Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0860620 | XP_003616997.1 | 98.172 | 766 | 14 | 0 | 1 | 766 | 1 | 766 | 0.0 | 1558 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0860620 | sp|Q9LVE4|CSCL4_ARATH | 75.871 | 746 | 177 | 2 | 1 | 743 | 1 | 746 | 0.0 | 1145 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0860620 | G7KCP6 | 98.172 | 766 | 14 | 0 | 1 | 766 | 1 | 766 | 0.0 | 1558 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0035120 | Msa0860620 | 0.803494 | 3.393863e-49 | -8.615850e-47 |
Msa0623910 | Msa0860620 | 0.803672 | 3.117332e-49 | -8.615850e-47 |
Msa0626270 | Msa0860620 | 0.804836 | 1.784314e-49 | -8.615850e-47 |
Msa0626460 | Msa0860620 | 0.805076 | 1.589203e-49 | -8.615850e-47 |
Msa0652770 | Msa0860620 | 0.803051 | 4.191836e-49 | -8.615850e-47 |
Msa0664090 | Msa0860620 | 0.805385 | 1.369711e-49 | -8.615850e-47 |
Msa0692880 | Msa0860620 | 0.811758 | 5.965331e-51 | -8.615850e-47 |
Msa0706760 | Msa0860620 | 0.823853 | 1.107771e-53 | -8.615850e-47 |
Msa0711400 | Msa0860620 | 0.807872 | 4.088644e-50 | -8.615850e-47 |
Msa0716890 | Msa0860620 | 0.800142 | 1.655816e-48 | -8.615850e-47 |
Msa0739810 | Msa0860620 | 0.862265 | 5.729568e-64 | -8.615850e-47 |
Msa0758030 | Msa0860620 | 0.824419 | 8.155545e-54 | -8.615850e-47 |
Msa0820140 | Msa0860620 | 0.895712 | 7.385419e-76 | -8.615850e-47 |
Msa0836010 | Msa0860620 | 0.811662 | 6.257942e-51 | -8.615850e-47 |
Msa0130110 | Msa0860620 | 0.806520 | 7.905805e-50 | -8.615850e-47 |
Msa0176900 | Msa0860620 | 0.808656 | 2.783009e-50 | -8.615850e-47 |
Msa0435370 | Msa0860620 | 0.817554 | 3.105311e-52 | -8.615850e-47 |
Msa0435420 | Msa0860620 | 0.822108 | 2.825613e-53 | -8.615850e-47 |
Msa0435570 | Msa0860620 | 0.837157 | 6.133166e-57 | -8.615850e-47 |
Msa0307570 | Msa0860620 | 0.806224 | 9.127152e-50 | -8.615850e-47 |
Msa0519760 | Msa0860620 | 0.832470 | 9.284223e-56 | -8.615850e-47 |
Msa0519810 | Msa0860620 | 0.828704 | 7.754515e-55 | -8.615850e-47 |
Msa0519840 | Msa0860620 | 0.831090 | 2.032229e-55 | -8.615850e-47 |
Msa0527820 | Msa0860620 | 0.805543 | 1.269154e-49 | -8.615850e-47 |
Msa0586450 | Msa0860620 | 0.801508 | 8.710079e-49 | -8.615850e-47 |
Msa0860620 | Msa0902360 | 0.800591 | 1.341080e-48 | -8.615850e-47 |
Msa0860620 | Msa0984540 | 0.803644 | 3.159951e-49 | -8.615850e-47 |
Msa0860620 | Msa1085330 | 0.803712 | 3.058228e-49 | -8.615850e-47 |
Msa0860620 | Msa1111290 | 0.806293 | 8.825579e-50 | -8.615850e-47 |
Msa0860620 | Msa1130950 | 0.802481 | 5.497757e-49 | -8.615850e-47 |
Msa0860620 | Msa1206230 | 0.805903 | 1.065925e-49 | -8.615850e-47 |
Msa0860620 | Msa1257440 | 0.801546 | 8.556126e-49 | -8.615850e-47 |
Msa0860620 | Msa1262670 | 0.803582 | 3.253931e-49 | -8.615850e-47 |
Msa0860620 | Msa1277390 | 0.805259 | 1.455300e-49 | -8.615850e-47 |
Msa0860620 | Msa1305250 | 0.804040 | 2.614474e-49 | -8.615850e-47 |
Msa0860620 | Msa1371910 | 0.816245 | 6.106727e-52 | -8.615850e-47 |
Msa0860620 | Msa1403710 | 0.804243 | 2.372417e-49 | -8.615850e-47 |
Msa0860620 | Msa1427110 | 0.832472 | 9.270887e-56 | -8.615850e-47 |
Msa0860620 | Msa1459460 | 0.815826 | 7.577008e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0860620 | MtrunA17_Chr5g0439871 | 98.172 | 766 | 14 | 0 | 1 | 766 | 1 | 766 | 0.0 | 1558 |
Msa0860620 | MtrunA17_Chr7g0259591 | 65.486 | 762 | 258 | 2 | 1 | 759 | 1 | 760 | 0.0 | 1047 |
Msa0860620 | MtrunA17_Chr5g0409801 | 62.483 | 717 | 267 | 1 | 1 | 715 | 1 | 717 | 0.0 | 952 |
Msa0860620 | MtrunA17_Chr4g0075301 | 72.500 | 520 | 139 | 2 | 1 | 517 | 1 | 519 | 0.0 | 781 |
Msa0860620 | MtrunA17_Chr6g0453641 | 31.950 | 723 | 458 | 12 | 10 | 731 | 9 | 698 | 1.95e-137 | 422 |
Msa0860620 | MtrunA17_Chr7g0217981 | 31.818 | 726 | 446 | 11 | 12 | 711 | 11 | 713 | 5.71e-129 | 401 |
Msa0860620 | MtrunA17_Chr4g0042751 | 31.766 | 702 | 442 | 12 | 2 | 696 | 5 | 676 | 7.93e-123 | 384 |
Msa0860620 | MtrunA17_Chr1g0152031 | 30.423 | 710 | 453 | 10 | 10 | 712 | 9 | 684 | 2.07e-117 | 372 |
Msa0860620 | MtrunA17_Chr2g0285541 | 31.646 | 711 | 451 | 13 | 22 | 722 | 21 | 706 | 2.17e-114 | 362 |
Msa0860620 | MtrunA17_Chr4g0075291 | 67.227 | 238 | 75 | 1 | 531 | 765 | 2 | 239 | 5.39e-112 | 340 |
Msa0860620 | MtrunA17_Chr5g0418061 | 30.404 | 717 | 460 | 13 | 2 | 711 | 5 | 689 | 6.80e-104 | 334 |
Msa0860620 | MtrunA17_Chr3g0084121 | 34.236 | 406 | 249 | 5 | 300 | 702 | 2 | 392 | 1.11e-71 | 240 |
Msa0860620 | MtrunA17_Chr3g0135281 | 45.361 | 97 | 51 | 2 | 318 | 413 | 59 | 154 | 4.73e-20 | 87.8 |
Msa0860620 | MtrunA17_Chr4g0037231 | 86.000 | 50 | 7 | 0 | 106 | 155 | 88 | 137 | 8.26e-20 | 88.2 |
Msa0860620 | MtrunA17_Chr3g0135291 | 35.294 | 187 | 112 | 4 | 421 | 605 | 5 | 184 | 1.36e-19 | 87.8 |
Msa0860620 | MtrunA17_Chr3g0084131 | 30.000 | 150 | 101 | 3 | 113 | 260 | 57 | 204 | 1.39e-19 | 88.2 |
Msa0860620 | MtrunA17_Chr8g0371331 | 21.605 | 648 | 376 | 22 | 86 | 617 | 75 | 706 | 7.01e-12 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0860620 | AT3G21620.1 | 75.871 | 746 | 177 | 2 | 1 | 743 | 1 | 746 | 0.0 | 1145 |
Msa0860620 | AT1G11960.1 | 74.142 | 758 | 187 | 3 | 1 | 749 | 1 | 758 | 0.0 | 1143 |
Msa0860620 | AT1G11960.3 | 74.142 | 758 | 187 | 3 | 1 | 749 | 1 | 758 | 0.0 | 1143 |
Msa0860620 | AT4G22120.2 | 73.087 | 758 | 199 | 2 | 1 | 753 | 1 | 758 | 0.0 | 1138 |
Msa0860620 | AT4G22120.4 | 73.087 | 758 | 199 | 2 | 1 | 753 | 1 | 758 | 0.0 | 1138 |
Msa0860620 | AT4G22120.5 | 73.087 | 758 | 199 | 2 | 1 | 753 | 1 | 758 | 0.0 | 1138 |
Msa0860620 | AT4G22120.1 | 73.087 | 758 | 199 | 2 | 1 | 753 | 1 | 758 | 0.0 | 1138 |
Msa0860620 | AT4G22120.6 | 73.087 | 758 | 199 | 2 | 1 | 753 | 1 | 758 | 0.0 | 1138 |
Msa0860620 | AT4G22120.3 | 73.087 | 758 | 199 | 2 | 1 | 753 | 1 | 758 | 0.0 | 1138 |
Msa0860620 | AT4G15430.2 | 72.848 | 755 | 202 | 1 | 1 | 752 | 1 | 755 | 0.0 | 1135 |
Msa0860620 | AT4G15430.1 | 72.751 | 756 | 202 | 2 | 1 | 752 | 1 | 756 | 0.0 | 1132 |
Msa0860620 | AT4G04340.2 | 73.026 | 760 | 200 | 2 | 1 | 755 | 1 | 760 | 0.0 | 1127 |
Msa0860620 | AT4G04340.1 | 73.026 | 760 | 200 | 2 | 1 | 755 | 1 | 760 | 0.0 | 1127 |
Msa0860620 | AT4G04340.3 | 73.026 | 760 | 200 | 2 | 1 | 755 | 1 | 760 | 0.0 | 1127 |
Msa0860620 | AT1G62320.3 | 72.120 | 764 | 208 | 3 | 1 | 759 | 1 | 764 | 0.0 | 1110 |
Msa0860620 | AT1G62320.5 | 72.120 | 764 | 208 | 3 | 1 | 759 | 1 | 764 | 0.0 | 1110 |
Msa0860620 | AT1G62320.4 | 71.990 | 764 | 207 | 4 | 1 | 759 | 1 | 762 | 0.0 | 1106 |
Msa0860620 | AT1G62320.1 | 71.073 | 764 | 207 | 5 | 1 | 759 | 1 | 755 | 0.0 | 1084 |
Msa0860620 | AT4G02900.4 | 65.608 | 756 | 257 | 3 | 1 | 755 | 1 | 754 | 0.0 | 1030 |
Msa0860620 | AT4G02900.3 | 65.608 | 756 | 257 | 3 | 1 | 755 | 1 | 754 | 0.0 | 1030 |
Msa0860620 | AT4G02900.1 | 65.608 | 756 | 257 | 3 | 1 | 755 | 1 | 754 | 0.0 | 1029 |
Msa0860620 | AT1G11960.2 | 75.822 | 608 | 144 | 1 | 1 | 605 | 1 | 608 | 0.0 | 945 |
Msa0860620 | AT1G32090.1 | 59.524 | 756 | 297 | 3 | 1 | 747 | 1 | 756 | 0.0 | 915 |
Msa0860620 | AT1G62320.2 | 74.671 | 608 | 151 | 1 | 1 | 605 | 1 | 608 | 0.0 | 911 |
Msa0860620 | AT4G02900.2 | 64.706 | 595 | 208 | 2 | 161 | 755 | 1 | 593 | 0.0 | 811 |
Msa0860620 | AT3G01100.1 | 33.101 | 716 | 447 | 10 | 10 | 719 | 9 | 698 | 1.82e-136 | 420 |
Msa0860620 | AT3G01100.4 | 33.101 | 716 | 447 | 10 | 10 | 719 | 55 | 744 | 5.91e-136 | 420 |
Msa0860620 | AT3G01100.3 | 35.324 | 586 | 357 | 7 | 139 | 719 | 15 | 583 | 4.22e-122 | 379 |
Msa0860620 | AT1G69450.2 | 30.000 | 730 | 474 | 11 | 4 | 725 | 3 | 703 | 2.84e-121 | 380 |
Msa0860620 | AT1G69450.1 | 30.000 | 730 | 474 | 11 | 4 | 725 | 3 | 703 | 2.84e-121 | 380 |
Msa0860620 | AT1G69450.3 | 28.930 | 757 | 474 | 12 | 4 | 725 | 3 | 730 | 8.27e-116 | 367 |
Msa0860620 | AT1G58520.4 | 30.483 | 725 | 479 | 9 | 10 | 731 | 9 | 711 | 2.86e-112 | 358 |
Msa0860620 | AT1G58520.1 | 30.483 | 725 | 479 | 9 | 10 | 731 | 9 | 711 | 2.86e-112 | 358 |
Msa0860620 | AT1G58520.7 | 30.483 | 725 | 479 | 9 | 10 | 731 | 9 | 711 | 2.86e-112 | 358 |
Msa0860620 | AT1G58520.6 | 30.483 | 725 | 479 | 9 | 10 | 731 | 9 | 711 | 2.86e-112 | 358 |
Msa0860620 | AT1G58520.2 | 30.483 | 725 | 479 | 9 | 10 | 731 | 9 | 711 | 2.86e-112 | 358 |
Msa0860620 | AT3G01100.2 | 32.888 | 599 | 376 | 8 | 10 | 605 | 9 | 584 | 1.61e-110 | 349 |
Msa0860620 | AT3G54510.2 | 30.956 | 701 | 451 | 10 | 10 | 707 | 9 | 679 | 1.31e-105 | 339 |
Msa0860620 | AT1G10090.1 | 29.471 | 699 | 460 | 7 | 10 | 701 | 9 | 681 | 1.34e-102 | 333 |
Msa0860620 | AT1G30360.1 | 32.698 | 682 | 414 | 11 | 22 | 684 | 21 | 676 | 1.41e-102 | 332 |
Msa0860620 | AT1G58520.5 | 31.040 | 596 | 396 | 6 | 139 | 731 | 10 | 593 | 1.39e-94 | 308 |
Msa0860620 | AT3G54510.4 | 31.240 | 605 | 389 | 9 | 106 | 707 | 4 | 584 | 3.28e-91 | 298 |
Msa0860620 | AT3G54510.1 | 31.240 | 605 | 389 | 9 | 106 | 707 | 4 | 584 | 3.28e-91 | 298 |
Msa0860620 | AT3G54510.3 | 31.720 | 599 | 379 | 9 | 10 | 605 | 9 | 580 | 7.27e-88 | 289 |
Msa0860620 | AT3G54510.5 | 32.207 | 503 | 317 | 8 | 106 | 605 | 4 | 485 | 9.64e-74 | 248 |
Msa0860620 | AT3G54510.6 | 31.214 | 519 | 331 | 8 | 192 | 707 | 5 | 500 | 1.22e-73 | 249 |
Msa0860620 | AT4G35870.1 | 21.839 | 435 | 289 | 8 | 86 | 474 | 92 | 521 | 4.99e-13 | 73.2 |
Find 181 sgRNAs with CRISPR-Local
Find 385 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAGTTCATTAATGTGTTTC+TGG | 0.046711 | 5_4:+59453491 | Msa0860620:CDS |
TTCTCAGAAATTCACAATTT+TGG | 0.122166 | 5_4:+59448543 | Msa0860620:five_prime_UTR |
TATGAAAAGCAAGAAAATTT+TGG | 0.136309 | 5_4:+59455096 | Msa0860620:three_prime_UTR |
GCTGCTGGCATTATAGATTT+AGG | 0.215346 | 5_4:-59452339 | None:intergenic |
TGTCTCACAACTTCTGTTAA+TGG | 0.225729 | 5_4:+59454339 | Msa0860620:CDS |
TACTGCATTTGCATTCTTAC+TGG | 0.245781 | 5_4:+59449309 | Msa0860620:CDS |
CTCCAGCACTCTCATATTCT+TGG | 0.254312 | 5_4:-59454273 | None:intergenic |
TTTATACAAGGTTTCCTTCC+TGG | 0.259327 | 5_4:+59453348 | Msa0860620:CDS |
TGAAACCATATTGTCAAAAC+TGG | 0.272330 | 5_4:-59454415 | None:intergenic |
CAGAGCCCCGTGACATATAC+TGG | 0.276735 | 5_4:+59452454 | Msa0860620:CDS |
ATCGAAACACCAATTGTCTT+TGG | 0.283868 | 5_4:-59453719 | None:intergenic |
AAATACACCCTATCGTTTAT+AGG | 0.291133 | 5_4:-59449355 | None:intergenic |
ATCCATAAGGCCAACTAAAA+AGG | 0.297259 | 5_4:+59451741 | Msa0860620:CDS |
TCTGCTCATTCTCAAGATTT+CGG | 0.301984 | 5_4:-59455276 | None:intergenic |
CTGTTATGGTCCCTGTCAAT+TGG | 0.313291 | 5_4:+59450410 | Msa0860620:CDS |
AATGGTATCTGAGGGGTTTA+AGG | 0.314148 | 5_4:+59449383 | Msa0860620:CDS |
GTCTCACAACTTCTGTTAAT+GGG | 0.315219 | 5_4:+59454340 | Msa0860620:CDS |
ATAACATTACATTTCAATAA+TGG | 0.324210 | 5_4:-59452634 | None:intergenic |
ATGAAGAAAGTTGCTTTCAT+TGG | 0.328257 | 5_4:-59453743 | None:intergenic |
GCAATGGATCCTGGGACTAT+TGG | 0.330247 | 5_4:+59453887 | Msa0860620:CDS |
AAATCTTTCAAATTGAAGTT+TGG | 0.330467 | 5_4:-59454704 | None:intergenic |
GCCTGCATGTTCAATTAGTT+CGG | 0.335017 | 5_4:-59449515 | None:intergenic |
ATGGCTTCACTTGGCGATAT+AGG | 0.341404 | 5_4:+59449262 | Msa0860620:CDS |
TCTATATACAAAAGAAAATC+TGG | 0.344704 | 5_4:-59455073 | None:intergenic |
CAGTTCATTAATGTGTTTCT+GGG | 0.345844 | 5_4:+59453492 | Msa0860620:CDS |
TGTTTCCTTCAAAACTCGTT+GGG | 0.348255 | 5_4:+59452365 | Msa0860620:CDS |
CACAAGGATGGTCGATGTTA+TGG | 0.349284 | 5_4:+59455250 | Msa0860620:three_prime_UTR |
GACAGATAAGAGCAATATTC+AGG | 0.350558 | 5_4:+59455124 | Msa0860620:three_prime_UTR |
TTATACAAGGTTTCCTTCCT+GGG | 0.352560 | 5_4:+59453349 | Msa0860620:CDS |
TCAATAAGGAGACTTGTAAT+TGG | 0.363088 | 5_4:+59452507 | Msa0860620:CDS |
TGTTCAATTAGTTCGGGTTC+CGG | 0.363618 | 5_4:-59449508 | None:intergenic |
TATAGGTTGAATCCGAAGTA+TGG | 0.364032 | 5_4:-59449338 | None:intergenic |
TTTCTTCATAACATACATAA+TGG | 0.366062 | 5_4:+59453757 | Msa0860620:CDS |
CATTTGTGCAGGTACTTGTT+AGG | 0.372092 | 5_4:+59451126 | Msa0860620:intron |
ATGAGAGTGCTGGAGCATTC+TGG | 0.373825 | 5_4:+59454281 | Msa0860620:CDS |
AACCACATTTGAACGTTTCA+AGG | 0.375878 | 5_4:-59450443 | None:intergenic |
CCTGCATGTTCAATTAGTTC+GGG | 0.381047 | 5_4:-59449514 | None:intergenic |
AGAAAATGCTAGGAGTGAAA+TGG | 0.384869 | 5_4:-59450389 | None:intergenic |
AAACTAGAAATCCAACAATA+TGG | 0.385358 | 5_4:+59452415 | Msa0860620:CDS |
TCACTTAAAGAATTTCTTGT+TGG | 0.388253 | 5_4:+59453838 | Msa0860620:CDS |
CAGTATATGTCACGGGGCTC+TGG | 0.392278 | 5_4:-59452453 | None:intergenic |
CATATGTTTCTCTCTCAATA+AGG | 0.392484 | 5_4:+59452493 | Msa0860620:CDS |
CAACAATATGGTTGACTGAA+TGG | 0.398254 | 5_4:+59452427 | Msa0860620:CDS |
TTGACTTCAACTCAAATCTA+AGG | 0.398336 | 5_4:-59454936 | None:intergenic |
GGGACTATTGGTTTCAATAC+AGG | 0.399816 | 5_4:+59453899 | Msa0860620:CDS |
ACTTATAAACCCTTCGAACT+TGG | 0.400798 | 5_4:-59453424 | None:intergenic |
CGTGAAGAAGCAATGGATCC+TGG | 0.400945 | 5_4:+59453878 | Msa0860620:CDS |
CATTCAGTCAACCATATTGT+TGG | 0.403385 | 5_4:-59452426 | None:intergenic |
TGCCCCTCCTTGCAGTGGAC+TGG | 0.405812 | 5_4:-59449407 | None:intergenic |
GTTTATAAGTCAGTCTTCTC+TGG | 0.406786 | 5_4:+59453437 | Msa0860620:CDS |
GAAAATGCTAGGAGTGAAAT+GGG | 0.410463 | 5_4:-59450388 | None:intergenic |
GAATGAATTTATCTAGTTGT+TGG | 0.411008 | 5_4:-59453539 | None:intergenic |
GTCTCCATCATCTTTGAAAA+CGG | 0.412118 | 5_4:-59454750 | None:intergenic |
CCAGAAACACATTAATGAAC+TGG | 0.416762 | 5_4:-59453491 | None:intergenic |
ATACAACTTTATTTCTTGCT+TGG | 0.417063 | 5_4:+59453932 | Msa0860620:CDS |
CAGGATCCATTGCTTCTTCA+CGG | 0.418998 | 5_4:-59453877 | None:intergenic |
CAGTCACTTGCTAATATAGA+AGG | 0.422929 | 5_4:+59452582 | Msa0860620:CDS |
AATTTGTCAATATAGACTTC+AGG | 0.427589 | 5_4:+59449440 | Msa0860620:CDS |
AAACCCCTCAGATACCATTT+CGG | 0.427688 | 5_4:-59449379 | None:intergenic |
GATGGATGGGCAGGATGTGC+TGG | 0.429016 | 5_4:+59453782 | Msa0860620:CDS |
GACATGATCATCAATATTGT+TGG | 0.439726 | 5_4:-59453402 | None:intergenic |
TCCGGCATTTGCAATGCAGC+AGG | 0.444627 | 5_4:-59449490 | None:intergenic |
AACAATATGGTTGACTGAAT+GGG | 0.447238 | 5_4:+59452428 | Msa0860620:CDS |
CATACATAAGGTTCTTGAAC+TGG | 0.447815 | 5_4:+59449464 | Msa0860620:CDS |
AACTTGATCATACCGTGAAT+TGG | 0.448801 | 5_4:-59450973 | None:intergenic |
ATATTCCACTAGGATCAAAT+AGG | 0.449169 | 5_4:+59450497 | Msa0860620:CDS |
GGACATGCTATATCTTGAAA+AGG | 0.449434 | 5_4:+59450888 | Msa0860620:CDS |
ATAACATACATAATGGTTGA+TGG | 0.452299 | 5_4:+59453764 | Msa0860620:CDS |
TGATCAATATCTAACTCATC+AGG | 0.460224 | 5_4:+59451217 | Msa0860620:CDS |
TCTCCATCATCTTTGAAAAC+GGG | 0.460410 | 5_4:-59454749 | None:intergenic |
TTTCTGGGGAGCATAATTAC+CGG | 0.466924 | 5_4:+59453507 | Msa0860620:CDS |
TGCAGAATTCCAAAGACAAT+TGG | 0.469700 | 5_4:+59453710 | Msa0860620:intron |
CAGGTGTGTTCTTCCGCGAC+TGG | 0.472382 | 5_4:-59454835 | None:intergenic |
ATATCTTGTCTACCGTCATC+AGG | 0.473416 | 5_4:+59454018 | Msa0860620:CDS |
ATGATGTATGGAAGTAGAAA+TGG | 0.475585 | 5_4:-59453977 | None:intergenic |
TACTGGCATTTGCCATACTT+CGG | 0.477975 | 5_4:+59449326 | Msa0860620:CDS |
CTGACTGATTCATCAGCATC+AGG | 0.478193 | 5_4:-59451158 | None:intergenic |
TTGTTTCCTTCAAAACTCGT+TGG | 0.486952 | 5_4:+59452364 | Msa0860620:CDS |
ACTAATTGAACATGCAGGCT+TGG | 0.487155 | 5_4:+59449519 | Msa0860620:CDS |
GTGTCATTAGTCCAATTGAC+AGG | 0.489392 | 5_4:-59450421 | None:intergenic |
TGTTAGTTCAACGCTCAAGC+AGG | 0.497157 | 5_4:-59448421 | None:intergenic |
ACAATACGTCCATGGACATC+AGG | 0.498283 | 5_4:-59454304 | None:intergenic |
ATTCTAGAAACGAATCCATA+AGG | 0.498469 | 5_4:+59451728 | Msa0860620:CDS |
CGTTAAATTTCAGATAGAGC+TGG | 0.503238 | 5_4:+59452293 | Msa0860620:intron |
CTTAATGACAAGTGCATGGT+TGG | 0.510333 | 5_4:+59454979 | Msa0860620:three_prime_UTR |
TAGTTGTTGGAATGCAGTCC+CGG | 0.513391 | 5_4:-59453526 | None:intergenic |
CATACATAATGGTTGATGGA+TGG | 0.514476 | 5_4:+59453768 | Msa0860620:CDS |
GACATGCTATATCTTGAAAA+GGG | 0.520309 | 5_4:+59450889 | Msa0860620:CDS |
GATCATACCGTGAATTGGTC+AGG | 0.520969 | 5_4:-59450968 | None:intergenic |
TAGACTTCAGGTCATACATA+AGG | 0.521133 | 5_4:+59449452 | Msa0860620:CDS |
GGTCCAGTCCACTGCAAGGA+GGG | 0.521589 | 5_4:+59449404 | Msa0860620:CDS |
TTTAAGTGATAAAATATCAA+AGG | 0.523335 | 5_4:-59453824 | None:intergenic |
TTGAAGGAAACAAAGGCTGC+TGG | 0.523880 | 5_4:-59452354 | None:intergenic |
TGGATTCTGCTGTATACTTG+AGG | 0.524624 | 5_4:+59449539 | Msa0860620:CDS |
TGATGAGTTAGATATTGATC+AGG | 0.525466 | 5_4:-59451215 | None:intergenic |
ACATTTCAATAATGGACTTG+AGG | 0.530070 | 5_4:-59452626 | None:intergenic |
AGTGACTGTACGAATGCAAT+GGG | 0.531271 | 5_4:-59452567 | None:intergenic |
TAAATCTATAGACAGATTGA+AGG | 0.531434 | 5_4:+59455009 | Msa0860620:three_prime_UTR |
GCCTGCTGCATTGCAAATGC+CGG | 0.532910 | 5_4:+59449489 | Msa0860620:CDS |
ATGATCATGTCCAAGTTCGA+AGG | 0.533063 | 5_4:+59453414 | Msa0860620:CDS |
AACCAAGAATATGAGAGTGC+TGG | 0.536287 | 5_4:+59454271 | Msa0860620:CDS |
TACTTGAGGATCTACTTACT+CGG | 0.536863 | 5_4:+59449553 | Msa0860620:CDS |
CACCTTGAAACGTTCAAATG+TGG | 0.537370 | 5_4:+59450441 | Msa0860620:CDS |
CTTATTGAGAGAGAAACATA+TGG | 0.537706 | 5_4:-59452492 | None:intergenic |
AGGTCTTTGTGGCAGTAAAG+TGG | 0.540543 | 5_4:+59451912 | Msa0860620:CDS |
TCTATAGACAGATTGAAGGT+TGG | 0.543525 | 5_4:+59455013 | Msa0860620:three_prime_UTR |
TCAAGAGTGGAAGGAAGAGC+CGG | 0.545999 | 5_4:+59454793 | Msa0860620:CDS |
GAGCCACCACTATGTTTGCT+AGG | 0.546081 | 5_4:-59454860 | None:intergenic |
GATAGAGCTGGAGAAAGATA+AGG | 0.546330 | 5_4:+59452305 | Msa0860620:intron |
GTTATCCCAGTATATGTCAC+GGG | 0.546554 | 5_4:-59452460 | None:intergenic |
GGATTCAACCTATAAACGAT+AGG | 0.548438 | 5_4:+59449347 | Msa0860620:CDS |
AAGAAATAAAGTTGTATCTG+AGG | 0.548593 | 5_4:-59453926 | None:intergenic |
TCAAAGAACATGGCTTCACT+TGG | 0.548706 | 5_4:+59449253 | Msa0860620:exon |
ATACATAATGGTTGATGGAT+GGG | 0.551192 | 5_4:+59453769 | Msa0860620:CDS |
ACGCCGTCCTGACCAATTCA+CGG | 0.551285 | 5_4:+59450961 | Msa0860620:CDS |
ATCAGTAATGCCATGCATAG+AGG | 0.551970 | 5_4:-59454891 | None:intergenic |
ACTGGGAGAGCGATGAGTAA+TGG | 0.553292 | 5_4:-59454397 | None:intergenic |
GTGAAGAAGCAATGGATCCT+GGG | 0.559253 | 5_4:+59453879 | Msa0860620:CDS |
CACTCATAGCGGAGACCACA+AGG | 0.559832 | 5_4:+59455234 | Msa0860620:three_prime_UTR |
TCCAAACAAAACGCCAGTCG+CGG | 0.560248 | 5_4:+59454822 | Msa0860620:CDS |
CCACTATGTTTGCTAGGCAC+AGG | 0.561692 | 5_4:-59454854 | None:intergenic |
GCATTCTGGCCTGATGTCCA+TGG | 0.563003 | 5_4:+59454295 | Msa0860620:CDS |
GTAAGAATGCAAATGCAGTA+AGG | 0.563890 | 5_4:-59449306 | None:intergenic |
TCAATAATGGACTTGAGGAA+TGG | 0.570509 | 5_4:-59452621 | None:intergenic |
GATTCAACCTATAAACGATA+GGG | 0.570671 | 5_4:+59449348 | Msa0860620:CDS |
GTCAAGGACTAAGTTCGTGT+TGG | 0.570794 | 5_4:+59454954 | Msa0860620:three_prime_UTR |
GTTAGTTCAACGCTCAAGCA+GGG | 0.572095 | 5_4:-59448420 | None:intergenic |
ATAATGGTTGATGGATGGGC+AGG | 0.572967 | 5_4:+59453773 | Msa0860620:CDS |
TCAATTTCAAATATTCCACT+AGG | 0.576715 | 5_4:+59450487 | Msa0860620:CDS |
TTCTGGGGAGCATAATTACC+GGG | 0.577184 | 5_4:+59453508 | Msa0860620:CDS |
ACAAATGCCCCTCCTTGCAG+TGG | 0.577690 | 5_4:-59449412 | None:intergenic |
TGTGATGAGTCAAGAGTGGA+AGG | 0.578062 | 5_4:+59454784 | Msa0860620:CDS |
TTAGATTTGAGTTGAAGTCA+AGG | 0.578851 | 5_4:+59454938 | Msa0860620:three_prime_UTR |
AAGTGACTGTACGAATGCAA+TGG | 0.582913 | 5_4:-59452568 | None:intergenic |
AATGGATGAGTAGTAAAAGC+AGG | 0.586318 | 5_4:-59454463 | None:intergenic |
GTCCAGTCCACTGCAAGGAG+GGG | 0.588159 | 5_4:+59449405 | Msa0860620:CDS |
GTTTCCTTCAAAACTCGTTG+GGG | 0.588764 | 5_4:+59452366 | Msa0860620:CDS |
AGTTCATTAATGTGTTTCTG+GGG | 0.590166 | 5_4:+59453493 | Msa0860620:CDS |
AATAGCTTCAAAGCAATCCC+AGG | 0.590192 | 5_4:-59453366 | None:intergenic |
TGATCATGTCCAAGTTCGAA+GGG | 0.591481 | 5_4:+59453415 | Msa0860620:CDS |
GGACCATAACAGAAAATGCT+AGG | 0.593519 | 5_4:-59450399 | None:intergenic |
AAAAGACCGTGAAGAAGCAA+TGG | 0.595265 | 5_4:+59453871 | Msa0860620:CDS |
CTGGAAGATGTAATATCTTG+AGG | 0.595341 | 5_4:-59453472 | None:intergenic |
CATCATCTTTGAAAACGGGA+TGG | 0.595460 | 5_4:-59454745 | None:intergenic |
ATGCAAATACAATACGTCCA+TGG | 0.598039 | 5_4:-59454312 | None:intergenic |
CAAGATATAGCATGTCCAGA+AGG | 0.603409 | 5_4:-59450882 | None:intergenic |
GATGGATATATGCATCATAG+AGG | 0.603788 | 5_4:-59454727 | None:intergenic |
TCATTACAAGCCTCTATGCA+TGG | 0.604132 | 5_4:+59454881 | Msa0860620:CDS |
AGCAATGGTCAAAGACACAT+TGG | 0.604396 | 5_4:+59454667 | Msa0860620:CDS |
CCCGAACTAATTGAACATGC+AGG | 0.605147 | 5_4:+59449514 | Msa0860620:CDS |
TGATAGTAAATCAAAGAACA+TGG | 0.609951 | 5_4:+59449243 | Msa0860620:exon |
TGACATATACTGGGATAACA+TGG | 0.614941 | 5_4:+59452464 | Msa0860620:CDS |
TGTTATCCCAGTATATGTCA+CGG | 0.616689 | 5_4:-59452461 | None:intergenic |
GTATTGAAACCAATAGTCCC+AGG | 0.617054 | 5_4:-59453896 | None:intergenic |
TGCGTGAACTTAGGAAGCAA+TGG | 0.622167 | 5_4:+59454652 | Msa0860620:intron |
ACTTGAGGATCTACTTACTC+GGG | 0.622654 | 5_4:+59449554 | Msa0860620:CDS |
ACGTACCTATTTGATCCTAG+TGG | 0.628112 | 5_4:-59450502 | None:intergenic |
GAAACCATATTGTCAAAACT+GGG | 0.637941 | 5_4:-59454414 | None:intergenic |
CATAGCGGAGACCACAAGGA+TGG | 0.640973 | 5_4:+59455238 | Msa0860620:three_prime_UTR |
GCTTCAAAGCAATCCCAGGA+AGG | 0.641603 | 5_4:-59453362 | None:intergenic |
AGCTAATGTTTACCTGATGA+CGG | 0.643360 | 5_4:-59454030 | None:intergenic |
GAGTTAGATATTGATCAGGA+TGG | 0.644477 | 5_4:-59451211 | None:intergenic |
AGAGCCCCGTGACATATACT+GGG | 0.645760 | 5_4:+59452455 | Msa0860620:CDS |
CATAACATCGACCATCCTTG+TGG | 0.648397 | 5_4:-59455249 | None:intergenic |
TTAAGGTCCAGTCCACTGCA+AGG | 0.657871 | 5_4:+59449400 | Msa0860620:CDS |
GTGATGTGATGAGTCAAGAG+TGG | 0.660535 | 5_4:+59454780 | Msa0860620:CDS |
GTGCCTAGCAAACATAGTGG+TGG | 0.668424 | 5_4:+59454857 | Msa0860620:CDS |
TTAGTTCAACGCTCAAGCAG+GGG | 0.670183 | 5_4:-59448419 | None:intergenic |
AGGTCCAGTCCACTGCAAGG+AGG | 0.672026 | 5_4:+59449403 | Msa0860620:CDS |
GGAGCTTAATGACAAGTGCA+TGG | 0.674311 | 5_4:+59454975 | Msa0860620:three_prime_UTR |
AATGGACTTGAGGAATGGTG+CGG | 0.681567 | 5_4:-59452616 | None:intergenic |
TTTCCGAAATGGTATCTGAG+GGG | 0.685701 | 5_4:+59449376 | Msa0860620:CDS |
TGTCATTAGTCCAATTGACA+GGG | 0.686521 | 5_4:-59450420 | None:intergenic |
GACGGTGAAATCACTCATAG+CGG | 0.692455 | 5_4:+59455223 | Msa0860620:three_prime_UTR |
GTGTGACTACAGCATACACA+AGG | 0.702184 | 5_4:-59453955 | None:intergenic |
ATACCGTGAATTGGTCAGGA+CGG | 0.704095 | 5_4:-59450964 | None:intergenic |
AGATTGAAGTACAGACACAT+CGG | 0.713824 | 5_4:+59455296 | Msa0860620:three_prime_UTR |
TTATCCCAGTATATGTCACG+GGG | 0.723719 | 5_4:-59452459 | None:intergenic |
CCTGTGCCTAGCAAACATAG+TGG | 0.725948 | 5_4:+59454854 | Msa0860620:CDS |
AAAATGCTAGGAGTGAAATG+GGG | 0.730707 | 5_4:-59450387 | None:intergenic |
ACTGATTCATCAGCATCAGG+CGG | 0.734704 | 5_4:-59451155 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTCAATTTTAGATTT+TGG | + | chr5_4:59448632-59448651 | Msa0860620:intron | 10.0% |
!!! | TAAAATCCAATTTTTTTATT+TGG | - | chr5_4:59448690-59448709 | None:intergenic | 10.0% |
!! | AAAATAAATGTTATGAAATT+TGG | + | chr5_4:59448751-59448770 | Msa0860620:intron | 10.0% |
!! | ATAAATAATAAATCATGTAT+TGG | - | chr5_4:59449659-59449678 | None:intergenic | 10.0% |
!!! | TAAGTAATTATTTTTTTGTA+GGG | - | chr5_4:59449807-59449826 | None:intergenic | 10.0% |
!!! | ATAAGTAATTATTTTTTTGT+AGG | - | chr5_4:59449808-59449827 | None:intergenic | 10.0% |
!! | TCAACTATTATAAAAAAAAA+GGG | - | chr5_4:59450265-59450284 | None:intergenic | 10.0% |
!! | ATCAACTATTATAAAAAAAA+AGG | - | chr5_4:59450266-59450285 | None:intergenic | 10.0% |
!! | ATTATGAAAATCTTAATAAA+AGG | + | chr5_4:59452052-59452071 | Msa0860620:intron | 10.0% |
!! | TAATATAATATGATATTGTA+TGG | + | chr5_4:59453121-59453140 | Msa0860620:intron | 10.0% |
!!! | GTTTTATTTTTAAAAATTGA+CGG | + | chr5_4:59455205-59455224 | Msa0860620:three_prime_UTR | 10.0% |
!! | GTAAAACCAAATAAAAAAAT+TGG | + | chr5_4:59448681-59448700 | Msa0860620:intron | 15.0% |
!! | AAAAAAAAAAACTAGTAAAG+TGG | - | chr5_4:59449040-59449059 | None:intergenic | 15.0% |
!! | ATGATTTATTATTTATACAC+AGG | + | chr5_4:59449663-59449682 | Msa0860620:intron | 15.0% |
!! | CAAAAACTTAAAATTAAGTA+AGG | - | chr5_4:59449722-59449741 | None:intergenic | 15.0% |
!!! | CTTACTTAATTTTAAGTTTT+TGG | + | chr5_4:59449720-59449739 | Msa0860620:intron | 15.0% |
!! | AAACCTATTAAAATTAAGTA+AGG | - | chr5_4:59449778-59449797 | None:intergenic | 15.0% |
!! | TTCAAAAATTTAAGAGTTTA+AGG | - | chr5_4:59449869-59449888 | None:intergenic | 15.0% |
!! | AAACAAATTTGAATTTAGTA+AGG | + | chr5_4:59450130-59450149 | Msa0860620:intron | 15.0% |
!! | AGAATTATGAAAATTAAGTA+AGG | + | chr5_4:59450191-59450210 | Msa0860620:intron | 15.0% |
!! | CTTATTCATTTAAATAAACA+AGG | - | chr5_4:59450629-59450648 | None:intergenic | 15.0% |
!! | ATAAATCTTTATCATAGAAA+CGG | - | chr5_4:59451042-59451061 | None:intergenic | 15.0% |
!! | ATTTAACTAAAAAACCAATT+TGG | - | chr5_4:59452197-59452216 | None:intergenic | 15.0% |
!! | ATAACATTACATTTCAATAA+TGG | - | chr5_4:59452637-59452656 | None:intergenic | 15.0% |
!! | AAAGAGAAAAATGTAATAAA+AGG | - | chr5_4:59452670-59452689 | None:intergenic | 15.0% |
!!! | TATTACATTTTTCTCTTTAT+TGG | + | chr5_4:59452672-59452691 | Msa0860620:intron | 15.0% |
!!! | CTGAATTTTCTATTTATTTA+AGG | - | chr5_4:59453011-59453030 | None:intergenic | 15.0% |
!! | CTTAAATAAATAGAAAATTC+AGG | + | chr5_4:59453009-59453028 | Msa0860620:intron | 15.0% |
!! | TTTAAGTGATAAAATATCAA+AGG | - | chr5_4:59453827-59453846 | None:intergenic | 15.0% |
!!! | TTTTGAAGTGAATTATAGTT+TGG | + | chr5_4:59448885-59448904 | Msa0860620:intron | 20.0% |
!! | GAAGAATTGTATGAAATATA+TGG | + | chr5_4:59448970-59448989 | Msa0860620:intron | 20.0% |
!! | TCACTGTTTATATCATTTAT+TGG | + | chr5_4:59449153-59449172 | Msa0860620:intron | 20.0% |
!! | TTGGAAGATTAGAAATTAAA+CGG | + | chr5_4:59449172-59449191 | Msa0860620:intron | 20.0% |
!!! | AGTCCTTACTTAATTTTAAT+AGG | + | chr5_4:59449772-59449791 | Msa0860620:intron | 20.0% |
!!! | TTTAAAACGACAAAAGTTAA+AGG | + | chr5_4:59449980-59449999 | Msa0860620:intron | 20.0% |
!!! | AAAAGGGTTAAATATGTTTT+TGG | - | chr5_4:59450249-59450268 | None:intergenic | 20.0% |
!! | AAACAAATTAATACATCTTC+TGG | + | chr5_4:59450728-59450747 | Msa0860620:intron | 20.0% |
!! | GAAAAGCTTAACAAATATTT+CGG | - | chr5_4:59450784-59450803 | None:intergenic | 20.0% |
!! | AAAATATCACTTAAGAGTAA+GGG | - | chr5_4:59451618-59451637 | None:intergenic | 20.0% |
!! | AAAAATATCACTTAAGAGTA+AGG | - | chr5_4:59451619-59451638 | None:intergenic | 20.0% |
!!! | ATAGAATACCTTTAAAAAGA+TGG | - | chr5_4:59451825-59451844 | None:intergenic | 20.0% |
!! | TTATAGTAACTTGATACAAA+AGG | + | chr5_4:59452944-59452963 | Msa0860620:intron | 20.0% |
!! | ATAATCTTACATTATCTCTT+AGG | - | chr5_4:59453071-59453090 | None:intergenic | 20.0% |
!! | TTTCTTCATAACATACATAA+TGG | + | chr5_4:59453757-59453776 | Msa0860620:CDS | 20.0% |
!! | GAAAAAAAAAATACCTGTAA+TGG | - | chr5_4:59454484-59454503 | None:intergenic | 20.0% |
!!! | TAAACAGAAAGCAATATTTT+AGG | + | chr5_4:59454568-59454587 | Msa0860620:intron | 20.0% |
!!! | AAACAGAAAGCAATATTTTA+GGG | + | chr5_4:59454569-59454588 | Msa0860620:intron | 20.0% |
!!! | GAGTTAATTTTCTTTTTTTG+TGG | + | chr5_4:59454629-59454648 | Msa0860620:intron | 20.0% |
!! | AAATCTTTCAAATTGAAGTT+TGG | - | chr5_4:59454707-59454726 | None:intergenic | 20.0% |
!! | TCTATATACAAAAGAAAATC+TGG | - | chr5_4:59455076-59455095 | None:intergenic | 20.0% |
!!! | TATGAAAAGCAAGAAAATTT+TGG | + | chr5_4:59455096-59455115 | Msa0860620:three_prime_UTR | 20.0% |
!!! | ATGAAAAGCAAGAAAATTTT+GGG | + | chr5_4:59455097-59455116 | Msa0860620:three_prime_UTR | 20.0% |
!! | TTCTCAGAAATTCACAATTT+TGG | + | chr5_4:59448543-59448562 | Msa0860620:five_prime_UTR | 25.0% |
!! | TTCATCATTGATTGTTAAGA+TGG | + | chr5_4:59448718-59448737 | Msa0860620:intron | 25.0% |
!!! | ATTGTGATTTTAGTTCACAA+AGG | + | chr5_4:59448807-59448826 | Msa0860620:intron | 25.0% |
!!! | TTGTGATTTTAGTTCACAAA+GGG | + | chr5_4:59448808-59448827 | Msa0860620:intron | 25.0% |
! | GAATTGTATGAAATATATGG+TGG | + | chr5_4:59448973-59448992 | Msa0860620:intron | 25.0% |
! | AAAAAAACTAGTAAAGTGGT+GGG | - | chr5_4:59449036-59449055 | None:intergenic | 25.0% |
! | AAAAAAAACTAGTAAAGTGG+TGG | - | chr5_4:59449037-59449056 | None:intergenic | 25.0% |
! | TGATAGTAAATCAAAGAACA+TGG | + | chr5_4:59449243-59449262 | Msa0860620:exon | 25.0% |
! | AATTTGTCAATATAGACTTC+AGG | + | chr5_4:59449440-59449459 | Msa0860620:CDS | 25.0% |
!!! | TAAAGTTTGTAGTTCTGAAT+CGG | + | chr5_4:59449603-59449622 | Msa0860620:intron | 25.0% |
!! | TTAGAAGTTCCCAATTTTAT+GGG | - | chr5_4:59449748-59449767 | None:intergenic | 25.0% |
!!! | AAACAAACTTTGTTTTAGCA+GGG | - | chr5_4:59449840-59449859 | None:intergenic | 25.0% |
!!! | TAAACAAACTTTGTTTTAGC+AGG | - | chr5_4:59449841-59449860 | None:intergenic | 25.0% |
!!! | AATCTTGCGATAATTTTTTG+TGG | + | chr5_4:59450034-59450053 | Msa0860620:intron | 25.0% |
!!! | TGAGTGCATAAATTTTTTGT+AGG | + | chr5_4:59450161-59450180 | Msa0860620:intron | 25.0% |
!!! | GAGTGCATAAATTTTTTGTA+GGG | + | chr5_4:59450162-59450181 | Msa0860620:intron | 25.0% |
!!! | TTTTTGGTCCCTATAAAATT+GGG | - | chr5_4:59450233-59450252 | None:intergenic | 25.0% |
! | ATCTTATTCAATTGAATTGC+AGG | + | chr5_4:59450350-59450369 | Msa0860620:intron | 25.0% |
! | TCAATTTCAAATATTCCACT+AGG | + | chr5_4:59450487-59450506 | Msa0860620:CDS | 25.0% |
! | CTAAAATGATAGACTATAGA+TGG | - | chr5_4:59450577-59450596 | None:intergenic | 25.0% |
!! | ATAGAATTGTTTAGAGTTAG+AGG | - | chr5_4:59450687-59450706 | None:intergenic | 25.0% |
!! | TTAATACATCTTCTGGTTAT+TGG | + | chr5_4:59450735-59450754 | Msa0860620:intron | 25.0% |
! | CTTAACAAATATTTCGGTTA+GGG | - | chr5_4:59450778-59450797 | None:intergenic | 25.0% |
!! | TCATTACTTATTGCAGATTT+TGG | + | chr5_4:59450831-59450850 | Msa0860620:intron | 25.0% |
!! | TATGAATTTGAAGTCATAAC+AGG | - | chr5_4:59451367-59451386 | None:intergenic | 25.0% |
! | GAGAATTATATCTTGTTAAC+TGG | + | chr5_4:59451460-59451479 | Msa0860620:intron | 25.0% |
! | AGAAGAAGAAAAAACAGAAT+TGG | + | chr5_4:59451683-59451702 | Msa0860620:CDS | 25.0% |
!! | AGATTTTCATAATACAAGTG+TGG | - | chr5_4:59452045-59452064 | None:intergenic | 25.0% |
! | AAACTAGAAATCCAACAATA+TGG | + | chr5_4:59452415-59452434 | Msa0860620:CDS | 25.0% |
!! | ATCATCAAGTCTTTTATACA+AGG | + | chr5_4:59453336-59453355 | Msa0860620:CDS | 25.0% |
! | ATATTGTTGGCAAAAAAATG+AGG | - | chr5_4:59453392-59453411 | None:intergenic | 25.0% |
! | GAATGAATTTATCTAGTTGT+TGG | - | chr5_4:59453542-59453561 | None:intergenic | 25.0% |
! | ACAGTCATATATATATGCAT+AGG | - | chr5_4:59453593-59453612 | None:intergenic | 25.0% |
! | ATAACATACATAATGGTTGA+TGG | + | chr5_4:59453764-59453783 | Msa0860620:CDS | 25.0% |
! | TCACTTAAAGAATTTCTTGT+TGG | + | chr5_4:59453838-59453857 | Msa0860620:CDS | 25.0% |
! | AAGAAATAAAGTTGTATCTG+AGG | - | chr5_4:59453929-59453948 | None:intergenic | 25.0% |
!! | ATACAACTTTATTTCTTGCT+TGG | + | chr5_4:59453932-59453951 | Msa0860620:CDS | 25.0% |
!!! | TCGATTTTAATATATGCTCA+TGG | - | chr5_4:59454176-59454195 | None:intergenic | 25.0% |
! | TACATGCACTAAAATACTTA+AGG | - | chr5_4:59454202-59454221 | None:intergenic | 25.0% |
!! | TTTTGACAATATGGTTTCAT+CGG | + | chr5_4:59454419-59454438 | Msa0860620:CDS | 25.0% |
!!! | AACAGAAAGCAATATTTTAG+GGG | + | chr5_4:59454570-59454589 | Msa0860620:intron | 25.0% |
! | TAAATCTATAGACAGATTGA+AGG | + | chr5_4:59455009-59455028 | Msa0860620:three_prime_UTR | 25.0% |
!! | TGTAATGAGTTTTTACTCTA+TGG | + | chr5_4:59455153-59455172 | Msa0860620:three_prime_UTR | 25.0% |
! | CACTCTCATTATCACATTTT+TGG | + | chr5_4:59448460-59448479 | Msa0860620:five_prime_UTR | 30.0% |
GAAACAGAAAAAGAAGAGAA+TGG | - | chr5_4:59448505-59448524 | None:intergenic | 30.0% | |
!!! | GTTATGCATGTTTTTTTGTG+TGG | + | chr5_4:59448654-59448673 | Msa0860620:intron | 30.0% |
AAAAAACTAGTAAAGTGGTG+GGG | - | chr5_4:59449035-59449054 | None:intergenic | 30.0% | |
! | AGAAGAGTTGTATATTTTGC+AGG | + | chr5_4:59449209-59449228 | Msa0860620:intron | 30.0% |
! | GAAGAGTTGTATATTTTGCA+GGG | + | chr5_4:59449210-59449229 | Msa0860620:intron | 30.0% |
GATTCAACCTATAAACGATA+GGG | + | chr5_4:59449348-59449367 | Msa0860620:CDS | 30.0% | |
AAATACACCCTATCGTTTAT+AGG | - | chr5_4:59449358-59449377 | None:intergenic | 30.0% | |
TTCAGAACTACAAACTTTAG+AGG | - | chr5_4:59449602-59449621 | None:intergenic | 30.0% | |
ATTGGTTAAAATCTACTCTC+TGG | - | chr5_4:59449641-59449660 | None:intergenic | 30.0% | |
!! | TTTTTGGTCCCCATAAAATT+GGG | + | chr5_4:59449736-59449755 | Msa0860620:intron | 30.0% |
! | TAGAAGTTCCCAATTTTATG+GGG | - | chr5_4:59449747-59449766 | None:intergenic | 30.0% |
! | CTTAGAAGTTCCCAATTTTA+TGG | - | chr5_4:59449749-59449768 | None:intergenic | 30.0% |
CATGTTTACAACACTATGAA+AGG | + | chr5_4:59449903-59449922 | Msa0860620:intron | 30.0% | |
AAGGTAAACGTAACAAAATC+TGG | + | chr5_4:59449999-59450018 | Msa0860620:intron | 30.0% | |
AAGTAAGGACTAAACTTAGA+AGG | + | chr5_4:59450206-59450225 | Msa0860620:intron | 30.0% | |
! | TTAGAAGGTCCCAATTTTAT+AGG | + | chr5_4:59450221-59450240 | Msa0860620:intron | 30.0% |
! | TAGAAGGTCCCAATTTTATA+GGG | + | chr5_4:59450222-59450241 | Msa0860620:intron | 30.0% |
!!! | GTTTTTGGTCCCTATAAAAT+TGG | - | chr5_4:59450234-59450253 | None:intergenic | 30.0% |
TCTTGAAACTAGAAAAACGT+AGG | - | chr5_4:59450293-59450312 | None:intergenic | 30.0% | |
ATATTCCACTAGGATCAAAT+AGG | + | chr5_4:59450497-59450516 | Msa0860620:CDS | 30.0% | |
! | AAGAAGGTGCAAAAAAAGAA+TGG | - | chr5_4:59450552-59450571 | None:intergenic | 30.0% |
GCTTAACAAATATTTCGGTT+AGG | - | chr5_4:59450779-59450798 | None:intergenic | 30.0% | |
TGCAATAAGTAATGAGTTAC+TGG | - | chr5_4:59450826-59450845 | None:intergenic | 30.0% | |
GACATGCTATATCTTGAAAA+GGG | + | chr5_4:59450889-59450908 | Msa0860620:CDS | 30.0% | |
! | GCTAGTTGAACATTTCTTTT+TGG | + | chr5_4:59451184-59451203 | Msa0860620:CDS | 30.0% |
TGATGAGTTAGATATTGATC+AGG | - | chr5_4:59451218-59451237 | None:intergenic | 30.0% | |
TGATCAATATCTAACTCATC+AGG | + | chr5_4:59451217-59451236 | Msa0860620:CDS | 30.0% | |
! | TAATGTTTTCCGATACCTTT+GGG | + | chr5_4:59451503-59451522 | Msa0860620:intron | 30.0% |
!! | TGAATTTTACCCAAAGGTAT+CGG | - | chr5_4:59451515-59451534 | None:intergenic | 30.0% |
! | TTGCATTGAATTTTACCCAA+AGG | - | chr5_4:59451521-59451540 | None:intergenic | 30.0% |
TCAATGCAAAATAACGATTC+TGG | + | chr5_4:59451532-59451551 | Msa0860620:intron | 30.0% | |
CAATGCAAAATAACGATTCT+GGG | + | chr5_4:59451533-59451552 | Msa0860620:intron | 30.0% | |
!! | ATTCTGGGATGAATTCTTAT+TGG | + | chr5_4:59451548-59451567 | Msa0860620:intron | 30.0% |
GAAAACACAATGAAACAACT+TGG | - | chr5_4:59451596-59451615 | None:intergenic | 30.0% | |
!! | CTCTTAAGTGATATTTTTGC+AGG | + | chr5_4:59451621-59451640 | Msa0860620:intron | 30.0% |
! | ATTCTAGAAACGAATCCATA+AGG | + | chr5_4:59451728-59451747 | Msa0860620:CDS | 30.0% |
!! | AGATGACATACCTTTTTAGT+TGG | - | chr5_4:59451754-59451773 | None:intergenic | 30.0% |
AACAGATTTGGAAGATGATT+TGG | - | chr5_4:59451801-59451820 | None:intergenic | 30.0% | |
TAAAAAGATGGCAACAGATT+TGG | - | chr5_4:59451813-59451832 | None:intergenic | 30.0% | |
! | ATCTGTTGCCATCTTTTTAA+AGG | + | chr5_4:59451814-59451833 | Msa0860620:intron | 30.0% |
AAGCAAAGGTTACAAATATG+AGG | - | chr5_4:59452147-59452166 | None:intergenic | 30.0% | |
GCAATGATGAAAATAAGCAA+AGG | - | chr5_4:59452161-59452180 | None:intergenic | 30.0% | |
AACAATATGGTTGACTGAAT+GGG | + | chr5_4:59452428-59452447 | Msa0860620:CDS | 30.0% | |
CTTATTGAGAGAGAAACATA+TGG | - | chr5_4:59452495-59452514 | None:intergenic | 30.0% | |
CATATGTTTCTCTCTCAATA+AGG | + | chr5_4:59452493-59452512 | Msa0860620:CDS | 30.0% | |
TCAATAAGGAGACTTGTAAT+TGG | + | chr5_4:59452507-59452526 | Msa0860620:CDS | 30.0% | |
!! | ACATTTCAATAATGGACTTG+AGG | - | chr5_4:59452629-59452648 | None:intergenic | 30.0% |
AAATACTAATCCCTATGTGT+AGG | + | chr5_4:59452969-59452988 | Msa0860620:intron | 30.0% | |
TATCTAGTCTGATTACATCA+CGG | + | chr5_4:59453177-59453196 | Msa0860620:intron | 30.0% | |
CATAACATTAACATCTACCA+TGG | - | chr5_4:59453295-59453314 | None:intergenic | 30.0% | |
GACATGATCATCAATATTGT+TGG | - | chr5_4:59453405-59453424 | None:intergenic | 30.0% | |
CAGTTCATTAATGTGTTTCT+GGG | + | chr5_4:59453492-59453511 | Msa0860620:CDS | 30.0% | |
! | AGTTCATTAATGTGTTTCTG+GGG | + | chr5_4:59453493-59453512 | Msa0860620:CDS | 30.0% |
GTCATATATATATGCATAGG+AGG | - | chr5_4:59453590-59453609 | None:intergenic | 30.0% | |
! | ATGAAGAAAGTTGCTTTCAT+TGG | - | chr5_4:59453746-59453765 | None:intergenic | 30.0% |
!! | ATACATAATGGTTGATGGAT+GGG | + | chr5_4:59453769-59453788 | Msa0860620:CDS | 30.0% |
ATGATGTATGGAAGTAGAAA+TGG | - | chr5_4:59453980-59453999 | None:intergenic | 30.0% | |
CCAAAAAAGACAATGATGTA+TGG | - | chr5_4:59453992-59454011 | None:intergenic | 30.0% | |
!!! | CCATACATCATTGTCTTTTT+TGG | + | chr5_4:59453989-59454008 | Msa0860620:CDS | 30.0% |
!!! | CATCATTGTCTTTTTTGGTT+TGG | + | chr5_4:59453994-59454013 | Msa0860620:CDS | 30.0% |
! | TATTAATGTCTGAAACTGAC+TGG | + | chr5_4:59454230-59454249 | Msa0860620:intron | 30.0% |
GAAACCATATTGTCAAAACT+GGG | - | chr5_4:59454417-59454436 | None:intergenic | 30.0% | |
TGAAACCATATTGTCAAAAC+TGG | - | chr5_4:59454418-59454437 | None:intergenic | 30.0% | |
! | TTTTACTACTCATCCATTAC+AGG | + | chr5_4:59454468-59454487 | Msa0860620:CDS | 30.0% |
! | AGAAGCATGTTCAAAACATA+GGG | - | chr5_4:59454599-59454618 | None:intergenic | 30.0% |
! | AAGAAGCATGTTCAAAACAT+AGG | - | chr5_4:59454600-59454619 | None:intergenic | 30.0% |
TTGACTTCAACTCAAATCTA+AGG | - | chr5_4:59454939-59454958 | None:intergenic | 30.0% | |
!! | TTAGATTTGAGTTGAAGTCA+AGG | + | chr5_4:59454938-59454957 | Msa0860620:three_prime_UTR | 30.0% |
!!! | CACAATTTTGGTGCTACATA+AGG | + | chr5_4:59448555-59448574 | Msa0860620:five_prime_UTR | 35.0% |
GGTAATGCACTCTTATGTAA+TGG | + | chr5_4:59448576-59448595 | Msa0860620:intron | 35.0% | |
! | TCATTGATTGTTAAGATGGC+TGG | + | chr5_4:59448722-59448741 | Msa0860620:intron | 35.0% |
TGAGCTAGATGATGTGAAAA+GGG | + | chr5_4:59448919-59448938 | Msa0860620:intron | 35.0% | |
AGACAGTGACATAAAGAACA+TGG | - | chr5_4:59449069-59449088 | None:intergenic | 35.0% | |
! | TTGTATATTTTGCAGGGAGT+AGG | + | chr5_4:59449216-59449235 | Msa0860620:intron | 35.0% |
GTAAGAATGCAAATGCAGTA+AGG | - | chr5_4:59449309-59449328 | None:intergenic | 35.0% | |
TACTGCATTTGCATTCTTAC+TGG | + | chr5_4:59449309-59449328 | Msa0860620:CDS | 35.0% | |
! | TATAGGTTGAATCCGAAGTA+TGG | - | chr5_4:59449341-59449360 | None:intergenic | 35.0% |
GGATTCAACCTATAAACGAT+AGG | + | chr5_4:59449347-59449366 | Msa0860620:CDS | 35.0% | |
! | ATAGGGTGTATTTTCCGAAA+TGG | + | chr5_4:59449365-59449384 | Msa0860620:CDS | 35.0% |
! | ATTTTCCGAAATGGTATCTG+AGG | + | chr5_4:59449374-59449393 | Msa0860620:CDS | 35.0% |
! | TTTTCCGAAATGGTATCTGA+GGG | + | chr5_4:59449375-59449394 | Msa0860620:CDS | 35.0% |
TAGACTTCAGGTCATACATA+AGG | + | chr5_4:59449452-59449471 | Msa0860620:CDS | 35.0% | |
CATACATAAGGTTCTTGAAC+TGG | + | chr5_4:59449464-59449483 | Msa0860620:CDS | 35.0% | |
TACTTGAGGATCTACTTACT+CGG | + | chr5_4:59449553-59449572 | Msa0860620:CDS | 35.0% | |
!!! | GTTTTTGGTCCCCATAAAAT+TGG | + | chr5_4:59449735-59449754 | Msa0860620:intron | 35.0% |
AAAATGCTAGGAGTGAAATG+GGG | - | chr5_4:59450390-59450409 | None:intergenic | 35.0% | |
GAAAATGCTAGGAGTGAAAT+GGG | - | chr5_4:59450391-59450410 | None:intergenic | 35.0% | |
AGAAAATGCTAGGAGTGAAA+TGG | - | chr5_4:59450392-59450411 | None:intergenic | 35.0% | |
! | ACTCCTAGCATTTTCTGTTA+TGG | + | chr5_4:59450396-59450415 | Msa0860620:CDS | 35.0% |
TGTCATTAGTCCAATTGACA+GGG | - | chr5_4:59450423-59450442 | None:intergenic | 35.0% | |
AACCACATTTGAACGTTTCA+AGG | - | chr5_4:59450446-59450465 | None:intergenic | 35.0% | |
TAGACTATAGATGGCAAAGA+AGG | - | chr5_4:59450568-59450587 | None:intergenic | 35.0% | |
!!! | TTCTGGTTATTGGTTTTACG+AGG | + | chr5_4:59450745-59450764 | Msa0860620:intron | 35.0% |
! | ATTTTGGACTCACTTGGTAA+TGG | + | chr5_4:59450847-59450866 | Msa0860620:CDS | 35.0% |
GGACATGCTATATCTTGAAA+AGG | + | chr5_4:59450888-59450907 | Msa0860620:CDS | 35.0% | |
AACTTGATCATACCGTGAAT+TGG | - | chr5_4:59450976-59450995 | None:intergenic | 35.0% | |
GAGTTAGATATTGATCAGGA+TGG | - | chr5_4:59451214-59451233 | None:intergenic | 35.0% | |
TATGTGCAGTTACAGAAAAC+AGG | - | chr5_4:59451249-59451268 | None:intergenic | 35.0% | |
! | GTAATGTTTTCCGATACCTT+TGG | + | chr5_4:59451502-59451521 | Msa0860620:intron | 35.0% |
ACACAATGAAACAACTTGGT+AGG | - | chr5_4:59451592-59451611 | None:intergenic | 35.0% | |
ATCCATAAGGCCAACTAAAA+AGG | + | chr5_4:59451741-59451760 | Msa0860620:CDS | 35.0% | |
!!! | TACCTTTTTAGTTGGCCTTA+TGG | - | chr5_4:59451746-59451765 | None:intergenic | 35.0% |
TGTGACCAACTAGAATTACA+TGG | - | chr5_4:59451869-59451888 | None:intergenic | 35.0% | |
CGTTAAATTTCAGATAGAGC+TGG | + | chr5_4:59452293-59452312 | Msa0860620:intron | 35.0% | |
!!! | ACGAGTTTTGAAGGAAACAA+AGG | - | chr5_4:59452364-59452383 | None:intergenic | 35.0% |
TTGTTTCCTTCAAAACTCGT+TGG | + | chr5_4:59452364-59452383 | Msa0860620:CDS | 35.0% | |
TGTTTCCTTCAAAACTCGTT+GGG | + | chr5_4:59452365-59452384 | Msa0860620:CDS | 35.0% | |
CATTCAGTCAACCATATTGT+TGG | - | chr5_4:59452429-59452448 | None:intergenic | 35.0% | |
CAACAATATGGTTGACTGAA+TGG | + | chr5_4:59452427-59452446 | Msa0860620:CDS | 35.0% | |
TGTTATCCCAGTATATGTCA+CGG | - | chr5_4:59452464-59452483 | None:intergenic | 35.0% | |
TGACATATACTGGGATAACA+TGG | + | chr5_4:59452464-59452483 | Msa0860620:CDS | 35.0% | |
! | CAGTCACTTGCTAATATAGA+AGG | + | chr5_4:59452582-59452601 | Msa0860620:CDS | 35.0% |
!! | TCAATAATGGACTTGAGGAA+TGG | - | chr5_4:59452624-59452643 | None:intergenic | 35.0% |
TCAATGTAGTCCTACACATA+GGG | - | chr5_4:59452982-59453001 | None:intergenic | 35.0% | |
TGGAAGTTTATGTCTTTCAC+TGG | + | chr5_4:59453207-59453226 | Msa0860620:intron | 35.0% | |
! | CTTTGATAACTGTCTATCCA+TGG | + | chr5_4:59453275-59453294 | Msa0860620:intron | 35.0% |
TTTATACAAGGTTTCCTTCC+TGG | + | chr5_4:59453348-59453367 | Msa0860620:CDS | 35.0% | |
TTATACAAGGTTTCCTTCCT+GGG | + | chr5_4:59453349-59453368 | Msa0860620:CDS | 35.0% | |
ACTTATAAACCCTTCGAACT+TGG | - | chr5_4:59453427-59453446 | None:intergenic | 35.0% | |
GTTTATAAGTCAGTCTTCTC+TGG | + | chr5_4:59453437-59453456 | Msa0860620:CDS | 35.0% | |
CTGGAAGATGTAATATCTTG+AGG | - | chr5_4:59453475-59453494 | None:intergenic | 35.0% | |
CCAGAAACACATTAATGAAC+TGG | - | chr5_4:59453494-59453513 | None:intergenic | 35.0% | |
CCAGTTCATTAATGTGTTTC+TGG | + | chr5_4:59453491-59453510 | Msa0860620:CDS | 35.0% | |
TGCAGAATTCCAAAGACAAT+TGG | + | chr5_4:59453710-59453729 | Msa0860620:intron | 35.0% | |
ATCGAAACACCAATTGTCTT+TGG | - | chr5_4:59453722-59453741 | None:intergenic | 35.0% | |
!! | CATACATAATGGTTGATGGA+TGG | + | chr5_4:59453768-59453787 | Msa0860620:CDS | 35.0% |
AGCTAATGTTTACCTGATGA+CGG | - | chr5_4:59454033-59454052 | None:intergenic | 35.0% | |
!! | GAAAAGCATCAAAACAGCAA+AGG | - | chr5_4:59454063-59454082 | None:intergenic | 35.0% |
! | CAACATAGCACTCATTTTCA+TGG | - | chr5_4:59454115-59454134 | None:intergenic | 35.0% |
ATGTTGTGTGTGTACAACTT+TGG | + | chr5_4:59454129-59454148 | Msa0860620:intron | 35.0% | |
ATGCAAATACAATACGTCCA+TGG | - | chr5_4:59454315-59454334 | None:intergenic | 35.0% | |
TGTCTCACAACTTCTGTTAA+TGG | + | chr5_4:59454339-59454358 | Msa0860620:CDS | 35.0% | |
GTCTCACAACTTCTGTTAAT+GGG | + | chr5_4:59454340-59454359 | Msa0860620:CDS | 35.0% | |
AATGGATGAGTAGTAAAAGC+AGG | - | chr5_4:59454466-59454485 | None:intergenic | 35.0% | |
GATGGATATATGCATCATAG+AGG | - | chr5_4:59454730-59454749 | None:intergenic | 35.0% | |
! | TCTCCATCATCTTTGAAAAC+GGG | - | chr5_4:59454752-59454771 | None:intergenic | 35.0% |
! | GTCTCCATCATCTTTGAAAA+CGG | - | chr5_4:59454753-59454772 | None:intergenic | 35.0% |
!!! | CGTTTTGTTTGGACAATTAC+CGG | - | chr5_4:59454815-59454834 | None:intergenic | 35.0% |
TCTATAGACAGATTGAAGGT+TGG | + | chr5_4:59455013-59455032 | Msa0860620:three_prime_UTR | 35.0% | |
GACAGATAAGAGCAATATTC+AGG | + | chr5_4:59455124-59455143 | Msa0860620:three_prime_UTR | 35.0% | |
TCTGCTCATTCTCAAGATTT+CGG | - | chr5_4:59455279-59455298 | None:intergenic | 35.0% | |
AGATTGAAGTACAGACACAT+CGG | + | chr5_4:59455296-59455315 | Msa0860620:three_prime_UTR | 35.0% | |
CACAAAGGGTTGTTGCAAAT+TGG | + | chr5_4:59448822-59448841 | Msa0860620:intron | 40.0% | |
CTGAGCTAGATGATGTGAAA+AGG | + | chr5_4:59448918-59448937 | Msa0860620:intron | 40.0% | |
TCAAAGAACATGGCTTCACT+TGG | + | chr5_4:59449253-59449272 | Msa0860620:exon | 40.0% | |
TACTGGCATTTGCCATACTT+CGG | + | chr5_4:59449326-59449345 | Msa0860620:CDS | 40.0% | |
TTTCCGAAATGGTATCTGAG+GGG | + | chr5_4:59449376-59449395 | Msa0860620:CDS | 40.0% | |
AAACCCCTCAGATACCATTT+CGG | - | chr5_4:59449382-59449401 | None:intergenic | 40.0% | |
AATGGTATCTGAGGGGTTTA+AGG | + | chr5_4:59449383-59449402 | Msa0860620:CDS | 40.0% | |
! | TGTTCAATTAGTTCGGGTTC+CGG | - | chr5_4:59449511-59449530 | None:intergenic | 40.0% |
CCTGCATGTTCAATTAGTTC+GGG | - | chr5_4:59449517-59449536 | None:intergenic | 40.0% | |
GCCTGCATGTTCAATTAGTT+CGG | - | chr5_4:59449518-59449537 | None:intergenic | 40.0% | |
ACTAATTGAACATGCAGGCT+TGG | + | chr5_4:59449519-59449538 | Msa0860620:CDS | 40.0% | |
TGGATTCTGCTGTATACTTG+AGG | + | chr5_4:59449539-59449558 | Msa0860620:CDS | 40.0% | |
ACTTGAGGATCTACTTACTC+GGG | + | chr5_4:59449554-59449573 | Msa0860620:CDS | 40.0% | |
GGACCATAACAGAAAATGCT+AGG | - | chr5_4:59450402-59450421 | None:intergenic | 40.0% | |
! | GTGTCATTAGTCCAATTGAC+AGG | - | chr5_4:59450424-59450443 | None:intergenic | 40.0% |
CACCTTGAAACGTTCAAATG+TGG | + | chr5_4:59450441-59450460 | Msa0860620:CDS | 40.0% | |
ACGTACCTATTTGATCCTAG+TGG | - | chr5_4:59450505-59450524 | None:intergenic | 40.0% | |
! | TTGCAGATTTTGGACTCACT+TGG | + | chr5_4:59450841-59450860 | Msa0860620:intron | 40.0% |
! | TGGCTTATGCTTTTACCTTC+TGG | + | chr5_4:59450867-59450886 | Msa0860620:CDS | 40.0% |
CAAGATATAGCATGTCCAGA+AGG | - | chr5_4:59450885-59450904 | None:intergenic | 40.0% | |
! | ATTGCTTGAAGAAGGAGCAT+GGG | - | chr5_4:59451099-59451118 | None:intergenic | 40.0% |
AATTGCTTGAAGAAGGAGCA+TGG | - | chr5_4:59451100-59451119 | None:intergenic | 40.0% | |
GCACAGTAATTGCTTGAAGA+AGG | - | chr5_4:59451107-59451126 | None:intergenic | 40.0% | |
CAATTACTGTGCATTTGTGC+AGG | + | chr5_4:59451115-59451134 | Msa0860620:intron | 40.0% | |
CATTTGTGCAGGTACTTGTT+AGG | + | chr5_4:59451126-59451145 | Msa0860620:intron | 40.0% | |
GTTCATAGAGACAGGATTAC+TGG | - | chr5_4:59451777-59451796 | None:intergenic | 40.0% | |
! | GATTTGGAGTTCATAGAGAC+AGG | - | chr5_4:59451785-59451804 | None:intergenic | 40.0% |
! | TAGAATTACATGGTGCCAGA+GGG | - | chr5_4:59451859-59451878 | None:intergenic | 40.0% |
TGGCACCATGTAATTCTAGT+TGG | + | chr5_4:59451861-59451880 | Msa0860620:intron | 40.0% | |
!!! | ACTGGCTTTTTAGGTCTTTG+TGG | + | chr5_4:59451901-59451920 | Msa0860620:CDS | 40.0% |
GATAGAGCTGGAGAAAGATA+AGG | + | chr5_4:59452305-59452324 | Msa0860620:intron | 40.0% | |
GTTTCCTTCAAAACTCGTTG+GGG | + | chr5_4:59452366-59452385 | Msa0860620:CDS | 40.0% | |
TTATCCCAGTATATGTCACG+GGG | - | chr5_4:59452462-59452481 | None:intergenic | 40.0% | |
GTTATCCCAGTATATGTCAC+GGG | - | chr5_4:59452463-59452482 | None:intergenic | 40.0% | |
AGTGACTGTACGAATGCAAT+GGG | - | chr5_4:59452570-59452589 | None:intergenic | 40.0% | |
AAGTGACTGTACGAATGCAA+TGG | - | chr5_4:59452571-59452590 | None:intergenic | 40.0% | |
AATAGCTTGAACAACCCATC+TGG | + | chr5_4:59452772-59452791 | Msa0860620:intron | 40.0% | |
ATAGCTTGAACAACCCATCT+GGG | + | chr5_4:59452773-59452792 | Msa0860620:intron | 40.0% | |
GTCAATGTAGTCCTACACAT+AGG | - | chr5_4:59452983-59453002 | None:intergenic | 40.0% | |
GATTACATCACGGAATATGC+TGG | + | chr5_4:59453187-59453206 | Msa0860620:intron | 40.0% | |
AATAGCTTCAAAGCAATCCC+AGG | - | chr5_4:59453369-59453388 | None:intergenic | 40.0% | |
ATGATCATGTCCAAGTTCGA+AGG | + | chr5_4:59453414-59453433 | Msa0860620:CDS | 40.0% | |
TGATCATGTCCAAGTTCGAA+GGG | + | chr5_4:59453415-59453434 | Msa0860620:CDS | 40.0% | |
! | TTTCTGGGGAGCATAATTAC+CGG | + | chr5_4:59453507-59453526 | Msa0860620:CDS | 40.0% |
!! | GATGTGCTGGTGAGATTTTA+AGG | + | chr5_4:59453795-59453814 | Msa0860620:CDS | 40.0% |
AAAAGACCGTGAAGAAGCAA+TGG | + | chr5_4:59453871-59453890 | Msa0860620:CDS | 40.0% | |
GTATTGAAACCAATAGTCCC+AGG | - | chr5_4:59453899-59453918 | None:intergenic | 40.0% | |
!! | GGGACTATTGGTTTCAATAC+AGG | + | chr5_4:59453899-59453918 | Msa0860620:CDS | 40.0% |
ATATCTTGTCTACCGTCATC+AGG | + | chr5_4:59454018-59454037 | Msa0860620:CDS | 40.0% | |
! | AACCAAGAATATGAGAGTGC+TGG | + | chr5_4:59454271-59454290 | Msa0860620:CDS | 40.0% |
!! | CTCTCCCAGTTTTGACAATA+TGG | + | chr5_4:59454410-59454429 | Msa0860620:CDS | 40.0% |
!!! | ATGGTTTCATCGGTTTTGCA+AGG | + | chr5_4:59454429-59454448 | Msa0860620:CDS | 40.0% |
!!! | TGGTTTCATCGGTTTTGCAA+GGG | + | chr5_4:59454430-59454449 | Msa0860620:CDS | 40.0% |
! | TTTTTGTGGTGCGTGAACTT+AGG | + | chr5_4:59454643-59454662 | Msa0860620:intron | 40.0% |
AGCAATGGTCAAAGACACAT+TGG | + | chr5_4:59454667-59454686 | Msa0860620:CDS | 40.0% | |
! | CATCATCTTTGAAAACGGGA+TGG | - | chr5_4:59454748-59454767 | None:intergenic | 40.0% |
! | CATCCCGTTTTCAAAGATGA+TGG | + | chr5_4:59454746-59454765 | Msa0860620:CDS | 40.0% |
TCATTACAAGCCTCTATGCA+TGG | + | chr5_4:59454881-59454900 | Msa0860620:CDS | 40.0% | |
ATCAGTAATGCCATGCATAG+AGG | - | chr5_4:59454894-59454913 | None:intergenic | 40.0% | |
CTTAATGACAAGTGCATGGT+TGG | + | chr5_4:59454979-59454998 | Msa0860620:three_prime_UTR | 40.0% | |
TTAGTTCAACGCTCAAGCAG+GGG | - | chr5_4:59448422-59448441 | None:intergenic | 45.0% | |
GTTAGTTCAACGCTCAAGCA+GGG | - | chr5_4:59448423-59448442 | None:intergenic | 45.0% | |
TGTTAGTTCAACGCTCAAGC+AGG | - | chr5_4:59448424-59448443 | None:intergenic | 45.0% | |
ATGGCTTCACTTGGCGATAT+AGG | + | chr5_4:59449262-59449281 | Msa0860620:CDS | 45.0% | |
CCCGAACTAATTGAACATGC+AGG | + | chr5_4:59449514-59449533 | Msa0860620:CDS | 45.0% | |
CTGTTATGGTCCCTGTCAAT+TGG | + | chr5_4:59450410-59450429 | Msa0860620:CDS | 45.0% | |
ATACCGTGAATTGGTCAGGA+CGG | - | chr5_4:59450967-59450986 | None:intergenic | 45.0% | |
GATCATACCGTGAATTGGTC+AGG | - | chr5_4:59450971-59450990 | None:intergenic | 45.0% | |
! | TTGCTTGAAGAAGGAGCATG+GGG | - | chr5_4:59451098-59451117 | None:intergenic | 45.0% |
! | ACTGATTCATCAGCATCAGG+CGG | - | chr5_4:59451158-59451177 | None:intergenic | 45.0% |
! | CTGACTGATTCATCAGCATC+AGG | - | chr5_4:59451161-59451180 | None:intergenic | 45.0% |
CCAGATGAAGAGAGGCAATT+AGG | - | chr5_4:59451272-59451291 | None:intergenic | 45.0% | |
CCTAATTGCCTCTCTTCATC+TGG | + | chr5_4:59451269-59451288 | Msa0860620:intron | 45.0% | |
TACAAGCTCCAGATGAAGAG+AGG | - | chr5_4:59451280-59451299 | None:intergenic | 45.0% | |
CTATTTCCCTTTCTTCCCTC+TGG | + | chr5_4:59451841-59451860 | Msa0860620:intron | 45.0% | |
! | CTAGAATTACATGGTGCCAG+AGG | - | chr5_4:59451860-59451879 | None:intergenic | 45.0% |
!!! | TGCTTGCAGACTGGCTTTTT+AGG | + | chr5_4:59451892-59451911 | Msa0860620:intron | 45.0% |
AGGTCTTTGTGGCAGTAAAG+TGG | + | chr5_4:59451912-59451931 | Msa0860620:CDS | 45.0% | |
CAGTGCATGCTTCTCCAAAT+TGG | + | chr5_4:59452180-59452199 | Msa0860620:intron | 45.0% | |
! | AATGGACTTGAGGAATGGTG+CGG | - | chr5_4:59452619-59452638 | None:intergenic | 45.0% |
!! | GAGGAGCAAACTCTAAGGTA+AGG | - | chr5_4:59452824-59452843 | None:intergenic | 45.0% |
CTTGAGAGGAGCAAACTCTA+AGG | - | chr5_4:59452829-59452848 | None:intergenic | 45.0% | |
! | CTTAGAGTTTGCTCCTCTCA+AGG | + | chr5_4:59452827-59452846 | Msa0860620:intron | 45.0% |
! | ATTCTCCCTGGTGCTAAGTT+TGG | + | chr5_4:59452861-59452880 | Msa0860620:intron | 45.0% |
! | TTCTGGGGAGCATAATTACC+GGG | + | chr5_4:59453508-59453527 | Msa0860620:CDS | 45.0% |
TAGTTGTTGGAATGCAGTCC+CGG | - | chr5_4:59453529-59453548 | None:intergenic | 45.0% | |
!! | ATAATGGTTGATGGATGGGC+AGG | + | chr5_4:59453773-59453792 | Msa0860620:CDS | 45.0% |
CAGGATCCATTGCTTCTTCA+CGG | - | chr5_4:59453880-59453899 | None:intergenic | 45.0% | |
GTGAAGAAGCAATGGATCCT+GGG | + | chr5_4:59453879-59453898 | Msa0860620:CDS | 45.0% | |
GTGTGACTACAGCATACACA+AGG | - | chr5_4:59453958-59453977 | None:intergenic | 45.0% | |
CTCCAGCACTCTCATATTCT+TGG | - | chr5_4:59454276-59454295 | None:intergenic | 45.0% | |
ACAATACGTCCATGGACATC+AGG | - | chr5_4:59454307-59454326 | None:intergenic | 45.0% | |
TGCGTGAACTTAGGAAGCAA+TGG | + | chr5_4:59454652-59454671 | Msa0860620:intron | 45.0% | |
GTGATGTGATGAGTCAAGAG+TGG | + | chr5_4:59454780-59454799 | Msa0860620:CDS | 45.0% | |
TGTGATGAGTCAAGAGTGGA+AGG | + | chr5_4:59454784-59454803 | Msa0860620:CDS | 45.0% | |
GTCAAGGACTAAGTTCGTGT+TGG | + | chr5_4:59454954-59454973 | Msa0860620:three_prime_UTR | 45.0% | |
GGAGCTTAATGACAAGTGCA+TGG | + | chr5_4:59454975-59454994 | Msa0860620:three_prime_UTR | 45.0% | |
GACGGTGAAATCACTCATAG+CGG | + | chr5_4:59455223-59455242 | Msa0860620:three_prime_UTR | 45.0% | |
CATAACATCGACCATCCTTG+TGG | - | chr5_4:59455252-59455271 | None:intergenic | 45.0% | |
CACAAGGATGGTCGATGTTA+TGG | + | chr5_4:59455250-59455269 | Msa0860620:three_prime_UTR | 45.0% | |
TTAAGGTCCAGTCCACTGCA+AGG | + | chr5_4:59449400-59449419 | Msa0860620:CDS | 50.0% | |
! | TGCTTGAAGAAGGAGCATGG+GGG | - | chr5_4:59451097-59451116 | None:intergenic | 50.0% |
! | ATGGTGCCAGAGGGAAGAAA+GGG | - | chr5_4:59451850-59451869 | None:intergenic | 50.0% |
GTCACATTGTGCTTGCAGAC+TGG | + | chr5_4:59451883-59451902 | Msa0860620:intron | 50.0% | |
!! | AGCACCCCAACGAGTTTTGA+AGG | - | chr5_4:59452373-59452392 | None:intergenic | 50.0% |
AGAGCCCCGTGACATATACT+GGG | + | chr5_4:59452455-59452474 | Msa0860620:CDS | 50.0% | |
CTTGAACAACCCATCTGGGT+TGG | + | chr5_4:59452777-59452796 | Msa0860620:intron | 50.0% | |
!! | TTGGTCTCGTGGTGTTGACT+TGG | + | chr5_4:59452796-59452815 | Msa0860620:intron | 50.0% |
!! | TGGTCTCGTGGTGTTGACTT+GGG | + | chr5_4:59452797-59452816 | Msa0860620:intron | 50.0% |
TTTGCTCCTCTCAAGGTCTC+AGG | + | chr5_4:59452834-59452853 | Msa0860620:intron | 50.0% | |
ATCGAACCTGAGACCTTGAG+AGG | - | chr5_4:59452843-59452862 | None:intergenic | 50.0% | |
! | TCCCTGGTGCTAAGTTTGGT+GGG | + | chr5_4:59452865-59452884 | Msa0860620:intron | 50.0% |
GCTTCAAAGCAATCCCAGGA+AGG | - | chr5_4:59453365-59453384 | None:intergenic | 50.0% | |
CGTGAAGAAGCAATGGATCC+TGG | + | chr5_4:59453878-59453897 | Msa0860620:CDS | 50.0% | |
GCAATGGATCCTGGGACTAT+TGG | + | chr5_4:59453887-59453906 | Msa0860620:CDS | 50.0% | |
!! | ATGAGAGTGCTGGAGCATTC+TGG | + | chr5_4:59454281-59454300 | Msa0860620:CDS | 50.0% |
ACTGGGAGAGCGATGAGTAA+TGG | - | chr5_4:59454400-59454419 | None:intergenic | 50.0% | |
TCAAGAGTGGAAGGAAGAGC+CGG | + | chr5_4:59454793-59454812 | Msa0860620:CDS | 50.0% | |
TCCAAACAAAACGCCAGTCG+CGG | + | chr5_4:59454822-59454841 | Msa0860620:CDS | 50.0% | |
! | CCACTATGTTTGCTAGGCAC+AGG | - | chr5_4:59454857-59454876 | None:intergenic | 50.0% |
CCTGTGCCTAGCAAACATAG+TGG | + | chr5_4:59454854-59454873 | Msa0860620:CDS | 50.0% | |
GTGCCTAGCAAACATAGTGG+TGG | + | chr5_4:59454857-59454876 | Msa0860620:CDS | 50.0% | |
GAGCCACCACTATGTTTGCT+AGG | - | chr5_4:59454863-59454882 | None:intergenic | 50.0% | |
ACAAATGCCCCTCCTTGCAG+TGG | - | chr5_4:59449415-59449434 | None:intergenic | 55.0% | |
GCCTGCTGCATTGCAAATGC+CGG | + | chr5_4:59449489-59449508 | Msa0860620:CDS | 55.0% | |
TCCGGCATTTGCAATGCAGC+AGG | - | chr5_4:59449493-59449512 | None:intergenic | 55.0% | |
ACGCCGTCCTGACCAATTCA+CGG | + | chr5_4:59450961-59450980 | Msa0860620:CDS | 55.0% | |
! | CATGGTGCCAGAGGGAAGAA+AGG | - | chr5_4:59451851-59451870 | None:intergenic | 55.0% |
CAGTATATGTCACGGGGCTC+TGG | - | chr5_4:59452456-59452475 | None:intergenic | 55.0% | |
CAGAGCCCCGTGACATATAC+TGG | + | chr5_4:59452454-59452473 | Msa0860620:CDS | 55.0% | |
ACCACGAGACCAACCCAGAT+GGG | - | chr5_4:59452789-59452808 | None:intergenic | 55.0% | |
GTCTCAGGTTCGATTCTCCC+TGG | + | chr5_4:59452849-59452868 | Msa0860620:intron | 55.0% | |
! | CTCCCTGGTGCTAAGTTTGG+TGG | + | chr5_4:59452864-59452883 | Msa0860620:intron | 55.0% |
GCCCACCAAACTTAGCACCA+GGG | - | chr5_4:59452869-59452888 | None:intergenic | 55.0% | |
AGCCCACCAAACTTAGCACC+AGG | - | chr5_4:59452870-59452889 | None:intergenic | 55.0% | |
GCATTCTGGCCTGATGTCCA+TGG | + | chr5_4:59454295-59454314 | Msa0860620:CDS | 55.0% | |
!! | TCCGCGACTGGCGTTTTGTT+TGG | - | chr5_4:59454826-59454845 | None:intergenic | 55.0% |
! | CACTCATAGCGGAGACCACA+AGG | + | chr5_4:59455234-59455253 | Msa0860620:three_prime_UTR | 55.0% |
! | CATAGCGGAGACCACAAGGA+TGG | + | chr5_4:59455238-59455257 | Msa0860620:three_prime_UTR | 55.0% |
AGGTCCAGTCCACTGCAAGG+AGG | + | chr5_4:59449403-59449422 | Msa0860620:CDS | 60.0% | |
GGTCCAGTCCACTGCAAGGA+GGG | + | chr5_4:59449404-59449423 | Msa0860620:CDS | 60.0% | |
GTCCAGTCCACTGCAAGGAG+GGG | + | chr5_4:59449405-59449424 | Msa0860620:CDS | 60.0% | |
!! | ACCCATCTGGGTTGGTCTCG+TGG | + | chr5_4:59452785-59452804 | Msa0860620:intron | 60.0% |
CACCACGAGACCAACCCAGA+TGG | - | chr5_4:59452790-59452809 | None:intergenic | 60.0% | |
GATGGATGGGCAGGATGTGC+TGG | + | chr5_4:59453782-59453801 | Msa0860620:CDS | 60.0% | |
CAGGTGTGTTCTTCCGCGAC+TGG | - | chr5_4:59454838-59454857 | None:intergenic | 60.0% | |
TGCCCCTCCTTGCAGTGGAC+TGG | - | chr5_4:59449410-59449429 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_4 | gene | 59448357 | 59455320 | 59448357 | ID=Msa0860620;Name=Msa0860620 |
chr5_4 | mRNA | 59448357 | 59455320 | 59448357 | ID=Msa0860620-mRNA-1;Parent=Msa0860620;Name=Msa0860620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=244|1|1|1|0.90|0.83|12|401|766 |
chr5_4 | exon | 59448357 | 59448576 | 59448357 | ID=Msa0860620-mRNA-1:exon:18225;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59449238 | 59449575 | 59449238 | ID=Msa0860620-mRNA-1:exon:18226;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59450372 | 59450518 | 59450372 | ID=Msa0860620-mRNA-1:exon:18227;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59450847 | 59450982 | 59450847 | ID=Msa0860620-mRNA-1:exon:18228;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59451137 | 59451238 | 59451137 | ID=Msa0860620-mRNA-1:exon:18229;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59451643 | 59451762 | 59451643 | ID=Msa0860620-mRNA-1:exon:18230;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59451901 | 59451981 | 59451901 | ID=Msa0860620-mRNA-1:exon:18231;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59452306 | 59452646 | 59452306 | ID=Msa0860620-mRNA-1:exon:18232;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59453332 | 59453577 | 59453332 | ID=Msa0860620-mRNA-1:exon:18233;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59453715 | 59454039 | 59453715 | ID=Msa0860620-mRNA-1:exon:18234;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59454256 | 59454489 | 59454256 | ID=Msa0860620-mRNA-1:exon:18235;Parent=Msa0860620-mRNA-1 |
chr5_4 | exon | 59454665 | 59455320 | 59454665 | ID=Msa0860620-mRNA-1:exon:18236;Parent=Msa0860620-mRNA-1 |
chr5_4 | five_prime_UTR | 59448357 | 59448576 | 59448357 | ID=Msa0860620-mRNA-1:five_prime_utr;Parent=Msa0860620-mRNA-1 |
chr5_4 | five_prime_UTR | 59449238 | 59449261 | 59449238 | ID=Msa0860620-mRNA-1:five_prime_utr;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59449262 | 59449575 | 59449262 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59450372 | 59450518 | 59450372 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59450847 | 59450982 | 59450847 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59451137 | 59451238 | 59451137 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59451643 | 59451762 | 59451643 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59451901 | 59451981 | 59451901 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59452306 | 59452646 | 59452306 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59453332 | 59453577 | 59453332 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59453715 | 59454039 | 59453715 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59454256 | 59454489 | 59454256 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | CDS | 59454665 | 59454919 | 59454665 | ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1 |
chr5_4 | three_prime_UTR | 59454920 | 59455320 | 59454920 | ID=Msa0860620-mRNA-1:three_prime_utr;Parent=Msa0860620-mRNA-1 |
Gene Sequence |
Protein sequence |