Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847100 | XP_003614114.1 | 95.883 | 583 | 19 | 2 | 1 | 583 | 1 | 578 | 0.0 | 1152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847100 | sp|F4I0K2|SCKL2_ARATH | 58.151 | 595 | 214 | 9 | 1 | 577 | 1 | 578 | 0.0 | 658 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847100 | G7JY18 | 95.883 | 583 | 19 | 2 | 1 | 583 | 1 | 578 | 0.0 | 1152 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0056520 | Msa0847100 | 0.846198 | 2.525149e-59 | -8.615850e-47 |
| Msa0056690 | Msa0847100 | 0.851506 | 8.490909e-61 | -8.615850e-47 |
| Msa0639370 | Msa0847100 | 0.810357 | 1.199846e-50 | -8.615850e-47 |
| Msa0661240 | Msa0847100 | 0.825799 | 3.849239e-54 | -8.615850e-47 |
| Msa0727170 | Msa0847100 | 0.842236 | 2.924182e-58 | -8.615850e-47 |
| Msa0767520 | Msa0847100 | 0.880418 | 5.581425e-70 | -8.615850e-47 |
| Msa0384430 | Msa0847100 | 0.848321 | 6.604804e-60 | -8.615850e-47 |
| Msa0390060 | Msa0847100 | 0.840582 | 7.970307e-58 | -8.615850e-47 |
| Msa0522660 | Msa0847100 | 0.846599 | 1.962954e-59 | -8.615850e-47 |
| Msa0847100 | Msa1272210 | 0.812733 | 3.653902e-51 | -8.615850e-47 |
| Msa0847100 | Msa1309960 | 0.800127 | 1.667499e-48 | -8.615850e-47 |
| Msa0847100 | Msa1317030 | 0.806704 | 7.230090e-50 | -8.615850e-47 |
| Msa0847100 | Msa1447300 | 0.845920 | 3.005036e-59 | -8.615850e-47 |
| Msa0847100 | Msa1460440 | 0.847255 | 1.298085e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847100 | MtrunA17_Chr5g0419371 | 95.883 | 583 | 19 | 2 | 1 | 583 | 1 | 578 | 0.0 | 1152 |
| Msa0847100 | MtrunA17_Chr4g0008441 | 43.333 | 390 | 191 | 5 | 193 | 565 | 81 | 457 | 1.44e-109 | 336 |
| Msa0847100 | MtrunA17_Chr1g0188291 | 31.034 | 348 | 201 | 5 | 214 | 558 | 7 | 318 | 1.40e-49 | 174 |
| Msa0847100 | MtrunA17_Chr2g0329451 | 32.686 | 309 | 183 | 5 | 255 | 560 | 40 | 326 | 4.97e-49 | 173 |
| Msa0847100 | MtrunA17_Chr4g0033631 | 31.214 | 346 | 199 | 6 | 215 | 557 | 15 | 324 | 7.27e-49 | 172 |
| Msa0847100 | MtrunA17_Chr1g0204101 | 29.942 | 344 | 204 | 5 | 215 | 555 | 23 | 332 | 3.04e-47 | 168 |
| Msa0847100 | MtrunA17_Chr6g0474331 | 29.859 | 355 | 212 | 6 | 204 | 555 | 17 | 337 | 3.12e-47 | 169 |
| Msa0847100 | MtrunA17_Chr5g0434971 | 30.725 | 345 | 201 | 7 | 214 | 555 | 66 | 375 | 7.47e-43 | 158 |
| Msa0847100 | MtrunA17_Chr1g0171921 | 27.036 | 307 | 199 | 3 | 257 | 557 | 206 | 493 | 3.53e-34 | 136 |
| Msa0847100 | MtrunA17_Chr1g0177771 | 28.289 | 304 | 186 | 6 | 257 | 557 | 276 | 550 | 7.36e-32 | 129 |
| Msa0847100 | MtrunA17_Chr1g0177321 | 28.618 | 304 | 176 | 6 | 257 | 557 | 202 | 467 | 3.65e-30 | 124 |
| Msa0847100 | MtrunA17_Chr1g0183661 | 26.897 | 290 | 175 | 8 | 255 | 540 | 14 | 270 | 3.25e-28 | 114 |
| Msa0847100 | MtrunA17_Chr1g0183241 | 27.018 | 285 | 186 | 6 | 273 | 555 | 134 | 398 | 4.06e-28 | 117 |
| Msa0847100 | MtrunA17_Chr7g0246421 | 30.851 | 188 | 111 | 3 | 351 | 538 | 2 | 170 | 7.05e-23 | 96.7 |
| Msa0847100 | MtrunA17_Chr4g0020911 | 26.816 | 179 | 111 | 3 | 338 | 516 | 44 | 202 | 2.02e-15 | 75.5 |
| Msa0847100 | MtrunA17_Chr1g0176221 | 34.091 | 88 | 58 | 0 | 339 | 426 | 35 | 122 | 5.43e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0847100 | AT1G69200.1 | 58.151 | 595 | 214 | 9 | 1 | 577 | 1 | 578 | 0.0 | 658 |
| Msa0847100 | AT3G54090.1 | 42.965 | 398 | 211 | 5 | 183 | 565 | 70 | 466 | 5.35e-107 | 330 |
| Msa0847100 | AT5G51830.2 | 30.899 | 356 | 209 | 5 | 208 | 560 | 16 | 337 | 1.09e-50 | 178 |
| Msa0847100 | AT5G51830.1 | 30.899 | 356 | 209 | 5 | 208 | 560 | 16 | 337 | 1.09e-50 | 178 |
| Msa0847100 | AT2G31390.1 | 34.219 | 301 | 173 | 5 | 255 | 552 | 35 | 313 | 1.56e-49 | 174 |
| Msa0847100 | AT3G59480.1 | 32.039 | 309 | 185 | 5 | 255 | 560 | 36 | 322 | 1.67e-48 | 172 |
| Msa0847100 | AT4G10260.1 | 31.143 | 350 | 202 | 6 | 214 | 560 | 5 | 318 | 2.04e-47 | 169 |
| Msa0847100 | AT1G06030.1 | 30.205 | 341 | 199 | 5 | 215 | 552 | 11 | 315 | 6.92e-47 | 167 |
| Msa0847100 | AT1G06020.1 | 31.894 | 301 | 180 | 5 | 255 | 552 | 36 | 314 | 1.83e-46 | 167 |
| Msa0847100 | AT1G66430.1 | 30.145 | 345 | 203 | 6 | 214 | 555 | 64 | 373 | 1.19e-45 | 166 |
Find 148 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGATTGCAAAGCATTT+TGG | 0.178739 | 5_4:+28491051 | Msa0847100:CDS |
| CGGTCAGCATTGATAGTAAA+AGG | 0.213176 | 5_4:+28489746 | Msa0847100:CDS |
| CCTCCTCTTGTTTGTTGCTT+TGG | 0.218528 | 5_4:+28489469 | Msa0847100:CDS |
| CTCATCTATGTCACCGATTT+CGG | 0.228080 | 5_4:-28489353 | None:intergenic |
| TCACGAGTGAAAGGGGTAAT+TGG | 0.237851 | 5_4:-28491399 | None:intergenic |
| TGCCATTGCTCTTGCTAGTT+TGG | 0.263077 | 5_4:+28489630 | Msa0847100:CDS |
| TCCTCTTTATTCTCCTCTTT+AGG | 0.276483 | 5_4:-28489295 | None:intergenic |
| TTGCCTTAGACTTAGTTCTT+AGG | 0.278602 | 5_4:+28492309 | Msa0847100:three_prime_UTR |
| GCCATTGCTCTTGCTAGTTT+GGG | 0.285472 | 5_4:+28489631 | Msa0847100:CDS |
| GTCTTTGCCGACGCCTTCTT+AGG | 0.292489 | 5_4:-28488963 | None:intergenic |
| TGCATCTAGTTCTGCTGCTT+TGG | 0.313717 | 5_4:+28489222 | Msa0847100:CDS |
| GGAAGAAGAGAAAGAAGTTA+AGG | 0.324640 | 5_4:+28489243 | Msa0847100:CDS |
| AGCTATCATGCGAATGTTGA+TGG | 0.326960 | 5_4:+28491959 | Msa0847100:intron |
| CTCAAAATTCAGTGTAAATC+TGG | 0.327725 | 5_4:+28488837 | Msa0847100:CDS |
| CCTTTATCAGTTATCAAATC+AGG | 0.336586 | 5_4:-28491987 | None:intergenic |
| CCTGATTTGATAACTGATAA+AGG | 0.337736 | 5_4:+28491987 | Msa0847100:CDS |
| GACAAGTTTGTGTTCTGTTT+AGG | 0.348533 | 5_4:-28488417 | None:intergenic |
| ATAAAATGTGTATAACAAAT+TGG | 0.356508 | 5_4:-28492357 | None:intergenic |
| CACGAGTGAAAGGGGTAATT+GGG | 0.359391 | 5_4:-28491398 | None:intergenic |
| GACATTACTCCTGACCCTTA+TGG | 0.367773 | 5_4:+28492110 | Msa0847100:CDS |
| AAACTTGCAGATGATGAATA+TGG | 0.370202 | 5_4:+28489676 | Msa0847100:CDS |
| TATCACCTGGTTCAACTAAC+TGG | 0.371257 | 5_4:-28492176 | None:intergenic |
| CACTGATGAAGATTGGTAAA+AGG | 0.375060 | 5_4:+28489782 | Msa0847100:CDS |
| GGAGCCCTGAGAAATTTGTT+AGG | 0.379308 | 5_4:+28489581 | Msa0847100:CDS |
| AAACCTAAGAACTAAGTCTA+AGG | 0.387067 | 5_4:-28492312 | None:intergenic |
| TCTGGAGACGGCATTGTTGC+AGG | 0.393744 | 5_4:+28491432 | Msa0847100:CDS |
| AACAAATCAATTGTCCCTTC+TGG | 0.394435 | 5_4:-28489014 | None:intergenic |
| AGAAGGGACAATTGATTTGT+TGG | 0.395531 | 5_4:+28489016 | Msa0847100:CDS |
| TAAACCTTCCTATGCCACTA+TGG | 0.397175 | 5_4:+28491094 | Msa0847100:CDS |
| AACACTACCGGCACAACCCC+CGG | 0.397402 | 5_4:-28489608 | None:intergenic |
| CATAGTGGTGCAACTACTTC+GGG | 0.403717 | 5_4:-28491276 | None:intergenic |
| CTCACTTTCTTCCACTTCCC+AGG | 0.409532 | 5_4:+28488482 | Msa0847100:CDS |
| GGAGCCCTAACAAATTTCTC+AGG | 0.410686 | 5_4:-28489586 | None:intergenic |
| CCGAAGTAGTTGCACCACTA+TGG | 0.416670 | 5_4:+28491277 | Msa0847100:CDS |
| TCATAACAATTGAAATTTCA+AGG | 0.418797 | 5_4:-28492381 | None:intergenic |
| TTTGCTTTAGAGAGAGAAAG+AGG | 0.422008 | 5_4:-28488354 | None:intergenic |
| GAGAAATTTGTTAGGGCTCC+CGG | 0.430196 | 5_4:+28489589 | Msa0847100:CDS |
| TCTATGAACGTAGTTCAACT+TGG | 0.431744 | 5_4:+28488810 | Msa0847100:CDS |
| GATAGTGCTTCTATTGTAGA+AGG | 0.432468 | 5_4:+28489047 | Msa0847100:CDS |
| GGATGAGACTGACGATGGTT+TGG | 0.435291 | 5_4:+28489399 | Msa0847100:CDS |
| ACTCGTGACATGTCAGCATC+TGG | 0.448444 | 5_4:+28491414 | Msa0847100:CDS |
| CCATAGTGGTGCAACTACTT+CGG | 0.449011 | 5_4:-28491277 | None:intergenic |
| CTTCAGGTAGGCCTGCTAAT+AGG | 0.450481 | 5_4:+28489515 | Msa0847100:CDS |
| AGAAATTTGTTAGGGCTCCC+GGG | 0.456873 | 5_4:+28489590 | Msa0847100:CDS |
| AGCTCGATGGTGCTGTTAGC+GGG | 0.465873 | 5_4:+28491364 | Msa0847100:CDS |
| ACTATCAATGCTGACCGATC+GGG | 0.466215 | 5_4:-28489740 | None:intergenic |
| TACTATCAATGCTGACCGAT+CGG | 0.468391 | 5_4:-28489741 | None:intergenic |
| GACTGACGATGGTTTGGATC+TGG | 0.473146 | 5_4:+28489405 | Msa0847100:CDS |
| TGTGGTGTAGTAATGTATCT+TGG | 0.479747 | 5_4:-28491340 | None:intergenic |
| TCTTGCTAGTTTGGGTGGCA+AGG | 0.482908 | 5_4:+28489639 | Msa0847100:CDS |
| TTGGTGTCAAATTCTTCAGA+TGG | 0.483845 | 5_4:-28491219 | None:intergenic |
| TAGAGAGAGAAAGAGGTGAA+GGG | 0.485513 | 5_4:-28488347 | None:intergenic |
| GGGCATCCTTCATTCTTTCG+TGG | 0.485958 | 5_4:-28489555 | None:intergenic |
| CTATGAACGTAGTTCAACTT+GGG | 0.491056 | 5_4:+28488811 | Msa0847100:CDS |
| TGTCAAACAATCTTCAGCAC+AGG | 0.492667 | 5_4:-28489830 | None:intergenic |
| ATCAAGTATGCAATTGATTG+TGG | 0.493118 | 5_4:+28492026 | Msa0847100:CDS |
| TTAGAGAGAGAAAGAGGTGA+AGG | 0.493180 | 5_4:-28488348 | None:intergenic |
| GGCCCATCTCCCTCTGATGA+TGG | 0.494492 | 5_4:+28489068 | Msa0847100:CDS |
| GAGCCCTGAGAAATTTGTTA+GGG | 0.499725 | 5_4:+28489582 | Msa0847100:CDS |
| GGTGGTGGTGAAGCCGAAAT+CGG | 0.500614 | 5_4:+28489340 | Msa0847100:CDS |
| CAACTACTTCGGGTTCGTAA+TGG | 0.505814 | 5_4:-28491266 | None:intergenic |
| CTTTCCTCCGCAGGAAGATA+CGG | 0.508914 | 5_4:+28492085 | Msa0847100:CDS |
| AACCATCATCAGAGGGAGAT+GGG | 0.509553 | 5_4:-28489070 | None:intergenic |
| TCAAGTATGCAATTGATTGT+GGG | 0.509821 | 5_4:+28492027 | Msa0847100:CDS |
| AGTACGTGGCTTTCCTCCGC+AGG | 0.509991 | 5_4:+28492076 | Msa0847100:CDS |
| GGTGTCTCACTGATGAAGAT+TGG | 0.511624 | 5_4:+28489775 | Msa0847100:CDS |
| AAAGAATGAAGGATGCCCTC+TGG | 0.513107 | 5_4:+28489560 | Msa0847100:CDS |
| TAAGGCATCTAAACCTAAGA+AGG | 0.514106 | 5_4:+28488950 | Msa0847100:CDS |
| ATTGATAGTAAAAGGGCTAC+AGG | 0.515434 | 5_4:+28489754 | Msa0847100:CDS |
| GATAAAGGGTACCTGGGAAG+TGG | 0.519562 | 5_4:-28488493 | None:intergenic |
| GAACCATCATCAGAGGGAGA+TGG | 0.523484 | 5_4:-28489071 | None:intergenic |
| TCTTCCTGAGAGTGCCATAG+TGG | 0.525516 | 5_4:-28491108 | None:intergenic |
| GCCTTCCTTTATTGAAAATG+TGG | 0.526297 | 5_4:+28489375 | Msa0847100:CDS |
| TATGCCACTATGGCACTCTC+AGG | 0.527107 | 5_4:+28491104 | Msa0847100:CDS |
| CATACTTGATGCTATGCTCT+AGG | 0.530128 | 5_4:-28492013 | None:intergenic |
| CATAACAATTGAAATTTCAA+GGG | 0.533566 | 5_4:-28492380 | None:intergenic |
| CGATGGTGCTGTTAGCGGGA+TGG | 0.537947 | 5_4:+28491368 | Msa0847100:CDS |
| ATTGTGGGGTAATAGATCAA+TGG | 0.539254 | 5_4:+28492042 | Msa0847100:CDS |
| AATTGTCCCTTCTGGAGACT+CGG | 0.539534 | 5_4:-28489006 | None:intergenic |
| TTCTTAGAACCATCATCAGA+GGG | 0.544165 | 5_4:-28489077 | None:intergenic |
| TGAGAGTGCCATAGTGGCAT+AGG | 0.545969 | 5_4:-28491102 | None:intergenic |
| TGGATCTCATGTGACGATCA+AGG | 0.546279 | 5_4:-28491014 | None:intergenic |
| GTAATAGATCAATGGATACT+TGG | 0.547151 | 5_4:+28492050 | Msa0847100:CDS |
| ATTGCTCTTGCTAGTTTGGG+TGG | 0.547236 | 5_4:+28489634 | Msa0847100:CDS |
| TACAAAACTGATGTGTTACT+TGG | 0.552563 | 5_4:-28492201 | None:intergenic |
| AAATATTGACGTGTTGAAAG+AGG | 0.554016 | 5_4:+28489864 | Msa0847100:CDS |
| GCTGACATGTCACGAGTGAA+AGG | 0.554856 | 5_4:-28491408 | None:intergenic |
| TGAACTCCACGAAAGAATGA+AGG | 0.555890 | 5_4:+28489549 | Msa0847100:CDS |
| TGATCTATAAGCCTATTAGC+AGG | 0.557690 | 5_4:-28489526 | None:intergenic |
| GGTGGAAAAGAAAACAACTA+AGG | 0.557886 | 5_4:+28488932 | Msa0847100:CDS |
| TTCCTTTATTGAAAATGTGG+AGG | 0.558662 | 5_4:+28489378 | Msa0847100:CDS |
| CTGACATGTCACGAGTGAAA+GGG | 0.562056 | 5_4:-28491407 | None:intergenic |
| GGTCAGCATTGATAGTAAAA+GGG | 0.566795 | 5_4:+28489747 | Msa0847100:CDS |
| GAGCTCGATGGTGCTGTTAG+CGG | 0.567047 | 5_4:+28491363 | Msa0847100:CDS |
| AAGAGCAATGGCAACACTAC+CGG | 0.568293 | 5_4:-28489620 | None:intergenic |
| CTTCTTAGAACCATCATCAG+AGG | 0.575229 | 5_4:-28489078 | None:intergenic |
| ACCTAAAGAGGAGAATAAAG+AGG | 0.575238 | 5_4:+28489294 | Msa0847100:CDS |
| TAGAGCCAGTTAGTTGAACC+AGG | 0.575401 | 5_4:+28492171 | Msa0847100:exon |
| GTGTTACTTGGTGTATCACC+TGG | 0.577764 | 5_4:-28492189 | None:intergenic |
| GACATGTCAGCATCTGGAGA+CGG | 0.587386 | 5_4:+28491420 | Msa0847100:CDS |
| TTAACATAGAGTACTAGCTA+AGG | 0.589131 | 5_4:-28488386 | None:intergenic |
| CTTGATAGCTTGCAATGTCG+TGG | 0.594424 | 5_4:-28491034 | None:intergenic |
| GAGCCCTAACAAATTTCTCA+GGG | 0.595315 | 5_4:-28489585 | None:intergenic |
| GCAAAGGAAAGAGACGACAT+TGG | 0.595465 | 5_4:-28488460 | None:intergenic |
| GTCAAACAATCTTCAGCACA+GGG | 0.597382 | 5_4:-28489829 | None:intergenic |
| TGTGTAGGTGTAACTTGACT+TGG | 0.598295 | 5_4:+28488772 | Msa0847100:intron |
| GAAATTTGTTAGGGCTCCCG+GGG | 0.599290 | 5_4:+28489591 | Msa0847100:CDS |
| AAGAACTAGAGTTCCTATGC+GGG | 0.599516 | 5_4:+28491190 | Msa0847100:CDS |
| CCAAAGCAACAAACAAGAGG+AGG | 0.601556 | 5_4:-28489469 | None:intergenic |
| CTGGTCATGTTGCAATGGCT+AGG | 0.601708 | 5_4:+28488856 | Msa0847100:CDS |
| TCGAAAGCCGAGTCTCCAGA+AGG | 0.601773 | 5_4:+28488999 | Msa0847100:CDS |
| TGGATACTTGGTCGAGTACG+TGG | 0.602249 | 5_4:+28492062 | Msa0847100:CDS |
| CAAGTATGCAATTGATTGTG+GGG | 0.603065 | 5_4:+28492028 | Msa0847100:CDS |
| AGACGTTCATTCAGCTAGTG+TGG | 0.603200 | 5_4:+28491136 | Msa0847100:CDS |
| GCTAGGAAGAAAGCTTCACT+AGG | 0.607054 | 5_4:+28488873 | Msa0847100:CDS |
| CTATTAGCAGGCCTACCTGA+AGG | 0.617750 | 5_4:-28489514 | None:intergenic |
| GAGGACATAAGTGATACTTA+CGG | 0.618077 | 5_4:+28489442 | Msa0847100:CDS |
| ATCTAAACCTAAGAAGGCGT+CGG | 0.619978 | 5_4:+28488956 | Msa0847100:CDS |
| AAGGCGAAGGAAACCTAAAG+AGG | 0.620452 | 5_4:+28489282 | Msa0847100:CDS |
| TAGTGAAAATGAACCTGTGG+TGG | 0.621542 | 5_4:+28488914 | Msa0847100:CDS |
| AAATTTCTCAGGGCTCCAGA+GGG | 0.621942 | 5_4:-28489575 | None:intergenic |
| AAGTGGAAGAAAGTGAGCAA+AGG | 0.622891 | 5_4:-28488476 | None:intergenic |
| CAAATTTCTCAGGGCTCCAG+AGG | 0.624526 | 5_4:-28489576 | None:intergenic |
| ACCCAAACTAGCAAGAGCAA+TGG | 0.627349 | 5_4:-28489632 | None:intergenic |
| CGAAAGCCGAGTCTCCAGAA+GGG | 0.633282 | 5_4:+28489000 | Msa0847100:CDS |
| GTAATGGACAAACTTTGACC+TGG | 0.633703 | 5_4:-28491250 | None:intergenic |
| GCTCCAAAGCAACAAACAAG+AGG | 0.633915 | 5_4:-28489472 | None:intergenic |
| AGTGCCATAGTGGCATAGGA+AGG | 0.633942 | 5_4:-28491098 | None:intergenic |
| TATGAACGTAGTTCAACTTG+GGG | 0.642217 | 5_4:+28488812 | Msa0847100:CDS |
| ACGAGTGAAAGGGGTAATTG+GGG | 0.647030 | 5_4:-28491397 | None:intergenic |
| CGATTACAGAAACAGAGTAT+CGG | 0.647080 | 5_4:+28492141 | Msa0847100:CDS |
| ACATAAGTGATACTTACGGT+TGG | 0.647130 | 5_4:+28489446 | Msa0847100:CDS |
| TAAATCTGGTCATGTTGCAA+TGG | 0.648584 | 5_4:+28488851 | Msa0847100:CDS |
| TGACATGTCACGAGTGAAAG+GGG | 0.649548 | 5_4:-28491406 | None:intergenic |
| TCCTCCGTATCTTCCTGCGG+AGG | 0.649919 | 5_4:-28492089 | None:intergenic |
| TGGTGCTGTTAGCGGGATGG+AGG | 0.653175 | 5_4:+28491371 | Msa0847100:CDS |
| ATGTCCTCCGTATCTTCCTG+CGG | 0.655143 | 5_4:-28492092 | None:intergenic |
| AAATAATGTTCAAACCCGAT+CGG | 0.661932 | 5_4:+28489726 | Msa0847100:CDS |
| TACTACACCACAGAGCTCGA+TGG | 0.665232 | 5_4:+28491351 | Msa0847100:CDS |
| CAGATGGTGTTATCCCGCAT+AGG | 0.666123 | 5_4:-28491203 | None:intergenic |
| GCCTAGTGAAAATGAACCTG+TGG | 0.674022 | 5_4:+28488911 | Msa0847100:CDS |
| TCCTCCGCAGGAAGATACGG+AGG | 0.681111 | 5_4:+28492088 | Msa0847100:CDS |
| AAGAGGTGAAGGGTTTAACA+AGG | 0.685013 | 5_4:-28488337 | None:intergenic |
| CAAGAACTAGAGTTCCTATG+CGG | 0.692513 | 5_4:+28491189 | Msa0847100:CDS |
| AACAGCACCATCGAGCTCTG+TGG | 0.705418 | 5_4:-28491358 | None:intergenic |
| ATGAACGTAGTTCAACTTGG+GGG | 0.712399 | 5_4:+28488813 | Msa0847100:CDS |
| AAATTTGTTAGGGCTCCCGG+GGG | 0.729951 | 5_4:+28489592 | Msa0847100:CDS |
| GTGGAGGATGAGACTGACGA+TGG | 0.806142 | 5_4:+28489394 | Msa0847100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATTAAAAATCAAAAT+TGG | - | chr5_4:28488575-28488594 | None:intergenic | 10.0% |
| !!! | AATTTTGATTTTTAATCAAA+TGG | + | chr5_4:28488574-28488593 | Msa0847100:intron | 10.0% |
| !!! | ATTTTGATTTTTAATCAAAT+GGG | + | chr5_4:28488575-28488594 | Msa0847100:intron | 10.0% |
| !! | AAAATATAATTCTTCTATAA+AGG | + | chr5_4:28488627-28488646 | Msa0847100:intron | 10.0% |
| !! | AAATTAGTAGTATTATAATA+AGG | + | chr5_4:28490304-28490323 | Msa0847100:intron | 10.0% |
| !! | AATTAGTAGTATTATAATAA+GGG | + | chr5_4:28490305-28490324 | Msa0847100:intron | 10.0% |
| !!! | AATATAATTTTAGAGGATAA+AGG | + | chr5_4:28489319-28489338 | Msa0847100:CDS | 15.0% |
| !! | ATTAGTAGTATTATAATAAG+GGG | + | chr5_4:28490306-28490325 | Msa0847100:intron | 15.0% |
| !! | ATAGATTTCAAGAAAAAATA+GGG | - | chr5_4:28490680-28490699 | None:intergenic | 15.0% |
| !! | ATTTCTACATTATTTAACAA+GGG | - | chr5_4:28491521-28491540 | None:intergenic | 15.0% |
| !! | AAGAATAATTTAATATGTGA+CGG | + | chr5_4:28491562-28491581 | Msa0847100:intron | 15.0% |
| !! | ATAAAATGTGTATAACAAAT+TGG | - | chr5_4:28492360-28492379 | None:intergenic | 15.0% |
| !!! | TTTTTAAGACTACAGATAAA+GGG | - | chr5_4:28488510-28488529 | None:intergenic | 20.0% |
| !!! | TTTTTTAAGACTACAGATAA+AGG | - | chr5_4:28488511-28488530 | None:intergenic | 20.0% |
| !! | CACTTATACATTAAAAAAAC+AGG | + | chr5_4:28490181-28490200 | Msa0847100:intron | 20.0% |
| !! | ATGTATCTAGTAATTTGAAA+TGG | + | chr5_4:28490351-28490370 | Msa0847100:intron | 20.0% |
| !!! | TGTATCTAGTAATTTGAAAT+GGG | + | chr5_4:28490352-28490371 | Msa0847100:intron | 20.0% |
| !!! | TCTAAAATGTGCTTATAATT+CGG | + | chr5_4:28490403-28490422 | Msa0847100:intron | 20.0% |
| !! | GATAGATTTCAAGAAAAAAT+AGG | - | chr5_4:28490681-28490700 | None:intergenic | 20.0% |
| !! | TACTTAACAGTTAACATATA+AGG | + | chr5_4:28490824-28490843 | Msa0847100:intron | 20.0% |
| !!! | TTTATGTTTTTCAAATGGAT+TGG | - | chr5_4:28491493-28491512 | None:intergenic | 20.0% |
| !! | AATCCATTTGAAAAACATAA+AGG | + | chr5_4:28491492-28491511 | Msa0847100:intron | 20.0% |
| !!! | TTTCCTTTATGTTTTTCAAA+TGG | - | chr5_4:28491498-28491517 | None:intergenic | 20.0% |
| !! | GATTTCTACATTATTTAACA+AGG | - | chr5_4:28491522-28491541 | None:intergenic | 20.0% |
| !!! | ATTTTTGCTATCTTATTTTC+CGG | + | chr5_4:28491644-28491663 | Msa0847100:intron | 20.0% |
| !!! | AATTTTGAAGTGAGTATGTT+GGG | + | chr5_4:28488665-28488684 | Msa0847100:intron | 25.0% |
| !! | AGAGGAGAATATAATTTTAG+AGG | + | chr5_4:28489312-28489331 | Msa0847100:CDS | 25.0% |
| !!! | ATAATTTTAGAGGATAAAGG+TGG | + | chr5_4:28489322-28489341 | Msa0847100:CDS | 25.0% |
| !!! | CATCAATTTCAAGTTCAATA+AGG | - | chr5_4:28489991-28490010 | None:intergenic | 25.0% |
| ! | TATAAGTGAAAATGACGAAA+GGG | - | chr5_4:28490169-28490188 | None:intergenic | 25.0% |
| ! | GTAATAGTCATACACAAAAA+TGG | - | chr5_4:28490224-28490243 | None:intergenic | 25.0% |
| !! | GTATCTAGTAATTTGAAATG+GGG | + | chr5_4:28490353-28490372 | Msa0847100:intron | 25.0% |
| !!! | ACATTTTAGAGCGAAAAAAT+TGG | - | chr5_4:28490393-28490412 | None:intergenic | 25.0% |
| ! | CTAAAATGTGCTTATAATTC+GGG | + | chr5_4:28490404-28490423 | Msa0847100:intron | 25.0% |
| !! | AACATGAATGATTTTGTAGA+TGG | + | chr5_4:28490520-28490539 | Msa0847100:intron | 25.0% |
| !!! | TCACTAAATAGCTTAGTTTT+GGG | - | chr5_4:28490570-28490589 | None:intergenic | 25.0% |
| !! | TTCACTAAATAGCTTAGTTT+TGG | - | chr5_4:28490571-28490590 | None:intergenic | 25.0% |
| ! | CAAATGATTATTGTGTGAAA+GGG | - | chr5_4:28490620-28490639 | None:intergenic | 25.0% |
| ! | CTTTCACACAATAATCATTT+GGG | + | chr5_4:28490619-28490638 | Msa0847100:intron | 25.0% |
| ! | CTATCATTTGTTTAGAAACA+TGG | + | chr5_4:28490696-28490715 | Msa0847100:intron | 25.0% |
| ! | TTAATAGACTCAATAGCATT+TGG | - | chr5_4:28490945-28490964 | None:intergenic | 25.0% |
| !!! | AAAGTTTTGTTTGTGACTAA+TGG | + | chr5_4:28491312-28491331 | Msa0847100:CDS | 25.0% |
| ! | ATTATTCTTCCCATAATAGT+GGG | - | chr5_4:28491551-28491570 | None:intergenic | 25.0% |
| ! | AATTATTCTTCCCATAATAG+TGG | - | chr5_4:28491552-28491571 | None:intergenic | 25.0% |
| ! | AAAATAAGCAGATTCTTTGT+TGG | + | chr5_4:28491667-28491686 | Msa0847100:intron | 25.0% |
| !! | TTTCCTTTCATAGTGATTTT+AGG | + | chr5_4:28491741-28491760 | Msa0847100:intron | 25.0% |
| !!! | TAATCGATTTTATGCCATAA+GGG | - | chr5_4:28492127-28492146 | None:intergenic | 25.0% |
| !! | TATGTGTTTTCAATTGATAG+AGG | + | chr5_4:28492281-28492300 | Msa0847100:three_prime_UTR | 25.0% |
| ! | TTAACATAGAGTACTAGCTA+AGG | - | chr5_4:28488389-28488408 | None:intergenic | 30.0% |
| !!! | CAATTTTGAAGTGAGTATGT+TGG | + | chr5_4:28488664-28488683 | Msa0847100:intron | 30.0% |
| TTAGTGTATAATTCTTGTGC+TGG | + | chr5_4:28488715-28488734 | Msa0847100:intron | 30.0% | |
| CTCAAAATTCAGTGTAAATC+TGG | + | chr5_4:28488837-28488856 | Msa0847100:CDS | 30.0% | |
| GTGTTAGTTAAACGTTGATA+TGG | + | chr5_4:28489191-28489210 | Msa0847100:intron | 30.0% | |
| AGGAAGTGAAAAAAGTTACA+AGG | + | chr5_4:28489263-28489282 | Msa0847100:CDS | 30.0% | |
| ! | TCCACATTTTCAATAAAGGA+AGG | - | chr5_4:28489379-28489398 | None:intergenic | 30.0% |
| TTCCTTTATTGAAAATGTGG+AGG | + | chr5_4:28489378-28489397 | Msa0847100:CDS | 30.0% | |
| ! | ATCCTCCACATTTTCAATAA+AGG | - | chr5_4:28489383-28489402 | None:intergenic | 30.0% |
| TTGGATCTGGAAAAATATGA+TGG | + | chr5_4:28489418-28489437 | Msa0847100:CDS | 30.0% | |
| AAACTTGCAGATGATGAATA+TGG | + | chr5_4:28489676-28489695 | Msa0847100:CDS | 30.0% | |
| AAATAATGTTCAAACCCGAT+CGG | + | chr5_4:28489726-28489745 | Msa0847100:CDS | 30.0% | |
| AAATATTGACGTGTTGAAAG+AGG | + | chr5_4:28489864-28489883 | Msa0847100:CDS | 30.0% | |
| ! | TTGTTAGAATGATGACGAAA+GGG | - | chr5_4:28490082-28490101 | None:intergenic | 30.0% |
| ! | TTTGTTAGAATGATGACGAA+AGG | - | chr5_4:28490083-28490102 | None:intergenic | 30.0% |
| ATAAGTGAAAATGACGAAAG+GGG | - | chr5_4:28490168-28490187 | None:intergenic | 30.0% | |
| GTATAAGTGAAAATGACGAA+AGG | - | chr5_4:28490170-28490189 | None:intergenic | 30.0% | |
| TCTTGAGAGATGAAAAATCA+GGG | - | chr5_4:28490279-28490298 | None:intergenic | 30.0% | |
| ATCTTGAGAGATGAAAAATC+AGG | - | chr5_4:28490280-28490299 | None:intergenic | 30.0% | |
| AACGATATTGTCTATTGCAA+TGG | + | chr5_4:28490442-28490461 | Msa0847100:intron | 30.0% | |
| TATGCACGTTTGAACTAATA+TGG | - | chr5_4:28490480-28490499 | None:intergenic | 30.0% | |
| CCAAATGATTATTGTGTGAA+AGG | - | chr5_4:28490621-28490640 | None:intergenic | 30.0% | |
| CCTTTCACACAATAATCATT+TGG | + | chr5_4:28490618-28490637 | Msa0847100:intron | 30.0% | |
| !!! | CAGCATTACTTTTTGGTTTA+TGG | - | chr5_4:28490777-28490796 | None:intergenic | 30.0% |
| AAACCAAAAAGTAATGCTGT+TGG | + | chr5_4:28490778-28490797 | Msa0847100:intron | 30.0% | |
| !!! | TCTGTTTTATTTTAGCTGCT+TGG | + | chr5_4:28490904-28490923 | Msa0847100:intron | 30.0% |
| !!! | CTGTTTTATTTTAGCTGCTT+GGG | + | chr5_4:28490905-28490924 | Msa0847100:intron | 30.0% |
| !! | ATCAAGATTGCAAAGCATTT+TGG | + | chr5_4:28491051-28491070 | Msa0847100:CDS | 30.0% |
| !! | CAAAGAATCTGCTTATTTTC+CGG | - | chr5_4:28491666-28491685 | None:intergenic | 30.0% |
| TCTCCTAAAATCACTATGAA+AGG | - | chr5_4:28491747-28491766 | None:intergenic | 30.0% | |
| AGACAATATCACGATTGAAT+CGG | + | chr5_4:28491764-28491783 | Msa0847100:intron | 30.0% | |
| CCTTTATCAGTTATCAAATC+AGG | - | chr5_4:28491990-28492009 | None:intergenic | 30.0% | |
| ! | CCTGATTTGATAACTGATAA+AGG | + | chr5_4:28491987-28492006 | Msa0847100:CDS | 30.0% |
| ATCAAGTATGCAATTGATTG+TGG | + | chr5_4:28492026-28492045 | Msa0847100:CDS | 30.0% | |
| TCAAGTATGCAATTGATTGT+GGG | + | chr5_4:28492027-28492046 | Msa0847100:CDS | 30.0% | |
| GTAATAGATCAATGGATACT+TGG | + | chr5_4:28492050-28492069 | Msa0847100:CDS | 30.0% | |
| !! | GTAATCGATTTTATGCCATA+AGG | - | chr5_4:28492128-28492147 | None:intergenic | 30.0% |
| ! | TACAAAACTGATGTGTTACT+TGG | - | chr5_4:28492204-28492223 | None:intergenic | 30.0% |
| AAACCTAAGAACTAAGTCTA+AGG | - | chr5_4:28492315-28492334 | None:intergenic | 30.0% | |
| !! | TTTGCTTTAGAGAGAGAAAG+AGG | - | chr5_4:28488357-28488376 | None:intergenic | 35.0% |
| GACAAGTTTGTGTTCTGTTT+AGG | - | chr5_4:28488420-28488439 | None:intergenic | 35.0% | |
| !! | TTGGGTTTCAGTTCAAGTTT+TGG | + | chr5_4:28488683-28488702 | Msa0847100:intron | 35.0% |
| TCTTGTATTTGCAACTGTGT+AGG | + | chr5_4:28488757-28488776 | Msa0847100:intron | 35.0% | |
| TCTATGAACGTAGTTCAACT+TGG | + | chr5_4:28488810-28488829 | Msa0847100:CDS | 35.0% | |
| CTATGAACGTAGTTCAACTT+GGG | + | chr5_4:28488811-28488830 | Msa0847100:CDS | 35.0% | |
| TATGAACGTAGTTCAACTTG+GGG | + | chr5_4:28488812-28488831 | Msa0847100:CDS | 35.0% | |
| TAAATCTGGTCATGTTGCAA+TGG | + | chr5_4:28488851-28488870 | Msa0847100:CDS | 35.0% | |
| GGTGGAAAAGAAAACAACTA+AGG | + | chr5_4:28488932-28488951 | Msa0847100:CDS | 35.0% | |
| ! | TAAGGCATCTAAACCTAAGA+AGG | + | chr5_4:28488950-28488969 | Msa0847100:CDS | 35.0% |
| AACAAATCAATTGTCCCTTC+TGG | - | chr5_4:28489017-28489036 | None:intergenic | 35.0% | |
| !! | AGAAGGGACAATTGATTTGT+TGG | + | chr5_4:28489016-28489035 | Msa0847100:CDS | 35.0% |
| GATAGTGCTTCTATTGTAGA+AGG | + | chr5_4:28489047-28489066 | Msa0847100:CDS | 35.0% | |
| TTCTTAGAACCATCATCAGA+GGG | - | chr5_4:28489080-28489099 | None:intergenic | 35.0% | |
| AACACGAAAGACTCGAAAAA+AGG | + | chr5_4:28489103-28489122 | Msa0847100:CDS | 35.0% | |
| ACACGAAAGACTCGAAAAAA+GGG | + | chr5_4:28489104-28489123 | Msa0847100:CDS | 35.0% | |
| GGAAGAAGAGAAAGAAGTTA+AGG | + | chr5_4:28489243-28489262 | Msa0847100:CDS | 35.0% | |
| TGAAAAAAGTTACAAGGCGA+AGG | + | chr5_4:28489269-28489288 | Msa0847100:CDS | 35.0% | |
| ACCTAAAGAGGAGAATAAAG+AGG | + | chr5_4:28489294-28489313 | Msa0847100:CDS | 35.0% | |
| TCCTCTTTATTCTCCTCTTT+AGG | - | chr5_4:28489298-28489317 | None:intergenic | 35.0% | |
| !! | ATTTTAGAGGATAAAGGTGG+TGG | + | chr5_4:28489325-28489344 | Msa0847100:CDS | 35.0% |
| GCCTTCCTTTATTGAAAATG+TGG | + | chr5_4:28489375-28489394 | Msa0847100:CDS | 35.0% | |
| ! | TCTGGAAAAATATGATGGAG+AGG | + | chr5_4:28489423-28489442 | Msa0847100:CDS | 35.0% |
| GAGGACATAAGTGATACTTA+CGG | + | chr5_4:28489442-28489461 | Msa0847100:CDS | 35.0% | |
| ACATAAGTGATACTTACGGT+TGG | + | chr5_4:28489446-28489465 | Msa0847100:CDS | 35.0% | |
| TGATCTATAAGCCTATTAGC+AGG | - | chr5_4:28489529-28489548 | None:intergenic | 35.0% | |
| !! | GGTCAGCATTGATAGTAAAA+GGG | + | chr5_4:28489747-28489766 | Msa0847100:CDS | 35.0% |
| ! | ATTGATAGTAAAAGGGCTAC+AGG | + | chr5_4:28489754-28489773 | Msa0847100:CDS | 35.0% |
| CACTGATGAAGATTGGTAAA+AGG | + | chr5_4:28489782-28489801 | Msa0847100:CDS | 35.0% | |
| ATATGTTCTAGCCTCATCAT+TGG | + | chr5_4:28489954-28489973 | Msa0847100:intron | 35.0% | |
| ! | TTTGAAATGGGGCTTATGTT+TGG | + | chr5_4:28490364-28490383 | Msa0847100:intron | 35.0% |
| !!! | TAGCTTAGTTTTGGGATAGT+TGG | - | chr5_4:28490562-28490581 | None:intergenic | 35.0% |
| TTAGAAACATGGCGACAATA+AGG | + | chr5_4:28490707-28490726 | Msa0847100:intron | 35.0% | |
| !! | CAACCAACAGCATTACTTTT+TGG | - | chr5_4:28490784-28490803 | None:intergenic | 35.0% |
| ATTAAGAACACATCTCATGC+AGG | + | chr5_4:28490960-28490979 | Msa0847100:intron | 35.0% | |
| !! | TTGGTGTCAAATTCTTCAGA+TGG | - | chr5_4:28491222-28491241 | None:intergenic | 35.0% |
| ! | TTAAGATTTTCGTGCCATAG+TGG | - | chr5_4:28491294-28491313 | None:intergenic | 35.0% |
| TGTGGTGTAGTAATGTATCT+TGG | - | chr5_4:28491343-28491362 | None:intergenic | 35.0% | |
| AATCATGTCTCCCACTATTA+TGG | + | chr5_4:28491538-28491557 | Msa0847100:intron | 35.0% | |
| ATCATGTCTCCCACTATTAT+GGG | + | chr5_4:28491539-28491558 | Msa0847100:intron | 35.0% | |
| ! | TCCTTGTTATGGCTTTCATT+AGG | - | chr5_4:28491790-28491809 | None:intergenic | 35.0% |
| !! | TGAAACATCTCTCTAAAGCT+AGG | + | chr5_4:28491905-28491924 | Msa0847100:intron | 35.0% |
| CAAGTATGCAATTGATTGTG+GGG | + | chr5_4:28492028-28492047 | Msa0847100:CDS | 35.0% | |
| ATTGTGGGGTAATAGATCAA+TGG | + | chr5_4:28492042-28492061 | Msa0847100:CDS | 35.0% | |
| CGATTACAGAAACAGAGTAT+CGG | + | chr5_4:28492141-28492160 | Msa0847100:CDS | 35.0% | |
| ! | TTGCCTTAGACTTAGTTCTT+AGG | + | chr5_4:28492309-28492328 | Msa0847100:three_prime_UTR | 35.0% |
| AAGAGGTGAAGGGTTTAACA+AGG | - | chr5_4:28488340-28488359 | None:intergenic | 40.0% | |
| TAGAGAGAGAAAGAGGTGAA+GGG | - | chr5_4:28488350-28488369 | None:intergenic | 40.0% | |
| TTAGAGAGAGAAAGAGGTGA+AGG | - | chr5_4:28488351-28488370 | None:intergenic | 40.0% | |
| AAGTGGAAGAAAGTGAGCAA+AGG | - | chr5_4:28488479-28488498 | None:intergenic | 40.0% | |
| !! | ACTACAGATAAAGGGTACCT+GGG | - | chr5_4:28488502-28488521 | None:intergenic | 40.0% |
| TGTGTAGGTGTAACTTGACT+TGG | + | chr5_4:28488772-28488791 | Msa0847100:intron | 40.0% | |
| ATGAACGTAGTTCAACTTGG+GGG | + | chr5_4:28488813-28488832 | Msa0847100:CDS | 40.0% | |
| ! | ACCACAGGTTCATTTTCACT+AGG | - | chr5_4:28488915-28488934 | None:intergenic | 40.0% |
| TAGTGAAAATGAACCTGTGG+TGG | + | chr5_4:28488914-28488933 | Msa0847100:CDS | 40.0% | |
| !! | GTTGTTTTCTTTTCCACCAC+AGG | - | chr5_4:28488930-28488949 | None:intergenic | 40.0% |
| ! | ATCTAAACCTAAGAAGGCGT+CGG | + | chr5_4:28488956-28488975 | Msa0847100:CDS | 40.0% |
| CTTCTTAGAACCATCATCAG+AGG | - | chr5_4:28489081-28489100 | None:intergenic | 40.0% | |
| !! | CTCATCTATGTCACCGATTT+CGG | - | chr5_4:28489356-28489375 | None:intergenic | 40.0% |
| TGAACTCCACGAAAGAATGA+AGG | + | chr5_4:28489549-28489568 | Msa0847100:CDS | 40.0% | |
| !! | GAGCCCTGAGAAATTTGTTA+GGG | + | chr5_4:28489582-28489601 | Msa0847100:CDS | 40.0% |
| GAGCCCTAACAAATTTCTCA+GGG | - | chr5_4:28489588-28489607 | None:intergenic | 40.0% | |
| TACTATCAATGCTGACCGAT+CGG | - | chr5_4:28489744-28489763 | None:intergenic | 40.0% | |
| !! | CGGTCAGCATTGATAGTAAA+AGG | + | chr5_4:28489746-28489765 | Msa0847100:CDS | 40.0% |
| GTCAAACAATCTTCAGCACA+GGG | - | chr5_4:28489832-28489851 | None:intergenic | 40.0% | |
| TGTCAAACAATCTTCAGCAC+AGG | - | chr5_4:28489833-28489852 | None:intergenic | 40.0% | |
| TTGACGTGTTGAAAGAGGTA+CGG | + | chr5_4:28489869-28489888 | Msa0847100:intron | 40.0% | |
| CTGCTATATCACCAATGATG+AGG | - | chr5_4:28489968-28489987 | None:intergenic | 40.0% | |
| TCTTTGCTCTGTCAATAGTC+AGG | - | chr5_4:28490645-28490664 | None:intergenic | 40.0% | |
| AACATGGCGACAATAAGGAT+TGG | + | chr5_4:28490712-28490731 | Msa0847100:intron | 40.0% | |
| GTTGGTTGAAAGCTCATGAA+TGG | + | chr5_4:28490796-28490815 | Msa0847100:intron | 40.0% | |
| !! | GATTGCAAAGCATTTTGGAG+CGG | + | chr5_4:28491056-28491075 | Msa0847100:CDS | 40.0% |
| TAAACCTTCCTATGCCACTA+TGG | + | chr5_4:28491094-28491113 | Msa0847100:CDS | 40.0% | |
| CAAGAACTAGAGTTCCTATG+CGG | + | chr5_4:28491189-28491208 | Msa0847100:CDS | 40.0% | |
| AAGAACTAGAGTTCCTATGC+GGG | + | chr5_4:28491190-28491209 | Msa0847100:CDS | 40.0% | |
| TTGACACCAAAAACAATGCC+AGG | + | chr5_4:28491232-28491251 | Msa0847100:CDS | 40.0% | |
| ! | CTTTGACCTGGCATTGTTTT+TGG | - | chr5_4:28491241-28491260 | None:intergenic | 40.0% |
| !! | GTAATGGACAAACTTTGACC+TGG | - | chr5_4:28491253-28491272 | None:intergenic | 40.0% |
| CTTTGTTGCATTGCCTCAAA+AGG | - | chr5_4:28491595-28491614 | None:intergenic | 40.0% | |
| AAGCAGATTCTTTGTTGGCA+AGG | + | chr5_4:28491672-28491691 | Msa0847100:intron | 40.0% | |
| GCCTAATGAAAGCCATAACA+AGG | + | chr5_4:28491786-28491805 | Msa0847100:intron | 40.0% | |
| GTAATATAAGCCCTGAGTGT+TGG | - | chr5_4:28491814-28491833 | None:intergenic | 40.0% | |
| AGCTATCATGCGAATGTTGA+TGG | + | chr5_4:28491959-28491978 | Msa0847100:intron | 40.0% | |
| CATACTTGATGCTATGCTCT+AGG | - | chr5_4:28492016-28492035 | None:intergenic | 40.0% | |
| ! | GATTTTATGCCATAAGGGTC+AGG | - | chr5_4:28492122-28492141 | None:intergenic | 40.0% |
| TATCACCTGGTTCAACTAAC+TGG | - | chr5_4:28492179-28492198 | None:intergenic | 40.0% | |
| GCAAAGGAAAGAGACGACAT+TGG | - | chr5_4:28488463-28488482 | None:intergenic | 45.0% | |
| !! | GACTACAGATAAAGGGTACC+TGG | - | chr5_4:28488503-28488522 | None:intergenic | 45.0% |
| GCTAGGAAGAAAGCTTCACT+AGG | + | chr5_4:28488873-28488892 | Msa0847100:CDS | 45.0% | |
| GCCTAGTGAAAATGAACCTG+TGG | + | chr5_4:28488911-28488930 | Msa0847100:CDS | 45.0% | |
| ! | AATTGTCCCTTCTGGAGACT+CGG | - | chr5_4:28489009-28489028 | None:intergenic | 45.0% |
| AACCATCATCAGAGGGAGAT+GGG | - | chr5_4:28489073-28489092 | None:intergenic | 45.0% | |
| !! | TGCATCTAGTTCTGCTGCTT+TGG | + | chr5_4:28489222-28489241 | Msa0847100:CDS | 45.0% |
| AAGGCGAAGGAAACCTAAAG+AGG | + | chr5_4:28489282-28489301 | Msa0847100:CDS | 45.0% | |
| CCAAAGCAACAAACAAGAGG+AGG | - | chr5_4:28489472-28489491 | None:intergenic | 45.0% | |
| ! | CCTCCTCTTGTTTGTTGCTT+TGG | + | chr5_4:28489469-28489488 | Msa0847100:CDS | 45.0% |
| GCTCCAAAGCAACAAACAAG+AGG | - | chr5_4:28489475-28489494 | None:intergenic | 45.0% | |
| ! | CAACATGCTTTTGTGCCTTC+AGG | + | chr5_4:28489499-28489518 | Msa0847100:CDS | 45.0% |
| ! | ATGCTTTTGTGCCTTCAGGT+AGG | + | chr5_4:28489503-28489522 | Msa0847100:CDS | 45.0% |
| AAAGAATGAAGGATGCCCTC+TGG | + | chr5_4:28489560-28489579 | Msa0847100:CDS | 45.0% | |
| AAATTTCTCAGGGCTCCAGA+GGG | - | chr5_4:28489578-28489597 | None:intergenic | 45.0% | |
| ! | GGAGCCCTGAGAAATTTGTT+AGG | + | chr5_4:28489581-28489600 | Msa0847100:CDS | 45.0% |
| GGAGCCCTAACAAATTTCTC+AGG | - | chr5_4:28489589-28489608 | None:intergenic | 45.0% | |
| !! | GAGAAATTTGTTAGGGCTCC+CGG | + | chr5_4:28489589-28489608 | Msa0847100:CDS | 45.0% |
| !! | AGAAATTTGTTAGGGCTCCC+GGG | + | chr5_4:28489590-28489609 | Msa0847100:CDS | 45.0% |
| AAGAGCAATGGCAACACTAC+CGG | - | chr5_4:28489623-28489642 | None:intergenic | 45.0% | |
| TGCCATTGCTCTTGCTAGTT+TGG | + | chr5_4:28489630-28489649 | Msa0847100:CDS | 45.0% | |
| ! | GCCATTGCTCTTGCTAGTTT+GGG | + | chr5_4:28489631-28489650 | Msa0847100:CDS | 45.0% |
| ACCCAAACTAGCAAGAGCAA+TGG | - | chr5_4:28489635-28489654 | None:intergenic | 45.0% | |
| ! | ATTGCTCTTGCTAGTTTGGG+TGG | + | chr5_4:28489634-28489653 | Msa0847100:CDS | 45.0% |
| !!! | GGTGGCAAGGTTGCTTTTAT+GGG | + | chr5_4:28489652-28489671 | Msa0847100:CDS | 45.0% |
| ACTATCAATGCTGACCGATC+GGG | - | chr5_4:28489743-28489762 | None:intergenic | 45.0% | |
| GGTGTCTCACTGATGAAGAT+TGG | + | chr5_4:28489775-28489794 | Msa0847100:CDS | 45.0% | |
| CGAAAGGGCTTACAAATACG+AGG | - | chr5_4:28490067-28490086 | None:intergenic | 45.0% | |
| GGGCTTATGAATAGAGACAG+AGG | - | chr5_4:28490148-28490167 | None:intergenic | 45.0% | |
| GACAATAAGGATTGGACCCT+AGG | + | chr5_4:28490720-28490739 | Msa0847100:intron | 45.0% | |
| TCTACGTCCAACTTGTCCTA+GGG | - | chr5_4:28490739-28490758 | None:intergenic | 45.0% | |
| TTCTACGTCCAACTTGTCCT+AGG | - | chr5_4:28490740-28490759 | None:intergenic | 45.0% | |
| ! | CAAGTTGGACGTAGAAGCTT+TGG | + | chr5_4:28490744-28490763 | Msa0847100:intron | 45.0% |
| TGGATCTCATGTGACGATCA+AGG | - | chr5_4:28491017-28491036 | None:intergenic | 45.0% | |
| ! | CTTGATAGCTTGCAATGTCG+TGG | - | chr5_4:28491037-28491056 | None:intergenic | 45.0% |
| AGACGTTCATTCAGCTAGTG+TGG | + | chr5_4:28491136-28491155 | Msa0847100:CDS | 45.0% | |
| ! | CAACTACTTCGGGTTCGTAA+TGG | - | chr5_4:28491269-28491288 | None:intergenic | 45.0% |
| CATAGTGGTGCAACTACTTC+GGG | - | chr5_4:28491279-28491298 | None:intergenic | 45.0% | |
| CCATAGTGGTGCAACTACTT+CGG | - | chr5_4:28491280-28491299 | None:intergenic | 45.0% | |
| ACGAGTGAAAGGGGTAATTG+GGG | - | chr5_4:28491400-28491419 | None:intergenic | 45.0% | |
| CACGAGTGAAAGGGGTAATT+GGG | - | chr5_4:28491401-28491420 | None:intergenic | 45.0% | |
| TCACGAGTGAAAGGGGTAAT+TGG | - | chr5_4:28491402-28491421 | None:intergenic | 45.0% | |
| TGACATGTCACGAGTGAAAG+GGG | - | chr5_4:28491409-28491428 | None:intergenic | 45.0% | |
| CTGACATGTCACGAGTGAAA+GGG | - | chr5_4:28491410-28491429 | None:intergenic | 45.0% | |
| GAGGCAATGCAACAAAGTAC+TGG | + | chr5_4:28491598-28491617 | Msa0847100:intron | 45.0% | |
| !! | TGAGTGTTGGCTCCTTGTTA+TGG | - | chr5_4:28491801-28491820 | None:intergenic | 45.0% |
| ATAACAAGGAGCCAACACTC+AGG | + | chr5_4:28491800-28491819 | Msa0847100:intron | 45.0% | |
| TAACAAGGAGCCAACACTCA+GGG | + | chr5_4:28491801-28491820 | Msa0847100:intron | 45.0% | |
| GACATTACTCCTGACCCTTA+TGG | + | chr5_4:28492110-28492129 | Msa0847100:CDS | 45.0% | |
| TAGAGCCAGTTAGTTGAACC+AGG | + | chr5_4:28492171-28492190 | Msa0847100:exon | 45.0% | |
| !! | GTGTTACTTGGTGTATCACC+TGG | - | chr5_4:28492192-28492211 | None:intergenic | 45.0% |
| CTCACTTTCTTCCACTTCCC+AGG | + | chr5_4:28488482-28488501 | Msa0847100:CDS | 50.0% | |
| !! | GATAAAGGGTACCTGGGAAG+TGG | - | chr5_4:28488496-28488515 | None:intergenic | 50.0% |
| CTGGTCATGTTGCAATGGCT+AGG | + | chr5_4:28488856-28488875 | Msa0847100:CDS | 50.0% | |
| GAACCATCATCAGAGGGAGA+TGG | - | chr5_4:28489074-28489093 | None:intergenic | 50.0% | |
| GGATGAGACTGACGATGGTT+TGG | + | chr5_4:28489399-28489418 | Msa0847100:CDS | 50.0% | |
| ! | GACTGACGATGGTTTGGATC+TGG | + | chr5_4:28489405-28489424 | Msa0847100:CDS | 50.0% |
| CTATTAGCAGGCCTACCTGA+AGG | - | chr5_4:28489517-28489536 | None:intergenic | 50.0% | |
| CTTCAGGTAGGCCTGCTAAT+AGG | + | chr5_4:28489515-28489534 | Msa0847100:CDS | 50.0% | |
| GGGCATCCTTCATTCTTTCG+TGG | - | chr5_4:28489558-28489577 | None:intergenic | 50.0% | |
| CAAATTTCTCAGGGCTCCAG+AGG | - | chr5_4:28489579-28489598 | None:intergenic | 50.0% | |
| !! | GAAATTTGTTAGGGCTCCCG+GGG | + | chr5_4:28489591-28489610 | Msa0847100:CDS | 50.0% |
| !! | AAATTTGTTAGGGCTCCCGG+GGG | + | chr5_4:28489592-28489611 | Msa0847100:CDS | 50.0% |
| ! | TCTTGCTAGTTTGGGTGGCA+AGG | + | chr5_4:28489639-28489658 | Msa0847100:CDS | 50.0% |
| !!! | GGGTGGCAAGGTTGCTTTTA+TGG | + | chr5_4:28489651-28489670 | Msa0847100:CDS | 50.0% |
| GATTGGACCCTAGGACAAGT+TGG | + | chr5_4:28490729-28490748 | Msa0847100:intron | 50.0% | |
| AGTGCCATAGTGGCATAGGA+AGG | - | chr5_4:28491101-28491120 | None:intergenic | 50.0% | |
| !! | TGAGAGTGCCATAGTGGCAT+AGG | - | chr5_4:28491105-28491124 | None:intergenic | 50.0% |
| TATGCCACTATGGCACTCTC+AGG | + | chr5_4:28491104-28491123 | Msa0847100:CDS | 50.0% | |
| !! | TCTTCCTGAGAGTGCCATAG+TGG | - | chr5_4:28491111-28491130 | None:intergenic | 50.0% |
| !! | CAGATGGTGTTATCCCGCAT+AGG | - | chr5_4:28491206-28491225 | None:intergenic | 50.0% |
| CCGAAGTAGTTGCACCACTA+TGG | + | chr5_4:28491277-28491296 | Msa0847100:CDS | 50.0% | |
| TACTACACCACAGAGCTCGA+TGG | + | chr5_4:28491351-28491370 | Msa0847100:CDS | 50.0% | |
| GCTGACATGTCACGAGTGAA+AGG | - | chr5_4:28491411-28491430 | None:intergenic | 50.0% | |
| ACTCGTGACATGTCAGCATC+TGG | + | chr5_4:28491414-28491433 | Msa0847100:CDS | 50.0% | |
| GACATGTCAGCATCTGGAGA+CGG | + | chr5_4:28491420-28491439 | Msa0847100:CDS | 50.0% | |
| ! | TGACGGTGTGACTCCTTTTG+AGG | + | chr5_4:28491579-28491598 | Msa0847100:intron | 50.0% |
| TGGATACTTGGTCGAGTACG+TGG | + | chr5_4:28492062-28492081 | Msa0847100:CDS | 50.0% | |
| CTTTCCTCCGCAGGAAGATA+CGG | + | chr5_4:28492085-28492104 | Msa0847100:CDS | 50.0% | |
| ATGTCCTCCGTATCTTCCTG+CGG | - | chr5_4:28492095-28492114 | None:intergenic | 50.0% | |
| GTCTTTGCCGACGCCTTCTT+AGG | - | chr5_4:28488966-28488985 | None:intergenic | 55.0% | |
| TCGAAAGCCGAGTCTCCAGA+AGG | + | chr5_4:28488999-28489018 | Msa0847100:CDS | 55.0% | |
| CGAAAGCCGAGTCTCCAGAA+GGG | + | chr5_4:28489000-28489019 | Msa0847100:CDS | 55.0% | |
| ! | GGTGGTGGTGAAGCCGAAAT+CGG | + | chr5_4:28489340-28489359 | Msa0847100:CDS | 55.0% |
| GTGGAGGATGAGACTGACGA+TGG | + | chr5_4:28489394-28489413 | Msa0847100:CDS | 55.0% | |
| AACAGCACCATCGAGCTCTG+TGG | - | chr5_4:28491361-28491380 | None:intergenic | 55.0% | |
| !! | GAGCTCGATGGTGCTGTTAG+CGG | + | chr5_4:28491363-28491382 | Msa0847100:CDS | 55.0% |
| !! | AGCTCGATGGTGCTGTTAGC+GGG | + | chr5_4:28491364-28491383 | Msa0847100:CDS | 55.0% |
| TCTGGAGACGGCATTGTTGC+AGG | + | chr5_4:28491432-28491451 | Msa0847100:CDS | 55.0% | |
| GGCCCATCTCCCTCTGATGA+TGG | + | chr5_4:28489068-28489087 | Msa0847100:CDS | 60.0% | |
| AACACTACCGGCACAACCCC+CGG | - | chr5_4:28489611-28489630 | None:intergenic | 60.0% | |
| !! | CGATGGTGCTGTTAGCGGGA+TGG | + | chr5_4:28491368-28491387 | Msa0847100:CDS | 60.0% |
| !! | TGGTGCTGTTAGCGGGATGG+AGG | + | chr5_4:28491371-28491390 | Msa0847100:CDS | 60.0% |
| AGTACGTGGCTTTCCTCCGC+AGG | + | chr5_4:28492076-28492095 | Msa0847100:CDS | 60.0% | |
| TCCTCCGCAGGAAGATACGG+AGG | + | chr5_4:28492088-28492107 | Msa0847100:CDS | 60.0% | |
| TCCTCCGTATCTTCCTGCGG+AGG | - | chr5_4:28492092-28492111 | None:intergenic | 60.0% | |
| ACACTACCGGCACAACCCCC+GGG | - | chr5_4:28489610-28489629 | None:intergenic | 65.0% | |
| AGGGCTCCCGGGGGTTGTGC+CGG | + | chr5_4:28489601-28489620 | Msa0847100:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 28488330 | 28492400 | 28488330 | ID=Msa0847100;Name=Msa0847100 |
| chr5_4 | mRNA | 28488330 | 28492400 | 28488330 | ID=Msa0847100-mRNA-1;Parent=Msa0847100;Name=Msa0847100-mRNA-1;_AED=0.04;_eAED=0.04;_QI=133|1|1|1|1|1|5|213|583 |
| chr5_4 | exon | 28488330 | 28488503 | 28488330 | ID=Msa0847100-mRNA-1:exon:10744;Parent=Msa0847100-mRNA-1 |
| chr5_4 | exon | 28488779 | 28489125 | 28488779 | ID=Msa0847100-mRNA-1:exon:10745;Parent=Msa0847100-mRNA-1 |
| chr5_4 | exon | 28489221 | 28489885 | 28489221 | ID=Msa0847100-mRNA-1:exon:10746;Parent=Msa0847100-mRNA-1 |
| chr5_4 | exon | 28490982 | 28491453 | 28490982 | ID=Msa0847100-mRNA-1:exon:10747;Parent=Msa0847100-mRNA-1 |
| chr5_4 | exon | 28491961 | 28492400 | 28491961 | ID=Msa0847100-mRNA-1:exon:10748;Parent=Msa0847100-mRNA-1 |
| chr5_4 | five_prime_UTR | 28488330 | 28488462 | 28488330 | ID=Msa0847100-mRNA-1:five_prime_utr;Parent=Msa0847100-mRNA-1 |
| chr5_4 | CDS | 28488463 | 28488503 | 28488463 | ID=Msa0847100-mRNA-1:cds;Parent=Msa0847100-mRNA-1 |
| chr5_4 | CDS | 28488779 | 28489125 | 28488779 | ID=Msa0847100-mRNA-1:cds;Parent=Msa0847100-mRNA-1 |
| chr5_4 | CDS | 28489221 | 28489885 | 28489221 | ID=Msa0847100-mRNA-1:cds;Parent=Msa0847100-mRNA-1 |
| chr5_4 | CDS | 28490982 | 28491453 | 28490982 | ID=Msa0847100-mRNA-1:cds;Parent=Msa0847100-mRNA-1 |
| chr5_4 | CDS | 28491961 | 28492187 | 28491961 | ID=Msa0847100-mRNA-1:cds;Parent=Msa0847100-mRNA-1 |
| chr5_4 | three_prime_UTR | 28492188 | 28492400 | 28492188 | ID=Msa0847100-mRNA-1:three_prime_utr;Parent=Msa0847100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
