Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275560 | sp|Q9CAI2|IQD8_ARATH | 43.908 | 435 | 192 | 13 | 1 | 421 | 1 | 397 | 5.19e-84 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275560 | A0A072TY00 | 95.662 | 438 | 18 | 1 | 1 | 438 | 1 | 437 | 0.0 | 756 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0658640 | Msa1275560 | 0.807549 | 4.787687e-50 | -8.615850e-47 |
| Msa0795870 | Msa1275560 | 0.806779 | 6.969603e-50 | -8.615850e-47 |
| Msa0225860 | Msa1275560 | 0.800930 | 1.143596e-48 | -8.615850e-47 |
| Msa1226520 | Msa1275560 | 0.804417 | 2.182113e-49 | -8.615850e-47 |
| Msa0298470 | Msa1275560 | 0.803068 | 4.158444e-49 | -8.615850e-47 |
| Msa1132840 | Msa1275560 | 0.807914 | 4.004331e-50 | -8.615850e-47 |
| Msa1179480 | Msa1275560 | 0.988402 | 7.037534e-174 | -8.615850e-47 |
| Msa0580370 | Msa1275560 | 0.804380 | 2.221566e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275560 | MtrunA17_Chr8g0342551 | 95.662 | 438 | 18 | 1 | 1 | 438 | 1 | 437 | 0.0 | 756 |
| Msa1275560 | MtrunA17_Chr2g0330051 | 55.278 | 360 | 126 | 10 | 83 | 433 | 70 | 403 | 1.59e-99 | 303 |
| Msa1275560 | MtrunA17_Chr3g0135851 | 42.605 | 453 | 220 | 11 | 1 | 430 | 1 | 436 | 1.31e-78 | 250 |
| Msa1275560 | MtrunA17_Chr4g0025441 | 40.876 | 274 | 141 | 7 | 1 | 263 | 1 | 264 | 2.35e-41 | 152 |
| Msa1275560 | MtrunA17_Chr8g0346021 | 39.267 | 191 | 88 | 5 | 89 | 261 | 125 | 305 | 4.55e-32 | 128 |
| Msa1275560 | MtrunA17_Chr6g0462191 | 36.184 | 304 | 171 | 8 | 89 | 380 | 105 | 397 | 4.47e-30 | 120 |
| Msa1275560 | MtrunA17_Chr1g0200161 | 37.430 | 179 | 106 | 4 | 90 | 265 | 140 | 315 | 9.66e-29 | 117 |
| Msa1275560 | MtrunA17_Chr7g0263731 | 40.110 | 182 | 104 | 3 | 89 | 269 | 106 | 283 | 2.30e-23 | 102 |
| Msa1275560 | MtrunA17_Chr4g0020671 | 42.446 | 139 | 75 | 2 | 90 | 224 | 100 | 237 | 5.54e-23 | 100 |
| Msa1275560 | MtrunA17_Chr2g0316401 | 32.353 | 170 | 111 | 1 | 93 | 262 | 76 | 241 | 1.39e-21 | 94.7 |
| Msa1275560 | MtrunA17_Chr1g0181581 | 34.555 | 191 | 108 | 4 | 68 | 255 | 100 | 276 | 1.46e-21 | 96.7 |
| Msa1275560 | MtrunA17_Chr2g0283321 | 34.118 | 170 | 106 | 2 | 93 | 262 | 65 | 228 | 3.40e-21 | 93.6 |
| Msa1275560 | MtrunA17_Chr1g0204901 | 44.248 | 113 | 50 | 2 | 90 | 189 | 135 | 247 | 5.58e-20 | 92.0 |
| Msa1275560 | MtrunA17_Chr6g0472551 | 66.129 | 62 | 21 | 0 | 93 | 154 | 119 | 180 | 1.64e-18 | 87.4 |
| Msa1275560 | MtrunA17_Chr1g0203711 | 60.606 | 66 | 26 | 0 | 86 | 151 | 110 | 175 | 4.21e-18 | 86.3 |
| Msa1275560 | MtrunA17_Chr8g0340761 | 50.667 | 75 | 37 | 0 | 89 | 163 | 124 | 198 | 8.71e-18 | 85.1 |
| Msa1275560 | MtrunA17_Chr1g0166431 | 45.690 | 116 | 47 | 3 | 90 | 189 | 116 | 231 | 1.05e-17 | 85.1 |
| Msa1275560 | MtrunA17_Chr4g0045641 | 34.483 | 145 | 69 | 2 | 90 | 217 | 145 | 280 | 1.18e-17 | 85.1 |
| Msa1275560 | MtrunA17_Chr8g0389781 | 56.061 | 66 | 29 | 0 | 90 | 155 | 125 | 190 | 4.72e-17 | 83.2 |
| Msa1275560 | MtrunA17_Chr2g0330921 | 45.098 | 102 | 42 | 2 | 89 | 176 | 95 | 196 | 7.17e-17 | 81.6 |
| Msa1275560 | MtrunA17_Chr1g0146931 | 31.000 | 200 | 111 | 5 | 89 | 263 | 120 | 317 | 9.52e-17 | 82.4 |
| Msa1275560 | MtrunA17_Chr8g0371131 | 50.725 | 69 | 34 | 0 | 89 | 157 | 69 | 137 | 1.40e-16 | 76.3 |
| Msa1275560 | MtrunA17_Chr7g0273861 | 34.783 | 138 | 87 | 1 | 90 | 224 | 124 | 261 | 1.41e-16 | 81.3 |
| Msa1275560 | MtrunA17_Chr4g0057321 | 30.601 | 183 | 94 | 4 | 1 | 168 | 1 | 165 | 1.51e-16 | 81.3 |
| Msa1275560 | MtrunA17_Chr4g0060381 | 50.000 | 70 | 35 | 0 | 88 | 157 | 97 | 166 | 3.04e-16 | 80.9 |
| Msa1275560 | MtrunA17_Chr3g0126901 | 70.370 | 54 | 16 | 0 | 89 | 142 | 110 | 163 | 4.26e-16 | 80.1 |
| Msa1275560 | MtrunA17_Chr7g0273951 | 52.239 | 67 | 32 | 0 | 93 | 159 | 108 | 174 | 7.45e-15 | 75.9 |
| Msa1275560 | MtrunA17_Chr1g0172611 | 32.576 | 132 | 82 | 1 | 93 | 217 | 107 | 238 | 2.46e-14 | 74.3 |
| Msa1275560 | MtrunA17_Chr5g0416161 | 41.304 | 92 | 52 | 1 | 66 | 157 | 96 | 185 | 1.57e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1275560 | AT1G72670.1 | 43.908 | 435 | 192 | 13 | 1 | 421 | 1 | 397 | 5.28e-85 | 266 |
| Msa1275560 | AT2G26180.1 | 41.266 | 395 | 184 | 10 | 1 | 375 | 1 | 367 | 3.11e-69 | 226 |
| Msa1275560 | AT1G17480.1 | 40.731 | 383 | 165 | 15 | 1 | 370 | 1 | 334 | 7.08e-60 | 200 |
| Msa1275560 | AT3G22190.3 | 46.535 | 202 | 85 | 5 | 93 | 283 | 90 | 279 | 2.23e-35 | 135 |
| Msa1275560 | AT3G22190.2 | 46.535 | 202 | 85 | 5 | 93 | 283 | 90 | 279 | 2.23e-35 | 135 |
| Msa1275560 | AT3G22190.4 | 46.535 | 202 | 85 | 5 | 93 | 283 | 90 | 279 | 2.23e-35 | 135 |
| Msa1275560 | AT3G22190.1 | 46.535 | 202 | 85 | 5 | 93 | 283 | 90 | 279 | 2.23e-35 | 135 |
| Msa1275560 | AT4G00820.1 | 38.220 | 191 | 98 | 4 | 89 | 265 | 130 | 314 | 4.57e-29 | 119 |
| Msa1275560 | AT3G52290.1 | 37.766 | 188 | 106 | 5 | 74 | 260 | 95 | 272 | 3.13e-27 | 113 |
| Msa1275560 | AT5G03040.1 | 37.306 | 193 | 114 | 4 | 71 | 260 | 93 | 281 | 3.43e-27 | 113 |
| Msa1275560 | AT5G03040.3 | 37.306 | 193 | 114 | 4 | 71 | 260 | 93 | 281 | 3.43e-27 | 113 |
| Msa1275560 | AT5G03040.2 | 37.306 | 193 | 114 | 4 | 71 | 260 | 93 | 281 | 3.43e-27 | 113 |
| Msa1275560 | AT1G01110.2 | 33.838 | 198 | 108 | 3 | 89 | 269 | 119 | 310 | 7.47e-26 | 110 |
| Msa1275560 | AT3G49260.1 | 31.046 | 306 | 167 | 11 | 93 | 382 | 122 | 399 | 9.58e-26 | 109 |
| Msa1275560 | AT3G49260.4 | 31.046 | 306 | 167 | 11 | 93 | 382 | 122 | 399 | 9.58e-26 | 109 |
| Msa1275560 | AT3G49260.2 | 31.046 | 306 | 167 | 11 | 93 | 382 | 122 | 399 | 9.58e-26 | 109 |
| Msa1275560 | AT3G49260.3 | 31.046 | 306 | 168 | 10 | 93 | 382 | 122 | 400 | 1.95e-25 | 108 |
| Msa1275560 | AT3G09710.1 | 35.260 | 173 | 107 | 3 | 89 | 260 | 106 | 274 | 1.25e-22 | 100 |
| Msa1275560 | AT3G09710.2 | 33.333 | 186 | 107 | 4 | 89 | 260 | 106 | 288 | 4.35e-21 | 95.9 |
| Msa1275560 | AT4G10640.1 | 31.481 | 216 | 107 | 5 | 88 | 274 | 97 | 300 | 5.79e-20 | 92.0 |
| Msa1275560 | AT2G26410.2 | 31.667 | 180 | 116 | 4 | 89 | 265 | 146 | 321 | 7.30e-20 | 92.4 |
| Msa1275560 | AT2G26410.1 | 31.667 | 180 | 116 | 4 | 89 | 265 | 146 | 321 | 7.30e-20 | 92.4 |
| Msa1275560 | AT2G33990.1 | 31.606 | 193 | 122 | 3 | 90 | 282 | 46 | 228 | 4.72e-19 | 87.0 |
| Msa1275560 | AT4G14750.1 | 32.222 | 180 | 86 | 4 | 1 | 155 | 1 | 169 | 1.44e-18 | 87.4 |
| Msa1275560 | AT4G14750.2 | 32.222 | 180 | 86 | 4 | 1 | 155 | 60 | 228 | 1.67e-18 | 87.8 |
| Msa1275560 | AT4G14750.3 | 32.222 | 180 | 86 | 4 | 1 | 155 | 60 | 228 | 1.74e-18 | 87.8 |
| Msa1275560 | AT3G59690.2 | 36.765 | 136 | 72 | 3 | 86 | 217 | 165 | 290 | 3.67e-18 | 87.0 |
| Msa1275560 | AT3G59690.1 | 36.765 | 136 | 72 | 3 | 86 | 217 | 165 | 290 | 3.67e-18 | 87.0 |
| Msa1275560 | AT3G15050.1 | 29.231 | 195 | 117 | 5 | 91 | 278 | 50 | 230 | 1.23e-17 | 82.8 |
| Msa1275560 | AT1G51960.1 | 49.367 | 79 | 39 | 1 | 84 | 161 | 92 | 170 | 1.89e-17 | 84.0 |
| Msa1275560 | AT4G23060.1 | 59.420 | 69 | 28 | 0 | 91 | 159 | 167 | 235 | 2.40e-17 | 84.7 |
| Msa1275560 | AT3G16490.1 | 55.385 | 65 | 29 | 0 | 90 | 154 | 106 | 170 | 4.91e-17 | 82.8 |
| Msa1275560 | AT5G07240.1 | 65.079 | 63 | 21 | 1 | 90 | 151 | 104 | 166 | 5.27e-17 | 82.8 |
| Msa1275560 | AT5G07240.2 | 65.079 | 63 | 21 | 1 | 90 | 151 | 150 | 212 | 6.17e-17 | 83.2 |
| Msa1275560 | AT5G13460.1 | 36.567 | 134 | 79 | 3 | 85 | 214 | 104 | 235 | 7.33e-17 | 82.8 |
| Msa1275560 | AT3G51380.1 | 53.030 | 66 | 31 | 0 | 89 | 154 | 35 | 100 | 2.84e-16 | 74.7 |
| Msa1275560 | AT2G43680.4 | 36.842 | 133 | 70 | 3 | 90 | 217 | 321 | 444 | 2.87e-16 | 81.6 |
| Msa1275560 | AT2G43680.2 | 36.842 | 133 | 70 | 3 | 90 | 217 | 321 | 444 | 2.87e-16 | 81.6 |
| Msa1275560 | AT2G43680.3 | 36.842 | 133 | 70 | 3 | 90 | 217 | 321 | 444 | 2.87e-16 | 81.6 |
| Msa1275560 | AT2G43680.5 | 36.842 | 133 | 70 | 3 | 90 | 217 | 321 | 444 | 2.87e-16 | 81.6 |
| Msa1275560 | AT2G43680.1 | 36.842 | 133 | 70 | 3 | 90 | 217 | 322 | 445 | 3.23e-16 | 81.6 |
| Msa1275560 | AT1G18840.1 | 45.714 | 70 | 38 | 0 | 88 | 157 | 106 | 175 | 3.44e-16 | 81.3 |
| Msa1275560 | AT1G18840.3 | 45.714 | 70 | 38 | 0 | 88 | 157 | 106 | 175 | 3.44e-16 | 81.3 |
| Msa1275560 | AT1G18840.2 | 45.714 | 70 | 38 | 0 | 88 | 157 | 106 | 175 | 3.44e-16 | 81.3 |
| Msa1275560 | AT4G29150.1 | 42.727 | 110 | 55 | 2 | 89 | 190 | 129 | 238 | 3.57e-16 | 80.5 |
| Msa1275560 | AT5G03960.3 | 41.353 | 133 | 65 | 3 | 93 | 217 | 110 | 237 | 5.06e-16 | 80.1 |
| Msa1275560 | AT5G03960.2 | 41.353 | 133 | 65 | 3 | 93 | 217 | 110 | 237 | 5.06e-16 | 80.1 |
| Msa1275560 | AT5G03960.1 | 41.353 | 133 | 65 | 3 | 93 | 217 | 109 | 236 | 5.61e-16 | 79.7 |
| Msa1275560 | AT5G62070.1 | 69.811 | 53 | 16 | 0 | 93 | 145 | 119 | 171 | 2.28e-15 | 78.2 |
| Msa1275560 | AT1G74690.1 | 47.143 | 70 | 37 | 0 | 88 | 157 | 110 | 179 | 5.28e-14 | 74.3 |
| Msa1275560 | AT1G14380.1 | 40.541 | 74 | 44 | 0 | 84 | 157 | 87 | 160 | 5.88e-13 | 71.2 |
| Msa1275560 | AT1G14380.3 | 40.541 | 74 | 44 | 0 | 84 | 157 | 87 | 160 | 5.88e-13 | 71.2 |
| Msa1275560 | AT1G14380.4 | 40.541 | 74 | 44 | 0 | 84 | 157 | 87 | 160 | 5.88e-13 | 71.2 |
| Msa1275560 | AT1G14380.6 | 40.541 | 74 | 44 | 0 | 84 | 157 | 87 | 160 | 6.17e-13 | 71.2 |
| Msa1275560 | AT1G14380.5 | 40.541 | 74 | 44 | 0 | 84 | 157 | 87 | 160 | 6.17e-13 | 71.2 |
| Msa1275560 | AT1G14380.2 | 40.541 | 74 | 44 | 0 | 84 | 157 | 87 | 160 | 6.17e-13 | 71.2 |
| Msa1275560 | AT1G14380.7 | 40.541 | 74 | 44 | 0 | 84 | 157 | 87 | 160 | 7.49e-13 | 70.9 |
| Msa1275560 | AT3G49380.1 | 52.459 | 61 | 29 | 0 | 86 | 146 | 105 | 165 | 2.87e-12 | 68.2 |
| Msa1275560 | AT1G19870.1 | 49.153 | 59 | 30 | 0 | 95 | 153 | 219 | 277 | 7.90e-12 | 67.8 |
| Msa1275560 | AT1G19870.2 | 49.153 | 59 | 30 | 0 | 95 | 153 | 36 | 94 | 8.30e-12 | 67.8 |
Find 107 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTGAAGAGACTCTTTA+TGG | 0.133585 | 8_3:+9580090 | Msa1275560:CDS |
| ATCTTTATGCAACTCCTTTA+AGG | 0.134915 | 8_3:+9580209 | Msa1275560:CDS |
| GATACCTCAGCTTGTTTAAT+AGG | 0.169093 | 8_3:-9578948 | None:intergenic |
| GCAGATACTAGAAGCATTTC+TGG | 0.170763 | 8_3:+9580157 | Msa1275560:CDS |
| TGGCTACTCTATTCATTAAT+AGG | 0.208810 | 8_3:+9580632 | Msa1275560:three_prime_UTR |
| TGTAGGCAAGAAGAGCTTTA+AGG | 0.213336 | 8_3:+9578733 | Msa1275560:intron |
| CATAAAGAGTCTCTTCAAAT+TGG | 0.218799 | 8_3:-9580089 | None:intergenic |
| TCATCAGAAGTTATTGGATT+TGG | 0.241573 | 8_3:+9578185 | Msa1275560:CDS |
| GTAATAGATACAAACAATTT+AGG | 0.241825 | 8_3:-9580374 | None:intergenic |
| GTAAGAGAAAATGGAAATTA+TGG | 0.244600 | 8_3:+9578156 | Msa1275560:CDS |
| AACTCCACACAAAGATTTCT+TGG | 0.248107 | 8_3:+9578313 | Msa1275560:CDS |
| CCTATTCTTCGGCTAATATA+TGG | 0.248919 | 8_3:+9580182 | Msa1275560:CDS |
| TATGTTGATGTTCATTCTTT+TGG | 0.255920 | 8_3:+9580612 | Msa1275560:three_prime_UTR |
| CTCAATTACCAGGGTGGAAT+TGG | 0.278982 | 8_3:-9579170 | None:intergenic |
| TTGATAAGAGTAAGAGAAAA+TGG | 0.285732 | 8_3:+9578147 | Msa1275560:CDS |
| AGAAATTCATCAGAAGTTAT+TGG | 0.289830 | 8_3:+9578179 | Msa1275560:CDS |
| CGAACTTGATTATTCGTAGA+TGG | 0.297558 | 8_3:-9577745 | None:intergenic |
| GCCATGGGAGAGCAGGTTAA+TGG | 0.304447 | 8_3:+9579721 | Msa1275560:CDS |
| GTTAATGGGAGACATCTATT+TGG | 0.309471 | 8_3:+9579736 | Msa1275560:CDS |
| TTCAACATTCTCATTCTTCC+TGG | 0.326983 | 8_3:-9579783 | None:intergenic |
| AGGGACTAGTAGTTATAAAT+TGG | 0.334587 | 8_3:-9580571 | None:intergenic |
| TTAACTTCTTCCACAGTTCC+TGG | 0.339398 | 8_3:-9579088 | None:intergenic |
| CATTTCTGGTTCCTATTCTT+CGG | 0.345550 | 8_3:+9580171 | Msa1275560:CDS |
| GATGCAAAGAAAAGGGAAAC+TGG | 0.374499 | 8_3:+9579998 | Msa1275560:CDS |
| AACAAGCAGCTGTTACTCTA+AGG | 0.378838 | 8_3:+9578811 | Msa1275560:CDS |
| GTAGGCAAGAAGAGCTTTAA+GGG | 0.390517 | 8_3:+9578734 | Msa1275560:intron |
| AAGAGCTTTAAGGGCTTTGA+GGG | 0.409104 | 8_3:+9578743 | Msa1275560:CDS |
| GAAGAGCTTTAAGGGCTTTG+AGG | 0.415886 | 8_3:+9578742 | Msa1275560:CDS |
| ATGAAGAAGGGGCACAGCTT+TGG | 0.427108 | 8_3:+9578215 | Msa1275560:CDS |
| GATGTGGATGAAATTGATAA+AGG | 0.428311 | 8_3:-9579953 | None:intergenic |
| ATCATTTGCAAACTTGTTGA+GGG | 0.431651 | 8_3:+9580490 | Msa1275560:three_prime_UTR |
| ACACGCTTTCAGCTTAGCTT+TGG | 0.433439 | 8_3:-9580053 | None:intergenic |
| AGATTTCTTGGTGATCAAAC+AGG | 0.433822 | 8_3:+9578325 | Msa1275560:CDS |
| ATAAAGAGTCTCTTCAAATT+GGG | 0.441369 | 8_3:-9580088 | None:intergenic |
| CAACAAGATGTTGGACTCAT+TGG | 0.441746 | 8_3:-9580280 | None:intergenic |
| CCATGGGAGAGCAGGTTAAT+GGG | 0.442333 | 8_3:+9579722 | Msa1275560:CDS |
| CATCATTTGCAAACTTGTTG+AGG | 0.443452 | 8_3:+9580489 | Msa1275560:three_prime_UTR |
| CCATATATTAGCCGAAGAAT+AGG | 0.446522 | 8_3:-9580182 | None:intergenic |
| CTGAAGACGACGGAGTTGAT+TGG | 0.447876 | 8_3:-9579898 | None:intergenic |
| GGCTTAGAACCTCTTGAGCT+TGG | 0.458398 | 8_3:-9579632 | None:intergenic |
| AAATGGGTGGTTCAGGAAGT+TGG | 0.460216 | 8_3:+9577701 | Msa1275560:exon |
| ATTTGGAACTTCTATGAAGA+AGG | 0.464371 | 8_3:+9578202 | Msa1275560:CDS |
| GCCTCAAGGCAAAGAATGTC+CGG | 0.467814 | 8_3:+9578865 | Msa1275560:CDS |
| TTTGCATCTTCCACCCTGGT+TGG | 0.472014 | 8_3:-9579983 | None:intergenic |
| TATCAAAATCGATTTACAAT+GGG | 0.473427 | 8_3:+9580238 | Msa1275560:CDS |
| TGCTGCTGCAATGGCTGCTG+TGG | 0.474008 | 8_3:+9578286 | Msa1275560:CDS |
| TTTAAGGGCTTTGAGGGCAT+TGG | 0.477642 | 8_3:+9578749 | Msa1275560:CDS |
| GGGTGGAAGATGCAAAGAAA+AGG | 0.482272 | 8_3:+9579990 | Msa1275560:CDS |
| ATGTGGATGAAATTGATAAA+GGG | 0.482929 | 8_3:-9579952 | None:intergenic |
| CCCATTAACCTGCTCTCCCA+TGG | 0.488427 | 8_3:-9579722 | None:intergenic |
| CAAGGGTGGTGTGACTTACC+AGG | 0.491604 | 8_3:+9579070 | Msa1275560:CDS |
| CAGCTAAGCCATGGGAGAGC+AGG | 0.493641 | 8_3:+9579714 | Msa1275560:CDS |
| CTCGAAAAGCAGACTGGATG+CGG | 0.495137 | 8_3:-9578361 | None:intergenic |
| TCCAGAAAAGAAAGCTAAGA+AGG | 0.502122 | 8_3:+9578893 | Msa1275560:CDS |
| TGCAAGCAATATTTCGCGGC+CGG | 0.508698 | 8_3:+9578778 | Msa1275560:CDS |
| TAGCAAACGTTGAATTTGTA+CGG | 0.511056 | 8_3:+9580538 | Msa1275560:three_prime_UTR |
| TGTTGATTGAGAGGAGTCAA+TGG | 0.511060 | 8_3:-9579653 | None:intergenic |
| CTCAATCAACACAGCTTAGA+CGG | 0.511931 | 8_3:+9579665 | Msa1275560:CDS |
| TTTCTTTGCATCTTCCACCC+TGG | 0.515439 | 8_3:-9579987 | None:intergenic |
| AGAAGCCTCGAAAAGCAGAC+TGG | 0.516329 | 8_3:-9578367 | None:intergenic |
| CTGGACGATGGAGTCATGCC+AGG | 0.522345 | 8_3:-9579764 | None:intergenic |
| TTGAGGGTCTGAGGTTAAGC+GGG | 0.530931 | 8_3:+9580506 | Msa1275560:three_prime_UTR |
| TTCTCATTCTTCCTGGACGA+TGG | 0.534473 | 8_3:-9579776 | None:intergenic |
| GGGCTTTGAGGGCATTGGTG+AGG | 0.534691 | 8_3:+9578754 | Msa1275560:CDS |
| GTTAGATTCAAGTTCAACGT+TGG | 0.541857 | 8_3:+9580443 | Msa1275560:three_prime_UTR |
| GACAATGGACAACAAGATGT+TGG | 0.543413 | 8_3:-9580289 | None:intergenic |
| TTTGGAACTTCTATGAAGAA+GGG | 0.543844 | 8_3:+9578203 | Msa1275560:CDS |
| TGTTACTCTAAGGTGCATGC+AGG | 0.547486 | 8_3:+9578821 | Msa1275560:CDS |
| GTGTTGTTGATATAAGTTGA+AGG | 0.552236 | 8_3:-9579810 | None:intergenic |
| GCTGGATTGCAGCTAAGCCA+TGG | 0.553274 | 8_3:+9579705 | Msa1275560:CDS |
| GCAAACTTGTTGAGGGTCTG+AGG | 0.557721 | 8_3:+9580497 | Msa1275560:three_prime_UTR |
| GGTGGAAGATGCAAAGAAAA+GGG | 0.560328 | 8_3:+9579991 | Msa1275560:CDS |
| TCCGGACATTCTTTGCCTTG+AGG | 0.562579 | 8_3:-9578866 | None:intergenic |
| CTGGCATGACTCCATCGTCC+AGG | 0.565898 | 8_3:+9579765 | Msa1275560:CDS |
| TTATCAAAATCGATTTACAA+TGG | 0.568908 | 8_3:+9580237 | Msa1275560:CDS |
| TCTTGGTGATCAAACAGGAA+TGG | 0.570155 | 8_3:+9578330 | Msa1275560:CDS |
| TTTGTTATTGTCAGCAAGGG+TGG | 0.574781 | 8_3:+9579056 | Msa1275560:intron |
| AGTATGTGTTATGAGTTTGA+AGG | 0.577937 | 8_3:-9577621 | None:intergenic |
| ATGCAAAGAAAAGGGAAACT+GGG | 0.578064 | 8_3:+9579999 | Msa1275560:CDS |
| CCACATCTGAATCACCAACC+AGG | 0.582285 | 8_3:+9579969 | Msa1275560:CDS |
| CTGGATTGCAGCTAAGCCAT+GGG | 0.595347 | 8_3:+9579706 | Msa1275560:CDS |
| AGGCTGCAAGCAATATTTCG+CGG | 0.595467 | 8_3:+9578774 | Msa1275560:CDS |
| GATGTTGGACTCATTGGTCA+TGG | 0.597672 | 8_3:-9580274 | None:intergenic |
| ATCACCAAGAAATCTTTGTG+TGG | 0.601524 | 8_3:-9578317 | None:intergenic |
| TCTTCTGACTAAAGTGACAA+TGG | 0.604160 | 8_3:-9580304 | None:intergenic |
| AGTTCTAGTCCAAGCTCAAG+AGG | 0.604619 | 8_3:+9579623 | Msa1275560:CDS |
| GTTGAGGGTCTGAGGTTAAG+CGG | 0.606315 | 8_3:+9580505 | Msa1275560:three_prime_UTR |
| TCTAAGCTGTGTTGATTGAG+AGG | 0.608188 | 8_3:-9579662 | None:intergenic |
| TTGGAACTTCTATGAAGAAG+GGG | 0.609508 | 8_3:+9578204 | Msa1275560:CDS |
| TGATCCTATTAAACAAGCTG+AGG | 0.609591 | 8_3:+9578944 | Msa1275560:CDS |
| GCTGTCAAATTAGTGTAGGT+CGG | 0.609596 | 8_3:-9580025 | None:intergenic |
| AAAAGCAGACTGGATGCGGA+TGG | 0.611702 | 8_3:-9578357 | None:intergenic |
| TTCTTCGGCTAATATATGGA+AGG | 0.613165 | 8_3:+9580186 | Msa1275560:CDS |
| TGCAGTGCTGCAGAGTGCAA+AGG | 0.613227 | 8_3:-9580397 | None:intergenic |
| TGACGCTGTCAAATTAGTGT+AGG | 0.615797 | 8_3:-9580029 | None:intergenic |
| GACATCTATTTGGACTCACC+TGG | 0.618384 | 8_3:+9579746 | Msa1275560:CDS |
| GTAAGAGCATGTTAGAACGC+TGG | 0.621069 | 8_3:+9579687 | Msa1275560:CDS |
| CCTGGTTGGTGATTCAGATG+TGG | 0.623733 | 8_3:-9579969 | None:intergenic |
| GCAGTGCTGCAGAGTGCAAA+GGG | 0.625203 | 8_3:-9580396 | None:intergenic |
| GCGAGTTCAAGAACGCCTCA+AGG | 0.630291 | 8_3:+9578851 | Msa1275560:CDS |
| CACATCTGAATCACCAACCA+GGG | 0.647100 | 8_3:+9579970 | Msa1275560:CDS |
| GTCATACACCAATTCCACCC+TGG | 0.671736 | 8_3:+9579162 | Msa1275560:CDS |
| GAGCTTATAGCTGAAGACGA+CGG | 0.681122 | 8_3:-9579908 | None:intergenic |
| ATCTGAATCACCAACCAGGG+TGG | 0.681122 | 8_3:+9579973 | Msa1275560:CDS |
| TCTTAACTCAATTACCAGGG+TGG | 0.682160 | 8_3:-9579176 | None:intergenic |
| GTGTGACTTACCAGGAACTG+TGG | 0.695767 | 8_3:+9579078 | Msa1275560:CDS |
| TTCAACTTATATCAACAACA+CGG | 0.715490 | 8_3:+9579812 | Msa1275560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTAATCATTTTTTAC+TGG | - | chr8_3:9577951-9577970 | None:intergenic | 10.0% |
| !!! | AATTATTTCATTTTGTTATT+AGG | + | chr8_3:9578442-9578461 | Msa1275560:intron | 10.0% |
| !!! | TACTGGTTTTAAATTATTAT+CGG | - | chr8_3:9577934-9577953 | None:intergenic | 15.0% |
| !! | AATATAATTACATGTGTATA+CGG | + | chr8_3:9577965-9577984 | Msa1275560:intron | 15.0% |
| !! | ATTATACATTTAAGTATCTA+AGG | - | chr8_3:9578645-9578664 | None:intergenic | 15.0% |
| !!! | GAAGTTAGAATTTTAAAATT+TGG | + | chr8_3:9579357-9579376 | Msa1275560:intron | 15.0% |
| !! | AATGTAAAGTAATTTATGTT+TGG | - | chr8_3:9579442-9579461 | None:intergenic | 15.0% |
| !!! | TTATTAAAGCACATATATTT+TGG | - | chr8_3:9579574-9579593 | None:intergenic | 15.0% |
| !! | AACATACTAAAAAAATACAA+TGG | - | chr8_3:9580598-9580617 | None:intergenic | 15.0% |
| !!! | GATGTGTATTTATTATGTTT+TGG | + | chr8_3:9578097-9578116 | Msa1275560:intron | 20.0% |
| !!! | AATTAATGATTTGTTTCTTG+AGG | - | chr8_3:9578619-9578638 | None:intergenic | 20.0% |
| !! | CAAGAAACAAATCATTAATT+AGG | + | chr8_3:9578619-9578638 | Msa1275560:intron | 20.0% |
| !! | GATACTTAAATGTATAATTC+AGG | + | chr8_3:9578647-9578666 | Msa1275560:intron | 20.0% |
| !! | TTAAAGCAAAACTAAAAATG+AGG | + | chr8_3:9579107-9579126 | Msa1275560:CDS | 20.0% |
| !! | TTAGTAAAAGCAAGAAAAAA+TGG | + | chr8_3:9579836-9579855 | Msa1275560:CDS | 20.0% |
| !!! | TTATCAAAATCGATTTACAA+TGG | + | chr8_3:9580237-9580256 | Msa1275560:CDS | 20.0% |
| !!! | TATCAAAATCGATTTACAAT+GGG | + | chr8_3:9580238-9580257 | Msa1275560:CDS | 20.0% |
| !! | GTAATAGATACAAACAATTT+AGG | - | chr8_3:9580377-9580396 | None:intergenic | 20.0% |
| !! | ACTAAAAAAATACAATGGAA+GGG | - | chr8_3:9580593-9580612 | None:intergenic | 20.0% |
| !! | TACTAAAAAAATACAATGGA+AGG | - | chr8_3:9580594-9580613 | None:intergenic | 20.0% |
| !!! | AAGAGCTTATTTTAGAAGAA+TGG | - | chr8_3:9577676-9577695 | None:intergenic | 25.0% |
| !! | AAATAAGCTCTTTTCTCAAA+TGG | + | chr8_3:9577684-9577703 | Msa1275560:exon | 25.0% |
| !! | AATAAGCTCTTTTCTCAAAT+GGG | + | chr8_3:9577685-9577704 | Msa1275560:exon | 25.0% |
| ! | AAAGACATATTTGGTATGTT+CGG | - | chr8_3:9578033-9578052 | None:intergenic | 25.0% |
| !! | ATGTTACATAGGTGTATTTT+TGG | + | chr8_3:9578067-9578086 | Msa1275560:intron | 25.0% |
| ! | TTGATAAGAGTAAGAGAAAA+TGG | + | chr8_3:9578147-9578166 | Msa1275560:CDS | 25.0% |
| ! | GTAAGAGAAAATGGAAATTA+TGG | + | chr8_3:9578156-9578175 | Msa1275560:CDS | 25.0% |
| ! | AGAAATTCATCAGAAGTTAT+TGG | + | chr8_3:9578179-9578198 | Msa1275560:CDS | 25.0% |
| !! | CTTTAACTTTAGTACATGTT+TGG | + | chr8_3:9578475-9578494 | Msa1275560:intron | 25.0% |
| !! | AAGTTCATACTTTGATTTAG+AGG | - | chr8_3:9578679-9578698 | None:intergenic | 25.0% |
| ! | AAATCTTAACTCAATTACCA+GGG | - | chr8_3:9579182-9579201 | None:intergenic | 25.0% |
| ! | TTACTGTGTAAATATGGTTT+CGG | + | chr8_3:9579231-9579250 | Msa1275560:intron | 25.0% |
| !!! | TTTGATTGTTTTGAATGAAC+TGG | - | chr8_3:9579498-9579517 | None:intergenic | 25.0% |
| ! | TTCAACTTATATCAACAACA+CGG | + | chr8_3:9579812-9579831 | Msa1275560:CDS | 25.0% |
| ! | AAAAAATGGTGTAACAACTA+GGG | + | chr8_3:9579850-9579869 | Msa1275560:CDS | 25.0% |
| ! | ATGTGGATGAAATTGATAAA+GGG | - | chr8_3:9579955-9579974 | None:intergenic | 25.0% |
| ! | ATAAAGAGTCTCTTCAAATT+GGG | - | chr8_3:9580091-9580110 | None:intergenic | 25.0% |
| !!! | TTTTGATAACTTGTCCTTAA+AGG | - | chr8_3:9580226-9580245 | None:intergenic | 25.0% |
| !! | TATGTTGATGTTCATTCTTT+TGG | + | chr8_3:9580612-9580631 | Msa1275560:three_prime_UTR | 25.0% |
| AGTATGTGTTATGAGTTTGA+AGG | - | chr8_3:9577624-9577643 | None:intergenic | 30.0% | |
| CTTCAGATCAAAGACATATT+TGG | - | chr8_3:9578042-9578061 | None:intergenic | 30.0% | |
| !!! | CATAGGTGTATTTTTGGTTT+TGG | + | chr8_3:9578073-9578092 | Msa1275560:intron | 30.0% |
| TCATCAGAAGTTATTGGATT+TGG | + | chr8_3:9578185-9578204 | Msa1275560:CDS | 30.0% | |
| ! | ATTTGGAACTTCTATGAAGA+AGG | + | chr8_3:9578202-9578221 | Msa1275560:CDS | 30.0% |
| ! | TTTGGAACTTCTATGAAGAA+GGG | + | chr8_3:9578203-9578222 | Msa1275560:CDS | 30.0% |
| CAGAATCATGATTATGCAAA+AGG | - | chr8_3:9578406-9578425 | None:intergenic | 30.0% | |
| TTAGTACATGTTTGGATTTG+AGG | + | chr8_3:9578483-9578502 | Msa1275560:intron | 30.0% | |
| !!! | GCTTTTGCTATTTATGTTGT+AGG | + | chr8_3:9578716-9578735 | Msa1275560:intron | 30.0% |
| AAACTAAAAATGAGGCAAGA+AGG | + | chr8_3:9579115-9579134 | Msa1275560:CDS | 30.0% | |
| CAAATCTTAACTCAATTACC+AGG | - | chr8_3:9579183-9579202 | None:intergenic | 30.0% | |
| TGAGTCTTACTGTGTAAATA+TGG | + | chr8_3:9579225-9579244 | Msa1275560:intron | 30.0% | |
| ! | TGTAAATATGGTTTCGGTTT+TGG | + | chr8_3:9579237-9579256 | Msa1275560:intron | 30.0% |
| !! | CAAGTTAGAATCACTTTTAG+AGG | - | chr8_3:9579338-9579357 | None:intergenic | 30.0% |
| ! | GTGTTGTTGATATAAGTTGA+AGG | - | chr8_3:9579813-9579832 | None:intergenic | 30.0% |
| GAAAAAATGGTGTAACAACT+AGG | + | chr8_3:9579849-9579868 | Msa1275560:CDS | 30.0% | |
| GATGTGGATGAAATTGATAA+AGG | - | chr8_3:9579956-9579975 | None:intergenic | 30.0% | |
| CATAAAGAGTCTCTTCAAAT+TGG | - | chr8_3:9580092-9580111 | None:intergenic | 30.0% | |
| CAATTTGAAGAGACTCTTTA+TGG | + | chr8_3:9580090-9580109 | Msa1275560:CDS | 30.0% | |
| ATCTTTATGCAACTCCTTTA+AGG | + | chr8_3:9580209-9580228 | Msa1275560:CDS | 30.0% | |
| !! | ATCATTTGCAAACTTGTTGA+GGG | + | chr8_3:9580490-9580509 | Msa1275560:three_prime_UTR | 30.0% |
| TAGCAAACGTTGAATTTGTA+CGG | + | chr8_3:9580538-9580557 | Msa1275560:three_prime_UTR | 30.0% | |
| ! | AGGGACTAGTAGTTATAAAT+TGG | - | chr8_3:9580574-9580593 | None:intergenic | 30.0% |
| TGGCTACTCTATTCATTAAT+AGG | + | chr8_3:9580632-9580651 | Msa1275560:three_prime_UTR | 30.0% | |
| CGAACTTGATTATTCGTAGA+TGG | - | chr8_3:9577748-9577767 | None:intergenic | 35.0% | |
| !! | GCGGTTTTATATATGAAGCA+TGG | + | chr8_3:9577894-9577913 | Msa1275560:intron | 35.0% |
| CTGAAGCAACAATGTTACAT+AGG | + | chr8_3:9578056-9578075 | Msa1275560:intron | 35.0% | |
| !!! | TTTGGTCCTGAACTTTTTTC+AGG | + | chr8_3:9578115-9578134 | Msa1275560:intron | 35.0% |
| !!! | CTGAACTTTTTTCAGGAGAA+GGG | + | chr8_3:9578122-9578141 | Msa1275560:intron | 35.0% |
| TTGGAACTTCTATGAAGAAG+GGG | + | chr8_3:9578204-9578223 | Msa1275560:CDS | 35.0% | |
| AACTCCACACAAAGATTTCT+TGG | + | chr8_3:9578313-9578332 | Msa1275560:CDS | 35.0% | |
| ATCACCAAGAAATCTTTGTG+TGG | - | chr8_3:9578320-9578339 | None:intergenic | 35.0% | |
| ! | AGATTTCTTGGTGATCAAAC+AGG | + | chr8_3:9578325-9578344 | Msa1275560:CDS | 35.0% |
| ! | TTTGGATTTGAGGTGAGTTT+GGG | + | chr8_3:9578493-9578512 | Msa1275560:intron | 35.0% |
| !! | CTTTCTTTTCTGGAGAATTC+CGG | - | chr8_3:9578887-9578906 | None:intergenic | 35.0% |
| TCCAGAAAAGAAAGCTAAGA+AGG | + | chr8_3:9578893-9578912 | Msa1275560:CDS | 35.0% | |
| !! | TCCTTCTTAGCTTTCTTTTC+TGG | - | chr8_3:9578897-9578916 | None:intergenic | 35.0% |
| TGATCCTATTAAACAAGCTG+AGG | + | chr8_3:9578944-9578963 | Msa1275560:CDS | 35.0% | |
| ! | GATACCTCAGCTTGTTTAAT+AGG | - | chr8_3:9578951-9578970 | None:intergenic | 35.0% |
| !! | TTGCTTTGTTATTGTCAGCA+AGG | + | chr8_3:9579052-9579071 | Msa1275560:intron | 35.0% |
| !! | TGCTTTGTTATTGTCAGCAA+GGG | + | chr8_3:9579053-9579072 | Msa1275560:intron | 35.0% |
| !! | AAATATGGTTTCGGTTTTGG+AGG | + | chr8_3:9579240-9579259 | Msa1275560:intron | 35.0% |
| !! | GGAGGCACAATTAATTTTAG+AGG | + | chr8_3:9579261-9579280 | Msa1275560:intron | 35.0% |
| ! | CAATCAAATTTTGCCACTAC+TGG | + | chr8_3:9579510-9579529 | Msa1275560:intron | 35.0% |
| GTTAATGGGAGACATCTATT+TGG | + | chr8_3:9579736-9579755 | Msa1275560:CDS | 35.0% | |
| TTCAACATTCTCATTCTTCC+TGG | - | chr8_3:9579786-9579805 | None:intergenic | 35.0% | |
| ATGCAAAGAAAAGGGAAACT+GGG | + | chr8_3:9579999-9580018 | Msa1275560:CDS | 35.0% | |
| !! | CATTTCTGGTTCCTATTCTT+CGG | + | chr8_3:9580171-9580190 | Msa1275560:CDS | 35.0% |
| CCATATATTAGCCGAAGAAT+AGG | - | chr8_3:9580185-9580204 | None:intergenic | 35.0% | |
| CCTATTCTTCGGCTAATATA+TGG | + | chr8_3:9580182-9580201 | Msa1275560:CDS | 35.0% | |
| TTCTTCGGCTAATATATGGA+AGG | + | chr8_3:9580186-9580205 | Msa1275560:CDS | 35.0% | |
| TCTTCTGACTAAAGTGACAA+TGG | - | chr8_3:9580307-9580326 | None:intergenic | 35.0% | |
| ! | GTTAGATTCAAGTTCAACGT+TGG | + | chr8_3:9580443-9580462 | Msa1275560:three_prime_UTR | 35.0% |
| !! | CATCATTTGCAAACTTGTTG+AGG | + | chr8_3:9580489-9580508 | Msa1275560:three_prime_UTR | 35.0% |
| ! | AAGCTCTTTTCTCAAATGGG+TGG | + | chr8_3:9577688-9577707 | Msa1275560:exon | 40.0% |
| ! | TTTTCTCAAATGGGTGGTTC+AGG | + | chr8_3:9577694-9577713 | Msa1275560:exon | 40.0% |
| GATGTGTAATTGTCGTGTGT+CGG | - | chr8_3:9577816-9577835 | None:intergenic | 40.0% | |
| ! | AATTATTATCGGTGTCCACG+TGG | - | chr8_3:9577923-9577942 | None:intergenic | 40.0% |
| CCTTCTCCTGAAAAAAGTTC+AGG | - | chr8_3:9578124-9578143 | None:intergenic | 40.0% | |
| !!! | CCTGAACTTTTTTCAGGAGA+AGG | + | chr8_3:9578121-9578140 | Msa1275560:intron | 40.0% |
| ! | TCTTGGTGATCAAACAGGAA+TGG | + | chr8_3:9578330-9578349 | Msa1275560:CDS | 40.0% |
| ! | GTTTGGATTTGAGGTGAGTT+TGG | + | chr8_3:9578492-9578511 | Msa1275560:intron | 40.0% |
| TGTAGGCAAGAAGAGCTTTA+AGG | + | chr8_3:9578733-9578752 | Msa1275560:intron | 40.0% | |
| ! | GTAGGCAAGAAGAGCTTTAA+GGG | + | chr8_3:9578734-9578753 | Msa1275560:intron | 40.0% |
| !! | AAGAGCTTTAAGGGCTTTGA+GGG | + | chr8_3:9578743-9578762 | Msa1275560:CDS | 40.0% |
| !! | CTGCTTGTTTTCTCACTAAC+CGG | - | chr8_3:9578800-9578819 | None:intergenic | 40.0% |
| AACAAGCAGCTGTTACTCTA+AGG | + | chr8_3:9578811-9578830 | Msa1275560:CDS | 40.0% | |
| !! | TTTGTTATTGTCAGCAAGGG+TGG | + | chr8_3:9579056-9579075 | Msa1275560:intron | 40.0% |
| TTAACTTCTTCCACAGTTCC+TGG | - | chr8_3:9579091-9579110 | None:intergenic | 40.0% | |
| TCTTAACTCAATTACCAGGG+TGG | - | chr8_3:9579179-9579198 | None:intergenic | 40.0% | |
| TGGTCTCTACAACAGATTGT+TGG | + | chr8_3:9579377-9579396 | Msa1275560:intron | 40.0% | |
| ! | TGTTGATTGAGAGGAGTCAA+TGG | - | chr8_3:9579656-9579675 | None:intergenic | 40.0% |
| !! | TCTAAGCTGTGTTGATTGAG+AGG | - | chr8_3:9579665-9579684 | None:intergenic | 40.0% |
| CTCAATCAACACAGCTTAGA+CGG | + | chr8_3:9579665-9579684 | Msa1275560:CDS | 40.0% | |
| GGTGGAAGATGCAAAGAAAA+GGG | + | chr8_3:9579991-9580010 | Msa1275560:CDS | 40.0% | |
| GATGCAAAGAAAAGGGAAAC+TGG | + | chr8_3:9579998-9580017 | Msa1275560:CDS | 40.0% | |
| GCTGTCAAATTAGTGTAGGT+CGG | - | chr8_3:9580028-9580047 | None:intergenic | 40.0% | |
| TGACGCTGTCAAATTAGTGT+AGG | - | chr8_3:9580032-9580051 | None:intergenic | 40.0% | |
| !! | GCAGATACTAGAAGCATTTC+TGG | + | chr8_3:9580157-9580176 | Msa1275560:CDS | 40.0% |
| CAACAAGATGTTGGACTCAT+TGG | - | chr8_3:9580283-9580302 | None:intergenic | 40.0% | |
| GACAATGGACAACAAGATGT+TGG | - | chr8_3:9580292-9580311 | None:intergenic | 40.0% | |
| AAATGGGTGGTTCAGGAAGT+TGG | + | chr8_3:9577701-9577720 | Msa1275560:exon | 45.0% | |
| TAATTGTCGTGTGTCGGAGA+CGG | - | chr8_3:9577810-9577829 | None:intergenic | 45.0% | |
| TATGAAGCATGGATACCACG+TGG | + | chr8_3:9577905-9577924 | Msa1275560:intron | 45.0% | |
| !! | TATACGGTGTTGTGCTGTGT+TGG | + | chr8_3:9577981-9578000 | Msa1275560:intron | 45.0% |
| ! | GTGTTGTGCTGTGTTGGTAT+CGG | + | chr8_3:9577987-9578006 | Msa1275560:intron | 45.0% |
| ! | AGAAGCTTTTGCTGCTGCAA+TGG | + | chr8_3:9578277-9578296 | Msa1275560:CDS | 45.0% |
| !! | GAAGAGCTTTAAGGGCTTTG+AGG | + | chr8_3:9578742-9578761 | Msa1275560:CDS | 45.0% |
| !! | TTTAAGGGCTTTGAGGGCAT+TGG | + | chr8_3:9578749-9578768 | Msa1275560:CDS | 45.0% |
| AGGCTGCAAGCAATATTTCG+CGG | + | chr8_3:9578774-9578793 | Msa1275560:CDS | 45.0% | |
| !! | TGTTACTCTAAGGTGCATGC+AGG | + | chr8_3:9578821-9578840 | Msa1275560:CDS | 45.0% |
| CTCAATTACCAGGGTGGAAT+TGG | - | chr8_3:9579173-9579192 | None:intergenic | 45.0% | |
| !!! | TATGGTTTCGGTTTTGGAGG+AGG | + | chr8_3:9579243-9579262 | Msa1275560:intron | 45.0% |
| GTGCATATCTGATCCAGTAG+TGG | - | chr8_3:9579526-9579545 | None:intergenic | 45.0% | |
| ! | AGTTCTAGTCCAAGCTCAAG+AGG | + | chr8_3:9579623-9579642 | Msa1275560:CDS | 45.0% |
| ! | GTAAGAGCATGTTAGAACGC+TGG | + | chr8_3:9579687-9579706 | Msa1275560:CDS | 45.0% |
| GACATCTATTTGGACTCACC+TGG | + | chr8_3:9579746-9579765 | Msa1275560:CDS | 45.0% | |
| TTCTCATTCTTCCTGGACGA+TGG | - | chr8_3:9579779-9579798 | None:intergenic | 45.0% | |
| GAGCTTATAGCTGAAGACGA+CGG | - | chr8_3:9579911-9579930 | None:intergenic | 45.0% | |
| CACATCTGAATCACCAACCA+GGG | + | chr8_3:9579970-9579989 | Msa1275560:CDS | 45.0% | |
| TTTCTTTGCATCTTCCACCC+TGG | - | chr8_3:9579990-9580009 | None:intergenic | 45.0% | |
| GGGTGGAAGATGCAAAGAAA+AGG | + | chr8_3:9579990-9580009 | Msa1275560:CDS | 45.0% | |
| ACACGCTTTCAGCTTAGCTT+TGG | - | chr8_3:9580056-9580075 | None:intergenic | 45.0% | |
| GATGTTGGACTCATTGGTCA+TGG | - | chr8_3:9580277-9580296 | None:intergenic | 45.0% | |
| AATTGTCGTGTGTCGGAGAC+GGG | - | chr8_3:9577809-9577828 | None:intergenic | 50.0% | |
| TAGTGTCCACGTGTCATGTC+AGG | + | chr8_3:9577867-9577886 | Msa1275560:intron | 50.0% | |
| ! | ATGAAGAAGGGGCACAGCTT+TGG | + | chr8_3:9578215-9578234 | Msa1275560:CDS | 50.0% |
| AAAAGCAGACTGGATGCGGA+TGG | - | chr8_3:9578360-9578379 | None:intergenic | 50.0% | |
| CTCGAAAAGCAGACTGGATG+CGG | - | chr8_3:9578364-9578383 | None:intergenic | 50.0% | |
| AGAAGCCTCGAAAAGCAGAC+TGG | - | chr8_3:9578370-9578389 | None:intergenic | 50.0% | |
| !! | GTCTGCTTTTCGAGGCTTCT+TGG | + | chr8_3:9578370-9578389 | Msa1275560:CDS | 50.0% |
| TGCAAGCAATATTTCGCGGC+CGG | + | chr8_3:9578778-9578797 | Msa1275560:CDS | 50.0% | |
| GCCTCAAGGCAAAGAATGTC+CGG | + | chr8_3:9578865-9578884 | Msa1275560:CDS | 50.0% | |
| TCCGGACATTCTTTGCCTTG+AGG | - | chr8_3:9578869-9578888 | None:intergenic | 50.0% | |
| GTGTGACTTACCAGGAACTG+TGG | + | chr8_3:9579078-9579097 | Msa1275560:CDS | 50.0% | |
| GTCATACACCAATTCCACCC+TGG | + | chr8_3:9579162-9579181 | Msa1275560:CDS | 50.0% | |
| GGCTTAGAACCTCTTGAGCT+TGG | - | chr8_3:9579635-9579654 | None:intergenic | 50.0% | |
| CTGGATTGCAGCTAAGCCAT+GGG | + | chr8_3:9579706-9579725 | Msa1275560:CDS | 50.0% | |
| CCATGGGAGAGCAGGTTAAT+GGG | + | chr8_3:9579722-9579741 | Msa1275560:CDS | 50.0% | |
| ! | CTGAAGACGACGGAGTTGAT+TGG | - | chr8_3:9579901-9579920 | None:intergenic | 50.0% |
| !! | CCTGGTTGGTGATTCAGATG+TGG | - | chr8_3:9579972-9579991 | None:intergenic | 50.0% |
| CCACATCTGAATCACCAACC+AGG | + | chr8_3:9579969-9579988 | Msa1275560:CDS | 50.0% | |
| ATCTGAATCACCAACCAGGG+TGG | + | chr8_3:9579973-9579992 | Msa1275560:CDS | 50.0% | |
| TTTGCATCTTCCACCCTGGT+TGG | - | chr8_3:9579986-9580005 | None:intergenic | 50.0% | |
| !! | GCAAACTTGTTGAGGGTCTG+AGG | + | chr8_3:9580497-9580516 | Msa1275560:three_prime_UTR | 50.0% |
| ! | GTTGAGGGTCTGAGGTTAAG+CGG | + | chr8_3:9580505-9580524 | Msa1275560:three_prime_UTR | 50.0% |
| ! | TTGAGGGTCTGAGGTTAAGC+GGG | + | chr8_3:9580506-9580525 | Msa1275560:three_prime_UTR | 50.0% |
| ATTGTCGTGTGTCGGAGACG+GGG | - | chr8_3:9577808-9577827 | None:intergenic | 55.0% | |
| ! | ACGTGTCATGTCAGGTGTCG+CGG | + | chr8_3:9577875-9577894 | Msa1275560:intron | 55.0% |
| !! | CGCATCCAGTCTGCTTTTCG+AGG | + | chr8_3:9578362-9578381 | Msa1275560:CDS | 55.0% |
| GCGAGTTCAAGAACGCCTCA+AGG | + | chr8_3:9578851-9578870 | Msa1275560:CDS | 55.0% | |
| CAAGGGTGGTGTGACTTACC+AGG | + | chr8_3:9579070-9579089 | Msa1275560:CDS | 55.0% | |
| GCTGGATTGCAGCTAAGCCA+TGG | + | chr8_3:9579705-9579724 | Msa1275560:CDS | 55.0% | |
| GCCATGGGAGAGCAGGTTAA+TGG | + | chr8_3:9579721-9579740 | Msa1275560:CDS | 55.0% | |
| CCCATTAACCTGCTCTCCCA+TGG | - | chr8_3:9579725-9579744 | None:intergenic | 55.0% | |
| GCAGTGCTGCAGAGTGCAAA+GGG | - | chr8_3:9580399-9580418 | None:intergenic | 55.0% | |
| TGCAGTGCTGCAGAGTGCAA+AGG | - | chr8_3:9580400-9580419 | None:intergenic | 55.0% | |
| GCGACACCTGACATGACACG+TGG | - | chr8_3:9577876-9577895 | None:intergenic | 60.0% | |
| TGCTGCTGCAATGGCTGCTG+TGG | + | chr8_3:9578286-9578305 | Msa1275560:CDS | 60.0% | |
| !! | GGGCTTTGAGGGCATTGGTG+AGG | + | chr8_3:9578754-9578773 | Msa1275560:CDS | 60.0% |
| CAGCTAAGCCATGGGAGAGC+AGG | + | chr8_3:9579714-9579733 | Msa1275560:CDS | 60.0% | |
| CTGGACGATGGAGTCATGCC+AGG | - | chr8_3:9579767-9579786 | None:intergenic | 60.0% | |
| CTGGCATGACTCCATCGTCC+AGG | + | chr8_3:9579765-9579784 | Msa1275560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 9577584 | 9580774 | 9577584 | ID=Msa1275560;Name=Msa1275560 |
| chr8_3 | mRNA | 9577584 | 9580774 | 9577584 | ID=Msa1275560-mRNA-1;Parent=Msa1275560;Name=Msa1275560-mRNA-1;_AED=0.03;_eAED=0.03;_QI=119|1|1|1|1|1|5|504|438 |
| chr8_3 | exon | 9577584 | 9577762 | 9577584 | ID=Msa1275560-mRNA-1:exon:3996;Parent=Msa1275560-mRNA-1 |
| chr8_3 | exon | 9578137 | 9578391 | 9578137 | ID=Msa1275560-mRNA-1:exon:3997;Parent=Msa1275560-mRNA-1 |
| chr8_3 | exon | 9578738 | 9578965 | 9578738 | ID=Msa1275560-mRNA-1:exon:3998;Parent=Msa1275560-mRNA-1 |
| chr8_3 | exon | 9579070 | 9579183 | 9579070 | ID=Msa1275560-mRNA-1:exon:3999;Parent=Msa1275560-mRNA-1 |
| chr8_3 | exon | 9579611 | 9580774 | 9579611 | ID=Msa1275560-mRNA-1:exon:4000;Parent=Msa1275560-mRNA-1 |
| chr8_3 | five_prime_UTR | 9577584 | 9577702 | 9577584 | ID=Msa1275560-mRNA-1:five_prime_utr;Parent=Msa1275560-mRNA-1 |
| chr8_3 | CDS | 9577703 | 9577762 | 9577703 | ID=Msa1275560-mRNA-1:cds;Parent=Msa1275560-mRNA-1 |
| chr8_3 | CDS | 9578137 | 9578391 | 9578137 | ID=Msa1275560-mRNA-1:cds;Parent=Msa1275560-mRNA-1 |
| chr8_3 | CDS | 9578738 | 9578965 | 9578738 | ID=Msa1275560-mRNA-1:cds;Parent=Msa1275560-mRNA-1 |
| chr8_3 | CDS | 9579070 | 9579183 | 9579070 | ID=Msa1275560-mRNA-1:cds;Parent=Msa1275560-mRNA-1 |
| chr8_3 | CDS | 9579611 | 9580270 | 9579611 | ID=Msa1275560-mRNA-1:cds;Parent=Msa1275560-mRNA-1 |
| chr8_3 | three_prime_UTR | 9580271 | 9580774 | 9580271 | ID=Msa1275560-mRNA-1:three_prime_utr;Parent=Msa1275560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
