCTCTCACCAAATCC+TGG 0.401579 4_4:+44083946 None:intergenic
GCTCAAAATGCTGGAATAGA+AGG 0.412779 4_4:-44082560 Msa0682460:CDS
GCCACACCTGCCCTGGGCTT+AGG 0.417490 4_4:+44082350 None:intergenic
GCAGCAGCCACACCTGCCCT+GGG 0.419494 4_4:+44082344 None:intergenic
CTTAAACGGTAAGGCCTTGT+GGG 0.430025 4_4:+44082321 None:intergenic
TCAATATTGCAATGTCTTGA+AGG 0.436075 4_4:+44083917 None:intergenic
TGCTGGTGCAGCTCTAATTA+GGG 0.437513 4_4:-44084924 Msa0682460:CDS
AACAAGAAGGCCCAAATCAC+TGG 0.445601 4_4:+44083573 None:intergenic
TACCTCGGGGTCCGAGAGTA+AGG 0.449271 4_4:+44085766 None:intergenic
GCATAGCACGGCGTGAATCT+TGG 0.451358 4_4:+44085823 None:intergenic
AGGAGTGGTGAATGGGAGGT+TGG 0.455590 4_4:-44082515 Msa0682460:CDS
GACAGACTCAGTTTACGATT+CGG 0.456644 4_4:-44083413 Msa0682460:CDS
GGACTTCTCAGTGTGACATC+AGG 0.457635 4_4:-44084677 Msa0682460:CDS
GCGTTGGTTGAAGCCATGTT+TGG 0.459068 4_4:+44086092 None:intergenic
AGAAAATTAGGAGTGGTGAA+TGG 0.459333 4_4:-44082523 Msa0682460:CDS
GCTGAAGCAATTGGCAAGGT+TGG 0.460825 4_4:-44084407 Msa0682460:CDS
GGATGAGTTTGGCAGTCCTA+AGG 0.461802 4_4:-44085005 Msa0682460:CDS
CGAAACTCAACGAAGTGAAG+TGG 0.461915 4_4:+44086165 None:intergenic
AAAAGATATAATTCCTCTGT+TGG 0.463003 4_4:-44084091 Msa0682460:CDS
GGCAGGAAGGCGAGCCAACA+TGG 0.463530 4_4:-44085915 Msa0682460:CDS
TGCTTATGTTCCAGCAATCA+AGG 0.463871 4_4:-44083209 Msa0682460:CDS
AGAACGGAGAATTGAGGTAG+AGG 0.464015 4_4:+44086064 None:intergenic
TAATTAATCTAAAACTTAAA+CGG 0.464303 4_4:+44082307 None:intergenic
AGATTCACGCCGTGCTATGC+AGG 0.464712 4_4:-44085820 Msa0682460:CDS
CATTCCTTCTTCGACTTCGA+CGG 0.464884 4_4:+44084337 None:intergenic
GAAAATTAGGAGTGGTGAAT+GGG 0.464921 4_4:-44082522 Msa0682460:CDS
ACACCATCGTTTACAACCTT+AGG 0.465120 4_4:+44084989 None:intergenic
GCTCGGGAAATCATTAAGCT+TGG 0.465886 4_4:-44084698 Msa0682460:CDS
TGCTGCTTCAGTGGCTGGGA+TGG 0.468314 4_4:-44082405 Msa0682460:CDS
AATAATAGTGGTAGAATCCT+TGG 0.468846 4_4:+44083501 None:intergenic
AGGAGCTGACATTGTTCAAA+AGG 0.472940 4_4:-44083158 Msa0682460:intron
GCCTAAGCCCAGGGCAGGTG+TGG 0.478150 4_4:-44082351 Msa0682460:CDS
CAAGACATTGCAATATTGAC+AGG 0.482708 4_4:-44083913 Msa0682460:intron
AAGTTTACGATCCTCAAGTT+CGG 0.483262 4_4:+44083318 None:intergenic
GAGAGGATCGCTAAATTGTC+TGG 0.483357 4_4:-44083379 Msa0682460:CDS
GGTGTGGCTGCTGCCCCACA+AGG 0.483680 4_4:-44082335 Msa0682460:CDS
GGTGGAAGAGCTAGAGAAGT+TGG 0.484594 4_4:-44084603 Msa0682460:CDS
GCCGTTGCTTCTATTTCTGC+CGG 0.487817 4_4:-44084458 Msa0682460:CDS
TCAAGATTTGTAACAAATTG+GGG 0.491716 4_4:+44084177 None:intergenic
TTTCTTGATGGATACAGGAT+TGG 0.493194 4_4:+44084652 None:intergenic
TTTCAGGCACAAACGAGTCT+TGG 0.494367 4_4:-44085936 Msa0682460:intron
AGGCACAAACGAGTCTTGGC+AGG 0.494650 4_4:-44085932 Msa0682460:CDS
TCACGCCGTGCTATGCAGGC+TGG 0.498346 4_4:-44085816 Msa0682460:CDS
TAAAACAGTAGCGGCTTTGG+TGG 0.499019 4_4:-44084621 Msa0682460:CDS
CTTTGCAGGGTCGATGACTC+CGG 0.499315 4_4:+44082451 None:intergenic
GATGCTGTTGGCCTTACTCT+CGG 0.499566 4_4:-44085777 Msa0682460:CDS
GAAGGCCCAAATCACTGGCC+TGG 0.503715 4_4:+44083578 None:intergenic
AATAGAAGGTGAAGTAGTTG+TGG 0.504535 4_4:-44082546 Msa0682460:CDS
TGGTTAGTTACCTGGTTGGT+AGG 0.506460 4_4:+44086041 None:intergenic
ACTAATGACTCAGCTGGAGA+TGG 0.509296 4_4:-44084743 Msa0682460:CDS
TCAATGGATAAAACACCATC+AGG 0.509941 4_4:+44084383 None:intergenic
CTTCGACACTCTTCCAAACA+TGG 0.512214 4_4:-44086105 Msa0682460:exon
TGAGGTAGAGGATAGAGCGT+TGG 0.515182 4_4:+44086076 None:intergenic
TTGAGGTGCTTTCAACAAGA+AGG 0.515520 4_4:+44083560 None:intergenic
AAGTAGAGGTCATCAACAAT+TGG 0.515774 4_4:-44086263 Msa0682460:five_prime_UTR
GGAAGGCGAGCCAACATGGG+AGG 0.516467 4_4:-44085911 Msa0682460:CDS
TGTAATTAACCCTCCCATGT+TGG 0.518198 4_4:+44085901 None:intergenic
TCATTGATTGCTCAAAATGC+TGG 0.518366 4_4:-44082569 Msa0682460:CDS
AGAATGCTGCTTCAGTGGCT+GGG 0.520388 4_4:-44082409 Msa0682460:CDS
TATGAGAATTTAATTGACTC+CGG 0.523884 4_4:-44082470 Msa0682460:CDS
ACAACCGTCGAAGTCGAAGA+AGG 0.524172 4_4:-44084341 Msa0682460:CDS
TCCTGGAGGAGGTACTGCAT+TGG 0.524231 4_4:-44083242 Msa0682460:CDS
CACTTGCTTTAACCACAAAA+CGG 0.526937 4_4:+44085865 None:intergenic
CTTCGGCAATGATAAGCAAA+GGG 0.527412 4_4:+44084046 None:intergenic
TATTGAGTTACCTGATGCTA+TGG 0.527504 4_4:-44084951 Msa0682460:CDS
TCTGCAGAATGCTGCTTCAG+TGG 0.527899 4_4:-44082414 Msa0682460:CDS
AGCCTCACCAGTGATATCTT+CGG 0.529074 4_4:+44084029 None:intergenic
CAAACCGAGTTGTTCAATTG+AGG 0.529199 4_4:+44083543 None:intergenic
AATCTAAAACTTAAACGGTA+AGG 0.533828 4_4:+44082312 None:intergenic
AGTAAAACTAATGACTCAGC+TGG 0.535745 4_4:-44084749 Msa0682460:CDS
GGATCGTAAACTTAGAATTG+AGG 0.536649 4_4:-44083308 Msa0682460:CDS
GTGGCTGCCATCAAAGCTCC+AGG 0.538427 4_4:-44083964 Msa0682460:CDS
ACAATGATTGCTGAAGCAAT+TGG 0.546352 4_4:-44084416 Msa0682460:CDS
AATCCTGTATCCATCAAGAA+AGG 0.546417 4_4:-44084650 Msa0682460:CDS
AAGAGCTAGAGAAGTTGGCT+AGG 0.546860 4_4:-44084598 Msa0682460:CDS
AAACGAGGAGGAAGACTCAA+TGG 0.548881 4_4:+44084367 None:intergenic
GAAAAGCCTAAGCCCAGGGC+AGG 0.551086 4_4:-44082356 Msa0682460:CDS
TATTGCTGATGCTGCATCAA+AGG 0.553754 4_4:-44083482 Msa0682460:CDS
ACTTAAACGGTAAGGCCTTG+TGG 0.553935 4_4:+44082320 None:intergenic
GAAGGTATTGTTCCTGGAGG+AGG 0.556257 4_4:-44083253 Msa0682460:CDS
GATAAACTTGCTGATGCTGT+TGG 0.556730 4_4:-44085789 Msa0682460:CDS
AAAGGATGAGTTGCAATCTA+GGG 0.556934 4_4:-44083464 Msa0682460:CDS
ATCAACAATTGGTGAAGAGT+AGG 0.558233 4_4:-44086252 Msa0682460:five_prime_UTR
TTGTCGAAAAGCCTAAGCCC+AGG 0.559479 4_4:-44082361 Msa0682460:CDS
CGTCGAAGTCGAAGAAGGAA+TGG 0.560458 4_4:-44084336 Msa0682460:CDS
GGTAGGAGAACGGAGAATTG+AGG 0.562827 4_4:+44086058 None:intergenic
CAATTCCAGCCTGCATAGCA+CGG 0.564119 4_4:+44085811 None:intergenic
AGGATTTGGTGAGAGAAGAA+AGG 0.566687 4_4:-44083944 Msa0682460:CDS
CACACCTTGTTACCTTTGCA+GGG 0.568256 4_4:+44082438 None:intergenic
CTAATGACTCAGCTGGAGAT+GGG 0.568805 4_4:-44084742 Msa0682460:CDS
AACAATTGGTGAAGAGTAGG+AGG 0.572932 4_4:-44086249 Msa0682460:five_prime_UTR
TGCAGCATCAGCAATAATAG+TGG 0.578409 4_4:+44083489 None:intergenic
ACCAATGCAGTACCTCCTCC+AGG 0.579777 4_4:+44083241 None:intergenic
GCAGGAAGGCGAGCCAACAT+GGG 0.585490 4_4:-44085914 Msa0682460:CDS
ATTGGCAAGGTTGGACCTGA+TGG 0.586040 4_4:-44084398 Msa0682460:CDS
CACGCAGCTTGTTCACAACA+AGG 0.586245 4_4:+44083998 None:intergenic
AGGAACAATACCTTCCTCAA+TGG 0.588410 4_4:+44083261 None:intergenic
TCCGGCAGAAATAGAAGCAA+CGG 0.588757 4_4:+44084457 None:intergenic
AATTAGGAGTGGTGAATGGG+AGG 0.589015 4_4:-44082519 Msa0682460:CDS
TGGTGGAGTTGCAGTCATCA+AGG 0.589967 4_4:-44083359 Msa0682460:CDS
CACTAGAAGACGCAGATGAG+AGG 0.592181 4_4:-44083183 Msa0682460:CDS
AGTGGTAGAATCCTTGGAGA+TGG 0.595972 4_4:+44083507 None:intergenic
ATCATTGCCGAAGATATCAC+TGG 0.598076 4_4:-44084036 Msa0682460:CDS
TCTTCGGCAATGATAAGCAA+AGG 0.598336 4_4:+44084045 None:intergenic
CCTGATGCTATGGAAAATGC+TGG 0.601164 4_4:-44084941 Msa0682460:CDS
TGCTACAGAGACCGAACTTG+AGG 0.605909 4_4:-44083329 Msa0682460:CDS
CGGAGTCATCGACCCTGCAA+AGG 0.605948 4_4:-44082450 Msa0682460:CDS
GAAATGGTTAGTTACCTGGT+TGG 0.606997 4_4:+44086037 None:intergenic
TCGACCCTGCAAAGGTAACA+AGG 0.607538 4_4:-44082442 Msa0682460:CDS
ACGGCGTGAATCTTGGTCAA+AGG 0.607568 4_4:+44085830 None:intergenic
TATTGCAATGTCTTGAAGGA+GGG 0.612191 4_4:+44083921 None:intergenic
GAAGACGCAGATGAGAGGCT+AGG 0.612286 4_4:-44083178 Msa0682460:CDS
TGGAAGAGTGTCGAAGAGTG+TGG 0.614699 4_4:+44086112 None:intergenic
TTGGCTAGGCCTGTTAAAGG+TGG 0.615079 4_4:-44084584 Msa0682460:CDS
TCTCCGTTCTCCTACCAACC+AGG 0.616314 4_4:-44086051 Msa0682460:intron
AGACAATTTAGCGATCCTCT+CGG 0.616828 4_4:+44083381 None:intergenic
TTACCTGGTTGGTAGGAGAA+CGG 0.618698 4_4:+44086048 None:intergenic
GGAGTTGCAGTCATCAAGGT+CGG 0.619796 4_4:-44083355 Msa0682460:CDS
CAAAGGGGCTCTCAATTGAG+TGG 0.620297 4_4:+44084062 None:intergenic
ACAAACGAGTCTTGGCAGGA+AGG 0.621340 4_4:-44085928 Msa0682460:CDS
ATTCTCATAAGTGTCTGTCA+TGG 0.622423 4_4:+44082484 None:intergenic
GAAGAGTGTGGATAAGATGA+TGG 0.623177 4_4:+44086124 None:intergenic
GAAGGCGAGCCAACATGGGA+GGG 0.628786 4_4:-44085910 Msa0682460:CDS
TTCGACAACAATGGCCTGTG+TGG 0.630520 4_4:+44082376 None:intergenic
GTTGTGGAGAAAATTAGGAG+TGG 0.632624 4_4:-44082530 Msa0682460:CDS
ATATTGCAATGTCTTGAAGG+AGG 0.635052 4_4:+44083920 None:intergenic
GAAACTCAACGAAGTGAAGT+GGG 0.636002 4_4:+44086166 None:intergenic
TATGACTTGTAGATTGACAG+AGG 0.636079 4_4:-44084210 Msa0682460:intron
TGCCGAAGATATCACTGGTG+AGG 0.639474 4_4:-44084031 Msa0682460:CDS
AGGATCGCTAAATTGTCTGG+TGG 0.640845 4_4:-44083376 Msa0682460:CDS
ATTCGGAGAAACTGGCCGAG+AGG 0.643581 4_4:-44083396 Msa0682460:CDS
TCGAAAAGTGACCATCTCCA+AGG 0.643733 4_4:-44083518 Msa0682460:CDS
AGCACCTCAATTGAACAACT+CGG 0.644633 4_4:-44083547 Msa0682460:CDS
GGCCTTACTCTCGGACCCCG+AGG 0.649612 4_4:-44085768 Msa0682460:intron
TGTCGAAAAGCCTAAGCCCA+GGG 0.650837 4_4:-44082360 Msa0682460:CDS
AGGAATTGATAAAACAGTAG+CGG 0.654535 4_4:-44084630 Msa0682460:CDS
GATTGCTGAAGCAATTGGCA+AGG 0.668567 4_4:-44084411 Msa0682460:CDS
AGTCCTAAGGTTGTAAACGA+TGG 0.671771 4_4:-44084992 Msa0682460:CDS
GCTGCGTGGTATCCTTAATG+TGG 0.674392 4_4:-44083983 Msa0682460:CDS
TTAAACGGTAAGGCCTTGTG+GGG 0.676362 4_4:+44082322 None:intergenic
GACGGTTGTCTCAAACGAGG+AGG 0.683850 4_4:+44084355 None:intergenic
CGAAGTCGAAGAAGGAATGG+AGG 0.684643 4_4:-44084333 Msa0682460:intron
AGCTGGAGATGGGACTACAA+CGG 0.691077 4_4:-44084732 Msa0682460:CDS
TGGTGCAGCTCTAATTAGGG+AGG 0.702507 4_4:-44084921 Msa0682460:intron
ACGCAGCTTGTTCACAACAA+GGG 0.703024 4_4:+44083999 None:intergenic
GAGGAAGGTATTGTTCCTGG+AGG 0.714595 4_4:-44083256 Msa0682460:CDS
TGGGATGGTCTTGACCACAC+AGG 0.718657 4_4:-44082390 Msa0682460:CDS
TTCGGCAATGATAAGCAAAG+GGG 0.721019 4_4:+44084047 None:intergenic
CTTGTTGTGAACAAGCTGCG+TGG 0.747846 4_4:-44083997 Msa0682460:CDS
TTCGACGGTTGTCTCAAACG+AGG 0.759858 4_4:+44084352 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACATTGTTTTTTTTTTAA+GGG - chr4_4:44083296-44083315 Msa0682460:CDS 10.0%
!!! TAATTAATCTAAAACTTAAA+CGG + chr4_4:44086034-44086053 None:intergenic 10.0%
!! ATTAAATGAAAATGAATGAA+GGG + chr4_4:44082327-44082346 None:intergenic 15.0%
!! AATTAAATGAAAATGAATGA+AGG + chr4_4:44082328-44082347 None:intergenic 15.0%
!!! TTAGTATTATTGCTATTATA+TGG - chr4_4:44083261-44083280 Msa0682460:CDS 15.0%
!!! TAGTATTATTGCTATTATAT+GGG - chr4_4:44083262-44083281 Msa0682460:CDS 15.0%
!!! GAAACATTGTTTTTTTTTTA+AGG - chr4_4:44083295-44083314 Msa0682460:CDS 15.0%
!! TGTTTAATCATGTTAAATAA+TGG - chr4_4:44084542-44084561 Msa0682460:intron 15.0%
!!! AAAGTAATATCAACATTTTA+AGG - chr4_4:44085474-44085493 Msa0682460:intron 15.0%
!! TTTAGATTAATTATTGTTGT+AGG - chr4_4:44086041-44086060 Msa0682460:intron 15.0%
!! TTAAATGAAAATGAATGAAG+GGG + chr4_4:44082326-44082345 None:intergenic 20.0%
!!! TTTTGTAATTAAGTGCTTTT+GGG + chr4_4:44082354-44082373 None:intergenic 20.0%
!!! ATTTTGTAATTAAGTGCTTT+TGG + chr4_4:44082355-44082374 None:intergenic 20.0%
!!! AATTTTCGATTATTTGTTTC+AGG - chr4_4:44082386-44082405 Msa0682460:CDS 20.0%
!! TTGAATGTAATTATATGTGT+TGG - chr4_4:44082612-44082631 Msa0682460:intron 20.0%
!!! TGAATCTGAATGTATTTTTT+CGG - chr4_4:44082768-44082787 Msa0682460:intron 20.0%
!! TACATTTCAAAAAGATACAT+GGG + chr4_4:44083144-44083163 None:intergenic 20.0%
!!! TATGAAGATTTTTGTTTACA+TGG - chr4_4:44083484-44083503 Msa0682460:CDS 20.0%
!!! TATTGTTTTTTTGTTTGAGT+CGG - chr4_4:44083515-44083534 Msa0682460:CDS 20.0%
!! TACTATAAGAACATTTGATT+TGG - chr4_4:44083801-44083820 Msa0682460:intron 20.0%
!!! CATAAACTAAATTTTTGAAC+AGG + chr4_4:44084573-44084592 None:intergenic 20.0%
!! ATTGTTGTAAATTGTAATCA+TGG + chr4_4:44085274-44085293 None:intergenic 20.0%
!! AAATAATATCAACATTTCCA+GGG - chr4_4:44085393-44085412 Msa0682460:intron 20.0%
!! GCTTGAAACATTAATTTATA+AGG + chr4_4:44085431-44085450 None:intergenic 20.0%
!! AAAAAGGGATGAAAAATAAA+TGG + chr4_4:44085641-44085660 None:intergenic 20.0%
!!! ATATTGATGAAGTTTTGATA+GGG + chr4_4:44085667-44085686 None:intergenic 20.0%
!! TTATTGTTGTAGGTTAATTA+CGG - chr4_4:44086051-44086070 Msa0682460:intron 20.0%
!!! TTAAGAAACATTTAAGTTAC+TGG + chr4_4:44086260-44086279 None:intergenic 20.0%
!! AGTAACTTAAATGTTTCTTA+AGG - chr4_4:44086259-44086278 Msa0682460:five_prime_UTR 20.0%
! ACTCAAATTATCATATACCT+CGG + chr4_4:44082590-44082609 None:intergenic 25.0%
!!! GTATTTTTTCGGATAAAATG+CGG - chr4_4:44082779-44082798 Msa0682460:intron 25.0%
! ATAAGCTCAAATAAGCTAAT+TGG - chr4_4:44083112-44083131 Msa0682460:intron 25.0%
! GTACATTTCAAAAAGATACA+TGG + chr4_4:44083145-44083164 None:intergenic 25.0%
!!! TGGATTTTTTTAGAAATGTG+AGG - chr4_4:44083178-44083197 Msa0682460:CDS 25.0%
!!! ATTTTTTTAGAAATGTGAGG+TGG - chr4_4:44083181-44083200 Msa0682460:CDS 25.0%
!!! CATTGTTTTTTTTTTAAGGG+AGG - chr4_4:44083299-44083318 Msa0682460:CDS 25.0%
!!! TGATGTTGATTTAAAACTGA+AGG - chr4_4:44083561-44083580 Msa0682460:CDS 25.0%
! TTTATCAATTCCTTTCTTGA+TGG + chr4_4:44083701-44083720 None:intergenic 25.0%
!!! GATTTGGTTTAATTTTTGAC+TGG - chr4_4:44083817-44083836 Msa0682460:intron 25.0%
! TCCAATTATAAACATTCACT+GGG + chr4_4:44084066-44084085 None:intergenic 25.0%
! TTCCAATTATAAACATTCAC+TGG + chr4_4:44084067-44084086 None:intergenic 25.0%
! AAAGCAATAGAATTAGAAGT+GGG + chr4_4:44084108-44084127 None:intergenic 25.0%
! AAAAGCAATAGAATTAGAAG+TGG + chr4_4:44084109-44084128 None:intergenic 25.0%
! TCAAGATTTGTAACAAATTG+GGG + chr4_4:44084164-44084183 None:intergenic 25.0%
! CTCAAGATTTGTAACAAATT+GGG + chr4_4:44084165-44084184 None:intergenic 25.0%
! TCTCAAGATTTGTAACAAAT+TGG + chr4_4:44084166-44084185 None:intergenic 25.0%
!! CTTTTATTGCAGAAATCTTT+TGG + chr4_4:44084232-44084251 None:intergenic 25.0%
! AAAAGATATAATTCCTCTGT+TGG - chr4_4:44084247-44084266 Msa0682460:intron 25.0%
!!! TAGACGTATTCATTGTTTTT+TGG - chr4_4:44084459-44084478 Msa0682460:CDS 25.0%
! AAACAATAATCATAGCATAC+TGG + chr4_4:44085239-44085258 None:intergenic 25.0%
! CAAATAATATCAACATTTCC+AGG - chr4_4:44085392-44085411 Msa0682460:intron 25.0%
!!! TCAACATTTTAAGGTTATTC+TGG - chr4_4:44085483-44085502 Msa0682460:intron 25.0%
!!! AAATGGATTTTCTTGAAAAC+TGG + chr4_4:44085624-44085643 None:intergenic 25.0%
!!! GTTTTGATAGGGAAAAAAAA+GGG + chr4_4:44085656-44085675 None:intergenic 25.0%
!!! AGTTTTGATAGGGAAAAAAA+AGG + chr4_4:44085657-44085676 None:intergenic 25.0%
!!! GATATTGATGAAGTTTTGAT+AGG + chr4_4:44085668-44085687 None:intergenic 25.0%
!! TTTTCCTTTTGTCTATGTAT+AGG - chr4_4:44085729-44085748 Msa0682460:intron 25.0%
!! TATGAGAATTTAATTGACTC+CGG - chr4_4:44085868-44085887 Msa0682460:CDS 25.0%
!! AATCTAAAACTTAAACGGTA+AGG + chr4_4:44086029-44086048 None:intergenic 25.0%
!!! AAGATTTGTTTTGATTGATG+AGG - chr4_4:44086161-44086180 Msa0682460:five_prime_UTR 25.0%
!!! AGATTTGTTTTGATTGATGA+GGG - chr4_4:44086162-44086181 Msa0682460:five_prime_UTR 25.0%
TCAAATTATCATATACCTCG+GGG + chr4_4:44082588-44082607 None:intergenic 30.0%
CTCAAATTATCATATACCTC+GGG + chr4_4:44082589-44082608 None:intergenic 30.0%
TTATATGTGTTGTCTCATAC+TGG - chr4_4:44082661-44082680 Msa0682460:intron 30.0%
TGACTTTGGATTTGCATAAA+TGG - chr4_4:44082724-44082743 Msa0682460:intron 30.0%
! ATAAGCTCTTTTACCAAACA+GGG + chr4_4:44082805-44082824 None:intergenic 30.0%
! AATAAGCTCTTTTACCAAAC+AGG + chr4_4:44082806-44082825 None:intergenic 30.0%
! TTTTCGAATGGTTTCTCTAA+TGG + chr4_4:44082943-44082962 None:intergenic 30.0%
AACCATTCGAAAAGATTTAG+AGG - chr4_4:44082950-44082969 Msa0682460:intron 30.0%
! CAATGAGTTGGATTCAAATA+TGG - chr4_4:44082974-44082993 Msa0682460:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr4_4:44082994-44083013 Msa0682460:intron 30.0%
AGCTTATTTGAGCTTATCTA+CGG + chr4_4:44083109-44083128 None:intergenic 30.0%
!!! AATGTTGTTTTGGATGAGTT+TGG - chr4_4:44083322-44083341 Msa0682460:CDS 30.0%
AGGAATTGATAAAACAGTAG+CGG - chr4_4:44083708-44083727 Msa0682460:intron 30.0%
AAAGGTGGAGATGATATAAA+AGG - chr4_4:44083769-44083788 Msa0682460:intron 30.0%
! GGAGATGATATAAAAGGTAT+TGG - chr4_4:44083775-44083794 Msa0682460:intron 30.0%
TCCAATTAACTCATCATTTC+CGG + chr4_4:44083902-44083921 None:intergenic 30.0%
TCCCAGTGAATGTTTATAAT+TGG - chr4_4:44084062-44084081 Msa0682460:CDS 30.0%
! TATTGCAGAAATCTTTTGGT+CGG + chr4_4:44084228-44084247 None:intergenic 30.0%
TCAATATTGCAATGTCTTGA+AGG + chr4_4:44084424-44084443 None:intergenic 30.0%
TGCAAGCATCATAATATATG+TGG - chr4_4:44084486-44084505 Msa0682460:intron 30.0%
! ATTTTGTGCATTTAACTGCT+AGG - chr4_4:44084728-44084747 Msa0682460:CDS 30.0%
AATAATAGTGGTAGAATCCT+TGG + chr4_4:44084840-44084859 None:intergenic 30.0%
CAAACAAAGAAACAGAGTAT+GGG + chr4_4:44085521-44085540 None:intergenic 30.0%
! CATACTCTGTTTCTTTGTTT+GGG - chr4_4:44085520-44085539 Msa0682460:intron 30.0%
! TTTCTTTGTTTGGGTCAAAA+GGG - chr4_4:44085529-44085548 Msa0682460:intron 30.0%
AATGCCTATACATAGACAAA+AGG + chr4_4:44085736-44085755 None:intergenic 30.0%
! TTTTGTCTATGTATAGGCAT+TGG - chr4_4:44085735-44085754 Msa0682460:intron 30.0%
AAGTAGTTGTGGAGAAAATT+AGG - chr4_4:44085803-44085822 Msa0682460:CDS 30.0%
!! TTTTGATTGATGAGGGATAA+GGG - chr4_4:44086169-44086188 Msa0682460:five_prime_UTR 30.0%
ATCAACAATTGGTGAAGAGT+AGG - chr4_4:44082086-44082105 Msa0682460:three_prime_UTR 35.0%
GAAAATGAATGAAGGGGAAA+TGG + chr4_4:44082320-44082339 None:intergenic 35.0%
! ACAGAAAGTTAACCGTTTTG+TGG - chr4_4:44082461-44082480 Msa0682460:CDS 35.0%
CACTTGCTTTAACCACAAAA+CGG + chr4_4:44082476-44082495 None:intergenic 35.0%
GAAAACATGGAATGTGACTT+TGG - chr4_4:44082710-44082729 Msa0682460:intron 35.0%
! GACCTCTAAATCTTTTCGAA+TGG + chr4_4:44082955-44082974 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr4_4:44082962-44082981 Msa0682460:intron 35.0%
! AATGTACTTCTAGAAACGTG+TGG - chr4_4:44083158-44083177 Msa0682460:intron 35.0%
!! TTAAGGGAGGAATGTTGTTT+TGG - chr4_4:44083312-44083331 Msa0682460:CDS 35.0%
TATTGAGTTACCTGATGCTA+TGG - chr4_4:44083387-44083406 Msa0682460:CDS 35.0%
!!! TGTTTTTTTGTTTGAGTCGG+TGG - chr4_4:44083518-44083537 Msa0682460:CDS 35.0%
AGTAAAACTAATGACTCAGC+TGG - chr4_4:44083589-44083608 Msa0682460:CDS 35.0%
! TTTCTTGATGGATACAGGAT+TGG + chr4_4:44083689-44083708 None:intergenic 35.0%
AATCCTGTATCCATCAAGAA+AGG - chr4_4:44083688-44083707 Msa0682460:intron 35.0%
! ATTCCTTTCTTGATGGATAC+AGG + chr4_4:44083694-44083713 None:intergenic 35.0%
ATATCATCTCCACCTTTAAC+AGG + chr4_4:44083766-44083785 None:intergenic 35.0%
ACAATGATTGCTGAAGCAAT+TGG - chr4_4:44083922-44083941 Msa0682460:CDS 35.0%
TCAATGGATAAAACACCATC+AGG + chr4_4:44083958-44083977 None:intergenic 35.0%
! TATGACTTGTAGATTGACAG+AGG - chr4_4:44084128-44084147 Msa0682460:CDS 35.0%
TATTGCAATGTCTTGAAGGA+GGG + chr4_4:44084420-44084439 None:intergenic 35.0%
ATATTGCAATGTCTTGAAGG+AGG + chr4_4:44084421-44084440 None:intergenic 35.0%
CAAGACATTGCAATATTGAC+AGG - chr4_4:44084425-44084444 Msa0682460:CDS 35.0%
AAACCTACATAGTACATGAC+TGG + chr4_4:44084518-44084537 None:intergenic 35.0%
! ATCGGTTCTTTGTTGTATCA+TGG + chr4_4:44084661-44084680 None:intergenic 35.0%
ATGATACAACAAAGAACCGA+TGG - chr4_4:44084660-44084679 Msa0682460:CDS 35.0%
AAAGGATGAGTTGCAATCTA+GGG - chr4_4:44084874-44084893 Msa0682460:intron 35.0%
AAGTTTACGATCCTCAAGTT+CGG + chr4_4:44085023-44085042 None:intergenic 35.0%
GGATCGTAAACTTAGAATTG+AGG - chr4_4:44085030-44085049 Msa0682460:intron 35.0%
GTGCTTACAGTGAAAATTTG+TGG + chr4_4:44085373-44085392 None:intergenic 35.0%
TTCAAGCATCATATAACTCG+TGG - chr4_4:44085444-44085463 Msa0682460:intron 35.0%
CCAAACAAAGAAACAGAGTA+TGG + chr4_4:44085522-44085541 None:intergenic 35.0%
! CCATACTCTGTTTCTTTGTT+TGG - chr4_4:44085519-44085538 Msa0682460:intron 35.0%
! GTTTCTTTGTTTGGGTCAAA+AGG - chr4_4:44085528-44085547 Msa0682460:intron 35.0%
! TTCTTTGTTTGGGTCAAAAG+GGG - chr4_4:44085530-44085549 Msa0682460:intron 35.0%
! TTTTGAGCAATCAATGATGC+AGG + chr4_4:44085766-44085785 None:intergenic 35.0%
! TCATTGATTGCTCAAAATGC+TGG - chr4_4:44085769-44085788 Msa0682460:CDS 35.0%
AATAGAAGGTGAAGTAGTTG+TGG - chr4_4:44085792-44085811 Msa0682460:CDS 35.0%
AGAAAATTAGGAGTGGTGAA+TGG - chr4_4:44085815-44085834 Msa0682460:CDS 35.0%
GAAAATTAGGAGTGGTGAAT+GGG - chr4_4:44085816-44085835 Msa0682460:CDS 35.0%
ATTCTCATAAGTGTCTGTCA+TGG + chr4_4:44085857-44085876 None:intergenic 35.0%
! AGTGAAAGAGCTTGTGTTTT+TGG - chr4_4:44086094-44086113 Msa0682460:exon 35.0%
!!! GTTTTGATTGATGAGGGATA+AGG - chr4_4:44086168-44086187 Msa0682460:five_prime_UTR 35.0%
AACAATTGGTGAAGAGTAGG+AGG - chr4_4:44082089-44082108 Msa0682460:three_prime_UTR 40.0%
! AACGAAGTGAAGTGGGTTTA+GGG + chr4_4:44082168-44082187 None:intergenic 40.0%
GAAACTCAACGAAGTGAAGT+GGG + chr4_4:44082175-44082194 None:intergenic 40.0%
! GAAGAGTGTGGATAAGATGA+TGG + chr4_4:44082217-44082236 None:intergenic 40.0%
! GAAATGGTTAGTTACCTGGT+TGG + chr4_4:44082304-44082323 None:intergenic 40.0%
TGTAATTAACCCTCCCATGT+TGG + chr4_4:44082440-44082459 None:intergenic 40.0%
!! GATAAACTTGCTGATGCTGT+TGG - chr4_4:44082549-44082568 Msa0682460:CDS 40.0%
CTGATGCGTTAGTGAAAACA+TGG - chr4_4:44082697-44082716 Msa0682460:intron 40.0%
AGTCCTAAGGTTGTAAACGA+TGG - chr4_4:44083346-44083365 Msa0682460:CDS 40.0%
ACACCATCGTTTACAACCTT+AGG + chr4_4:44083352-44083371 None:intergenic 40.0%
! TTGTTTGAGTCGGTGGTTTT+TGG - chr4_4:44083525-44083544 Msa0682460:CDS 40.0%
TGATAAAACAGTAGCGGCTT+TGG - chr4_4:44083714-44083733 Msa0682460:intron 40.0%
GCCGGAAATGATGAGTTAAT+TGG - chr4_4:44083898-44083917 Msa0682460:intron 40.0%
TTCGGCAATGATAAGCAAAG+GGG + chr4_4:44084294-44084313 None:intergenic 40.0%
CTTCGGCAATGATAAGCAAA+GGG + chr4_4:44084295-44084314 None:intergenic 40.0%
TCTTCGGCAATGATAAGCAA+AGG + chr4_4:44084296-44084315 None:intergenic 40.0%
ATCATTGCCGAAGATATCAC+TGG - chr4_4:44084302-44084321 Msa0682460:intron 40.0%
TTTCTTCTCTCACCAAATCC+TGG + chr4_4:44084395-44084414 None:intergenic 40.0%
!! AGGATTTGGTGAGAGAAGAA+AGG - chr4_4:44084394-44084413 Msa0682460:CDS 40.0%
TGTCCAGTCATGTACTATGT+AGG - chr4_4:44084512-44084531 Msa0682460:intron 40.0%
AACTTGTGTTTCCTTGCCAT+CGG + chr4_4:44084679-44084698 None:intergenic 40.0%
! TTGAGGTGCTTTCAACAAGA+AGG + chr4_4:44084781-44084800 None:intergenic 40.0%
AGCACCTCAATTGAACAACT+CGG - chr4_4:44084791-44084810 Msa0682460:intron 40.0%
CAAACCGAGTTGTTCAATTG+AGG + chr4_4:44084798-44084817 None:intergenic 40.0%
CTCAATTGAACAACTCGGTT+TGG - chr4_4:44084796-44084815 Msa0682460:intron 40.0%
TGCAGCATCAGCAATAATAG+TGG + chr4_4:44084852-44084871 None:intergenic 40.0%
TATTGCTGATGCTGCATCAA+AGG - chr4_4:44084856-44084875 Msa0682460:intron 40.0%
CAAAGGATGAGTTGCAATCT+AGG - chr4_4:44084873-44084892 Msa0682460:intron 40.0%
GACAGACTCAGTTTACGATT+CGG - chr4_4:44084925-44084944 Msa0682460:CDS 40.0%
! AGTTTACGATTCGGAGAAAC+TGG - chr4_4:44084934-44084953 Msa0682460:CDS 40.0%
AGACAATTTAGCGATCCTCT+CGG + chr4_4:44084960-44084979 None:intergenic 40.0%
AGGAACAATACCTTCCTCAA+TGG + chr4_4:44085080-44085099 None:intergenic 40.0%
!! ATTGAGGAAGGTATTGTTCC+TGG - chr4_4:44085079-44085098 Msa0682460:intron 40.0%
TGCTTATGTTCCAGCAATCA+AGG - chr4_4:44085129-44085148 Msa0682460:intron 40.0%
TCTAGTGTTTCCTTGATTGC+TGG + chr4_4:44085142-44085161 None:intergenic 40.0%
AGGAGCTGACATTGTTCAAA+AGG - chr4_4:44085180-44085199 Msa0682460:intron 40.0%
! TCAACATTTCCAGGGTATTC+TGG - chr4_4:44085401-44085420 Msa0682460:intron 40.0%
TAAGGTAAACCAGAATACCC+TGG + chr4_4:44085413-44085432 None:intergenic 40.0%
GCTCAAAATGCTGGAATAGA+AGG - chr4_4:44085778-44085797 Msa0682460:CDS 40.0%
GTTGTGGAGAAAATTAGGAG+TGG - chr4_4:44085808-44085827 Msa0682460:CDS 40.0%
! CTTAGGCTTTTCGACAACAA+TGG + chr4_4:44085974-44085993 None:intergenic 40.0%
! GTGAAGTGGGTTTAGGGTTT+GGG + chr4_4:44082162-44082181 None:intergenic 45.0%
! AGTGAAGTGGGTTTAGGGTT+TGG + chr4_4:44082163-44082182 None:intergenic 45.0%
! CAACGAAGTGAAGTGGGTTT+AGG + chr4_4:44082169-44082188 None:intergenic 45.0%
CGAAACTCAACGAAGTGAAG+TGG + chr4_4:44082176-44082195 None:intergenic 45.0%
CTTCGACACTCTTCCAAACA+TGG - chr4_4:44082233-44082252 Msa0682460:three_prime_UTR 45.0%
AGAACGGAGAATTGAGGTAG+AGG + chr4_4:44082277-44082296 None:intergenic 45.0%
!! TTACCTGGTTGGTAGGAGAA+CGG + chr4_4:44082293-44082312 None:intergenic 45.0%
! TGGTTAGTTACCTGGTTGGT+AGG + chr4_4:44082300-44082319 None:intergenic 45.0%
! AGGGGAAATGGTTAGTTACC+TGG + chr4_4:44082308-44082327 None:intergenic 45.0%
TTTCAGGCACAAACGAGTCT+TGG - chr4_4:44082402-44082421 Msa0682460:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr4_4:44083043-44083062 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr4_4:44083044-44083063 None:intergenic 45.0%
! CCAGCATTTTCCATAGCATC+AGG + chr4_4:44083400-44083419 None:intergenic 45.0%
CCTGATGCTATGGAAAATGC+TGG - chr4_4:44083397-44083416 Msa0682460:CDS 45.0%
! ATGCTGGTGCAGCTCTAATT+AGG - chr4_4:44083413-44083432 Msa0682460:CDS 45.0%
! TGCTGGTGCAGCTCTAATTA+GGG - chr4_4:44083414-44083433 Msa0682460:CDS 45.0%
ACTAATGACTCAGCTGGAGA+TGG - chr4_4:44083595-44083614 Msa0682460:intron 45.0%
CTAATGACTCAGCTGGAGAT+GGG - chr4_4:44083596-44083615 Msa0682460:intron 45.0%
! GACTACAACGGCTTCGATTT+TGG - chr4_4:44083618-44083637 Msa0682460:intron 45.0%
GCTCGGGAAATCATTAAGCT+TGG - chr4_4:44083640-44083659 Msa0682460:intron 45.0%
! TAAAACAGTAGCGGCTTTGG+TGG - chr4_4:44083717-44083736 Msa0682460:intron 45.0%
AAGAGCTAGAGAAGTTGGCT+AGG - chr4_4:44083740-44083759 Msa0682460:intron 45.0%
AAGTTGGCTAGGCCTGTTAA+AGG - chr4_4:44083751-44083770 Msa0682460:intron 45.0%
TCCGGCAGAAATAGAAGCAA+CGG + chr4_4:44083884-44083903 None:intergenic 45.0%
GATTGCTGAAGCAATTGGCA+AGG - chr4_4:44083927-44083946 Msa0682460:CDS 45.0%
AAACGAGGAGGAAGACTCAA+TGG + chr4_4:44083974-44083993 None:intergenic 45.0%
CATTCCTTCTTCGACTTCGA+CGG + chr4_4:44084004-44084023 None:intergenic 45.0%
! TGGAGGTATGAACTCTTTGC+TGG - chr4_4:44084022-44084041 Msa0682460:CDS 45.0%
! TGAGTGGTTTTCTCCAACAG+AGG + chr4_4:44084263-44084282 None:intergenic 45.0%
AGCCTCACCAGTGATATCTT+CGG + chr4_4:44084312-44084331 None:intergenic 45.0%
AGATATCACTGGTGAGGCTT+TGG - chr4_4:44084313-44084332 Msa0682460:intron 45.0%
! ACGCAGCTTGTTCACAACAA+GGG + chr4_4:44084342-44084361 None:intergenic 45.0%
! CTTTGATGGCAGCCACATTA+AGG + chr4_4:44084370-44084389 None:intergenic 45.0%
! ACCAAATCCTGGAGCTTTGA+TGG + chr4_4:44084384-44084403 None:intergenic 45.0%
ACAACAAAGAACCGATGGCA+AGG - chr4_4:44084665-44084684 Msa0682460:CDS 45.0%
TGGCAAGGAAACACAAGTTG+TGG - chr4_4:44084680-44084699 Msa0682460:CDS 45.0%
AACAAGAAGGCCCAAATCAC+TGG + chr4_4:44084768-44084787 None:intergenic 45.0%
TCGAAAAGTGACCATCTCCA+AGG - chr4_4:44084820-44084839 Msa0682460:intron 45.0%
AGTGGTAGAATCCTTGGAGA+TGG + chr4_4:44084834-44084853 None:intergenic 45.0%
GAGAGGATCGCTAAATTGTC+TGG - chr4_4:44084959-44084978 Msa0682460:CDS 45.0%
AGGATCGCTAAATTGTCTGG+TGG - chr4_4:44084962-44084981 Msa0682460:CDS 45.0%
GGCAGCAAAAGTTGCATTCT+TGG + chr4_4:44085059-44085078 None:intergenic 45.0%
! TGCAACTTTTGCTGCCATTG+AGG - chr4_4:44085063-44085082 Msa0682460:intron 45.0%
! ACTTTTGCTGCCATTGAGGA+AGG - chr4_4:44085067-44085086 Msa0682460:intron 45.0%
AATTAGGAGTGGTGAATGGG+AGG - chr4_4:44085819-44085838 Msa0682460:CDS 45.0%
CACACCTTGTTACCTTTGCA+GGG + chr4_4:44085903-44085922 None:intergenic 45.0%
! TTAAACGGTAAGGCCTTGTG+GGG + chr4_4:44086019-44086038 None:intergenic 45.0%
! CTTAAACGGTAAGGCCTTGT+GGG + chr4_4:44086020-44086039 None:intergenic 45.0%
ACTTAAACGGTAAGGCCTTG+TGG + chr4_4:44086021-44086040 None:intergenic 45.0%
!! TTTATTTATTTATATAAAGA+GGG + chr4_4:44083216-44083235 None:intergenic 5.0%
!! ATTTATTTATTTATATAAAG+AGG + chr4_4:44083217-44083236 None:intergenic 5.0%
!! TGGAAGAGTGTCGAAGAGTG+TGG + chr4_4:44082229-44082248 None:intergenic 50.0%
!! GCGTTGGTTGAAGCCATGTT+TGG + chr4_4:44082249-44082268 None:intergenic 50.0%
TGAGGTAGAGGATAGAGCGT+TGG + chr4_4:44082265-44082284 None:intergenic 50.0%
GGTAGGAGAACGGAGAATTG+AGG + chr4_4:44082283-44082302 None:intergenic 50.0%
ACAAACGAGTCTTGGCAGGA+AGG - chr4_4:44082410-44082429 Msa0682460:CDS 50.0%
ACGGCGTGAATCTTGGTCAA+AGG + chr4_4:44082511-44082530 None:intergenic 50.0%
CAATTCCAGCCTGCATAGCA+CGG + chr4_4:44082530-44082549 None:intergenic 50.0%
!! GATGCTGTTGGCCTTACTCT+CGG - chr4_4:44082561-44082580 Msa0682460:CDS 50.0%
GGATAAAATGCGGCCCTGTT+TGG - chr4_4:44082789-44082808 Msa0682460:intron 50.0%
!! ACTAAGTGGGGTTGGCTACA+TGG + chr4_4:44083031-44083050 None:intergenic 50.0%
ATGTAGCCAACCCCACTTAG+TGG - chr4_4:44083030-44083049 Msa0682460:intron 50.0%
TGTAGCCAACCCCACTTAGT+GGG - chr4_4:44083031-44083050 Msa0682460:intron 50.0%
CTTATCCCACTAAGTGGGGT+TGG + chr4_4:44083039-44083058 None:intergenic 50.0%
CAACCCCACTTAGTGGGATA+AGG - chr4_4:44083037-44083056 Msa0682460:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr4_4:44083045-44083064 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr4_4:44083042-44083061 Msa0682460:intron 50.0%
GGATGAGTTTGGCAGTCCTA+AGG - chr4_4:44083333-44083352 Msa0682460:CDS 50.0%
! TGGTGCAGCTCTAATTAGGG+AGG - chr4_4:44083417-44083436 Msa0682460:CDS 50.0%
AGCTGGAGATGGGACTACAA+CGG - chr4_4:44083606-44083625 Msa0682460:intron 50.0%
!!! CAACGGCTTCGATTTTGGCT+CGG - chr4_4:44083623-44083642 Msa0682460:intron 50.0%
!!! AACGGCTTCGATTTTGGCTC+GGG - chr4_4:44083624-44083643 Msa0682460:intron 50.0%
GGACTTCTCAGTGTGACATC+AGG - chr4_4:44083661-44083680 Msa0682460:intron 50.0%
GGTGGAAGAGCTAGAGAAGT+TGG - chr4_4:44083735-44083754 Msa0682460:intron 50.0%
TTGGCTAGGCCTGTTAAAGG+TGG - chr4_4:44083754-44083773 Msa0682460:intron 50.0%
!! GCCGTTGCTTCTATTTCTGC+CGG - chr4_4:44083880-44083899 Msa0682460:intron 50.0%
GCTGAAGCAATTGGCAAGGT+TGG - chr4_4:44083931-44083950 Msa0682460:CDS 50.0%
ATTGGCAAGGTTGGACCTGA+TGG - chr4_4:44083940-44083959 Msa0682460:CDS 50.0%
TTCGACGGTTGTCTCAAACG+AGG + chr4_4:44083989-44084008 None:intergenic 50.0%
ACAACCGTCGAAGTCGAAGA+AGG - chr4_4:44083997-44084016 Msa0682460:CDS 50.0%
CGTCGAAGTCGAAGAAGGAA+TGG - chr4_4:44084002-44084021 Msa0682460:CDS 50.0%
CGAAGTCGAAGAAGGAATGG+AGG - chr4_4:44084005-44084024 Msa0682460:CDS 50.0%
CAAAGGGGCTCTCAATTGAG+TGG + chr4_4:44084279-44084298 None:intergenic 50.0%
TGCCGAAGATATCACTGGTG+AGG - chr4_4:44084307-44084326 Msa0682460:intron 50.0%
! CACGCAGCTTGTTCACAACA+AGG + chr4_4:44084343-44084362 None:intergenic 50.0%
! CTTGTTGTGAACAAGCTGCG+TGG - chr4_4:44084341-44084360 Msa0682460:CDS 50.0%
GCTGCGTGGTATCCTTAATG+TGG - chr4_4:44084355-44084374 Msa0682460:CDS 50.0%
GCCATCAAAGCTCCAGGATT+TGG - chr4_4:44084380-44084399 Msa0682460:CDS 50.0%
TGAGTTCCAGGCCAGTGATT+TGG - chr4_4:44084754-44084773 Msa0682460:CDS 50.0%
GAGTTCCAGGCCAGTGATTT+GGG - chr4_4:44084755-44084774 Msa0682460:CDS 50.0%
TGGTGGAGTTGCAGTCATCA+AGG - chr4_4:44084979-44084998 Msa0682460:CDS 50.0%
GGAGTTGCAGTCATCAAGGT+CGG - chr4_4:44084983-44085002 Msa0682460:CDS 50.0%
TGCTACAGAGACCGAACTTG+AGG - chr4_4:44085009-44085028 Msa0682460:CDS 50.0%
!! GAGGAAGGTATTGTTCCTGG+AGG - chr4_4:44085082-44085101 Msa0682460:intron 50.0%
!! GAAGGTATTGTTCCTGGAGG+AGG - chr4_4:44085085-44085104 Msa0682460:intron 50.0%
CACTAGAAGACGCAGATGAG+AGG - chr4_4:44085155-44085174 Msa0682460:intron 50.0%
TCGACCCTGCAAAGGTAACA+AGG - chr4_4:44085896-44085915 Msa0682460:CDS 50.0%
GCACACCTTGTTACCTTTGC+AGG + chr4_4:44085904-44085923 None:intergenic 50.0%
! TCTGCAGAATGCTGCTTCAG+TGG - chr4_4:44085924-44085943 Msa0682460:CDS 50.0%
! AGAATGCTGCTTCAGTGGCT+GGG - chr4_4:44085929-44085948 Msa0682460:CDS 50.0%
TTCGACAACAATGGCCTGTG+TGG + chr4_4:44085965-44085984 None:intergenic 50.0%
TTGTCGAAAAGCCTAAGCCC+AGG - chr4_4:44085977-44085996 Msa0682460:intron 50.0%
TGTCGAAAAGCCTAAGCCCA+GGG - chr4_4:44085978-44085997 Msa0682460:intron 50.0%
TCTCCGTTCTCCTACCAACC+AGG - chr4_4:44082287-44082306 Msa0682460:three_prime_UTR 55.0%
AGGCACAAACGAGTCTTGGC+AGG - chr4_4:44082406-44082425 Msa0682460:CDS 55.0%
GCATAGCACGGCGTGAATCT+TGG + chr4_4:44082518-44082537 None:intergenic 55.0%
AGATTCACGCCGTGCTATGC+AGG - chr4_4:44082518-44082537 Msa0682460:CDS 55.0%
GACGGTTGTCTCAAACGAGG+AGG + chr4_4:44083986-44084005 None:intergenic 55.0%
!! ACTGCTAGGTGCTGAGTTCC+AGG - chr4_4:44084742-44084761 Msa0682460:CDS 55.0%
ATTCGGAGAAACTGGCCGAG+AGG - chr4_4:44084942-44084961 Msa0682460:CDS 55.0%
!! TCCTGGAGGAGGTACTGCAT+TGG - chr4_4:44085096-44085115 Msa0682460:intron 55.0%
ACCAATGCAGTACCTCCTCC+AGG + chr4_4:44085100-44085119 None:intergenic 55.0%
GAAGACGCAGATGAGAGGCT+AGG - chr4_4:44085160-44085179 Msa0682460:intron 55.0%
AGGAGTGGTGAATGGGAGGT+TGG - chr4_4:44085823-44085842 Msa0682460:CDS 55.0%
CTTTGCAGGGTCGATGACTC+CGG + chr4_4:44085890-44085909 None:intergenic 55.0%
! CAGAATGCTGCTTCAGTGGC+TGG - chr4_4:44085928-44085947 Msa0682460:CDS 55.0%
! TGGGATGGTCTTGACCACAC+AGG - chr4_4:44085948-44085967 Msa0682460:intron 55.0%
GCAGGAAGGCGAGCCAACAT+GGG - chr4_4:44082424-44082443 Msa0682460:CDS 60.0%
GAAGGCGAGCCAACATGGGA+GGG - chr4_4:44082428-44082447 Msa0682460:CDS 60.0%
TACCTCGGGGTCCGAGAGTA+AGG + chr4_4:44082575-44082594 None:intergenic 60.0%
GTGGCTGCCATCAAAGCTCC+AGG - chr4_4:44084374-44084393 Msa0682460:CDS 60.0%
GAAGGCCCAAATCACTGGCC+TGG + chr4_4:44084763-44084782 None:intergenic 60.0%
CGGAGTCATCGACCCTGCAA+AGG - chr4_4:44085888-44085907 Msa0682460:CDS 60.0%
! TGCTGCTTCAGTGGCTGGGA+TGG - chr4_4:44085933-44085952 Msa0682460:CDS 60.0%
GAAAAGCCTAAGCCCAGGGC+AGG - chr4_4:44085982-44086001 Msa0682460:intron 60.0%
GGCAGGAAGGCGAGCCAACA+TGG - chr4_4:44082423-44082442 Msa0682460:CDS 65.0%
GGAAGGCGAGCCAACATGGG+AGG - chr4_4:44082427-44082446 Msa0682460:CDS 65.0%
TCACGCCGTGCTATGCAGGC+TGG - chr4_4:44082522-44082541 Msa0682460:CDS 65.0%
GGCCTTACTCTCGGACCCCG+AGG - chr4_4:44082570-44082589 Msa0682460:CDS 70.0%
GCCTAAGCCCAGGGCAGGTG+TGG - chr4_4:44085987-44086006 Msa0682460:intron 70.0%
GCCACACCTGCCCTGGGCTT+AGG + chr4_4:44085991-44086010 None:intergenic 70.0%
GCAGCAGCCACACCTGCCCT+GGG + chr4_4:44085997-44086016 None:intergenic 70.0%
GGTGTGGCTGCTGCCCCACA+AGG - chr4_4:44086003-44086022 Msa0682460:intron 70.0%
GGCAGCAGCCACACCTGCCC+TGG + chr4_4:44085998-44086017 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 44082077 44086283 44082077 ID=Msa0682460;Name=Msa0682460
chr4_4 mRNA 44082077 44086283 44082077 ID=Msa0682460-mRNA-1;Parent=Msa0682460;Name=Msa0682460-mRNA-1;_AED=0.07;_eAED=0.07;_QI=175|1|1|1|1|1|8|245|587
chr4_4 exon 44082077 44082609 44082077 ID=Msa0682460-mRNA-1:exon:10663;Parent=Msa0682460-mRNA-1
chr4_4 exon 44083159 44083610 44083159 ID=Msa0682460-mRNA-1:exon:10662;Parent=Msa0682460-mRNA-1
chr4_4 exon 44083914 44084220 44083914 ID=Msa0682460-mRNA-1:exon:10661;Parent=Msa0682460-mRNA-1
chr4_4 exon 44084334 44084479 44084334 ID=Msa0682460-mRNA-1:exon:10660;Parent=Msa0682460-mRNA-1
chr4_4 exon 44084570 44084777 44084570 ID=Msa0682460-mRNA-1:exon:10659;Parent=Msa0682460-mRNA-1
chr4_4 exon 44084922 44085043 44084922 ID=Msa0682460-mRNA-1:exon:10658;Parent=Msa0682460-mRNA-1
chr4_4 exon 44085769 44085952 44085769 ID=Msa0682460-mRNA-1:exon:10657;Parent=Msa0682460-mRNA-1
chr4_4 exon 44086052 44086283 44086052 ID=Msa0682460-mRNA-1:exon:10656;Parent=Msa0682460-mRNA-1
chr4_4 five_prime_UTR 44086109 44086283 44086109 ID=Msa0682460-mRNA-1:five_prime_utr;Parent=Msa0682460-mRNA-1
chr4_4 CDS 44086052 44086108 44086052 ID=Msa0682460-mRNA-1:cds;Parent=Msa0682460-mRNA-1
chr4_4 CDS 44085769 44085952 44085769 ID=Msa0682460-mRNA-1:cds;Parent=Msa0682460-mRNA-1
chr4_4 CDS 44084922 44085043 44084922 ID=Msa0682460-mRNA-1:cds;Parent=Msa0682460-mRNA-1
chr4_4 CDS 44084570 44084777 44084570 ID=Msa0682460-mRNA-1:cds;Parent=Msa0682460-mRNA-1
chr4_4 CDS 44084334 44084479 44084334 ID=Msa0682460-mRNA-1:cds;Parent=Msa0682460-mRNA-1
chr4_4 CDS 44083914 44084220 44083914 ID=Msa0682460-mRNA-1:cds;Parent=Msa0682460-mRNA-1
chr4_4 CDS 44083159 44083610 44083159 ID=Msa0682460-mRNA-1:cds;Parent=Msa0682460-mRNA-1
chr4_4 CDS 44082322 44082609 44082322 ID=Msa0682460-mRNA-1:cds;Parent=Msa0682460-mRNA-1
chr4_4 three_prime_UTR 44082077 44082321 44082077 ID=Msa0682460-mRNA-1:three_prime_utr;Parent=Msa0682460-mRNA-1
Gene Sequence

>Msa0682460

ATGGCTTCAACCAACGCTCTATCCTCTACCTCAATTCTCCGTTCTCCTACCAACCAGGCACAAACGAGTCTTGGCAGGAAGGCGAGCCAACATGGGAGGGTTAATTACAGACAGAAAGTTAACCGTTTTGTGGTTAAAGCAAGTGCTAAAGATATTGCCTTTGACCAAGATTCACGCCGTGCTATGCAGGCTGGAATTGATAAACTTGCTGATGCTGTTGGCCTTACTCTCGGACCCCGAGGGAGGAATGTTGTTTTGGATGAGTTTGGCAGTCCTAAGGTTGTAAACGATGGTGTGACAATTGCAAGAGCTATTGAGTTACCTGATGCTATGGAAAATGCTGGTGCAGCTCTAATTAGGGAGGTTGCTAGTAAAACTAATGACTCAGCTGGAGATGGGACTACAACGGCTTCGATTTTGGCTCGGGAAATCATTAAGCTTGGACTTCTCAGTGTGACATCAGGTGCCAATCCTGTATCCATCAAGAAAGGAATTGATAAAACAGTAGCGGCTTTGGTGGAAGAGCTAGAGAAGTTGGCTAGGCCTGTTAAAGGTGGAGATGATATAAAAGCCGTTGCTTCTATTTCTGCCGGAAATGATGAGTTAATTGGAACAATGATTGCTGAAGCAATTGGCAAGGTTGGACCTGATGGTGTTTTATCCATTGAGTCTTCCTCCTCGTTTGAGACAACCGTCGAAGTCGAAGAAGGAATGGAGATTGACAGAGGCTATATCTCTCCCCAATTTGTTACAAATCTTGAGAAATCAATTGTTGAATTTGAGAATGCTAGAGTCTTGATTACCGACCAAAAGATTTCTGCAATAAAAGATATAATTCCTCTGTTGGAGAAAACCACTCAATTGAGAGCCCCTTTGCTTATCATTGCCGAAGATATCACTGGTGAGGCTTTGGCTACCCTTGTTGTGAACAAGCTGCGTGGTATCCTTAATGTGGCTGCCATCAAAGCTCCAGGATTTGGTGAGAGAAGAAAGGCCCTCCTTCAAGACATTGCAATATTGACAGGTGCTGAGTTCCAGGCCAGTGATTTGGGCCTTCTTGTTGAAAGCACCTCAATTGAACAACTCGGTTTGGCTCGAAAAGTGACCATCTCCAAGGATTCTACCACTATTATTGCTGATGCTGCATCAAAGGATGAGTTGCAATCTAGGGTTGCACAACTGAAGAAAGAGTTGTTTGAGACAGACTCAGTTTACGATTCGGAGAAACTGGCCGAGAGGATCGCTAAATTGTCTGGTGGAGTTGCAGTCATCAAGGTCGGTGCTGCTACAGAGACCGAACTTGAGGATCGTAAACTTAGAATTGAGGATGCCAAGAATGCAACTTTTGCTGCCATTGAGGAAGGTATTGTTCCTGGAGGAGGTACTGCATTGGTTCATCTCTCTGCTTATGTTCCAGCAATCAAGGAAACACTAGAAGACGCAGATGAGAGGCTAGGAGCTGACATTGTTCAAAAGGCATTGGTAGCACCTGCATCATTGATTGCTCAAAATGCTGGAATAGAAGGTGAAGTAGTTGTGGAGAAAATTAGGAGTGGTGAATGGGAGGTTGGTTACAATGCCATGACAGACACTTATGAGAATTTAATTGACTCCGGAGTCATCGACCCTGCAAAGGTAACAAGGTGTGCTCTGCAGAATGCTGCTTCAGTGGCTGGGATGGTCTTGACCACACAGGCCATTGTTGTCGAAAAGCCTAAGCCCAGGGCAGGTGTGGCTGCTGCCCCACAAGGCCTTACCGTTTAA

Protein sequence

>Msa0682460

MASTNALSSTSILRSPTNQAQTSLGRKASQHGRVNYRQKVNRFVVKASAKDIAFDQDSRRAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLSVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVASISAGNDELIGTMIAEAIGKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNLEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDITGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVESTSIEQLGLARKVTISKDSTTIIADAASKDELQSRVAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSAYVPAIKETLEDADERLGADIVQKALVAPASLIAQNAGIEGEVVVEKIRSGEWEVGYNAMTDTYENLIDSGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPRAGVAAAPQGLTV*