Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767520 | sp|F4I0K2|SCKL2_ARATH | 57.956 | 597 | 212 | 11 | 1 | 577 | 1 | 578 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767520 | G7JY18 | 94.340 | 583 | 28 | 2 | 1 | 583 | 1 | 578 | 0.0 | 1050 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0767520 | 0.802490 | 5.472417e-49 | -8.615850e-47 |
| Msa0026110 | Msa0767520 | 0.818341 | 2.061952e-52 | -8.615850e-47 |
| Msa0032120 | Msa0767520 | 0.807723 | 4.396230e-50 | -8.615850e-47 |
| Msa0032400 | Msa0767520 | 0.800084 | 1.701105e-48 | -8.615850e-47 |
| Msa0056520 | Msa0767520 | 0.866939 | 1.974663e-65 | -8.615850e-47 |
| Msa0056690 | Msa0767520 | 0.870913 | 1.018676e-66 | -8.615850e-47 |
| Msa0639370 | Msa0767520 | 0.856008 | 4.299294e-62 | -8.615850e-47 |
| Msa0661240 | Msa0767520 | 0.862417 | 5.143150e-64 | -8.615850e-47 |
| Msa0661470 | Msa0767520 | 0.816711 | 4.804154e-52 | -8.615850e-47 |
| Msa0727170 | Msa0767520 | 0.879608 | 1.084640e-69 | -8.615850e-47 |
| Msa0728280 | Msa0767520 | 0.816218 | 6.192896e-52 | -8.615850e-47 |
| Msa0728380 | Msa0767520 | 0.808493 | 3.014173e-50 | -8.615850e-47 |
| Msa0728540 | Msa0767520 | 0.817035 | 4.063985e-52 | -8.615850e-47 |
| Msa0756470 | Msa0767520 | 0.829928 | 3.910884e-55 | -8.615850e-47 |
| Msa0767520 | Msa0776480 | 0.821600 | 3.704285e-53 | -8.615850e-47 |
| Msa0767520 | Msa0835520 | 0.860133 | 2.554389e-63 | -8.615850e-47 |
| Msa0767520 | Msa0847100 | 0.880418 | 5.581425e-70 | -8.615850e-47 |
| Msa0767520 | Msa0880220 | 0.802629 | 5.123956e-49 | -8.615850e-47 |
| Msa0767520 | Msa0950320 | 0.803221 | 3.865526e-49 | -8.615850e-47 |
| Msa0767520 | Msa1032300 | 0.807117 | 5.912198e-50 | -8.615850e-47 |
| Msa0767520 | Msa1072340 | 0.818258 | 2.153368e-52 | -8.615850e-47 |
| Msa0767520 | Msa1111630 | 0.805480 | 1.308197e-49 | -8.615850e-47 |
| Msa0767520 | Msa1177240 | 0.857142 | 1.996141e-62 | -8.615850e-47 |
| Msa0767520 | Msa1188940 | 0.805808 | 1.116524e-49 | -8.615850e-47 |
| Msa0767520 | Msa1235150 | 0.854347 | 1.307303e-61 | -8.615850e-47 |
| Msa0767520 | Msa1272210 | 0.818779 | 1.640254e-52 | -8.615850e-47 |
| Msa0767520 | Msa1309960 | 0.824159 | 9.389331e-54 | -8.615850e-47 |
| Msa0767520 | Msa1317030 | 0.856487 | 3.112144e-62 | -8.615850e-47 |
| Msa0767520 | Msa1324000 | 0.803661 | 3.133363e-49 | -8.615850e-47 |
| Msa0767520 | Msa1375340 | 0.804345 | 2.259001e-49 | -8.615850e-47 |
| Msa0767520 | Msa1388240 | 0.811857 | 5.676438e-51 | -8.615850e-47 |
| Msa0767520 | Msa1398480 | 0.807558 | 4.765706e-50 | -8.615850e-47 |
| Msa0767520 | Msa1438360 | 0.817796 | 2.738729e-52 | -8.615850e-47 |
| Msa0767520 | Msa1447300 | 0.871340 | 7.366004e-67 | -8.615850e-47 |
| Msa0767520 | Msa1460440 | 0.872983 | 2.090397e-67 | -8.615850e-47 |
| Msa0121800 | Msa0767520 | 0.834460 | 2.959656e-56 | -8.615850e-47 |
| Msa0166570 | Msa0767520 | 0.841037 | 6.057177e-58 | -8.615850e-47 |
| Msa0185700 | Msa0767520 | 0.806336 | 8.641385e-50 | -8.615850e-47 |
| Msa0378080 | Msa0767520 | 0.801606 | 8.317607e-49 | -8.615850e-47 |
| Msa0384430 | Msa0767520 | 0.858368 | 8.643854e-63 | -8.615850e-47 |
| Msa0390060 | Msa0767520 | 0.868775 | 5.081326e-66 | -8.615850e-47 |
| Msa0392210 | Msa0767520 | 0.808240 | 3.413282e-50 | -8.615850e-47 |
| Msa0436090 | Msa0767520 | 0.817575 | 3.071385e-52 | -8.615850e-47 |
| Msa0468160 | Msa0767520 | 0.812338 | 4.457869e-51 | -8.615850e-47 |
| Msa0470180 | Msa0767520 | 0.803996 | 2.670182e-49 | -8.615850e-47 |
| Msa0349060 | Msa0767520 | 0.814063 | 1.863884e-51 | -8.615850e-47 |
| Msa0358170 | Msa0767520 | 0.810800 | 9.626881e-51 | -8.615850e-47 |
| Msa0487770 | Msa0767520 | 0.813920 | 2.004419e-51 | -8.615850e-47 |
| Msa0506760 | Msa0767520 | 0.810928 | 9.029685e-51 | -8.615850e-47 |
| Msa0518040 | Msa0767520 | 0.802630 | 5.120891e-49 | -8.615850e-47 |
| Msa0522660 | Msa0767520 | 0.864845 | 9.066990e-65 | -8.615850e-47 |
| Msa0546840 | Msa0767520 | 0.822913 | 1.836926e-53 | -8.615850e-47 |
| Msa0583740 | Msa0767520 | 0.855646 | 5.487086e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767520 | MtrunA17_Chr5g0419371 | 94.340 | 583 | 28 | 2 | 1 | 583 | 1 | 578 | 0.0 | 1050 |
| Msa0767520 | MtrunA17_Chr4g0008441 | 44.072 | 388 | 191 | 6 | 193 | 565 | 81 | 457 | 1.37e-110 | 338 |
| Msa0767520 | MtrunA17_Chr1g0188291 | 31.034 | 348 | 201 | 5 | 214 | 558 | 7 | 318 | 2.27e-50 | 176 |
| Msa0767520 | MtrunA17_Chr4g0033631 | 30.925 | 346 | 200 | 6 | 215 | 557 | 15 | 324 | 3.04e-49 | 174 |
| Msa0767520 | MtrunA17_Chr2g0329451 | 32.362 | 309 | 184 | 5 | 255 | 560 | 40 | 326 | 3.13e-49 | 174 |
| Msa0767520 | MtrunA17_Chr1g0204101 | 29.942 | 344 | 204 | 5 | 215 | 555 | 23 | 332 | 7.25e-48 | 170 |
| Msa0767520 | MtrunA17_Chr6g0474331 | 29.859 | 355 | 212 | 6 | 204 | 555 | 17 | 337 | 1.03e-47 | 170 |
| Msa0767520 | MtrunA17_Chr5g0434971 | 31.014 | 345 | 200 | 7 | 214 | 555 | 66 | 375 | 6.33e-44 | 160 |
| Msa0767520 | MtrunA17_Chr1g0171921 | 27.036 | 307 | 199 | 3 | 257 | 557 | 206 | 493 | 8.30e-35 | 138 |
| Msa0767520 | MtrunA17_Chr1g0177771 | 28.289 | 304 | 186 | 6 | 257 | 557 | 276 | 550 | 1.47e-32 | 132 |
| Msa0767520 | MtrunA17_Chr1g0177321 | 28.618 | 304 | 176 | 6 | 257 | 557 | 202 | 467 | 7.40e-31 | 125 |
| Msa0767520 | MtrunA17_Chr1g0183241 | 27.018 | 285 | 186 | 6 | 273 | 555 | 134 | 398 | 1.61e-28 | 118 |
| Msa0767520 | MtrunA17_Chr1g0183661 | 26.552 | 290 | 176 | 8 | 255 | 540 | 14 | 270 | 5.38e-28 | 114 |
| Msa0767520 | MtrunA17_Chr7g0246421 | 30.319 | 188 | 112 | 3 | 351 | 538 | 2 | 170 | 6.09e-24 | 99.8 |
| Msa0767520 | MtrunA17_Chr4g0020911 | 26.816 | 179 | 111 | 3 | 338 | 516 | 44 | 202 | 4.74e-16 | 77.0 |
| Msa0767520 | MtrunA17_Chr1g0176221 | 34.091 | 88 | 58 | 0 | 339 | 426 | 35 | 122 | 2.43e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767520 | AT1G69200.1 | 57.956 | 597 | 212 | 11 | 1 | 577 | 1 | 578 | 0.0 | 652 |
| Msa0767520 | AT3G54090.1 | 42.857 | 399 | 212 | 5 | 182 | 565 | 69 | 466 | 5.10e-106 | 327 |
| Msa0767520 | AT5G51830.2 | 30.899 | 356 | 209 | 5 | 208 | 560 | 16 | 337 | 2.94e-51 | 180 |
| Msa0767520 | AT5G51830.1 | 30.899 | 356 | 209 | 5 | 208 | 560 | 16 | 337 | 2.94e-51 | 180 |
| Msa0767520 | AT2G31390.1 | 32.845 | 341 | 190 | 7 | 215 | 552 | 9 | 313 | 1.02e-49 | 175 |
| Msa0767520 | AT3G59480.1 | 30.447 | 358 | 210 | 7 | 206 | 560 | 1 | 322 | 6.28e-49 | 173 |
| Msa0767520 | AT4G10260.1 | 31.143 | 350 | 202 | 6 | 214 | 560 | 5 | 318 | 2.93e-48 | 171 |
| Msa0767520 | AT1G06030.1 | 30.792 | 341 | 197 | 6 | 215 | 552 | 11 | 315 | 2.67e-47 | 169 |
| Msa0767520 | AT1G06020.1 | 31.894 | 301 | 180 | 5 | 255 | 552 | 36 | 314 | 6.65e-47 | 168 |
| Msa0767520 | AT1G66430.1 | 30.372 | 349 | 205 | 7 | 214 | 559 | 64 | 377 | 6.79e-47 | 169 |
Find 147 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGATTGCAAAGCATTT+TGG | 0.178739 | 5_2:+30940625 | Msa0767520:CDS |
| CGGTCAGCATTGATAGTAAA+AGG | 0.213176 | 5_2:+30939295 | Msa0767520:CDS |
| CCTCCTCTTGTTTGTTGCTT+TGG | 0.218528 | 5_2:+30939018 | Msa0767520:CDS |
| CTCATCTATGTCACCGATTT+CGG | 0.231562 | 5_2:-30938902 | None:intergenic |
| TCACGAGTGAAAGGGGTAAT+TGG | 0.237851 | 5_2:-30940973 | None:intergenic |
| TCCTCTTTATTCTCCTCTTT+AGG | 0.276483 | 5_2:-30938844 | None:intergenic |
| AGGTTATTGTATCTAACTTT+TGG | 0.286225 | 5_2:+30941896 | Msa0767520:three_prime_UTR |
| TGCATCTAGTTCTGCTGCTT+TGG | 0.313717 | 5_2:+30938771 | Msa0767520:CDS |
| GAGAAATTTGTTAGGGCTCC+TGG | 0.317093 | 5_2:+30939138 | Msa0767520:CDS |
| GGAAGAAGAGAAAGAAGTTA+AGG | 0.324640 | 5_2:+30938792 | Msa0767520:CDS |
| CCTTTATCAGTTATCAAATC+AGG | 0.336586 | 5_2:-30941552 | None:intergenic |
| CCTGATTTGATAACTGATAA+AGG | 0.337736 | 5_2:+30941552 | Msa0767520:CDS |
| CACGAGTGAAAGGGGTAATT+GGG | 0.354164 | 5_2:-30940972 | None:intergenic |
| TAACCTAACAACTAAGTCTA+AGG | 0.360996 | 5_2:-30941879 | None:intergenic |
| GAGAGGTTAGTGTTCTGTTT+AGG | 0.361117 | 5_2:-30937978 | None:intergenic |
| TTGCCTTAGACTTAGTTGTT+AGG | 0.362433 | 5_2:+30941876 | Msa0767520:three_prime_UTR |
| ATAAAATGCGTATAACAAAT+TGG | 0.367589 | 5_2:-30941924 | None:intergenic |
| AAACTTGCAGATGATGAATA+TGG | 0.370202 | 5_2:+30939225 | Msa0767520:CDS |
| TATCACCTGGTTCAACTAAC+TGG | 0.371257 | 5_2:-30941741 | None:intergenic |
| CACTGATGAAGATTGGTAAA+AGG | 0.375060 | 5_2:+30939331 | Msa0767520:CDS |
| GGAGCCCTGAGAAATTTGTT+AGG | 0.379308 | 5_2:+30939130 | Msa0767520:CDS |
| GACATTACTCCTGATCCTTA+TGG | 0.380425 | 5_2:+30941675 | Msa0767520:CDS |
| CTTTCCTCCGCAGGAAGATA+TGG | 0.391445 | 5_2:+30941650 | Msa0767520:CDS |
| TCTGGAGACGGCATTGTTGC+AGG | 0.393744 | 5_2:+30941006 | Msa0767520:CDS |
| AGAAATTTGTTAGGGCTCCT+GGG | 0.394154 | 5_2:+30939139 | Msa0767520:CDS |
| AACAAATCAATTGTCCCTTC+TGG | 0.394435 | 5_2:-30938562 | None:intergenic |
| AGAAGGGACAATTGATTTGT+TGG | 0.395531 | 5_2:+30938564 | Msa0767520:CDS |
| TAAACCTTCCTATGCCACTA+TGG | 0.397175 | 5_2:+30940668 | Msa0767520:CDS |
| CTCACTTTCTTCCACTTCCC+AGG | 0.409532 | 5_2:+30938043 | Msa0767520:CDS |
| AGCTATCATGCGAATGTTGA+CGG | 0.413638 | 5_2:+30941524 | Msa0767520:intron |
| GGAGCCCTAACAAATTTCTC+AGG | 0.414232 | 5_2:-30939135 | None:intergenic |
| TCATAACAATTGAAATTTCA+AGG | 0.418797 | 5_2:-30941948 | None:intergenic |
| ATCAATTATGCAATTGATTG+TGG | 0.426364 | 5_2:+30941591 | Msa0767520:CDS |
| ACTATGGCACGAAAATCTTA+AGG | 0.427317 | 5_2:+30940867 | Msa0767520:CDS |
| GATAGTGCTTCTATTGTAGA+AGG | 0.432468 | 5_2:+30938595 | Msa0767520:CDS |
| GGATGAGACTGACGATGGTT+TGG | 0.435291 | 5_2:+30938948 | Msa0767520:CDS |
| ACTCGTGACATGTCAGCATC+TGG | 0.448444 | 5_2:+30940988 | Msa0767520:CDS |
| GTGAAGTAGTTGCACCACTA+TGG | 0.456163 | 5_2:+30940851 | Msa0767520:CDS |
| CTTCAGGTAGGCCTGCCAAT+AGG | 0.463718 | 5_2:+30939064 | Msa0767520:CDS |
| AGCTCGATGGTGCTGTTAGC+GGG | 0.465873 | 5_2:+30940938 | Msa0767520:CDS |
| CTATGAATGTAGTTCAACTT+GGG | 0.465900 | 5_2:+30938359 | Msa0767520:CDS |
| ACTATCAATGCTGACCGATC+GGG | 0.466215 | 5_2:-30939289 | None:intergenic |
| TCAATTATGCAATTGATTGT+GGG | 0.468316 | 5_2:+30941592 | Msa0767520:CDS |
| TACTATCAATGCTGACCGAT+CGG | 0.468391 | 5_2:-30939290 | None:intergenic |
| GACTGACGATGGTTTGGATC+TGG | 0.473146 | 5_2:+30938954 | Msa0767520:CDS |
| TTCATGATCTATAAGCCTAT+TGG | 0.479296 | 5_2:-30939079 | None:intergenic |
| TGTGGTGTAGTAATGTATCT+TGG | 0.479747 | 5_2:-30940914 | None:intergenic |
| GCCATTGCTCTTGCTAGTCT+AGG | 0.481898 | 5_2:+30939180 | Msa0767520:CDS |
| AGAAGTTGAGTTACAAAGAG+AGG | 0.483524 | 5_2:-30937995 | None:intergenic |
| TTGGTGTCAAATTCTTCAGA+TGG | 0.483845 | 5_2:-30940793 | None:intergenic |
| TCTATGAATGTAGTTCAACT+TGG | 0.484359 | 5_2:+30938358 | Msa0767520:CDS |
| TGTCAAACAATCTTCAGCAC+AGG | 0.492667 | 5_2:-30939379 | None:intergenic |
| CAACTACTTCACGTTCGTAA+TGG | 0.493443 | 5_2:-30940840 | None:intergenic |
| ATCACACTTAACATAGTAGC+AGG | 0.496058 | 5_2:-30937954 | None:intergenic |
| GAGCCCTGAGAAATTTGTTA+GGG | 0.499725 | 5_2:+30939131 | Msa0767520:CDS |
| GGTGGTGGTGAAGCCGAAAT+CGG | 0.500614 | 5_2:+30938889 | Msa0767520:CDS |
| GGGCATCCTTCATGCTTTCG+TGG | 0.501611 | 5_2:-30939104 | None:intergenic |
| TAAGGCATCTAAACATAAGA+AGG | 0.507071 | 5_2:+30938498 | Msa0767520:CDS |
| AGTACGTGGCTTTCCTCCGC+AGG | 0.509991 | 5_2:+30941641 | Msa0767520:CDS |
| TATAAAGGGTACCTGGGAAG+TGG | 0.511209 | 5_2:-30938054 | None:intergenic |
| GGTGTCTCACTGATGAAGAT+TGG | 0.511624 | 5_2:+30939324 | Msa0767520:CDS |
| ATTGATAGTAAAAGGGCTAC+AGG | 0.515434 | 5_2:+30939303 | Msa0767520:CDS |
| CATAATTGATGCTATGCTCT+AGG | 0.515807 | 5_2:-30941578 | None:intergenic |
| GAATCATCATCAGAGGGAGA+TGG | 0.516551 | 5_2:-30938619 | None:intergenic |
| GGTGGAAAAGAAAGTAACTA+AGG | 0.517432 | 5_2:+30938480 | Msa0767520:CDS |
| GAAATTTGTTAGGGCTCCTG+GGG | 0.518314 | 5_2:+30939140 | Msa0767520:CDS |
| AAAGCATGAAGGATGCCCTC+TGG | 0.519622 | 5_2:+30939109 | Msa0767520:CDS |
| TCTTCCTGAGAGTGCCATAG+TGG | 0.525516 | 5_2:-30940682 | None:intergenic |
| AATCATCATCAGAGGGAGAT+GGG | 0.526276 | 5_2:-30938618 | None:intergenic |
| GTCTTCCTTTATTGAAAATG+TGG | 0.526297 | 5_2:+30938924 | Msa0767520:CDS |
| TATGCCACTATGGCACTCTC+AGG | 0.527107 | 5_2:+30940678 | Msa0767520:CDS |
| CATAACAATTGAAATTTCAA+GGG | 0.533566 | 5_2:-30941947 | None:intergenic |
| CGATGGTGCTGTTAGCGGGA+TGG | 0.537947 | 5_2:+30940942 | Msa0767520:CDS |
| ATTGTGGGGTAATAGATCAA+TGG | 0.539254 | 5_2:+30941607 | Msa0767520:CDS |
| AATTGTCCCTTCTGGAGACT+CGG | 0.539534 | 5_2:-30938554 | None:intergenic |
| TCTTGCTAGTCTAGGTGGCA+AGG | 0.541756 | 5_2:+30939188 | Msa0767520:CDS |
| TTCTTAGAATCATCATCAGA+GGG | 0.544165 | 5_2:-30938625 | None:intergenic |
| TGAGAGTGCCATAGTGGCAT+AGG | 0.545969 | 5_2:-30940676 | None:intergenic |
| TGGATCTCATGTGACGATCA+AGG | 0.546279 | 5_2:-30940588 | None:intergenic |
| GTAATAGATCAATGGATACT+TGG | 0.547151 | 5_2:+30941615 | Msa0767520:CDS |
| AAATATTGACGTGTTGAAAG+AGG | 0.554016 | 5_2:+30939413 | Msa0767520:CDS |
| GCTGACATGTCACGAGTGAA+AGG | 0.554856 | 5_2:-30940982 | None:intergenic |
| TTCCTTTATTGAAAATGTGG+AGG | 0.558662 | 5_2:+30938927 | Msa0767520:CDS |
| CTGACATGTCACGAGTGAAA+GGG | 0.562056 | 5_2:-30940981 | None:intergenic |
| CTTCTTAGAATCATCATCAG+AGG | 0.566475 | 5_2:-30938626 | None:intergenic |
| GGTCAGCATTGATAGTAAAA+GGG | 0.566795 | 5_2:+30939296 | Msa0767520:CDS |
| GAGCTCGATGGTGCTGTTAG+CGG | 0.567047 | 5_2:+30940937 | Msa0767520:CDS |
| CAATTATGCAATTGATTGTG+GGG | 0.567540 | 5_2:+30941593 | Msa0767520:CDS |
| AAGAGCAATGGCAACACTAC+CGG | 0.568293 | 5_2:-30939169 | None:intergenic |
| TAAATCTAGTCATGTTGCAA+TGG | 0.572727 | 5_2:+30938399 | Msa0767520:CDS |
| ACCTAAAGAGGAGAATAAAG+AGG | 0.575238 | 5_2:+30938843 | Msa0767520:CDS |
| AAGTGGAAGAAAGTGAGCAA+GGG | 0.575285 | 5_2:-30938037 | None:intergenic |
| TAGAGCCAGTTAGTTGAACC+AGG | 0.575401 | 5_2:+30941736 | Msa0767520:exon |
| GTGTTACTCGGTGTATCACC+TGG | 0.576539 | 5_2:-30941754 | None:intergenic |
| TGTGCAGGTGTAACTTGACT+TGG | 0.580944 | 5_2:+30938320 | Msa0767520:intron |
| CTAGTCATGTTGCAATGGCT+AGG | 0.582018 | 5_2:+30938404 | Msa0767520:CDS |
| TGATCTATAAGCCTATTGGC+AGG | 0.586380 | 5_2:-30939075 | None:intergenic |
| GACATGTCAGCATCTGGAGA+CGG | 0.587386 | 5_2:+30940994 | Msa0767520:CDS |
| TATGAATGTAGTTCAACTTG+GGG | 0.591302 | 5_2:+30938360 | Msa0767520:CDS |
| GTCAAACAATCTTCAGCACA+GGG | 0.597382 | 5_2:-30939378 | None:intergenic |
| GCAAGGGAAAGAGACGACAT+TGG | 0.597761 | 5_2:-30938021 | None:intergenic |
| AAGAACTAGAGTTCCTATGC+GGG | 0.599516 | 5_2:+30940764 | Msa0767520:CDS |
| CTTGATAGCTCGCAAAGTCG+TGG | 0.600293 | 5_2:-30940608 | None:intergenic |
| CCAAAGCAACAAACAAGAGG+AGG | 0.601556 | 5_2:-30939018 | None:intergenic |
| TCGAAAGCCGAGTCTCCAGA+AGG | 0.601773 | 5_2:+30938547 | Msa0767520:CDS |
| TGGATACTTGGTCGAGTACG+TGG | 0.602249 | 5_2:+30941627 | Msa0767520:CDS |
| ATCTAAACATAAGAAGGTGT+CGG | 0.603871 | 5_2:+30938504 | Msa0767520:CDS |
| GCTAGGAAGAAAGCTTCACT+AGG | 0.607054 | 5_2:+30938421 | Msa0767520:CDS |
| TGGTGCTGTTAGCGGGATGG+AGG | 0.607174 | 5_2:+30940945 | Msa0767520:CDS |
| TCCTCCATATCTTCCTGCGG+AGG | 0.613949 | 5_2:-30941654 | None:intergenic |
| TACAAAACTGATGTGTTACT+CGG | 0.614647 | 5_2:-30941766 | None:intergenic |
| TCTCATGTGACGATCAAGGA+GGG | 0.616712 | 5_2:-30940584 | None:intergenic |
| TGAACTCCACGAAAGCATGA+AGG | 0.616864 | 5_2:+30939098 | Msa0767520:CDS |
| ATTGCTCTTGCTAGTCTAGG+TGG | 0.617176 | 5_2:+30939183 | Msa0767520:CDS |
| GAGGACATAAGTGATACTTA+CGG | 0.618077 | 5_2:+30938991 | Msa0767520:CDS |
| AAGGCGAAGGAAACCTAAAG+AGG | 0.620452 | 5_2:+30938831 | Msa0767520:CDS |
| TAGTGAAAATGAACCTGTGG+TGG | 0.621542 | 5_2:+30938462 | Msa0767520:CDS |
| AAATTTCTCAGGGCTCCAGA+GGG | 0.621942 | 5_2:-30939124 | None:intergenic |
| CAAATTTCTCAGGGCTCCAG+AGG | 0.624526 | 5_2:-30939125 | None:intergenic |
| ACCTAGACTAGCAAGAGCAA+TGG | 0.625002 | 5_2:-30939181 | None:intergenic |
| CTATTGGCAGGCCTACCTGA+AGG | 0.625259 | 5_2:-30939063 | None:intergenic |
| AGACGTTCATTCAGCAAGTG+TGG | 0.625558 | 5_2:+30940710 | Msa0767520:CDS |
| GAGCCCTAACAAATTTCTCA+GGG | 0.627364 | 5_2:-30939134 | None:intergenic |
| GAAGTGGAAGAAAGTGAGCA+AGG | 0.632203 | 5_2:-30938038 | None:intergenic |
| CGAAAGCCGAGTCTCCAGAA+GGG | 0.633282 | 5_2:+30938548 | Msa0767520:CDS |
| GTAATGGACAAACTTTGACC+TGG | 0.633703 | 5_2:-30940824 | None:intergenic |
| GCTCCAAAGCAACAAACAAG+AGG | 0.633915 | 5_2:-30939021 | None:intergenic |
| AGTGCCATAGTGGCATAGGA+AGG | 0.633942 | 5_2:-30940672 | None:intergenic |
| TCACACTTAACATAGTAGCA+GGG | 0.639812 | 5_2:-30937953 | None:intergenic |
| TCCTCCGCAGGAAGATATGG+AGG | 0.644654 | 5_2:+30941653 | Msa0767520:CDS |
| ACGAGTGAAAGGGGTAATTG+GGG | 0.647030 | 5_2:-30940971 | None:intergenic |
| CGATTACAGAAACAGAGTAT+CGG | 0.647080 | 5_2:+30941706 | Msa0767520:CDS |
| ACATAAGTGATACTTACGGT+TGG | 0.647130 | 5_2:+30938995 | Msa0767520:CDS |
| TGACATGTCACGAGTGAAAG+GGG | 0.649548 | 5_2:-30940980 | None:intergenic |
| CACACTTAACATAGTAGCAG+GGG | 0.650602 | 5_2:-30937952 | None:intergenic |
| AAATTTGTTAGGGCTCCTGG+GGG | 0.655673 | 5_2:+30939141 | Msa0767520:CDS |
| AAATAATGTTCAAACCCGAT+CGG | 0.661932 | 5_2:+30939275 | Msa0767520:CDS |
| TACTACACCACAGAGCTCGA+TGG | 0.665232 | 5_2:+30940925 | Msa0767520:CDS |
| CAGATGGTGTTATCCCGCAT+AGG | 0.666123 | 5_2:-30940777 | None:intergenic |
| ATGAATGTAGTTCAACTTGG+GGG | 0.670230 | 5_2:+30938361 | Msa0767520:CDS |
| ACTTAACATAGTAGCAGGGG+CGG | 0.671249 | 5_2:-30937949 | None:intergenic |
| GCCTAGTGAAAATGAACCTG+TGG | 0.674022 | 5_2:+30938459 | Msa0767520:CDS |
| ATGTCCTCCATATCTTCCTG+CGG | 0.678164 | 5_2:-30941657 | None:intergenic |
| CAAGAACTAGAGTTCCTATG+CGG | 0.692513 | 5_2:+30940763 | Msa0767520:CDS |
| AACAGCACCATCGAGCTCTG+TGG | 0.705418 | 5_2:-30940932 | None:intergenic |
| ATCTCATGTGACGATCAAGG+AGG | 0.724742 | 5_2:-30940585 | None:intergenic |
| GTGGAGGATGAGACTGACGA+TGG | 0.806142 | 5_2:+30938943 | Msa0767520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATTAAAAATCAAAAT+TGG | - | chr5_2:30938124-30938143 | None:intergenic | 10.0% |
| !!! | AATTTTGATTTTTAATGAAA+TGG | + | chr5_2:30938123-30938142 | Msa0767520:intron | 10.0% |
| !!! | ATTTTGATTTTTAATGAAAT+GGG | + | chr5_2:30938124-30938143 | Msa0767520:intron | 10.0% |
| !! | AAATTAGTAGTATTATAATA+AGG | + | chr5_2:30939845-30939864 | Msa0767520:intron | 10.0% |
| !! | AATTAGTAGTATTATAATAA+GGG | + | chr5_2:30939846-30939865 | Msa0767520:intron | 10.0% |
| !!! | TTTTTAAGACTACATATAAA+GGG | - | chr5_2:30938071-30938090 | None:intergenic | 15.0% |
| !!! | TTTTTTAAGACTACATATAA+AGG | - | chr5_2:30938072-30938091 | None:intergenic | 15.0% |
| !! | TTAAAAATCAAAATTGGATA+AGG | - | chr5_2:30938118-30938137 | None:intergenic | 15.0% |
| !! | AAAATATAATTCTCCTATAA+AGG | + | chr5_2:30938176-30938195 | Msa0767520:intron | 15.0% |
| !! | ATTAAAAAAGTAACCTTTAT+AGG | - | chr5_2:30938192-30938211 | None:intergenic | 15.0% |
| !!! | AATATAATTTTAGAGGATAA+AGG | + | chr5_2:30938868-30938887 | Msa0767520:CDS | 15.0% |
| !! | CACTTATATATTAAAAAAAC+AGG | + | chr5_2:30939722-30939741 | Msa0767520:intron | 15.0% |
| !! | ATTAGTAGTATTATAATAAG+GGG | + | chr5_2:30939847-30939866 | Msa0767520:intron | 15.0% |
| !! | ATAGATTTCAAGAAAAAATA+GGG | - | chr5_2:30940223-30940242 | None:intergenic | 15.0% |
| !! | ATTTCTACATTATTTAACAA+GGG | - | chr5_2:30941095-30941114 | None:intergenic | 15.0% |
| !!! | ACATTTTAGAACGAAAAAAT+TGG | - | chr5_2:30939934-30939953 | None:intergenic | 20.0% |
| !!! | TCTAAAATGTGCTTATAATT+CGG | + | chr5_2:30939944-30939963 | Msa0767520:intron | 20.0% |
| !! | GATAGATTTCAAGAAAAAAT+AGG | - | chr5_2:30940224-30940243 | None:intergenic | 20.0% |
| !!! | TTTTTTGAAGAGAACATATA+AGG | + | chr5_2:30940398-30940417 | Msa0767520:intron | 20.0% |
| !!! | TTTATGTTTTTCAAATGGAT+TGG | - | chr5_2:30941067-30941086 | None:intergenic | 20.0% |
| !! | AATCCATTTGAAAAACATAA+AGG | + | chr5_2:30941066-30941085 | Msa0767520:intron | 20.0% |
| !! | ATCCATTTGAAAAACATAAA+GGG | + | chr5_2:30941067-30941086 | Msa0767520:intron | 20.0% |
| !! | GATTTCTACATTATTTAACA+AGG | - | chr5_2:30941096-30941115 | None:intergenic | 20.0% |
| !! | ATTATTCTTCCTATAATAGT+GGG | - | chr5_2:30941125-30941144 | None:intergenic | 20.0% |
| !! | AATTATTCTTCCTATAATAG+TGG | - | chr5_2:30941126-30941145 | None:intergenic | 20.0% |
| !! | AAGAATAATTTAACATGTGA+CGG | + | chr5_2:30941136-30941155 | Msa0767520:intron | 20.0% |
| !!! | ATTTTTGCTATCTTATTTTC+CGG | + | chr5_2:30941217-30941236 | Msa0767520:intron | 20.0% |
| !! | ATAAAATGCGTATAACAAAT+TGG | - | chr5_2:30941927-30941946 | None:intergenic | 20.0% |
| !! | AGAGGAGAATATAATTTTAG+AGG | + | chr5_2:30938861-30938880 | Msa0767520:CDS | 25.0% |
| !!! | ATAATTTTAGAGGATAAAGG+TGG | + | chr5_2:30938871-30938890 | Msa0767520:CDS | 25.0% |
| !!! | CATCAATTTCAAGTTCAATA+AGG | - | chr5_2:30939540-30939559 | None:intergenic | 25.0% |
| ! | TATAAGTGAAAATGACGAAA+GGG | - | chr5_2:30939710-30939729 | None:intergenic | 25.0% |
| ! | ATATAAGTGAAAATGACGAA+AGG | - | chr5_2:30939711-30939730 | None:intergenic | 25.0% |
| ! | GTAATAGTCATACACAAAAA+TGG | - | chr5_2:30939765-30939784 | None:intergenic | 25.0% |
| !! | GTATCTAGTAATTTGAAATG+CGG | + | chr5_2:30939894-30939913 | Msa0767520:intron | 25.0% |
| ! | CTAAAATGTGCTTATAATTC+GGG | + | chr5_2:30939945-30939964 | Msa0767520:intron | 25.0% |
| ! | TATGCATGTTTGAACTAATA+TGG | - | chr5_2:30940023-30940042 | None:intergenic | 25.0% |
| !! | AACATGAATGATTTTGTAGA+TGG | + | chr5_2:30940063-30940082 | Msa0767520:intron | 25.0% |
| !!! | TCACTAAATAGCTTAGTTTT+GGG | - | chr5_2:30940113-30940132 | None:intergenic | 25.0% |
| !! | TTCACTAAATAGCTTAGTTT+TGG | - | chr5_2:30940114-30940133 | None:intergenic | 25.0% |
| ! | CAAATGATTATTGTGTGAAA+GGG | - | chr5_2:30940163-30940182 | None:intergenic | 25.0% |
| ! | CTTTCACACAATAATCATTT+GGG | + | chr5_2:30940162-30940181 | Msa0767520:intron | 25.0% |
| !!! | CAACATTACTTTTTGGTTTA+TGG | - | chr5_2:30940320-30940339 | None:intergenic | 25.0% |
| ! | AAACCAAAAAGTAATGTTGT+TGG | + | chr5_2:30940321-30940340 | Msa0767520:intron | 25.0% |
| ! | TGCTTAACAGTTAACATATA+AGG | + | chr5_2:30940367-30940386 | Msa0767520:intron | 25.0% |
| !!! | TTCCCTTTATGTTTTTCAAA+TGG | - | chr5_2:30941072-30941091 | None:intergenic | 25.0% |
| !! | TTTCCTTTCATAGTGATTTT+AGG | + | chr5_2:30941309-30941328 | Msa0767520:intron | 25.0% |
| ! | ATCAATTATGCAATTGATTG+TGG | + | chr5_2:30941591-30941610 | Msa0767520:CDS | 25.0% |
| ! | TCAATTATGCAATTGATTGT+GGG | + | chr5_2:30941592-30941611 | Msa0767520:CDS | 25.0% |
| !! | TATGTGTTTTCAATTGATAG+AGG | + | chr5_2:30941848-30941867 | Msa0767520:three_prime_UTR | 25.0% |
| !! | AGGTTATTGTATCTAACTTT+TGG | + | chr5_2:30941896-30941915 | Msa0767520:three_prime_UTR | 25.0% |
| ! | TTCAATTTTGCAGTGTATGT+TGG | + | chr5_2:30938211-30938230 | Msa0767520:intron | 30.0% |
| ! | TCAATTTTGCAGTGTATGTT+GGG | + | chr5_2:30938212-30938231 | Msa0767520:intron | 30.0% |
| TCTATGAATGTAGTTCAACT+TGG | + | chr5_2:30938358-30938377 | Msa0767520:CDS | 30.0% | |
| CTATGAATGTAGTTCAACTT+GGG | + | chr5_2:30938359-30938378 | Msa0767520:CDS | 30.0% | |
| TATGAATGTAGTTCAACTTG+GGG | + | chr5_2:30938360-30938379 | Msa0767520:CDS | 30.0% | |
| TAAATCTAGTCATGTTGCAA+TGG | + | chr5_2:30938399-30938418 | Msa0767520:CDS | 30.0% | |
| ! | TAAGGCATCTAAACATAAGA+AGG | + | chr5_2:30938498-30938517 | Msa0767520:CDS | 30.0% |
| ! | ATCTAAACATAAGAAGGTGT+CGG | + | chr5_2:30938504-30938523 | Msa0767520:CDS | 30.0% |
| TTCTTAGAATCATCATCAGA+GGG | - | chr5_2:30938628-30938647 | None:intergenic | 30.0% | |
| GTGTTAGTTAAACGTTGATA+TGG | + | chr5_2:30938740-30938759 | Msa0767520:intron | 30.0% | |
| AGGAAGTGAAAAAAGTTACA+AGG | + | chr5_2:30938812-30938831 | Msa0767520:CDS | 30.0% | |
| GTCTTCCTTTATTGAAAATG+TGG | + | chr5_2:30938924-30938943 | Msa0767520:CDS | 30.0% | |
| TTCCTTTATTGAAAATGTGG+AGG | + | chr5_2:30938927-30938946 | Msa0767520:CDS | 30.0% | |
| ! | ATCCTCCACATTTTCAATAA+AGG | - | chr5_2:30938932-30938951 | None:intergenic | 30.0% |
| TTGGATCTGGAAAAATATGA+TGG | + | chr5_2:30938967-30938986 | Msa0767520:CDS | 30.0% | |
| TTCATGATCTATAAGCCTAT+TGG | - | chr5_2:30939082-30939101 | None:intergenic | 30.0% | |
| AAACTTGCAGATGATGAATA+TGG | + | chr5_2:30939225-30939244 | Msa0767520:CDS | 30.0% | |
| AAATAATGTTCAAACCCGAT+CGG | + | chr5_2:30939275-30939294 | Msa0767520:CDS | 30.0% | |
| AAATATTGACGTGTTGAAAG+AGG | + | chr5_2:30939413-30939432 | Msa0767520:CDS | 30.0% | |
| ! | TTGTTAGAATGATGACGAAA+GGG | - | chr5_2:30939623-30939642 | None:intergenic | 30.0% |
| ! | TTTGTTAGAATGATGACGAA+AGG | - | chr5_2:30939624-30939643 | None:intergenic | 30.0% |
| ATAAGTGAAAATGACGAAAG+GGG | - | chr5_2:30939709-30939728 | None:intergenic | 30.0% | |
| TCTTGAGAGATGAAAAATCA+GGG | - | chr5_2:30939820-30939839 | None:intergenic | 30.0% | |
| ATCTTGAGAGATGAAAAATC+AGG | - | chr5_2:30939821-30939840 | None:intergenic | 30.0% | |
| AACGATATTGTCTATTGCAA+TGG | + | chr5_2:30939983-30940002 | Msa0767520:intron | 30.0% | |
| CCAAATGATTATTGTGTGAA+AGG | - | chr5_2:30940164-30940183 | None:intergenic | 30.0% | |
| CCTTTCACACAATAATCATT+TGG | + | chr5_2:30940161-30940180 | Msa0767520:intron | 30.0% | |
| CTATCATTTGTTTAGAAACG+TGG | + | chr5_2:30940239-30940258 | Msa0767520:intron | 30.0% | |
| !! | CAACCAACAACATTACTTTT+TGG | - | chr5_2:30940327-30940346 | None:intergenic | 30.0% |
| TTGATTGTATGTCAGATTCT+CGG | + | chr5_2:30940430-30940449 | Msa0767520:intron | 30.0% | |
| !! | ATCAAGATTGCAAAGCATTT+TGG | + | chr5_2:30940625-30940644 | Msa0767520:CDS | 30.0% |
| !!! | AAGGTTTTGTTTGTGACTAA+TGG | + | chr5_2:30940886-30940905 | Msa0767520:CDS | 30.0% |
| TCTCCTAAAATCACTATGAA+AGG | - | chr5_2:30941315-30941334 | None:intergenic | 30.0% | |
| AGACAATATCACGATTGAAT+CGG | + | chr5_2:30941332-30941351 | Msa0767520:intron | 30.0% | |
| CCTTTATCAGTTATCAAATC+AGG | - | chr5_2:30941555-30941574 | None:intergenic | 30.0% | |
| ! | CCTGATTTGATAACTGATAA+AGG | + | chr5_2:30941552-30941571 | Msa0767520:CDS | 30.0% |
| CAATTATGCAATTGATTGTG+GGG | + | chr5_2:30941593-30941612 | Msa0767520:CDS | 30.0% | |
| GTAATAGATCAATGGATACT+TGG | + | chr5_2:30941615-30941634 | Msa0767520:CDS | 30.0% | |
| !! | GTAATCGATTTTATGCCATA+AGG | - | chr5_2:30941693-30941712 | None:intergenic | 30.0% |
| ! | TACAAAACTGATGTGTTACT+CGG | - | chr5_2:30941769-30941788 | None:intergenic | 30.0% |
| TAACCTAACAACTAAGTCTA+AGG | - | chr5_2:30941882-30941901 | None:intergenic | 30.0% | |
| TCACACTTAACATAGTAGCA+GGG | - | chr5_2:30937956-30937975 | None:intergenic | 35.0% | |
| ATCACACTTAACATAGTAGC+AGG | - | chr5_2:30937957-30937976 | None:intergenic | 35.0% | |
| AGAAGTTGAGTTACAAAGAG+AGG | - | chr5_2:30937998-30938017 | None:intergenic | 35.0% | |
| !! | ACTACATATAAAGGGTACCT+GGG | - | chr5_2:30938063-30938082 | None:intergenic | 35.0% |
| TCAGTGTATAATTCTTGTGC+TGG | + | chr5_2:30938261-30938280 | Msa0767520:intron | 35.0% | |
| ATGAATGTAGTTCAACTTGG+GGG | + | chr5_2:30938361-30938380 | Msa0767520:CDS | 35.0% | |
| GGTGGAAAAGAAAGTAACTA+AGG | + | chr5_2:30938480-30938499 | Msa0767520:CDS | 35.0% | |
| AACAAATCAATTGTCCCTTC+TGG | - | chr5_2:30938565-30938584 | None:intergenic | 35.0% | |
| !! | AGAAGGGACAATTGATTTGT+TGG | + | chr5_2:30938564-30938583 | Msa0767520:CDS | 35.0% |
| GATAGTGCTTCTATTGTAGA+AGG | + | chr5_2:30938595-30938614 | Msa0767520:CDS | 35.0% | |
| CTTCTTAGAATCATCATCAG+AGG | - | chr5_2:30938629-30938648 | None:intergenic | 35.0% | |
| AACACGAAAGACTCGAAAAA+AGG | + | chr5_2:30938651-30938670 | Msa0767520:CDS | 35.0% | |
| ACACGAAAGACTCGAAAAAA+GGG | + | chr5_2:30938652-30938671 | Msa0767520:CDS | 35.0% | |
| GGAAGAAGAGAAAGAAGTTA+AGG | + | chr5_2:30938792-30938811 | Msa0767520:CDS | 35.0% | |
| TGAAAAAAGTTACAAGGCGA+AGG | + | chr5_2:30938818-30938837 | Msa0767520:CDS | 35.0% | |
| ACCTAAAGAGGAGAATAAAG+AGG | + | chr5_2:30938843-30938862 | Msa0767520:CDS | 35.0% | |
| TCCTCTTTATTCTCCTCTTT+AGG | - | chr5_2:30938847-30938866 | None:intergenic | 35.0% | |
| !! | ATTTTAGAGGATAAAGGTGG+TGG | + | chr5_2:30938874-30938893 | Msa0767520:CDS | 35.0% |
| ! | TCTGGAAAAATATGATGGAG+AGG | + | chr5_2:30938972-30938991 | Msa0767520:CDS | 35.0% |
| GAGGACATAAGTGATACTTA+CGG | + | chr5_2:30938991-30939010 | Msa0767520:CDS | 35.0% | |
| ACATAAGTGATACTTACGGT+TGG | + | chr5_2:30938995-30939014 | Msa0767520:CDS | 35.0% | |
| !! | GGTCAGCATTGATAGTAAAA+GGG | + | chr5_2:30939296-30939315 | Msa0767520:CDS | 35.0% |
| ! | ATTGATAGTAAAAGGGCTAC+AGG | + | chr5_2:30939303-30939322 | Msa0767520:CDS | 35.0% |
| CACTGATGAAGATTGGTAAA+AGG | + | chr5_2:30939331-30939350 | Msa0767520:CDS | 35.0% | |
| ATATGTTCTAGCCTCATCAT+TGG | + | chr5_2:30939503-30939522 | Msa0767520:intron | 35.0% | |
| ! | TTTGAAATGCGGCTTATGTT+TGG | + | chr5_2:30939905-30939924 | Msa0767520:intron | 35.0% |
| !!! | TAGCTTAGTTTTGGGATAGT+TGG | - | chr5_2:30940105-30940124 | None:intergenic | 35.0% |
| TCTTTGTTCTGTCAATAGTC+AGG | - | chr5_2:30940188-30940207 | None:intergenic | 35.0% | |
| !!! | TCTGTTTTGTTTTAGCTGCT+TGG | + | chr5_2:30940478-30940497 | Msa0767520:intron | 35.0% |
| !!! | CTGTTTTGTTTTAGCTGCTT+GGG | + | chr5_2:30940479-30940498 | Msa0767520:intron | 35.0% |
| ATTAAGAACACATCTCATGC+AGG | + | chr5_2:30940534-30940553 | Msa0767520:intron | 35.0% | |
| !! | TTGGTGTCAAATTCTTCAGA+TGG | - | chr5_2:30940796-30940815 | None:intergenic | 35.0% |
| ! | TTAAGATTTTCGTGCCATAG+TGG | - | chr5_2:30940868-30940887 | None:intergenic | 35.0% |
| ACTATGGCACGAAAATCTTA+AGG | + | chr5_2:30940867-30940886 | Msa0767520:CDS | 35.0% | |
| TGTGGTGTAGTAATGTATCT+TGG | - | chr5_2:30940917-30940936 | None:intergenic | 35.0% | |
| ATCATGTCTCCCACTATTAT+AGG | + | chr5_2:30941113-30941132 | Msa0767520:intron | 35.0% | |
| CTTTGTTGCATTGCTTCAAA+AGG | - | chr5_2:30941169-30941188 | None:intergenic | 35.0% | |
| GCTTAATGAATGCCATATCA+AGG | + | chr5_2:30941354-30941373 | Msa0767520:intron | 35.0% | |
| !! | TGAAACATCTCTCTAAAGCT+AGG | + | chr5_2:30941470-30941489 | Msa0767520:intron | 35.0% |
| CATAATTGATGCTATGCTCT+AGG | - | chr5_2:30941581-30941600 | None:intergenic | 35.0% | |
| ATTGTGGGGTAATAGATCAA+TGG | + | chr5_2:30941607-30941626 | Msa0767520:CDS | 35.0% | |
| ! | GATTTTATGCCATAAGGATC+AGG | - | chr5_2:30941687-30941706 | None:intergenic | 35.0% |
| CGATTACAGAAACAGAGTAT+CGG | + | chr5_2:30941706-30941725 | Msa0767520:CDS | 35.0% | |
| TTGCCTTAGACTTAGTTGTT+AGG | + | chr5_2:30941876-30941895 | Msa0767520:three_prime_UTR | 35.0% | |
| CACACTTAACATAGTAGCAG+GGG | - | chr5_2:30937955-30937974 | None:intergenic | 40.0% | |
| GAGAGGTTAGTGTTCTGTTT+AGG | - | chr5_2:30937981-30938000 | None:intergenic | 40.0% | |
| AAGTGGAAGAAAGTGAGCAA+GGG | - | chr5_2:30938040-30938059 | None:intergenic | 40.0% | |
| !! | GACTACATATAAAGGGTACC+TGG | - | chr5_2:30938064-30938083 | None:intergenic | 40.0% |
| TAGTTCTTGTGCAATTGTGC+AGG | + | chr5_2:30938305-30938324 | Msa0767520:intron | 40.0% | |
| ! | ACCACAGGTTCATTTTCACT+AGG | - | chr5_2:30938463-30938482 | None:intergenic | 40.0% |
| TAGTGAAAATGAACCTGTGG+TGG | + | chr5_2:30938462-30938481 | Msa0767520:CDS | 40.0% | |
| !! | GTTACTTTCTTTTCCACCAC+AGG | - | chr5_2:30938478-30938497 | None:intergenic | 40.0% |
| AATCATCATCAGAGGGAGAT+GGG | - | chr5_2:30938621-30938640 | None:intergenic | 40.0% | |
| !! | CTCATCTATGTCACCGATTT+CGG | - | chr5_2:30938905-30938924 | None:intergenic | 40.0% |
| TGATCTATAAGCCTATTGGC+AGG | - | chr5_2:30939078-30939097 | None:intergenic | 40.0% | |
| !! | GAGCCCTGAGAAATTTGTTA+GGG | + | chr5_2:30939131-30939150 | Msa0767520:CDS | 40.0% |
| GAGCCCTAACAAATTTCTCA+GGG | - | chr5_2:30939137-30939156 | None:intergenic | 40.0% | |
| !! | AGAAATTTGTTAGGGCTCCT+GGG | + | chr5_2:30939139-30939158 | Msa0767520:CDS | 40.0% |
| TACTATCAATGCTGACCGAT+CGG | - | chr5_2:30939293-30939312 | None:intergenic | 40.0% | |
| !! | CGGTCAGCATTGATAGTAAA+AGG | + | chr5_2:30939295-30939314 | Msa0767520:CDS | 40.0% |
| GTCAAACAATCTTCAGCACA+GGG | - | chr5_2:30939381-30939400 | None:intergenic | 40.0% | |
| TGTCAAACAATCTTCAGCAC+AGG | - | chr5_2:30939382-30939401 | None:intergenic | 40.0% | |
| TTGACGTGTTGAAAGAGGTA+CGG | + | chr5_2:30939418-30939437 | Msa0767520:intron | 40.0% | |
| CTGCTATATCACCAATGATG+AGG | - | chr5_2:30939517-30939536 | None:intergenic | 40.0% | |
| TTAGAAACGTGGCGACAATA+AGG | + | chr5_2:30940250-30940269 | Msa0767520:intron | 40.0% | |
| GACAATAAGGATTGAACCCT+AGG | + | chr5_2:30940263-30940282 | Msa0767520:intron | 40.0% | |
| TCTATGTCCAAGTTGTCCTA+GGG | - | chr5_2:30940282-30940301 | None:intergenic | 40.0% | |
| TTCTATGTCCAAGTTGTCCT+AGG | - | chr5_2:30940283-30940302 | None:intergenic | 40.0% | |
| CAACTTGGACATAGAAGCTT+TGG | + | chr5_2:30940287-30940306 | Msa0767520:intron | 40.0% | |
| !! | GATTGCAAAGCATTTTGGAG+CGG | + | chr5_2:30940630-30940649 | Msa0767520:CDS | 40.0% |
| TAAACCTTCCTATGCCACTA+TGG | + | chr5_2:30940668-30940687 | Msa0767520:CDS | 40.0% | |
| CAAGAACTAGAGTTCCTATG+CGG | + | chr5_2:30940763-30940782 | Msa0767520:CDS | 40.0% | |
| AAGAACTAGAGTTCCTATGC+GGG | + | chr5_2:30940764-30940783 | Msa0767520:CDS | 40.0% | |
| TTGACACCAAAAACAATGCC+AGG | + | chr5_2:30940806-30940825 | Msa0767520:CDS | 40.0% | |
| ! | CTTTGACCTGGCATTGTTTT+TGG | - | chr5_2:30940815-30940834 | None:intergenic | 40.0% |
| !! | GTAATGGACAAACTTTGACC+TGG | - | chr5_2:30940827-30940846 | None:intergenic | 40.0% |
| CAACTACTTCACGTTCGTAA+TGG | - | chr5_2:30940843-30940862 | None:intergenic | 40.0% | |
| ! | TTTTCCGGAAAATCAGCGAT+TGG | + | chr5_2:30941232-30941251 | Msa0767520:intron | 40.0% |
| !!! | AAGTCCAATCGCTGATTTTC+CGG | - | chr5_2:30941239-30941258 | None:intergenic | 40.0% |
| AATCAGCGATTGGACTTTGT+TGG | + | chr5_2:30941242-30941261 | Msa0767520:intron | 40.0% | |
| AGCTATCATGCGAATGTTGA+CGG | + | chr5_2:30941524-30941543 | Msa0767520:intron | 40.0% | |
| GACATTACTCCTGATCCTTA+TGG | + | chr5_2:30941675-30941694 | Msa0767520:CDS | 40.0% | |
| TATCACCTGGTTCAACTAAC+TGG | - | chr5_2:30941744-30941763 | None:intergenic | 40.0% | |
| ACTTAACATAGTAGCAGGGG+CGG | - | chr5_2:30937952-30937971 | None:intergenic | 45.0% | |
| GAAGTGGAAGAAAGTGAGCA+AGG | - | chr5_2:30938041-30938060 | None:intergenic | 45.0% | |
| !! | TATAAAGGGTACCTGGGAAG+TGG | - | chr5_2:30938057-30938076 | None:intergenic | 45.0% |
| TGTGCAGGTGTAACTTGACT+TGG | + | chr5_2:30938320-30938339 | Msa0767520:intron | 45.0% | |
| CTAGTCATGTTGCAATGGCT+AGG | + | chr5_2:30938404-30938423 | Msa0767520:CDS | 45.0% | |
| GCTAGGAAGAAAGCTTCACT+AGG | + | chr5_2:30938421-30938440 | Msa0767520:CDS | 45.0% | |
| GCCTAGTGAAAATGAACCTG+TGG | + | chr5_2:30938459-30938478 | Msa0767520:CDS | 45.0% | |
| ! | AATTGTCCCTTCTGGAGACT+CGG | - | chr5_2:30938557-30938576 | None:intergenic | 45.0% |
| GAATCATCATCAGAGGGAGA+TGG | - | chr5_2:30938622-30938641 | None:intergenic | 45.0% | |
| !! | TGCATCTAGTTCTGCTGCTT+TGG | + | chr5_2:30938771-30938790 | Msa0767520:CDS | 45.0% |
| AAGGCGAAGGAAACCTAAAG+AGG | + | chr5_2:30938831-30938850 | Msa0767520:CDS | 45.0% | |
| CCAAAGCAACAAACAAGAGG+AGG | - | chr5_2:30939021-30939040 | None:intergenic | 45.0% | |
| ! | CCTCCTCTTGTTTGTTGCTT+TGG | + | chr5_2:30939018-30939037 | Msa0767520:CDS | 45.0% |
| GCTCCAAAGCAACAAACAAG+AGG | - | chr5_2:30939024-30939043 | None:intergenic | 45.0% | |
| ! | CAACATGCTTTTGTGCCTTC+AGG | + | chr5_2:30939048-30939067 | Msa0767520:CDS | 45.0% |
| ! | ATGCTTTTGTGCCTTCAGGT+AGG | + | chr5_2:30939052-30939071 | Msa0767520:CDS | 45.0% |
| ! | TGAACTCCACGAAAGCATGA+AGG | + | chr5_2:30939098-30939117 | Msa0767520:CDS | 45.0% |
| AAATTTCTCAGGGCTCCAGA+GGG | - | chr5_2:30939127-30939146 | None:intergenic | 45.0% | |
| ! | GGAGCCCTGAGAAATTTGTT+AGG | + | chr5_2:30939130-30939149 | Msa0767520:CDS | 45.0% |
| GGAGCCCTAACAAATTTCTC+AGG | - | chr5_2:30939138-30939157 | None:intergenic | 45.0% | |
| !! | GAGAAATTTGTTAGGGCTCC+TGG | + | chr5_2:30939138-30939157 | Msa0767520:CDS | 45.0% |
| !! | GAAATTTGTTAGGGCTCCTG+GGG | + | chr5_2:30939140-30939159 | Msa0767520:CDS | 45.0% |
| !! | AAATTTGTTAGGGCTCCTGG+GGG | + | chr5_2:30939141-30939160 | Msa0767520:CDS | 45.0% |
| AAGAGCAATGGCAACACTAC+CGG | - | chr5_2:30939172-30939191 | None:intergenic | 45.0% | |
| ACCTAGACTAGCAAGAGCAA+TGG | - | chr5_2:30939184-30939203 | None:intergenic | 45.0% | |
| ! | ATTGCTCTTGCTAGTCTAGG+TGG | + | chr5_2:30939183-30939202 | Msa0767520:CDS | 45.0% |
| !!! | AGGTGGCAAGGTTGCTTTTA+TGG | + | chr5_2:30939200-30939219 | Msa0767520:CDS | 45.0% |
| !!! | GGTGGCAAGGTTGCTTTTAT+GGG | + | chr5_2:30939201-30939220 | Msa0767520:CDS | 45.0% |
| ACTATCAATGCTGACCGATC+GGG | - | chr5_2:30939292-30939311 | None:intergenic | 45.0% | |
| GGTGTCTCACTGATGAAGAT+TGG | + | chr5_2:30939324-30939343 | Msa0767520:CDS | 45.0% | |
| CGAAAGGGCTTACAAATACG+AGG | - | chr5_2:30939608-30939627 | None:intergenic | 45.0% | |
| GGGCTTATGAATAGAGACAG+AGG | - | chr5_2:30939689-30939708 | None:intergenic | 45.0% | |
| GATTGAACCCTAGGACAACT+TGG | + | chr5_2:30940272-30940291 | Msa0767520:intron | 45.0% | |
| GTTGGTTGAAAGCTCATGAG+TGG | + | chr5_2:30940339-30940358 | Msa0767520:intron | 45.0% | |
| TCTCATGTGACGATCAAGGA+GGG | - | chr5_2:30940587-30940606 | None:intergenic | 45.0% | |
| ATCTCATGTGACGATCAAGG+AGG | - | chr5_2:30940588-30940607 | None:intergenic | 45.0% | |
| TGGATCTCATGTGACGATCA+AGG | - | chr5_2:30940591-30940610 | None:intergenic | 45.0% | |
| AGACGTTCATTCAGCAAGTG+TGG | + | chr5_2:30940710-30940729 | Msa0767520:CDS | 45.0% | |
| GTGAAGTAGTTGCACCACTA+TGG | + | chr5_2:30940851-30940870 | Msa0767520:CDS | 45.0% | |
| ACGAGTGAAAGGGGTAATTG+GGG | - | chr5_2:30940974-30940993 | None:intergenic | 45.0% | |
| CACGAGTGAAAGGGGTAATT+GGG | - | chr5_2:30940975-30940994 | None:intergenic | 45.0% | |
| TCACGAGTGAAAGGGGTAAT+TGG | - | chr5_2:30940976-30940995 | None:intergenic | 45.0% | |
| TGACATGTCACGAGTGAAAG+GGG | - | chr5_2:30940983-30941002 | None:intergenic | 45.0% | |
| CTGACATGTCACGAGTGAAA+GGG | - | chr5_2:30940984-30941003 | None:intergenic | 45.0% | |
| CATATCAAGGAGCCAACACT+CGG | + | chr5_2:30941367-30941386 | Msa0767520:intron | 45.0% | |
| ATATCAAGGAGCCAACACTC+GGG | + | chr5_2:30941368-30941387 | Msa0767520:intron | 45.0% | |
| ATGTCCTCCATATCTTCCTG+CGG | - | chr5_2:30941660-30941679 | None:intergenic | 45.0% | |
| TAGAGCCAGTTAGTTGAACC+AGG | + | chr5_2:30941736-30941755 | Msa0767520:exon | 45.0% | |
| GCAAGGGAAAGAGACGACAT+TGG | - | chr5_2:30938024-30938043 | None:intergenic | 50.0% | |
| CTCACTTTCTTCCACTTCCC+AGG | + | chr5_2:30938043-30938062 | Msa0767520:CDS | 50.0% | |
| GGATGAGACTGACGATGGTT+TGG | + | chr5_2:30938948-30938967 | Msa0767520:CDS | 50.0% | |
| ! | GACTGACGATGGTTTGGATC+TGG | + | chr5_2:30938954-30938973 | Msa0767520:CDS | 50.0% |
| AAAGCATGAAGGATGCCCTC+TGG | + | chr5_2:30939109-30939128 | Msa0767520:CDS | 50.0% | |
| CAAATTTCTCAGGGCTCCAG+AGG | - | chr5_2:30939128-30939147 | None:intergenic | 50.0% | |
| ! | GCCATTGCTCTTGCTAGTCT+AGG | + | chr5_2:30939180-30939199 | Msa0767520:CDS | 50.0% |
| ! | TCTTGCTAGTCTAGGTGGCA+AGG | + | chr5_2:30939188-30939207 | Msa0767520:CDS | 50.0% |
| ! | CTTGATAGCTCGCAAAGTCG+TGG | - | chr5_2:30940611-30940630 | None:intergenic | 50.0% |
| AGTGCCATAGTGGCATAGGA+AGG | - | chr5_2:30940675-30940694 | None:intergenic | 50.0% | |
| !! | TGAGAGTGCCATAGTGGCAT+AGG | - | chr5_2:30940679-30940698 | None:intergenic | 50.0% |
| TATGCCACTATGGCACTCTC+AGG | + | chr5_2:30940678-30940697 | Msa0767520:CDS | 50.0% | |
| !! | TCTTCCTGAGAGTGCCATAG+TGG | - | chr5_2:30940685-30940704 | None:intergenic | 50.0% |
| !! | CAGATGGTGTTATCCCGCAT+AGG | - | chr5_2:30940780-30940799 | None:intergenic | 50.0% |
| TACTACACCACAGAGCTCGA+TGG | + | chr5_2:30940925-30940944 | Msa0767520:CDS | 50.0% | |
| GCTGACATGTCACGAGTGAA+AGG | - | chr5_2:30940985-30941004 | None:intergenic | 50.0% | |
| ACTCGTGACATGTCAGCATC+TGG | + | chr5_2:30940988-30941007 | Msa0767520:CDS | 50.0% | |
| GACATGTCAGCATCTGGAGA+CGG | + | chr5_2:30940994-30941013 | Msa0767520:CDS | 50.0% | |
| GCGATTGGACTTTGTTGGCA+AGG | + | chr5_2:30941247-30941266 | Msa0767520:intron | 50.0% | |
| !! | CGAGTGTTGGCTCCTTGATA+TGG | - | chr5_2:30941369-30941388 | None:intergenic | 50.0% |
| TATCAAGGAGCCAACACTCG+GGG | + | chr5_2:30941369-30941388 | Msa0767520:intron | 50.0% | |
| CAAGTATATGCCCCGAGTGT+TGG | - | chr5_2:30941382-30941401 | None:intergenic | 50.0% | |
| TGGATACTTGGTCGAGTACG+TGG | + | chr5_2:30941627-30941646 | Msa0767520:CDS | 50.0% | |
| CTTTCCTCCGCAGGAAGATA+TGG | + | chr5_2:30941650-30941669 | Msa0767520:CDS | 50.0% | |
| !! | GTGTTACTCGGTGTATCACC+TGG | - | chr5_2:30941757-30941776 | None:intergenic | 50.0% |
| TCGAAAGCCGAGTCTCCAGA+AGG | + | chr5_2:30938547-30938566 | Msa0767520:CDS | 55.0% | |
| CGAAAGCCGAGTCTCCAGAA+GGG | + | chr5_2:30938548-30938567 | Msa0767520:CDS | 55.0% | |
| ! | GGTGGTGGTGAAGCCGAAAT+CGG | + | chr5_2:30938889-30938908 | Msa0767520:CDS | 55.0% |
| GTGGAGGATGAGACTGACGA+TGG | + | chr5_2:30938943-30938962 | Msa0767520:CDS | 55.0% | |
| CTATTGGCAGGCCTACCTGA+AGG | - | chr5_2:30939066-30939085 | None:intergenic | 55.0% | |
| CTTCAGGTAGGCCTGCCAAT+AGG | + | chr5_2:30939064-30939083 | Msa0767520:CDS | 55.0% | |
| GGGCATCCTTCATGCTTTCG+TGG | - | chr5_2:30939107-30939126 | None:intergenic | 55.0% | |
| AACAGCACCATCGAGCTCTG+TGG | - | chr5_2:30940935-30940954 | None:intergenic | 55.0% | |
| !! | GAGCTCGATGGTGCTGTTAG+CGG | + | chr5_2:30940937-30940956 | Msa0767520:CDS | 55.0% |
| !! | AGCTCGATGGTGCTGTTAGC+GGG | + | chr5_2:30940938-30940957 | Msa0767520:CDS | 55.0% |
| TCTGGAGACGGCATTGTTGC+AGG | + | chr5_2:30941006-30941025 | Msa0767520:CDS | 55.0% | |
| TCCTCCGCAGGAAGATATGG+AGG | + | chr5_2:30941653-30941672 | Msa0767520:CDS | 55.0% | |
| TCCTCCATATCTTCCTGCGG+AGG | - | chr5_2:30941657-30941676 | None:intergenic | 55.0% | |
| !! | CGATGGTGCTGTTAGCGGGA+TGG | + | chr5_2:30940942-30940961 | Msa0767520:CDS | 60.0% |
| !! | TGGTGCTGTTAGCGGGATGG+AGG | + | chr5_2:30940945-30940964 | Msa0767520:CDS | 60.0% |
| AGTACGTGGCTTTCCTCCGC+AGG | + | chr5_2:30941641-30941660 | Msa0767520:CDS | 60.0% | |
| ACACTACCGGCACAACCCCC+AGG | - | chr5_2:30939159-30939178 | None:intergenic | 65.0% | |
| AGGGCTCCTGGGGGTTGTGC+CGG | + | chr5_2:30939150-30939169 | Msa0767520:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 30937946 | 30941967 | 30937946 | ID=Msa0767520;Name=Msa0767520 |
| chr5_2 | mRNA | 30937946 | 30941967 | 30937946 | ID=Msa0767520-mRNA-1;Parent=Msa0767520;Name=Msa0767520-mRNA-1;_AED=0.06;_eAED=0.06;_QI=78|1|1|1|1|1|5|215|583 |
| chr5_2 | exon | 30937946 | 30938064 | 30937946 | ID=Msa0767520-mRNA-1:exon:11533;Parent=Msa0767520-mRNA-1 |
| chr5_2 | exon | 30938327 | 30938673 | 30938327 | ID=Msa0767520-mRNA-1:exon:11534;Parent=Msa0767520-mRNA-1 |
| chr5_2 | exon | 30938770 | 30939434 | 30938770 | ID=Msa0767520-mRNA-1:exon:11535;Parent=Msa0767520-mRNA-1 |
| chr5_2 | exon | 30940556 | 30941027 | 30940556 | ID=Msa0767520-mRNA-1:exon:11536;Parent=Msa0767520-mRNA-1 |
| chr5_2 | exon | 30941526 | 30941967 | 30941526 | ID=Msa0767520-mRNA-1:exon:11537;Parent=Msa0767520-mRNA-1 |
| chr5_2 | five_prime_UTR | 30937946 | 30938023 | 30937946 | ID=Msa0767520-mRNA-1:five_prime_utr;Parent=Msa0767520-mRNA-1 |
| chr5_2 | CDS | 30938024 | 30938064 | 30938024 | ID=Msa0767520-mRNA-1:cds;Parent=Msa0767520-mRNA-1 |
| chr5_2 | CDS | 30938327 | 30938673 | 30938327 | ID=Msa0767520-mRNA-1:cds;Parent=Msa0767520-mRNA-1 |
| chr5_2 | CDS | 30938770 | 30939434 | 30938770 | ID=Msa0767520-mRNA-1:cds;Parent=Msa0767520-mRNA-1 |
| chr5_2 | CDS | 30940556 | 30941027 | 30940556 | ID=Msa0767520-mRNA-1:cds;Parent=Msa0767520-mRNA-1 |
| chr5_2 | CDS | 30941526 | 30941752 | 30941526 | ID=Msa0767520-mRNA-1:cds;Parent=Msa0767520-mRNA-1 |
| chr5_2 | three_prime_UTR | 30941753 | 30941967 | 30941753 | ID=Msa0767520-mRNA-1:three_prime_utr;Parent=Msa0767520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
