AlfalfaGEDB | Msa0860620

M. sativa cultivar zhongmu-4 / Msa0860620

KEGG: K21989
GO: -
PFAM: PF13967.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0860620	XP_003616997.1	98.172	766	14	0	1	766	1	766	0.0	1558

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0860620	sp\|Q9LVE4\|CSCL4_ARATH	75.871	746	177	2	1	743	1	746	0.0	1145

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0860620	G7KCP6	98.172	766	14	0	1	766	1	766	0.0	1558

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0035120	Msa0860620	0.803494	3.393863e-49	-8.615850e-47
Msa0130110	Msa0860620	0.806520	7.905805e-50	-8.615850e-47
Msa0176900	Msa0860620	0.808656	2.783009e-50	-8.615850e-47
Msa0307570	Msa0860620	0.806224	9.127152e-50	-8.615850e-47
Msa0435370	Msa0860620	0.817554	3.105311e-52	-8.615850e-47
Msa0435420	Msa0860620	0.822108	2.825613e-53	-8.615850e-47
Msa0435570	Msa0860620	0.837157	6.133166e-57	-8.615850e-47
Msa0519760	Msa0860620	0.832470	9.284223e-56	-8.615850e-47
Msa0519810	Msa0860620	0.828704	7.754515e-55	-8.615850e-47
Msa0519840	Msa0860620	0.831090	2.032229e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0860620	MtrunA17_Chr5g0439871	98.172	766	14	0	1	766	1	766	0.0	1558
Msa0860620	MtrunA17_Chr7g0259591	65.486	762	258	2	1	759	1	760	0.0	1047
Msa0860620	MtrunA17_Chr5g0409801	62.483	717	267	1	1	715	1	717	0.0	952
Msa0860620	MtrunA17_Chr4g0075301	72.500	520	139	2	1	517	1	519	0.0	781
Msa0860620	MtrunA17_Chr6g0453641	31.950	723	458	12	10	731	9	698	1.95e-137	422
Msa0860620	MtrunA17_Chr7g0217981	31.818	726	446	11	12	711	11	713	5.71e-129	401
Msa0860620	MtrunA17_Chr4g0042751	31.766	702	442	12	2	696	5	676	7.93e-123	384
Msa0860620	MtrunA17_Chr1g0152031	30.423	710	453	10	10	712	9	684	2.07e-117	372
Msa0860620	MtrunA17_Chr2g0285541	31.646	711	451	13	22	722	21	706	2.17e-114	362
Msa0860620	MtrunA17_Chr4g0075291	67.227	238	75	1	531	765	2	239	5.39e-112	340

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0860620	AT3G21620.1	75.871	746	177	2	1	743	1	746	1145
Msa0860620	AT1G11960.1	74.142	758	187	3	1	749	1	758	1143
Msa0860620	AT1G11960.3	74.142	758	187	3	1	749	1	758	1143
Msa0860620	AT4G22120.2	73.087	758	199	2	1	753	1	758	1138
Msa0860620	AT4G22120.4	73.087	758	199	2	1	753	1	758	1138
Msa0860620	AT4G22120.5	73.087	758	199	2	1	753	1	758	1138
Msa0860620	AT4G22120.1	73.087	758	199	2	1	753	1	758	1138
Msa0860620	AT4G22120.6	73.087	758	199	2	1	753	1	758	1138
Msa0860620	AT4G22120.3	73.087	758	199	2	1	753	1	758	1138
Msa0860620	AT4G15430.2	72.848	755	202	1	1	752	1	755	1135

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Find 181 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACCGTGAAGAAGCAA+TGG	0.595265	5_4:+59453871	Msa0860620:CDS
AAAATGCTAGGAGTGAAATG+GGG	0.730707	5_4:-59450387	None:intergenic
AAACCCCTCAGATACCATTT+CGG	0.427688	5_4:-59449379	None:intergenic
AAACTAGAAATCCAACAATA+TGG	0.385358	5_4:+59452415	Msa0860620:CDS
AAATACACCCTATCGTTTAT+AGG	0.291133	5_4:-59449355	None:intergenic
AAATCTTTCAAATTGAAGTT+TGG	0.330467	5_4:-59454704	None:intergenic
AACAATATGGTTGACTGAAT+GGG	0.447238	5_4:+59452428	Msa0860620:CDS
AACCAAGAATATGAGAGTGC+TGG	0.536287	5_4:+59454271	Msa0860620:CDS
AACCACATTTGAACGTTTCA+AGG	0.375878	5_4:-59450443	None:intergenic
AACTTGATCATACCGTGAAT+TGG	0.448801	5_4:-59450973	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAACAGAAAAAGAAGAGAA+TGG	-	chr5_4:59448505-59448524	None:intergenic	30.0%
AAAAAACTAGTAAAGTGGTG+GGG	-	chr5_4:59449035-59449054	None:intergenic	30.0%
GATTCAACCTATAAACGATA+GGG	+	chr5_4:59449348-59449367	Msa0860620:CDS	30.0%
AAATACACCCTATCGTTTAT+AGG	-	chr5_4:59449358-59449377	None:intergenic	30.0%
TTCAGAACTACAAACTTTAG+AGG	-	chr5_4:59449602-59449621	None:intergenic	30.0%
ATTGGTTAAAATCTACTCTC+TGG	-	chr5_4:59449641-59449660	None:intergenic	30.0%
CATGTTTACAACACTATGAA+AGG	+	chr5_4:59449903-59449922	Msa0860620:intron	30.0%
AAGGTAAACGTAACAAAATC+TGG	+	chr5_4:59449999-59450018	Msa0860620:intron	30.0%
AAGTAAGGACTAAACTTAGA+AGG	+	chr5_4:59450206-59450225	Msa0860620:intron	30.0%
TCTTGAAACTAGAAAAACGT+AGG	-	chr5_4:59450293-59450312	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	59448357	59455320	59448357	ID=Msa0860620;Name=Msa0860620
chr5_4	mRNA	59448357	59455320	59448357	ID=Msa0860620-mRNA-1;Parent=Msa0860620;Name=Msa0860620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=244\|1\|1\|1\|0.90\|0.83\|12\|401\|766
chr5_4	exon	59448357	59448576	59448357	ID=Msa0860620-mRNA-1:exon:18225;Parent=Msa0860620-mRNA-1
chr5_4	exon	59449238	59449575	59449238	ID=Msa0860620-mRNA-1:exon:18226;Parent=Msa0860620-mRNA-1
chr5_4	exon	59450372	59450518	59450372	ID=Msa0860620-mRNA-1:exon:18227;Parent=Msa0860620-mRNA-1
chr5_4	exon	59450847	59450982	59450847	ID=Msa0860620-mRNA-1:exon:18228;Parent=Msa0860620-mRNA-1
chr5_4	exon	59451137	59451238	59451137	ID=Msa0860620-mRNA-1:exon:18229;Parent=Msa0860620-mRNA-1
chr5_4	exon	59451643	59451762	59451643	ID=Msa0860620-mRNA-1:exon:18230;Parent=Msa0860620-mRNA-1
chr5_4	exon	59451901	59451981	59451901	ID=Msa0860620-mRNA-1:exon:18231;Parent=Msa0860620-mRNA-1
chr5_4	exon	59452306	59452646	59452306	ID=Msa0860620-mRNA-1:exon:18232;Parent=Msa0860620-mRNA-1
chr5_4	exon	59453332	59453577	59453332	ID=Msa0860620-mRNA-1:exon:18233;Parent=Msa0860620-mRNA-1
chr5_4	exon	59453715	59454039	59453715	ID=Msa0860620-mRNA-1:exon:18234;Parent=Msa0860620-mRNA-1
chr5_4	exon	59454256	59454489	59454256	ID=Msa0860620-mRNA-1:exon:18235;Parent=Msa0860620-mRNA-1
chr5_4	exon	59454665	59455320	59454665	ID=Msa0860620-mRNA-1:exon:18236;Parent=Msa0860620-mRNA-1
chr5_4	five_prime_UTR	59448357	59448576	59448357	ID=Msa0860620-mRNA-1:five_prime_utr;Parent=Msa0860620-mRNA-1
chr5_4	five_prime_UTR	59449238	59449261	59449238	ID=Msa0860620-mRNA-1:five_prime_utr;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59449262	59449575	59449262	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59450372	59450518	59450372	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59450847	59450982	59450847	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59451137	59451238	59451137	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59451643	59451762	59451643	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59451901	59451981	59451901	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59452306	59452646	59452306	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59453332	59453577	59453332	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59453715	59454039	59453715	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59454256	59454489	59454256	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	CDS	59454665	59454919	59454665	ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4	three_prime_UTR	59454920	59455320	59454920	ID=Msa0860620-mRNA-1:three_prime_utr;Parent=Msa0860620-mRNA-1

Gene Sequence

>Msa0860620

ATGGCTTCACTTGGCGATATAGGACTTGCAGCTGCAATCAACATCCTTACTGCATTTGCATTCTTACTGGCATTTGCCATACTTCGGATTCAACCTATAAACGATAGGGTGTATTTTCCGAAATGGTATCTGAGGGGTTTAAGGTCCAGTCCACTGCAAGGAGGGGCATTTGTGAGCAAATTTGTCAATATAGACTTCAGGTCATACATAAGGTTCTTGAACTGGATGCCTGCTGCATTGCAAATGCCGGAACCCGAACTAATTGAACATGCAGGCTTGGATTCTGCTGTATACTTGAGGATCTACTTACTCGGGCTGAAAATATTTGTCCCCATTTCACTCCTAGCATTTTCTGTTATGGTCCCTGTCAATTGGACTAATGACACCTTGAAACGTTCAAATGTGGTTTATAGCAGCATCGATAAGCTTTCAATTTCAAATATTCCACTAGGATCAAATAGATTTTGGACTCACTTGGTAATGGCTTATGCTTTTACCTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCAGCAATGAGATTGTCTTTTCTTGCATCTGAAAGACGCCGTCCTGACCAATTCACGGTACTTGTTAGGAATGTACCGCCTGATGCTGATGAATCAGTCAGTGAGCTAGTTGAACATTTCTTTTTGGTGAACCATCCTGATCAATATCTAACTCATCAGGTTGTTTACGATGCAAAGAAACTCTCTAGTCTAGTTGCTAAGAAGAAGAAAAAACAGAATTGGCTTGACTACTATGAACTTAAATATTCTAGAAACGAATCCATAAGGCCAACTAAAAAGACTGGCTTTTTAGGTCTTTGTGGCAGTAAAGTGGATGCTATTGATTTTTATACTGCTGCAATTGAGAGACTATCAAGAGACATAGAGCTGGAGAAAGATAAGGTGACAAAGAATCCTAAATCTATAATGCCAGCAGCCTTTGTTTCCTTCAAAACTCGTTGGGGTGCTGCAGTTTGTGCACAAACTCAACAAACTAGAAATCCAACAATATGGTTGACTGAATGGGCTCCAGAGCCCCGTGACATATACTGGGATAACATGGCTATACCATATGTTTCTCTCTCAATAAGGAGACTTGTAATTGGTGTTGCGTTCTTCTTTCTTACATTCTTTTTCATGATTCCCATTGCATTCGTACAGTCACTTGCTAATATAGAAGGCATTGAAAAAGCCGCACCATTCCTCAAGTCCATTATTGAAATCGACATCATCAAGTCTTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGCTATTCCTCATTTTTTTGCCAACAATATTGATGATCATGTCCAAGTTCGAAGGGTTTATAAGTCAGTCTTCTCTGGAAAGAAGATGCGCCTCAAGATATTACATCTTCCAGTTCATTAATGTGTTTCTGGGGAGCATAATTACCGGGACTGCATTCCAACAACTAGATAAATTCATTCATCAGTCTGCAAATGAAATTCCAAAGACAATTGGTGTTTCGATTCCAATGAAAGCAACTTTCTTCATAACATACATAATGGTTGATGGATGGGCAGGATGTGCTGGTGAGATTTTAAGGTTGAAGCCTTTGATATTTTATCACTTAAAGAATTTCTTGTTGGTGAAGACTGAAAAAGACCGTGAAGAAGCAATGGATCCTGGGACTATTGGTTTCAATACAGGAGAACCTCAGATACAACTTTATTTCTTGCTTGGCCTTGTGTATGCTGTAGTCACACCATTTCTACTTCCATACATCATTGTCTTTTTTGGTTTGGCATATCTTGTCTACCGTCATCAGATTATAAACGTGTACAACCAAGAATATGAGAGTGCTGGAGCATTCTGGCCTGATGTCCATGGACGTATTGTATTTGCATTAGTTGTCTCACAACTTCTGTTAATGGGATTATTGAGTACAAAAGAAGCTGCTAATTCGACTCCATTACTCATCGCTCTCCCAGTTTTGACAATATGGTTTCATCGGTTTTGCAAGGGAAGCTACGAACCTGCTTTTACTACTCATCCATTACAGGAAGCAATGGTCAAAGACACATTGGAGCGTACTAAAGAGCCAAACTTCAATTTGAAAGATTTCCTCTATGATGCATATATCCATCCCGTTTTCAAAGATGATGGAGACACAGACAGTGATGTGATGAGTCAAGAGTGGAAGGAAGAGCCGGTAATTGTCCAAACAAAACGCCAGTCGCGGAAGAACACACCTGTGCCTAGCAAACATAGTGGTGGCTCATTACAAGCCTCTATGCATGGCATTACTGATGTCTGA

Protein sequence

>Msa0860620

MASLGDIGLAAAINILTAFAFLLAFAILRIQPINDRVYFPKWYLRGLRSSPLQGGAFVSKFVNIDFRSYIRFLNWMPAALQMPEPELIEHAGLDSAVYLRIYLLGLKIFVPISLLAFSVMVPVNWTNDTLKRSNVVYSSIDKLSISNIPLGSNRFWTHLVMAYAFTFWTCYILKREYQIVAAMRLSFLASERRRPDQFTVLVRNVPPDADESVSELVEHFFLVNHPDQYLTHQVVYDAKKLSSLVAKKKKKQNWLDYYELKYSRNESIRPTKKTGFLGLCGSKVDAIDFYTAAIERLSRDIELEKDKVTKNPKSIMPAAFVSFKTRWGAAVCAQTQQTRNPTIWLTEWAPEPRDIYWDNMAIPYVSLSIRRLVIGVAFFFLTFFFMIPIAFVQSLANIEGIEKAAPFLKSIIEIDIIKSFIQGFLPGIALKLFLIFLPTILMIMSKFEGFISQSSLERRCASRYYIFQFINVFLGSIITGTAFQQLDKFIHQSANEIPKTIGVSIPMKATFFITYIMVDGWAGCAGEILRLKPLIFYHLKNFLLVKTEKDREEAMDPGTIGFNTGEPQIQLYFLLGLVYAVVTPFLLPYIIVFFGLAYLVYRHQIINVYNQEYESAGAFWPDVHGRIVFALVVSQLLLMGLLSTKEAANSTPLLIALPVLTIWFHRFCKGSYEPAFTTHPLQEAMVKDTLERTKEPNFNLKDFLYDAYIHPVFKDDGDTDSDVMSQEWKEEPVIVQTKRQSRKNTPVPSKHSGGSLQASMHGITDV*