AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0860620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860620 MtrunA17_Chr5g0439871 98.172 766 14 0 1 766 1 766 0.0 1558
Msa0860620 MtrunA17_Chr7g0259591 65.486 762 258 2 1 759 1 760 0.0 1047
Msa0860620 MtrunA17_Chr5g0409801 62.483 717 267 1 1 715 1 717 0.0 952
Msa0860620 MtrunA17_Chr4g0075301 72.500 520 139 2 1 517 1 519 0.0 781
Msa0860620 MtrunA17_Chr6g0453641 31.950 723 458 12 10 731 9 698 1.95e-137 422
Msa0860620 MtrunA17_Chr7g0217981 31.818 726 446 11 12 711 11 713 5.71e-129 401
Msa0860620 MtrunA17_Chr4g0042751 31.766 702 442 12 2 696 5 676 7.93e-123 384
Msa0860620 MtrunA17_Chr1g0152031 30.423 710 453 10 10 712 9 684 2.07e-117 372
Msa0860620 MtrunA17_Chr2g0285541 31.646 711 451 13 22 722 21 706 2.17e-114 362
Msa0860620 MtrunA17_Chr4g0075291 67.227 238 75 1 531 765 2 239 5.39e-112 340
Msa0860620 MtrunA17_Chr5g0418061 30.404 717 460 13 2 711 5 689 6.80e-104 334
Msa0860620 MtrunA17_Chr3g0084121 34.236 406 249 5 300 702 2 392 1.11e-71 240
Msa0860620 MtrunA17_Chr3g0135281 45.361 97 51 2 318 413 59 154 4.73e-20 87.8
Msa0860620 MtrunA17_Chr4g0037231 86.000 50 7 0 106 155 88 137 8.26e-20 88.2
Msa0860620 MtrunA17_Chr3g0135291 35.294 187 112 4 421 605 5 184 1.36e-19 87.8
Msa0860620 MtrunA17_Chr3g0084131 30.000 150 101 3 113 260 57 204 1.39e-19 88.2
Msa0860620 MtrunA17_Chr8g0371331 21.605 648 376 22 86 617 75 706 7.01e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0860620 AT3G21620.1 75.871 746 177 2 1 743 1 746 0.0 1145
Msa0860620 AT1G11960.1 74.142 758 187 3 1 749 1 758 0.0 1143
Msa0860620 AT1G11960.3 74.142 758 187 3 1 749 1 758 0.0 1143
Msa0860620 AT4G22120.2 73.087 758 199 2 1 753 1 758 0.0 1138
Msa0860620 AT4G22120.4 73.087 758 199 2 1 753 1 758 0.0 1138
Msa0860620 AT4G22120.5 73.087 758 199 2 1 753 1 758 0.0 1138
Msa0860620 AT4G22120.1 73.087 758 199 2 1 753 1 758 0.0 1138
Msa0860620 AT4G22120.6 73.087 758 199 2 1 753 1 758 0.0 1138
Msa0860620 AT4G22120.3 73.087 758 199 2 1 753 1 758 0.0 1138
Msa0860620 AT4G15430.2 72.848 755 202 1 1 752 1 755 0.0 1135
Msa0860620 AT4G15430.1 72.751 756 202 2 1 752 1 756 0.0 1132
Msa0860620 AT4G04340.2 73.026 760 200 2 1 755 1 760 0.0 1127
Msa0860620 AT4G04340.1 73.026 760 200 2 1 755 1 760 0.0 1127
Msa0860620 AT4G04340.3 73.026 760 200 2 1 755 1 760 0.0 1127
Msa0860620 AT1G62320.3 72.120 764 208 3 1 759 1 764 0.0 1110
Msa0860620 AT1G62320.5 72.120 764 208 3 1 759 1 764 0.0 1110
Msa0860620 AT1G62320.4 71.990 764 207 4 1 759 1 762 0.0 1106
Msa0860620 AT1G62320.1 71.073 764 207 5 1 759 1 755 0.0 1084
Msa0860620 AT4G02900.4 65.608 756 257 3 1 755 1 754 0.0 1030
Msa0860620 AT4G02900.3 65.608 756 257 3 1 755 1 754 0.0 1030
Msa0860620 AT4G02900.1 65.608 756 257 3 1 755 1 754 0.0 1029
Msa0860620 AT1G11960.2 75.822 608 144 1 1 605 1 608 0.0 945
Msa0860620 AT1G32090.1 59.524 756 297 3 1 747 1 756 0.0 915
Msa0860620 AT1G62320.2 74.671 608 151 1 1 605 1 608 0.0 911
Msa0860620 AT4G02900.2 64.706 595 208 2 161 755 1 593 0.0 811
Msa0860620 AT3G01100.1 33.101 716 447 10 10 719 9 698 1.82e-136 420
Msa0860620 AT3G01100.4 33.101 716 447 10 10 719 55 744 5.91e-136 420
Msa0860620 AT3G01100.3 35.324 586 357 7 139 719 15 583 4.22e-122 379
Msa0860620 AT1G69450.2 30.000 730 474 11 4 725 3 703 2.84e-121 380
Msa0860620 AT1G69450.1 30.000 730 474 11 4 725 3 703 2.84e-121 380
Msa0860620 AT1G69450.3 28.930 757 474 12 4 725 3 730 8.27e-116 367
Msa0860620 AT1G58520.4 30.483 725 479 9 10 731 9 711 2.86e-112 358
Msa0860620 AT1G58520.1 30.483 725 479 9 10 731 9 711 2.86e-112 358
Msa0860620 AT1G58520.7 30.483 725 479 9 10 731 9 711 2.86e-112 358
Msa0860620 AT1G58520.6 30.483 725 479 9 10 731 9 711 2.86e-112 358
Msa0860620 AT1G58520.2 30.483 725 479 9 10 731 9 711 2.86e-112 358
Msa0860620 AT3G01100.2 32.888 599 376 8 10 605 9 584 1.61e-110 349
Msa0860620 AT3G54510.2 30.956 701 451 10 10 707 9 679 1.31e-105 339
Msa0860620 AT1G10090.1 29.471 699 460 7 10 701 9 681 1.34e-102 333
Msa0860620 AT1G30360.1 32.698 682 414 11 22 684 21 676 1.41e-102 332
Msa0860620 AT1G58520.5 31.040 596 396 6 139 731 10 593 1.39e-94 308
Msa0860620 AT3G54510.4 31.240 605 389 9 106 707 4 584 3.28e-91 298
Msa0860620 AT3G54510.1 31.240 605 389 9 106 707 4 584 3.28e-91 298
Msa0860620 AT3G54510.3 31.720 599 379 9 10 605 9 580 7.27e-88 289
Msa0860620 AT3G54510.5 32.207 503 317 8 106 605 4 485 9.64e-74 248
Msa0860620 AT3G54510.6 31.214 519 331 8 192 707 5 500 1.22e-73 249
Msa0860620 AT4G35870.1 21.839 435 289 8 86 474 92 521 4.99e-13 73.2

Find 181 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGTTCATTAATGTGTTTC+TGG 0.046711 5_4:+59453491 Msa0860620:CDS
TTCTCAGAAATTCACAATTT+TGG 0.122166 5_4:+59448543 Msa0860620:five_prime_UTR
TATGAAAAGCAAGAAAATTT+TGG 0.136309 5_4:+59455096 Msa0860620:three_prime_UTR
GCTGCTGGCATTATAGATTT+AGG 0.215346 5_4:-59452339 None:intergenic
TGTCTCACAACTTCTGTTAA+TGG 0.225729 5_4:+59454339 Msa0860620:CDS
TACTGCATTTGCATTCTTAC+TGG 0.245781 5_4:+59449309 Msa0860620:CDS
CTCCAGCACTCTCATATTCT+TGG 0.254312 5_4:-59454273 None:intergenic
TTTATACAAGGTTTCCTTCC+TGG 0.259327 5_4:+59453348 Msa0860620:CDS
TGAAACCATATTGTCAAAAC+TGG 0.272330 5_4:-59454415 None:intergenic
CAGAGCCCCGTGACATATAC+TGG 0.276735 5_4:+59452454 Msa0860620:CDS
ATCGAAACACCAATTGTCTT+TGG 0.283868 5_4:-59453719 None:intergenic
AAATACACCCTATCGTTTAT+AGG 0.291133 5_4:-59449355 None:intergenic
ATCCATAAGGCCAACTAAAA+AGG 0.297259 5_4:+59451741 Msa0860620:CDS
TCTGCTCATTCTCAAGATTT+CGG 0.301984 5_4:-59455276 None:intergenic
CTGTTATGGTCCCTGTCAAT+TGG 0.313291 5_4:+59450410 Msa0860620:CDS
AATGGTATCTGAGGGGTTTA+AGG 0.314148 5_4:+59449383 Msa0860620:CDS
GTCTCACAACTTCTGTTAAT+GGG 0.315219 5_4:+59454340 Msa0860620:CDS
ATAACATTACATTTCAATAA+TGG 0.324210 5_4:-59452634 None:intergenic
ATGAAGAAAGTTGCTTTCAT+TGG 0.328257 5_4:-59453743 None:intergenic
GCAATGGATCCTGGGACTAT+TGG 0.330247 5_4:+59453887 Msa0860620:CDS
AAATCTTTCAAATTGAAGTT+TGG 0.330467 5_4:-59454704 None:intergenic
GCCTGCATGTTCAATTAGTT+CGG 0.335017 5_4:-59449515 None:intergenic
ATGGCTTCACTTGGCGATAT+AGG 0.341404 5_4:+59449262 Msa0860620:CDS
TCTATATACAAAAGAAAATC+TGG 0.344704 5_4:-59455073 None:intergenic
CAGTTCATTAATGTGTTTCT+GGG 0.345844 5_4:+59453492 Msa0860620:CDS
TGTTTCCTTCAAAACTCGTT+GGG 0.348255 5_4:+59452365 Msa0860620:CDS
CACAAGGATGGTCGATGTTA+TGG 0.349284 5_4:+59455250 Msa0860620:three_prime_UTR
GACAGATAAGAGCAATATTC+AGG 0.350558 5_4:+59455124 Msa0860620:three_prime_UTR
TTATACAAGGTTTCCTTCCT+GGG 0.352560 5_4:+59453349 Msa0860620:CDS
TCAATAAGGAGACTTGTAAT+TGG 0.363088 5_4:+59452507 Msa0860620:CDS
TGTTCAATTAGTTCGGGTTC+CGG 0.363618 5_4:-59449508 None:intergenic
TATAGGTTGAATCCGAAGTA+TGG 0.364032 5_4:-59449338 None:intergenic
TTTCTTCATAACATACATAA+TGG 0.366062 5_4:+59453757 Msa0860620:CDS
CATTTGTGCAGGTACTTGTT+AGG 0.372092 5_4:+59451126 Msa0860620:intron
ATGAGAGTGCTGGAGCATTC+TGG 0.373825 5_4:+59454281 Msa0860620:CDS
AACCACATTTGAACGTTTCA+AGG 0.375878 5_4:-59450443 None:intergenic
CCTGCATGTTCAATTAGTTC+GGG 0.381047 5_4:-59449514 None:intergenic
AGAAAATGCTAGGAGTGAAA+TGG 0.384869 5_4:-59450389 None:intergenic
AAACTAGAAATCCAACAATA+TGG 0.385358 5_4:+59452415 Msa0860620:CDS
TCACTTAAAGAATTTCTTGT+TGG 0.388253 5_4:+59453838 Msa0860620:CDS
CAGTATATGTCACGGGGCTC+TGG 0.392278 5_4:-59452453 None:intergenic
CATATGTTTCTCTCTCAATA+AGG 0.392484 5_4:+59452493 Msa0860620:CDS
CAACAATATGGTTGACTGAA+TGG 0.398254 5_4:+59452427 Msa0860620:CDS
TTGACTTCAACTCAAATCTA+AGG 0.398336 5_4:-59454936 None:intergenic
GGGACTATTGGTTTCAATAC+AGG 0.399816 5_4:+59453899 Msa0860620:CDS
ACTTATAAACCCTTCGAACT+TGG 0.400798 5_4:-59453424 None:intergenic
CGTGAAGAAGCAATGGATCC+TGG 0.400945 5_4:+59453878 Msa0860620:CDS
CATTCAGTCAACCATATTGT+TGG 0.403385 5_4:-59452426 None:intergenic
TGCCCCTCCTTGCAGTGGAC+TGG 0.405812 5_4:-59449407 None:intergenic
GTTTATAAGTCAGTCTTCTC+TGG 0.406786 5_4:+59453437 Msa0860620:CDS
GAAAATGCTAGGAGTGAAAT+GGG 0.410463 5_4:-59450388 None:intergenic
GAATGAATTTATCTAGTTGT+TGG 0.411008 5_4:-59453539 None:intergenic
GTCTCCATCATCTTTGAAAA+CGG 0.412118 5_4:-59454750 None:intergenic
CCAGAAACACATTAATGAAC+TGG 0.416762 5_4:-59453491 None:intergenic
ATACAACTTTATTTCTTGCT+TGG 0.417063 5_4:+59453932 Msa0860620:CDS
CAGGATCCATTGCTTCTTCA+CGG 0.418998 5_4:-59453877 None:intergenic
CAGTCACTTGCTAATATAGA+AGG 0.422929 5_4:+59452582 Msa0860620:CDS
AATTTGTCAATATAGACTTC+AGG 0.427589 5_4:+59449440 Msa0860620:CDS
AAACCCCTCAGATACCATTT+CGG 0.427688 5_4:-59449379 None:intergenic
GATGGATGGGCAGGATGTGC+TGG 0.429016 5_4:+59453782 Msa0860620:CDS
GACATGATCATCAATATTGT+TGG 0.439726 5_4:-59453402 None:intergenic
TCCGGCATTTGCAATGCAGC+AGG 0.444627 5_4:-59449490 None:intergenic
AACAATATGGTTGACTGAAT+GGG 0.447238 5_4:+59452428 Msa0860620:CDS
CATACATAAGGTTCTTGAAC+TGG 0.447815 5_4:+59449464 Msa0860620:CDS
AACTTGATCATACCGTGAAT+TGG 0.448801 5_4:-59450973 None:intergenic
ATATTCCACTAGGATCAAAT+AGG 0.449169 5_4:+59450497 Msa0860620:CDS
GGACATGCTATATCTTGAAA+AGG 0.449434 5_4:+59450888 Msa0860620:CDS
ATAACATACATAATGGTTGA+TGG 0.452299 5_4:+59453764 Msa0860620:CDS
TGATCAATATCTAACTCATC+AGG 0.460224 5_4:+59451217 Msa0860620:CDS
TCTCCATCATCTTTGAAAAC+GGG 0.460410 5_4:-59454749 None:intergenic
TTTCTGGGGAGCATAATTAC+CGG 0.466924 5_4:+59453507 Msa0860620:CDS
TGCAGAATTCCAAAGACAAT+TGG 0.469700 5_4:+59453710 Msa0860620:intron
CAGGTGTGTTCTTCCGCGAC+TGG 0.472382 5_4:-59454835 None:intergenic
ATATCTTGTCTACCGTCATC+AGG 0.473416 5_4:+59454018 Msa0860620:CDS
ATGATGTATGGAAGTAGAAA+TGG 0.475585 5_4:-59453977 None:intergenic
TACTGGCATTTGCCATACTT+CGG 0.477975 5_4:+59449326 Msa0860620:CDS
CTGACTGATTCATCAGCATC+AGG 0.478193 5_4:-59451158 None:intergenic
TTGTTTCCTTCAAAACTCGT+TGG 0.486952 5_4:+59452364 Msa0860620:CDS
ACTAATTGAACATGCAGGCT+TGG 0.487155 5_4:+59449519 Msa0860620:CDS
GTGTCATTAGTCCAATTGAC+AGG 0.489392 5_4:-59450421 None:intergenic
TGTTAGTTCAACGCTCAAGC+AGG 0.497157 5_4:-59448421 None:intergenic
ACAATACGTCCATGGACATC+AGG 0.498283 5_4:-59454304 None:intergenic
ATTCTAGAAACGAATCCATA+AGG 0.498469 5_4:+59451728 Msa0860620:CDS
CGTTAAATTTCAGATAGAGC+TGG 0.503238 5_4:+59452293 Msa0860620:intron
CTTAATGACAAGTGCATGGT+TGG 0.510333 5_4:+59454979 Msa0860620:three_prime_UTR
TAGTTGTTGGAATGCAGTCC+CGG 0.513391 5_4:-59453526 None:intergenic
CATACATAATGGTTGATGGA+TGG 0.514476 5_4:+59453768 Msa0860620:CDS
GACATGCTATATCTTGAAAA+GGG 0.520309 5_4:+59450889 Msa0860620:CDS
GATCATACCGTGAATTGGTC+AGG 0.520969 5_4:-59450968 None:intergenic
TAGACTTCAGGTCATACATA+AGG 0.521133 5_4:+59449452 Msa0860620:CDS
GGTCCAGTCCACTGCAAGGA+GGG 0.521589 5_4:+59449404 Msa0860620:CDS
TTTAAGTGATAAAATATCAA+AGG 0.523335 5_4:-59453824 None:intergenic
TTGAAGGAAACAAAGGCTGC+TGG 0.523880 5_4:-59452354 None:intergenic
TGGATTCTGCTGTATACTTG+AGG 0.524624 5_4:+59449539 Msa0860620:CDS
TGATGAGTTAGATATTGATC+AGG 0.525466 5_4:-59451215 None:intergenic
ACATTTCAATAATGGACTTG+AGG 0.530070 5_4:-59452626 None:intergenic
AGTGACTGTACGAATGCAAT+GGG 0.531271 5_4:-59452567 None:intergenic
TAAATCTATAGACAGATTGA+AGG 0.531434 5_4:+59455009 Msa0860620:three_prime_UTR
GCCTGCTGCATTGCAAATGC+CGG 0.532910 5_4:+59449489 Msa0860620:CDS
ATGATCATGTCCAAGTTCGA+AGG 0.533063 5_4:+59453414 Msa0860620:CDS
AACCAAGAATATGAGAGTGC+TGG 0.536287 5_4:+59454271 Msa0860620:CDS
TACTTGAGGATCTACTTACT+CGG 0.536863 5_4:+59449553 Msa0860620:CDS
CACCTTGAAACGTTCAAATG+TGG 0.537370 5_4:+59450441 Msa0860620:CDS
CTTATTGAGAGAGAAACATA+TGG 0.537706 5_4:-59452492 None:intergenic
AGGTCTTTGTGGCAGTAAAG+TGG 0.540543 5_4:+59451912 Msa0860620:CDS
TCTATAGACAGATTGAAGGT+TGG 0.543525 5_4:+59455013 Msa0860620:three_prime_UTR
TCAAGAGTGGAAGGAAGAGC+CGG 0.545999 5_4:+59454793 Msa0860620:CDS
GAGCCACCACTATGTTTGCT+AGG 0.546081 5_4:-59454860 None:intergenic
GATAGAGCTGGAGAAAGATA+AGG 0.546330 5_4:+59452305 Msa0860620:intron
GTTATCCCAGTATATGTCAC+GGG 0.546554 5_4:-59452460 None:intergenic
GGATTCAACCTATAAACGAT+AGG 0.548438 5_4:+59449347 Msa0860620:CDS
AAGAAATAAAGTTGTATCTG+AGG 0.548593 5_4:-59453926 None:intergenic
TCAAAGAACATGGCTTCACT+TGG 0.548706 5_4:+59449253 Msa0860620:exon
ATACATAATGGTTGATGGAT+GGG 0.551192 5_4:+59453769 Msa0860620:CDS
ACGCCGTCCTGACCAATTCA+CGG 0.551285 5_4:+59450961 Msa0860620:CDS
ATCAGTAATGCCATGCATAG+AGG 0.551970 5_4:-59454891 None:intergenic
ACTGGGAGAGCGATGAGTAA+TGG 0.553292 5_4:-59454397 None:intergenic
GTGAAGAAGCAATGGATCCT+GGG 0.559253 5_4:+59453879 Msa0860620:CDS
CACTCATAGCGGAGACCACA+AGG 0.559832 5_4:+59455234 Msa0860620:three_prime_UTR
TCCAAACAAAACGCCAGTCG+CGG 0.560248 5_4:+59454822 Msa0860620:CDS
CCACTATGTTTGCTAGGCAC+AGG 0.561692 5_4:-59454854 None:intergenic
GCATTCTGGCCTGATGTCCA+TGG 0.563003 5_4:+59454295 Msa0860620:CDS
GTAAGAATGCAAATGCAGTA+AGG 0.563890 5_4:-59449306 None:intergenic
TCAATAATGGACTTGAGGAA+TGG 0.570509 5_4:-59452621 None:intergenic
GATTCAACCTATAAACGATA+GGG 0.570671 5_4:+59449348 Msa0860620:CDS
GTCAAGGACTAAGTTCGTGT+TGG 0.570794 5_4:+59454954 Msa0860620:three_prime_UTR
GTTAGTTCAACGCTCAAGCA+GGG 0.572095 5_4:-59448420 None:intergenic
ATAATGGTTGATGGATGGGC+AGG 0.572967 5_4:+59453773 Msa0860620:CDS
TCAATTTCAAATATTCCACT+AGG 0.576715 5_4:+59450487 Msa0860620:CDS
TTCTGGGGAGCATAATTACC+GGG 0.577184 5_4:+59453508 Msa0860620:CDS
ACAAATGCCCCTCCTTGCAG+TGG 0.577690 5_4:-59449412 None:intergenic
TGTGATGAGTCAAGAGTGGA+AGG 0.578062 5_4:+59454784 Msa0860620:CDS
TTAGATTTGAGTTGAAGTCA+AGG 0.578851 5_4:+59454938 Msa0860620:three_prime_UTR
AAGTGACTGTACGAATGCAA+TGG 0.582913 5_4:-59452568 None:intergenic
AATGGATGAGTAGTAAAAGC+AGG 0.586318 5_4:-59454463 None:intergenic
GTCCAGTCCACTGCAAGGAG+GGG 0.588159 5_4:+59449405 Msa0860620:CDS
GTTTCCTTCAAAACTCGTTG+GGG 0.588764 5_4:+59452366 Msa0860620:CDS
AGTTCATTAATGTGTTTCTG+GGG 0.590166 5_4:+59453493 Msa0860620:CDS
AATAGCTTCAAAGCAATCCC+AGG 0.590192 5_4:-59453366 None:intergenic
TGATCATGTCCAAGTTCGAA+GGG 0.591481 5_4:+59453415 Msa0860620:CDS
GGACCATAACAGAAAATGCT+AGG 0.593519 5_4:-59450399 None:intergenic
AAAAGACCGTGAAGAAGCAA+TGG 0.595265 5_4:+59453871 Msa0860620:CDS
CTGGAAGATGTAATATCTTG+AGG 0.595341 5_4:-59453472 None:intergenic
CATCATCTTTGAAAACGGGA+TGG 0.595460 5_4:-59454745 None:intergenic
ATGCAAATACAATACGTCCA+TGG 0.598039 5_4:-59454312 None:intergenic
CAAGATATAGCATGTCCAGA+AGG 0.603409 5_4:-59450882 None:intergenic
GATGGATATATGCATCATAG+AGG 0.603788 5_4:-59454727 None:intergenic
TCATTACAAGCCTCTATGCA+TGG 0.604132 5_4:+59454881 Msa0860620:CDS
AGCAATGGTCAAAGACACAT+TGG 0.604396 5_4:+59454667 Msa0860620:CDS
CCCGAACTAATTGAACATGC+AGG 0.605147 5_4:+59449514 Msa0860620:CDS
TGATAGTAAATCAAAGAACA+TGG 0.609951 5_4:+59449243 Msa0860620:exon
TGACATATACTGGGATAACA+TGG 0.614941 5_4:+59452464 Msa0860620:CDS
TGTTATCCCAGTATATGTCA+CGG 0.616689 5_4:-59452461 None:intergenic
GTATTGAAACCAATAGTCCC+AGG 0.617054 5_4:-59453896 None:intergenic
TGCGTGAACTTAGGAAGCAA+TGG 0.622167 5_4:+59454652 Msa0860620:intron
ACTTGAGGATCTACTTACTC+GGG 0.622654 5_4:+59449554 Msa0860620:CDS
ACGTACCTATTTGATCCTAG+TGG 0.628112 5_4:-59450502 None:intergenic
GAAACCATATTGTCAAAACT+GGG 0.637941 5_4:-59454414 None:intergenic
CATAGCGGAGACCACAAGGA+TGG 0.640973 5_4:+59455238 Msa0860620:three_prime_UTR
GCTTCAAAGCAATCCCAGGA+AGG 0.641603 5_4:-59453362 None:intergenic
AGCTAATGTTTACCTGATGA+CGG 0.643360 5_4:-59454030 None:intergenic
GAGTTAGATATTGATCAGGA+TGG 0.644477 5_4:-59451211 None:intergenic
AGAGCCCCGTGACATATACT+GGG 0.645760 5_4:+59452455 Msa0860620:CDS
CATAACATCGACCATCCTTG+TGG 0.648397 5_4:-59455249 None:intergenic
TTAAGGTCCAGTCCACTGCA+AGG 0.657871 5_4:+59449400 Msa0860620:CDS
GTGATGTGATGAGTCAAGAG+TGG 0.660535 5_4:+59454780 Msa0860620:CDS
GTGCCTAGCAAACATAGTGG+TGG 0.668424 5_4:+59454857 Msa0860620:CDS
TTAGTTCAACGCTCAAGCAG+GGG 0.670183 5_4:-59448419 None:intergenic
AGGTCCAGTCCACTGCAAGG+AGG 0.672026 5_4:+59449403 Msa0860620:CDS
GGAGCTTAATGACAAGTGCA+TGG 0.674311 5_4:+59454975 Msa0860620:three_prime_UTR
AATGGACTTGAGGAATGGTG+CGG 0.681567 5_4:-59452616 None:intergenic
TTTCCGAAATGGTATCTGAG+GGG 0.685701 5_4:+59449376 Msa0860620:CDS
TGTCATTAGTCCAATTGACA+GGG 0.686521 5_4:-59450420 None:intergenic
GACGGTGAAATCACTCATAG+CGG 0.692455 5_4:+59455223 Msa0860620:three_prime_UTR
GTGTGACTACAGCATACACA+AGG 0.702184 5_4:-59453955 None:intergenic
ATACCGTGAATTGGTCAGGA+CGG 0.704095 5_4:-59450964 None:intergenic
AGATTGAAGTACAGACACAT+CGG 0.713824 5_4:+59455296 Msa0860620:three_prime_UTR
TTATCCCAGTATATGTCACG+GGG 0.723719 5_4:-59452459 None:intergenic
CCTGTGCCTAGCAAACATAG+TGG 0.725948 5_4:+59454854 Msa0860620:CDS
AAAATGCTAGGAGTGAAATG+GGG 0.730707 5_4:-59450387 None:intergenic
ACTGATTCATCAGCATCAGG+CGG 0.734704 5_4:-59451155 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCAATTTTAGATTT+TGG + chr5_4:59448632-59448651 Msa0860620:intron 10.0%
!!! TAAAATCCAATTTTTTTATT+TGG - chr5_4:59448690-59448709 None:intergenic 10.0%
!! AAAATAAATGTTATGAAATT+TGG + chr5_4:59448751-59448770 Msa0860620:intron 10.0%
!! ATAAATAATAAATCATGTAT+TGG - chr5_4:59449659-59449678 None:intergenic 10.0%
!!! TAAGTAATTATTTTTTTGTA+GGG - chr5_4:59449807-59449826 None:intergenic 10.0%
!!! ATAAGTAATTATTTTTTTGT+AGG - chr5_4:59449808-59449827 None:intergenic 10.0%
!! TCAACTATTATAAAAAAAAA+GGG - chr5_4:59450265-59450284 None:intergenic 10.0%
!! ATCAACTATTATAAAAAAAA+AGG - chr5_4:59450266-59450285 None:intergenic 10.0%
!! ATTATGAAAATCTTAATAAA+AGG + chr5_4:59452052-59452071 Msa0860620:intron 10.0%
!! TAATATAATATGATATTGTA+TGG + chr5_4:59453121-59453140 Msa0860620:intron 10.0%
!!! GTTTTATTTTTAAAAATTGA+CGG + chr5_4:59455205-59455224 Msa0860620:three_prime_UTR 10.0%
!! GTAAAACCAAATAAAAAAAT+TGG + chr5_4:59448681-59448700 Msa0860620:intron 15.0%
!! AAAAAAAAAAACTAGTAAAG+TGG - chr5_4:59449040-59449059 None:intergenic 15.0%
!! ATGATTTATTATTTATACAC+AGG + chr5_4:59449663-59449682 Msa0860620:intron 15.0%
!! CAAAAACTTAAAATTAAGTA+AGG - chr5_4:59449722-59449741 None:intergenic 15.0%
!!! CTTACTTAATTTTAAGTTTT+TGG + chr5_4:59449720-59449739 Msa0860620:intron 15.0%
!! AAACCTATTAAAATTAAGTA+AGG - chr5_4:59449778-59449797 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr5_4:59449869-59449888 None:intergenic 15.0%
!! AAACAAATTTGAATTTAGTA+AGG + chr5_4:59450130-59450149 Msa0860620:intron 15.0%
!! AGAATTATGAAAATTAAGTA+AGG + chr5_4:59450191-59450210 Msa0860620:intron 15.0%
!! CTTATTCATTTAAATAAACA+AGG - chr5_4:59450629-59450648 None:intergenic 15.0%
!! ATAAATCTTTATCATAGAAA+CGG - chr5_4:59451042-59451061 None:intergenic 15.0%
!! ATTTAACTAAAAAACCAATT+TGG - chr5_4:59452197-59452216 None:intergenic 15.0%
!! ATAACATTACATTTCAATAA+TGG - chr5_4:59452637-59452656 None:intergenic 15.0%
!! AAAGAGAAAAATGTAATAAA+AGG - chr5_4:59452670-59452689 None:intergenic 15.0%
!!! TATTACATTTTTCTCTTTAT+TGG + chr5_4:59452672-59452691 Msa0860620:intron 15.0%
!!! CTGAATTTTCTATTTATTTA+AGG - chr5_4:59453011-59453030 None:intergenic 15.0%
!! CTTAAATAAATAGAAAATTC+AGG + chr5_4:59453009-59453028 Msa0860620:intron 15.0%
!! TTTAAGTGATAAAATATCAA+AGG - chr5_4:59453827-59453846 None:intergenic 15.0%
!!! TTTTGAAGTGAATTATAGTT+TGG + chr5_4:59448885-59448904 Msa0860620:intron 20.0%
!! GAAGAATTGTATGAAATATA+TGG + chr5_4:59448970-59448989 Msa0860620:intron 20.0%
!! TCACTGTTTATATCATTTAT+TGG + chr5_4:59449153-59449172 Msa0860620:intron 20.0%
!! TTGGAAGATTAGAAATTAAA+CGG + chr5_4:59449172-59449191 Msa0860620:intron 20.0%
!!! AGTCCTTACTTAATTTTAAT+AGG + chr5_4:59449772-59449791 Msa0860620:intron 20.0%
!!! TTTAAAACGACAAAAGTTAA+AGG + chr5_4:59449980-59449999 Msa0860620:intron 20.0%
!!! AAAAGGGTTAAATATGTTTT+TGG - chr5_4:59450249-59450268 None:intergenic 20.0%
!! AAACAAATTAATACATCTTC+TGG + chr5_4:59450728-59450747 Msa0860620:intron 20.0%
!! GAAAAGCTTAACAAATATTT+CGG - chr5_4:59450784-59450803 None:intergenic 20.0%
!! AAAATATCACTTAAGAGTAA+GGG - chr5_4:59451618-59451637 None:intergenic 20.0%
!! AAAAATATCACTTAAGAGTA+AGG - chr5_4:59451619-59451638 None:intergenic 20.0%
!!! ATAGAATACCTTTAAAAAGA+TGG - chr5_4:59451825-59451844 None:intergenic 20.0%
!! TTATAGTAACTTGATACAAA+AGG + chr5_4:59452944-59452963 Msa0860620:intron 20.0%
!! ATAATCTTACATTATCTCTT+AGG - chr5_4:59453071-59453090 None:intergenic 20.0%
!! TTTCTTCATAACATACATAA+TGG + chr5_4:59453757-59453776 Msa0860620:CDS 20.0%
!! GAAAAAAAAAATACCTGTAA+TGG - chr5_4:59454484-59454503 None:intergenic 20.0%
!!! TAAACAGAAAGCAATATTTT+AGG + chr5_4:59454568-59454587 Msa0860620:intron 20.0%
!!! AAACAGAAAGCAATATTTTA+GGG + chr5_4:59454569-59454588 Msa0860620:intron 20.0%
!!! GAGTTAATTTTCTTTTTTTG+TGG + chr5_4:59454629-59454648 Msa0860620:intron 20.0%
!! AAATCTTTCAAATTGAAGTT+TGG - chr5_4:59454707-59454726 None:intergenic 20.0%
!! TCTATATACAAAAGAAAATC+TGG - chr5_4:59455076-59455095 None:intergenic 20.0%
!!! TATGAAAAGCAAGAAAATTT+TGG + chr5_4:59455096-59455115 Msa0860620:three_prime_UTR 20.0%
!!! ATGAAAAGCAAGAAAATTTT+GGG + chr5_4:59455097-59455116 Msa0860620:three_prime_UTR 20.0%
!! TTCTCAGAAATTCACAATTT+TGG + chr5_4:59448543-59448562 Msa0860620:five_prime_UTR 25.0%
!! TTCATCATTGATTGTTAAGA+TGG + chr5_4:59448718-59448737 Msa0860620:intron 25.0%
!!! ATTGTGATTTTAGTTCACAA+AGG + chr5_4:59448807-59448826 Msa0860620:intron 25.0%
!!! TTGTGATTTTAGTTCACAAA+GGG + chr5_4:59448808-59448827 Msa0860620:intron 25.0%
! GAATTGTATGAAATATATGG+TGG + chr5_4:59448973-59448992 Msa0860620:intron 25.0%
! AAAAAAACTAGTAAAGTGGT+GGG - chr5_4:59449036-59449055 None:intergenic 25.0%
! AAAAAAAACTAGTAAAGTGG+TGG - chr5_4:59449037-59449056 None:intergenic 25.0%
! TGATAGTAAATCAAAGAACA+TGG + chr5_4:59449243-59449262 Msa0860620:exon 25.0%
! AATTTGTCAATATAGACTTC+AGG + chr5_4:59449440-59449459 Msa0860620:CDS 25.0%
!!! TAAAGTTTGTAGTTCTGAAT+CGG + chr5_4:59449603-59449622 Msa0860620:intron 25.0%
!! TTAGAAGTTCCCAATTTTAT+GGG - chr5_4:59449748-59449767 None:intergenic 25.0%
!!! AAACAAACTTTGTTTTAGCA+GGG - chr5_4:59449840-59449859 None:intergenic 25.0%
!!! TAAACAAACTTTGTTTTAGC+AGG - chr5_4:59449841-59449860 None:intergenic 25.0%
!!! AATCTTGCGATAATTTTTTG+TGG + chr5_4:59450034-59450053 Msa0860620:intron 25.0%
!!! TGAGTGCATAAATTTTTTGT+AGG + chr5_4:59450161-59450180 Msa0860620:intron 25.0%
!!! GAGTGCATAAATTTTTTGTA+GGG + chr5_4:59450162-59450181 Msa0860620:intron 25.0%
!!! TTTTTGGTCCCTATAAAATT+GGG - chr5_4:59450233-59450252 None:intergenic 25.0%
! ATCTTATTCAATTGAATTGC+AGG + chr5_4:59450350-59450369 Msa0860620:intron 25.0%
! TCAATTTCAAATATTCCACT+AGG + chr5_4:59450487-59450506 Msa0860620:CDS 25.0%
! CTAAAATGATAGACTATAGA+TGG - chr5_4:59450577-59450596 None:intergenic 25.0%
!! ATAGAATTGTTTAGAGTTAG+AGG - chr5_4:59450687-59450706 None:intergenic 25.0%
!! TTAATACATCTTCTGGTTAT+TGG + chr5_4:59450735-59450754 Msa0860620:intron 25.0%
! CTTAACAAATATTTCGGTTA+GGG - chr5_4:59450778-59450797 None:intergenic 25.0%
!! TCATTACTTATTGCAGATTT+TGG + chr5_4:59450831-59450850 Msa0860620:intron 25.0%
!! TATGAATTTGAAGTCATAAC+AGG - chr5_4:59451367-59451386 None:intergenic 25.0%
! GAGAATTATATCTTGTTAAC+TGG + chr5_4:59451460-59451479 Msa0860620:intron 25.0%
! AGAAGAAGAAAAAACAGAAT+TGG + chr5_4:59451683-59451702 Msa0860620:CDS 25.0%
!! AGATTTTCATAATACAAGTG+TGG - chr5_4:59452045-59452064 None:intergenic 25.0%
! AAACTAGAAATCCAACAATA+TGG + chr5_4:59452415-59452434 Msa0860620:CDS 25.0%
!! ATCATCAAGTCTTTTATACA+AGG + chr5_4:59453336-59453355 Msa0860620:CDS 25.0%
! ATATTGTTGGCAAAAAAATG+AGG - chr5_4:59453392-59453411 None:intergenic 25.0%
! GAATGAATTTATCTAGTTGT+TGG - chr5_4:59453542-59453561 None:intergenic 25.0%
! ACAGTCATATATATATGCAT+AGG - chr5_4:59453593-59453612 None:intergenic 25.0%
! ATAACATACATAATGGTTGA+TGG + chr5_4:59453764-59453783 Msa0860620:CDS 25.0%
! TCACTTAAAGAATTTCTTGT+TGG + chr5_4:59453838-59453857 Msa0860620:CDS 25.0%
! AAGAAATAAAGTTGTATCTG+AGG - chr5_4:59453929-59453948 None:intergenic 25.0%
!! ATACAACTTTATTTCTTGCT+TGG + chr5_4:59453932-59453951 Msa0860620:CDS 25.0%
!!! TCGATTTTAATATATGCTCA+TGG - chr5_4:59454176-59454195 None:intergenic 25.0%
! TACATGCACTAAAATACTTA+AGG - chr5_4:59454202-59454221 None:intergenic 25.0%
!! TTTTGACAATATGGTTTCAT+CGG + chr5_4:59454419-59454438 Msa0860620:CDS 25.0%
!!! AACAGAAAGCAATATTTTAG+GGG + chr5_4:59454570-59454589 Msa0860620:intron 25.0%
! TAAATCTATAGACAGATTGA+AGG + chr5_4:59455009-59455028 Msa0860620:three_prime_UTR 25.0%
!! TGTAATGAGTTTTTACTCTA+TGG + chr5_4:59455153-59455172 Msa0860620:three_prime_UTR 25.0%
! CACTCTCATTATCACATTTT+TGG + chr5_4:59448460-59448479 Msa0860620:five_prime_UTR 30.0%
GAAACAGAAAAAGAAGAGAA+TGG - chr5_4:59448505-59448524 None:intergenic 30.0%
!!! GTTATGCATGTTTTTTTGTG+TGG + chr5_4:59448654-59448673 Msa0860620:intron 30.0%
AAAAAACTAGTAAAGTGGTG+GGG - chr5_4:59449035-59449054 None:intergenic 30.0%
! AGAAGAGTTGTATATTTTGC+AGG + chr5_4:59449209-59449228 Msa0860620:intron 30.0%
! GAAGAGTTGTATATTTTGCA+GGG + chr5_4:59449210-59449229 Msa0860620:intron 30.0%
GATTCAACCTATAAACGATA+GGG + chr5_4:59449348-59449367 Msa0860620:CDS 30.0%
AAATACACCCTATCGTTTAT+AGG - chr5_4:59449358-59449377 None:intergenic 30.0%
TTCAGAACTACAAACTTTAG+AGG - chr5_4:59449602-59449621 None:intergenic 30.0%
ATTGGTTAAAATCTACTCTC+TGG - chr5_4:59449641-59449660 None:intergenic 30.0%
!! TTTTTGGTCCCCATAAAATT+GGG + chr5_4:59449736-59449755 Msa0860620:intron 30.0%
! TAGAAGTTCCCAATTTTATG+GGG - chr5_4:59449747-59449766 None:intergenic 30.0%
! CTTAGAAGTTCCCAATTTTA+TGG - chr5_4:59449749-59449768 None:intergenic 30.0%
CATGTTTACAACACTATGAA+AGG + chr5_4:59449903-59449922 Msa0860620:intron 30.0%
AAGGTAAACGTAACAAAATC+TGG + chr5_4:59449999-59450018 Msa0860620:intron 30.0%
AAGTAAGGACTAAACTTAGA+AGG + chr5_4:59450206-59450225 Msa0860620:intron 30.0%
! TTAGAAGGTCCCAATTTTAT+AGG + chr5_4:59450221-59450240 Msa0860620:intron 30.0%
! TAGAAGGTCCCAATTTTATA+GGG + chr5_4:59450222-59450241 Msa0860620:intron 30.0%
!!! GTTTTTGGTCCCTATAAAAT+TGG - chr5_4:59450234-59450253 None:intergenic 30.0%
TCTTGAAACTAGAAAAACGT+AGG - chr5_4:59450293-59450312 None:intergenic 30.0%
ATATTCCACTAGGATCAAAT+AGG + chr5_4:59450497-59450516 Msa0860620:CDS 30.0%
! AAGAAGGTGCAAAAAAAGAA+TGG - chr5_4:59450552-59450571 None:intergenic 30.0%
GCTTAACAAATATTTCGGTT+AGG - chr5_4:59450779-59450798 None:intergenic 30.0%
TGCAATAAGTAATGAGTTAC+TGG - chr5_4:59450826-59450845 None:intergenic 30.0%
GACATGCTATATCTTGAAAA+GGG + chr5_4:59450889-59450908 Msa0860620:CDS 30.0%
! GCTAGTTGAACATTTCTTTT+TGG + chr5_4:59451184-59451203 Msa0860620:CDS 30.0%
TGATGAGTTAGATATTGATC+AGG - chr5_4:59451218-59451237 None:intergenic 30.0%
TGATCAATATCTAACTCATC+AGG + chr5_4:59451217-59451236 Msa0860620:CDS 30.0%
! TAATGTTTTCCGATACCTTT+GGG + chr5_4:59451503-59451522 Msa0860620:intron 30.0%
!! TGAATTTTACCCAAAGGTAT+CGG - chr5_4:59451515-59451534 None:intergenic 30.0%
! TTGCATTGAATTTTACCCAA+AGG - chr5_4:59451521-59451540 None:intergenic 30.0%
TCAATGCAAAATAACGATTC+TGG + chr5_4:59451532-59451551 Msa0860620:intron 30.0%
CAATGCAAAATAACGATTCT+GGG + chr5_4:59451533-59451552 Msa0860620:intron 30.0%
!! ATTCTGGGATGAATTCTTAT+TGG + chr5_4:59451548-59451567 Msa0860620:intron 30.0%
GAAAACACAATGAAACAACT+TGG - chr5_4:59451596-59451615 None:intergenic 30.0%
!! CTCTTAAGTGATATTTTTGC+AGG + chr5_4:59451621-59451640 Msa0860620:intron 30.0%
! ATTCTAGAAACGAATCCATA+AGG + chr5_4:59451728-59451747 Msa0860620:CDS 30.0%
!! AGATGACATACCTTTTTAGT+TGG - chr5_4:59451754-59451773 None:intergenic 30.0%
AACAGATTTGGAAGATGATT+TGG - chr5_4:59451801-59451820 None:intergenic 30.0%
TAAAAAGATGGCAACAGATT+TGG - chr5_4:59451813-59451832 None:intergenic 30.0%
! ATCTGTTGCCATCTTTTTAA+AGG + chr5_4:59451814-59451833 Msa0860620:intron 30.0%
AAGCAAAGGTTACAAATATG+AGG - chr5_4:59452147-59452166 None:intergenic 30.0%
GCAATGATGAAAATAAGCAA+AGG - chr5_4:59452161-59452180 None:intergenic 30.0%
AACAATATGGTTGACTGAAT+GGG + chr5_4:59452428-59452447 Msa0860620:CDS 30.0%
CTTATTGAGAGAGAAACATA+TGG - chr5_4:59452495-59452514 None:intergenic 30.0%
CATATGTTTCTCTCTCAATA+AGG + chr5_4:59452493-59452512 Msa0860620:CDS 30.0%
TCAATAAGGAGACTTGTAAT+TGG + chr5_4:59452507-59452526 Msa0860620:CDS 30.0%
!! ACATTTCAATAATGGACTTG+AGG - chr5_4:59452629-59452648 None:intergenic 30.0%
AAATACTAATCCCTATGTGT+AGG + chr5_4:59452969-59452988 Msa0860620:intron 30.0%
TATCTAGTCTGATTACATCA+CGG + chr5_4:59453177-59453196 Msa0860620:intron 30.0%
CATAACATTAACATCTACCA+TGG - chr5_4:59453295-59453314 None:intergenic 30.0%
GACATGATCATCAATATTGT+TGG - chr5_4:59453405-59453424 None:intergenic 30.0%
CAGTTCATTAATGTGTTTCT+GGG + chr5_4:59453492-59453511 Msa0860620:CDS 30.0%
! AGTTCATTAATGTGTTTCTG+GGG + chr5_4:59453493-59453512 Msa0860620:CDS 30.0%
GTCATATATATATGCATAGG+AGG - chr5_4:59453590-59453609 None:intergenic 30.0%
! ATGAAGAAAGTTGCTTTCAT+TGG - chr5_4:59453746-59453765 None:intergenic 30.0%
!! ATACATAATGGTTGATGGAT+GGG + chr5_4:59453769-59453788 Msa0860620:CDS 30.0%
ATGATGTATGGAAGTAGAAA+TGG - chr5_4:59453980-59453999 None:intergenic 30.0%
CCAAAAAAGACAATGATGTA+TGG - chr5_4:59453992-59454011 None:intergenic 30.0%
!!! CCATACATCATTGTCTTTTT+TGG + chr5_4:59453989-59454008 Msa0860620:CDS 30.0%
!!! CATCATTGTCTTTTTTGGTT+TGG + chr5_4:59453994-59454013 Msa0860620:CDS 30.0%
! TATTAATGTCTGAAACTGAC+TGG + chr5_4:59454230-59454249 Msa0860620:intron 30.0%
GAAACCATATTGTCAAAACT+GGG - chr5_4:59454417-59454436 None:intergenic 30.0%
TGAAACCATATTGTCAAAAC+TGG - chr5_4:59454418-59454437 None:intergenic 30.0%
! TTTTACTACTCATCCATTAC+AGG + chr5_4:59454468-59454487 Msa0860620:CDS 30.0%
! AGAAGCATGTTCAAAACATA+GGG - chr5_4:59454599-59454618 None:intergenic 30.0%
! AAGAAGCATGTTCAAAACAT+AGG - chr5_4:59454600-59454619 None:intergenic 30.0%
TTGACTTCAACTCAAATCTA+AGG - chr5_4:59454939-59454958 None:intergenic 30.0%
!! TTAGATTTGAGTTGAAGTCA+AGG + chr5_4:59454938-59454957 Msa0860620:three_prime_UTR 30.0%
!!! CACAATTTTGGTGCTACATA+AGG + chr5_4:59448555-59448574 Msa0860620:five_prime_UTR 35.0%
GGTAATGCACTCTTATGTAA+TGG + chr5_4:59448576-59448595 Msa0860620:intron 35.0%
! TCATTGATTGTTAAGATGGC+TGG + chr5_4:59448722-59448741 Msa0860620:intron 35.0%
TGAGCTAGATGATGTGAAAA+GGG + chr5_4:59448919-59448938 Msa0860620:intron 35.0%
AGACAGTGACATAAAGAACA+TGG - chr5_4:59449069-59449088 None:intergenic 35.0%
! TTGTATATTTTGCAGGGAGT+AGG + chr5_4:59449216-59449235 Msa0860620:intron 35.0%
GTAAGAATGCAAATGCAGTA+AGG - chr5_4:59449309-59449328 None:intergenic 35.0%
TACTGCATTTGCATTCTTAC+TGG + chr5_4:59449309-59449328 Msa0860620:CDS 35.0%
! TATAGGTTGAATCCGAAGTA+TGG - chr5_4:59449341-59449360 None:intergenic 35.0%
GGATTCAACCTATAAACGAT+AGG + chr5_4:59449347-59449366 Msa0860620:CDS 35.0%
! ATAGGGTGTATTTTCCGAAA+TGG + chr5_4:59449365-59449384 Msa0860620:CDS 35.0%
! ATTTTCCGAAATGGTATCTG+AGG + chr5_4:59449374-59449393 Msa0860620:CDS 35.0%
! TTTTCCGAAATGGTATCTGA+GGG + chr5_4:59449375-59449394 Msa0860620:CDS 35.0%
TAGACTTCAGGTCATACATA+AGG + chr5_4:59449452-59449471 Msa0860620:CDS 35.0%
CATACATAAGGTTCTTGAAC+TGG + chr5_4:59449464-59449483 Msa0860620:CDS 35.0%
TACTTGAGGATCTACTTACT+CGG + chr5_4:59449553-59449572 Msa0860620:CDS 35.0%
!!! GTTTTTGGTCCCCATAAAAT+TGG + chr5_4:59449735-59449754 Msa0860620:intron 35.0%
AAAATGCTAGGAGTGAAATG+GGG - chr5_4:59450390-59450409 None:intergenic 35.0%
GAAAATGCTAGGAGTGAAAT+GGG - chr5_4:59450391-59450410 None:intergenic 35.0%
AGAAAATGCTAGGAGTGAAA+TGG - chr5_4:59450392-59450411 None:intergenic 35.0%
! ACTCCTAGCATTTTCTGTTA+TGG + chr5_4:59450396-59450415 Msa0860620:CDS 35.0%
TGTCATTAGTCCAATTGACA+GGG - chr5_4:59450423-59450442 None:intergenic 35.0%
AACCACATTTGAACGTTTCA+AGG - chr5_4:59450446-59450465 None:intergenic 35.0%
TAGACTATAGATGGCAAAGA+AGG - chr5_4:59450568-59450587 None:intergenic 35.0%
!!! TTCTGGTTATTGGTTTTACG+AGG + chr5_4:59450745-59450764 Msa0860620:intron 35.0%
! ATTTTGGACTCACTTGGTAA+TGG + chr5_4:59450847-59450866 Msa0860620:CDS 35.0%
GGACATGCTATATCTTGAAA+AGG + chr5_4:59450888-59450907 Msa0860620:CDS 35.0%
AACTTGATCATACCGTGAAT+TGG - chr5_4:59450976-59450995 None:intergenic 35.0%
GAGTTAGATATTGATCAGGA+TGG - chr5_4:59451214-59451233 None:intergenic 35.0%
TATGTGCAGTTACAGAAAAC+AGG - chr5_4:59451249-59451268 None:intergenic 35.0%
! GTAATGTTTTCCGATACCTT+TGG + chr5_4:59451502-59451521 Msa0860620:intron 35.0%
ACACAATGAAACAACTTGGT+AGG - chr5_4:59451592-59451611 None:intergenic 35.0%
ATCCATAAGGCCAACTAAAA+AGG + chr5_4:59451741-59451760 Msa0860620:CDS 35.0%
!!! TACCTTTTTAGTTGGCCTTA+TGG - chr5_4:59451746-59451765 None:intergenic 35.0%
TGTGACCAACTAGAATTACA+TGG - chr5_4:59451869-59451888 None:intergenic 35.0%
CGTTAAATTTCAGATAGAGC+TGG + chr5_4:59452293-59452312 Msa0860620:intron 35.0%
!!! ACGAGTTTTGAAGGAAACAA+AGG - chr5_4:59452364-59452383 None:intergenic 35.0%
TTGTTTCCTTCAAAACTCGT+TGG + chr5_4:59452364-59452383 Msa0860620:CDS 35.0%
TGTTTCCTTCAAAACTCGTT+GGG + chr5_4:59452365-59452384 Msa0860620:CDS 35.0%
CATTCAGTCAACCATATTGT+TGG - chr5_4:59452429-59452448 None:intergenic 35.0%
CAACAATATGGTTGACTGAA+TGG + chr5_4:59452427-59452446 Msa0860620:CDS 35.0%
TGTTATCCCAGTATATGTCA+CGG - chr5_4:59452464-59452483 None:intergenic 35.0%
TGACATATACTGGGATAACA+TGG + chr5_4:59452464-59452483 Msa0860620:CDS 35.0%
! CAGTCACTTGCTAATATAGA+AGG + chr5_4:59452582-59452601 Msa0860620:CDS 35.0%
!! TCAATAATGGACTTGAGGAA+TGG - chr5_4:59452624-59452643 None:intergenic 35.0%
TCAATGTAGTCCTACACATA+GGG - chr5_4:59452982-59453001 None:intergenic 35.0%
TGGAAGTTTATGTCTTTCAC+TGG + chr5_4:59453207-59453226 Msa0860620:intron 35.0%
! CTTTGATAACTGTCTATCCA+TGG + chr5_4:59453275-59453294 Msa0860620:intron 35.0%
TTTATACAAGGTTTCCTTCC+TGG + chr5_4:59453348-59453367 Msa0860620:CDS 35.0%
TTATACAAGGTTTCCTTCCT+GGG + chr5_4:59453349-59453368 Msa0860620:CDS 35.0%
ACTTATAAACCCTTCGAACT+TGG - chr5_4:59453427-59453446 None:intergenic 35.0%
GTTTATAAGTCAGTCTTCTC+TGG + chr5_4:59453437-59453456 Msa0860620:CDS 35.0%
CTGGAAGATGTAATATCTTG+AGG - chr5_4:59453475-59453494 None:intergenic 35.0%
CCAGAAACACATTAATGAAC+TGG - chr5_4:59453494-59453513 None:intergenic 35.0%
CCAGTTCATTAATGTGTTTC+TGG + chr5_4:59453491-59453510 Msa0860620:CDS 35.0%
TGCAGAATTCCAAAGACAAT+TGG + chr5_4:59453710-59453729 Msa0860620:intron 35.0%
ATCGAAACACCAATTGTCTT+TGG - chr5_4:59453722-59453741 None:intergenic 35.0%
!! CATACATAATGGTTGATGGA+TGG + chr5_4:59453768-59453787 Msa0860620:CDS 35.0%
AGCTAATGTTTACCTGATGA+CGG - chr5_4:59454033-59454052 None:intergenic 35.0%
!! GAAAAGCATCAAAACAGCAA+AGG - chr5_4:59454063-59454082 None:intergenic 35.0%
! CAACATAGCACTCATTTTCA+TGG - chr5_4:59454115-59454134 None:intergenic 35.0%
ATGTTGTGTGTGTACAACTT+TGG + chr5_4:59454129-59454148 Msa0860620:intron 35.0%
ATGCAAATACAATACGTCCA+TGG - chr5_4:59454315-59454334 None:intergenic 35.0%
TGTCTCACAACTTCTGTTAA+TGG + chr5_4:59454339-59454358 Msa0860620:CDS 35.0%
GTCTCACAACTTCTGTTAAT+GGG + chr5_4:59454340-59454359 Msa0860620:CDS 35.0%
AATGGATGAGTAGTAAAAGC+AGG - chr5_4:59454466-59454485 None:intergenic 35.0%
GATGGATATATGCATCATAG+AGG - chr5_4:59454730-59454749 None:intergenic 35.0%
! TCTCCATCATCTTTGAAAAC+GGG - chr5_4:59454752-59454771 None:intergenic 35.0%
! GTCTCCATCATCTTTGAAAA+CGG - chr5_4:59454753-59454772 None:intergenic 35.0%
!!! CGTTTTGTTTGGACAATTAC+CGG - chr5_4:59454815-59454834 None:intergenic 35.0%
TCTATAGACAGATTGAAGGT+TGG + chr5_4:59455013-59455032 Msa0860620:three_prime_UTR 35.0%
GACAGATAAGAGCAATATTC+AGG + chr5_4:59455124-59455143 Msa0860620:three_prime_UTR 35.0%
TCTGCTCATTCTCAAGATTT+CGG - chr5_4:59455279-59455298 None:intergenic 35.0%
AGATTGAAGTACAGACACAT+CGG + chr5_4:59455296-59455315 Msa0860620:three_prime_UTR 35.0%
CACAAAGGGTTGTTGCAAAT+TGG + chr5_4:59448822-59448841 Msa0860620:intron 40.0%
CTGAGCTAGATGATGTGAAA+AGG + chr5_4:59448918-59448937 Msa0860620:intron 40.0%
TCAAAGAACATGGCTTCACT+TGG + chr5_4:59449253-59449272 Msa0860620:exon 40.0%
TACTGGCATTTGCCATACTT+CGG + chr5_4:59449326-59449345 Msa0860620:CDS 40.0%
TTTCCGAAATGGTATCTGAG+GGG + chr5_4:59449376-59449395 Msa0860620:CDS 40.0%
AAACCCCTCAGATACCATTT+CGG - chr5_4:59449382-59449401 None:intergenic 40.0%
AATGGTATCTGAGGGGTTTA+AGG + chr5_4:59449383-59449402 Msa0860620:CDS 40.0%
! TGTTCAATTAGTTCGGGTTC+CGG - chr5_4:59449511-59449530 None:intergenic 40.0%
CCTGCATGTTCAATTAGTTC+GGG - chr5_4:59449517-59449536 None:intergenic 40.0%
GCCTGCATGTTCAATTAGTT+CGG - chr5_4:59449518-59449537 None:intergenic 40.0%
ACTAATTGAACATGCAGGCT+TGG + chr5_4:59449519-59449538 Msa0860620:CDS 40.0%
TGGATTCTGCTGTATACTTG+AGG + chr5_4:59449539-59449558 Msa0860620:CDS 40.0%
ACTTGAGGATCTACTTACTC+GGG + chr5_4:59449554-59449573 Msa0860620:CDS 40.0%
GGACCATAACAGAAAATGCT+AGG - chr5_4:59450402-59450421 None:intergenic 40.0%
! GTGTCATTAGTCCAATTGAC+AGG - chr5_4:59450424-59450443 None:intergenic 40.0%
CACCTTGAAACGTTCAAATG+TGG + chr5_4:59450441-59450460 Msa0860620:CDS 40.0%
ACGTACCTATTTGATCCTAG+TGG - chr5_4:59450505-59450524 None:intergenic 40.0%
! TTGCAGATTTTGGACTCACT+TGG + chr5_4:59450841-59450860 Msa0860620:intron 40.0%
! TGGCTTATGCTTTTACCTTC+TGG + chr5_4:59450867-59450886 Msa0860620:CDS 40.0%
CAAGATATAGCATGTCCAGA+AGG - chr5_4:59450885-59450904 None:intergenic 40.0%
! ATTGCTTGAAGAAGGAGCAT+GGG - chr5_4:59451099-59451118 None:intergenic 40.0%
AATTGCTTGAAGAAGGAGCA+TGG - chr5_4:59451100-59451119 None:intergenic 40.0%
GCACAGTAATTGCTTGAAGA+AGG - chr5_4:59451107-59451126 None:intergenic 40.0%
CAATTACTGTGCATTTGTGC+AGG + chr5_4:59451115-59451134 Msa0860620:intron 40.0%
CATTTGTGCAGGTACTTGTT+AGG + chr5_4:59451126-59451145 Msa0860620:intron 40.0%
GTTCATAGAGACAGGATTAC+TGG - chr5_4:59451777-59451796 None:intergenic 40.0%
! GATTTGGAGTTCATAGAGAC+AGG - chr5_4:59451785-59451804 None:intergenic 40.0%
! TAGAATTACATGGTGCCAGA+GGG - chr5_4:59451859-59451878 None:intergenic 40.0%
TGGCACCATGTAATTCTAGT+TGG + chr5_4:59451861-59451880 Msa0860620:intron 40.0%
!!! ACTGGCTTTTTAGGTCTTTG+TGG + chr5_4:59451901-59451920 Msa0860620:CDS 40.0%
GATAGAGCTGGAGAAAGATA+AGG + chr5_4:59452305-59452324 Msa0860620:intron 40.0%
GTTTCCTTCAAAACTCGTTG+GGG + chr5_4:59452366-59452385 Msa0860620:CDS 40.0%
TTATCCCAGTATATGTCACG+GGG - chr5_4:59452462-59452481 None:intergenic 40.0%
GTTATCCCAGTATATGTCAC+GGG - chr5_4:59452463-59452482 None:intergenic 40.0%
AGTGACTGTACGAATGCAAT+GGG - chr5_4:59452570-59452589 None:intergenic 40.0%
AAGTGACTGTACGAATGCAA+TGG - chr5_4:59452571-59452590 None:intergenic 40.0%
AATAGCTTGAACAACCCATC+TGG + chr5_4:59452772-59452791 Msa0860620:intron 40.0%
ATAGCTTGAACAACCCATCT+GGG + chr5_4:59452773-59452792 Msa0860620:intron 40.0%
GTCAATGTAGTCCTACACAT+AGG - chr5_4:59452983-59453002 None:intergenic 40.0%
GATTACATCACGGAATATGC+TGG + chr5_4:59453187-59453206 Msa0860620:intron 40.0%
AATAGCTTCAAAGCAATCCC+AGG - chr5_4:59453369-59453388 None:intergenic 40.0%
ATGATCATGTCCAAGTTCGA+AGG + chr5_4:59453414-59453433 Msa0860620:CDS 40.0%
TGATCATGTCCAAGTTCGAA+GGG + chr5_4:59453415-59453434 Msa0860620:CDS 40.0%
! TTTCTGGGGAGCATAATTAC+CGG + chr5_4:59453507-59453526 Msa0860620:CDS 40.0%
!! GATGTGCTGGTGAGATTTTA+AGG + chr5_4:59453795-59453814 Msa0860620:CDS 40.0%
AAAAGACCGTGAAGAAGCAA+TGG + chr5_4:59453871-59453890 Msa0860620:CDS 40.0%
GTATTGAAACCAATAGTCCC+AGG - chr5_4:59453899-59453918 None:intergenic 40.0%
!! GGGACTATTGGTTTCAATAC+AGG + chr5_4:59453899-59453918 Msa0860620:CDS 40.0%
ATATCTTGTCTACCGTCATC+AGG + chr5_4:59454018-59454037 Msa0860620:CDS 40.0%
! AACCAAGAATATGAGAGTGC+TGG + chr5_4:59454271-59454290 Msa0860620:CDS 40.0%
!! CTCTCCCAGTTTTGACAATA+TGG + chr5_4:59454410-59454429 Msa0860620:CDS 40.0%
!!! ATGGTTTCATCGGTTTTGCA+AGG + chr5_4:59454429-59454448 Msa0860620:CDS 40.0%
!!! TGGTTTCATCGGTTTTGCAA+GGG + chr5_4:59454430-59454449 Msa0860620:CDS 40.0%
! TTTTTGTGGTGCGTGAACTT+AGG + chr5_4:59454643-59454662 Msa0860620:intron 40.0%
AGCAATGGTCAAAGACACAT+TGG + chr5_4:59454667-59454686 Msa0860620:CDS 40.0%
! CATCATCTTTGAAAACGGGA+TGG - chr5_4:59454748-59454767 None:intergenic 40.0%
! CATCCCGTTTTCAAAGATGA+TGG + chr5_4:59454746-59454765 Msa0860620:CDS 40.0%
TCATTACAAGCCTCTATGCA+TGG + chr5_4:59454881-59454900 Msa0860620:CDS 40.0%
ATCAGTAATGCCATGCATAG+AGG - chr5_4:59454894-59454913 None:intergenic 40.0%
CTTAATGACAAGTGCATGGT+TGG + chr5_4:59454979-59454998 Msa0860620:three_prime_UTR 40.0%
TTAGTTCAACGCTCAAGCAG+GGG - chr5_4:59448422-59448441 None:intergenic 45.0%
GTTAGTTCAACGCTCAAGCA+GGG - chr5_4:59448423-59448442 None:intergenic 45.0%
TGTTAGTTCAACGCTCAAGC+AGG - chr5_4:59448424-59448443 None:intergenic 45.0%
ATGGCTTCACTTGGCGATAT+AGG + chr5_4:59449262-59449281 Msa0860620:CDS 45.0%
CCCGAACTAATTGAACATGC+AGG + chr5_4:59449514-59449533 Msa0860620:CDS 45.0%
CTGTTATGGTCCCTGTCAAT+TGG + chr5_4:59450410-59450429 Msa0860620:CDS 45.0%
ATACCGTGAATTGGTCAGGA+CGG - chr5_4:59450967-59450986 None:intergenic 45.0%
GATCATACCGTGAATTGGTC+AGG - chr5_4:59450971-59450990 None:intergenic 45.0%
! TTGCTTGAAGAAGGAGCATG+GGG - chr5_4:59451098-59451117 None:intergenic 45.0%
! ACTGATTCATCAGCATCAGG+CGG - chr5_4:59451158-59451177 None:intergenic 45.0%
! CTGACTGATTCATCAGCATC+AGG - chr5_4:59451161-59451180 None:intergenic 45.0%
CCAGATGAAGAGAGGCAATT+AGG - chr5_4:59451272-59451291 None:intergenic 45.0%
CCTAATTGCCTCTCTTCATC+TGG + chr5_4:59451269-59451288 Msa0860620:intron 45.0%
TACAAGCTCCAGATGAAGAG+AGG - chr5_4:59451280-59451299 None:intergenic 45.0%
CTATTTCCCTTTCTTCCCTC+TGG + chr5_4:59451841-59451860 Msa0860620:intron 45.0%
! CTAGAATTACATGGTGCCAG+AGG - chr5_4:59451860-59451879 None:intergenic 45.0%
!!! TGCTTGCAGACTGGCTTTTT+AGG + chr5_4:59451892-59451911 Msa0860620:intron 45.0%
AGGTCTTTGTGGCAGTAAAG+TGG + chr5_4:59451912-59451931 Msa0860620:CDS 45.0%
CAGTGCATGCTTCTCCAAAT+TGG + chr5_4:59452180-59452199 Msa0860620:intron 45.0%
! AATGGACTTGAGGAATGGTG+CGG - chr5_4:59452619-59452638 None:intergenic 45.0%
!! GAGGAGCAAACTCTAAGGTA+AGG - chr5_4:59452824-59452843 None:intergenic 45.0%
CTTGAGAGGAGCAAACTCTA+AGG - chr5_4:59452829-59452848 None:intergenic 45.0%
! CTTAGAGTTTGCTCCTCTCA+AGG + chr5_4:59452827-59452846 Msa0860620:intron 45.0%
! ATTCTCCCTGGTGCTAAGTT+TGG + chr5_4:59452861-59452880 Msa0860620:intron 45.0%
! TTCTGGGGAGCATAATTACC+GGG + chr5_4:59453508-59453527 Msa0860620:CDS 45.0%
TAGTTGTTGGAATGCAGTCC+CGG - chr5_4:59453529-59453548 None:intergenic 45.0%
!! ATAATGGTTGATGGATGGGC+AGG + chr5_4:59453773-59453792 Msa0860620:CDS 45.0%
CAGGATCCATTGCTTCTTCA+CGG - chr5_4:59453880-59453899 None:intergenic 45.0%
GTGAAGAAGCAATGGATCCT+GGG + chr5_4:59453879-59453898 Msa0860620:CDS 45.0%
GTGTGACTACAGCATACACA+AGG - chr5_4:59453958-59453977 None:intergenic 45.0%
CTCCAGCACTCTCATATTCT+TGG - chr5_4:59454276-59454295 None:intergenic 45.0%
ACAATACGTCCATGGACATC+AGG - chr5_4:59454307-59454326 None:intergenic 45.0%
TGCGTGAACTTAGGAAGCAA+TGG + chr5_4:59454652-59454671 Msa0860620:intron 45.0%
GTGATGTGATGAGTCAAGAG+TGG + chr5_4:59454780-59454799 Msa0860620:CDS 45.0%
TGTGATGAGTCAAGAGTGGA+AGG + chr5_4:59454784-59454803 Msa0860620:CDS 45.0%
GTCAAGGACTAAGTTCGTGT+TGG + chr5_4:59454954-59454973 Msa0860620:three_prime_UTR 45.0%
GGAGCTTAATGACAAGTGCA+TGG + chr5_4:59454975-59454994 Msa0860620:three_prime_UTR 45.0%
GACGGTGAAATCACTCATAG+CGG + chr5_4:59455223-59455242 Msa0860620:three_prime_UTR 45.0%
CATAACATCGACCATCCTTG+TGG - chr5_4:59455252-59455271 None:intergenic 45.0%
CACAAGGATGGTCGATGTTA+TGG + chr5_4:59455250-59455269 Msa0860620:three_prime_UTR 45.0%
TTAAGGTCCAGTCCACTGCA+AGG + chr5_4:59449400-59449419 Msa0860620:CDS 50.0%
! TGCTTGAAGAAGGAGCATGG+GGG - chr5_4:59451097-59451116 None:intergenic 50.0%
! ATGGTGCCAGAGGGAAGAAA+GGG - chr5_4:59451850-59451869 None:intergenic 50.0%
GTCACATTGTGCTTGCAGAC+TGG + chr5_4:59451883-59451902 Msa0860620:intron 50.0%
!! AGCACCCCAACGAGTTTTGA+AGG - chr5_4:59452373-59452392 None:intergenic 50.0%
AGAGCCCCGTGACATATACT+GGG + chr5_4:59452455-59452474 Msa0860620:CDS 50.0%
CTTGAACAACCCATCTGGGT+TGG + chr5_4:59452777-59452796 Msa0860620:intron 50.0%
!! TTGGTCTCGTGGTGTTGACT+TGG + chr5_4:59452796-59452815 Msa0860620:intron 50.0%
!! TGGTCTCGTGGTGTTGACTT+GGG + chr5_4:59452797-59452816 Msa0860620:intron 50.0%
TTTGCTCCTCTCAAGGTCTC+AGG + chr5_4:59452834-59452853 Msa0860620:intron 50.0%
ATCGAACCTGAGACCTTGAG+AGG - chr5_4:59452843-59452862 None:intergenic 50.0%
! TCCCTGGTGCTAAGTTTGGT+GGG + chr5_4:59452865-59452884 Msa0860620:intron 50.0%
GCTTCAAAGCAATCCCAGGA+AGG - chr5_4:59453365-59453384 None:intergenic 50.0%
CGTGAAGAAGCAATGGATCC+TGG + chr5_4:59453878-59453897 Msa0860620:CDS 50.0%
GCAATGGATCCTGGGACTAT+TGG + chr5_4:59453887-59453906 Msa0860620:CDS 50.0%
!! ATGAGAGTGCTGGAGCATTC+TGG + chr5_4:59454281-59454300 Msa0860620:CDS 50.0%
ACTGGGAGAGCGATGAGTAA+TGG - chr5_4:59454400-59454419 None:intergenic 50.0%
TCAAGAGTGGAAGGAAGAGC+CGG + chr5_4:59454793-59454812 Msa0860620:CDS 50.0%
TCCAAACAAAACGCCAGTCG+CGG + chr5_4:59454822-59454841 Msa0860620:CDS 50.0%
! CCACTATGTTTGCTAGGCAC+AGG - chr5_4:59454857-59454876 None:intergenic 50.0%
CCTGTGCCTAGCAAACATAG+TGG + chr5_4:59454854-59454873 Msa0860620:CDS 50.0%
GTGCCTAGCAAACATAGTGG+TGG + chr5_4:59454857-59454876 Msa0860620:CDS 50.0%
GAGCCACCACTATGTTTGCT+AGG - chr5_4:59454863-59454882 None:intergenic 50.0%
ACAAATGCCCCTCCTTGCAG+TGG - chr5_4:59449415-59449434 None:intergenic 55.0%
GCCTGCTGCATTGCAAATGC+CGG + chr5_4:59449489-59449508 Msa0860620:CDS 55.0%
TCCGGCATTTGCAATGCAGC+AGG - chr5_4:59449493-59449512 None:intergenic 55.0%
ACGCCGTCCTGACCAATTCA+CGG + chr5_4:59450961-59450980 Msa0860620:CDS 55.0%
! CATGGTGCCAGAGGGAAGAA+AGG - chr5_4:59451851-59451870 None:intergenic 55.0%
CAGTATATGTCACGGGGCTC+TGG - chr5_4:59452456-59452475 None:intergenic 55.0%
CAGAGCCCCGTGACATATAC+TGG + chr5_4:59452454-59452473 Msa0860620:CDS 55.0%
ACCACGAGACCAACCCAGAT+GGG - chr5_4:59452789-59452808 None:intergenic 55.0%
GTCTCAGGTTCGATTCTCCC+TGG + chr5_4:59452849-59452868 Msa0860620:intron 55.0%
! CTCCCTGGTGCTAAGTTTGG+TGG + chr5_4:59452864-59452883 Msa0860620:intron 55.0%
GCCCACCAAACTTAGCACCA+GGG - chr5_4:59452869-59452888 None:intergenic 55.0%
AGCCCACCAAACTTAGCACC+AGG - chr5_4:59452870-59452889 None:intergenic 55.0%
GCATTCTGGCCTGATGTCCA+TGG + chr5_4:59454295-59454314 Msa0860620:CDS 55.0%
!! TCCGCGACTGGCGTTTTGTT+TGG - chr5_4:59454826-59454845 None:intergenic 55.0%
! CACTCATAGCGGAGACCACA+AGG + chr5_4:59455234-59455253 Msa0860620:three_prime_UTR 55.0%
! CATAGCGGAGACCACAAGGA+TGG + chr5_4:59455238-59455257 Msa0860620:three_prime_UTR 55.0%
AGGTCCAGTCCACTGCAAGG+AGG + chr5_4:59449403-59449422 Msa0860620:CDS 60.0%
GGTCCAGTCCACTGCAAGGA+GGG + chr5_4:59449404-59449423 Msa0860620:CDS 60.0%
GTCCAGTCCACTGCAAGGAG+GGG + chr5_4:59449405-59449424 Msa0860620:CDS 60.0%
!! ACCCATCTGGGTTGGTCTCG+TGG + chr5_4:59452785-59452804 Msa0860620:intron 60.0%
CACCACGAGACCAACCCAGA+TGG - chr5_4:59452790-59452809 None:intergenic 60.0%
GATGGATGGGCAGGATGTGC+TGG + chr5_4:59453782-59453801 Msa0860620:CDS 60.0%
CAGGTGTGTTCTTCCGCGAC+TGG - chr5_4:59454838-59454857 None:intergenic 60.0%
TGCCCCTCCTTGCAGTGGAC+TGG - chr5_4:59449410-59449429 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 59448357 59455320 59448357 ID=Msa0860620;Name=Msa0860620
chr5_4 mRNA 59448357 59455320 59448357 ID=Msa0860620-mRNA-1;Parent=Msa0860620;Name=Msa0860620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=244|1|1|1|0.90|0.83|12|401|766
chr5_4 exon 59448357 59448576 59448357 ID=Msa0860620-mRNA-1:exon:18225;Parent=Msa0860620-mRNA-1
chr5_4 exon 59449238 59449575 59449238 ID=Msa0860620-mRNA-1:exon:18226;Parent=Msa0860620-mRNA-1
chr5_4 exon 59450372 59450518 59450372 ID=Msa0860620-mRNA-1:exon:18227;Parent=Msa0860620-mRNA-1
chr5_4 exon 59450847 59450982 59450847 ID=Msa0860620-mRNA-1:exon:18228;Parent=Msa0860620-mRNA-1
chr5_4 exon 59451137 59451238 59451137 ID=Msa0860620-mRNA-1:exon:18229;Parent=Msa0860620-mRNA-1
chr5_4 exon 59451643 59451762 59451643 ID=Msa0860620-mRNA-1:exon:18230;Parent=Msa0860620-mRNA-1
chr5_4 exon 59451901 59451981 59451901 ID=Msa0860620-mRNA-1:exon:18231;Parent=Msa0860620-mRNA-1
chr5_4 exon 59452306 59452646 59452306 ID=Msa0860620-mRNA-1:exon:18232;Parent=Msa0860620-mRNA-1
chr5_4 exon 59453332 59453577 59453332 ID=Msa0860620-mRNA-1:exon:18233;Parent=Msa0860620-mRNA-1
chr5_4 exon 59453715 59454039 59453715 ID=Msa0860620-mRNA-1:exon:18234;Parent=Msa0860620-mRNA-1
chr5_4 exon 59454256 59454489 59454256 ID=Msa0860620-mRNA-1:exon:18235;Parent=Msa0860620-mRNA-1
chr5_4 exon 59454665 59455320 59454665 ID=Msa0860620-mRNA-1:exon:18236;Parent=Msa0860620-mRNA-1
chr5_4 five_prime_UTR 59448357 59448576 59448357 ID=Msa0860620-mRNA-1:five_prime_utr;Parent=Msa0860620-mRNA-1
chr5_4 five_prime_UTR 59449238 59449261 59449238 ID=Msa0860620-mRNA-1:five_prime_utr;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59449262 59449575 59449262 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59450372 59450518 59450372 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59450847 59450982 59450847 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59451137 59451238 59451137 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59451643 59451762 59451643 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59451901 59451981 59451901 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59452306 59452646 59452306 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59453332 59453577 59453332 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59453715 59454039 59453715 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59454256 59454489 59454256 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 CDS 59454665 59454919 59454665 ID=Msa0860620-mRNA-1:cds;Parent=Msa0860620-mRNA-1
chr5_4 three_prime_UTR 59454920 59455320 59454920 ID=Msa0860620-mRNA-1:three_prime_utr;Parent=Msa0860620-mRNA-1
Gene Sequence

>Msa0860620

ATGGCTTCACTTGGCGATATAGGACTTGCAGCTGCAATCAACATCCTTACTGCATTTGCATTCTTACTGGCATTTGCCATACTTCGGATTCAACCTATAAACGATAGGGTGTATTTTCCGAAATGGTATCTGAGGGGTTTAAGGTCCAGTCCACTGCAAGGAGGGGCATTTGTGAGCAAATTTGTCAATATAGACTTCAGGTCATACATAAGGTTCTTGAACTGGATGCCTGCTGCATTGCAAATGCCGGAACCCGAACTAATTGAACATGCAGGCTTGGATTCTGCTGTATACTTGAGGATCTACTTACTCGGGCTGAAAATATTTGTCCCCATTTCACTCCTAGCATTTTCTGTTATGGTCCCTGTCAATTGGACTAATGACACCTTGAAACGTTCAAATGTGGTTTATAGCAGCATCGATAAGCTTTCAATTTCAAATATTCCACTAGGATCAAATAGATTTTGGACTCACTTGGTAATGGCTTATGCTTTTACCTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCAGCAATGAGATTGTCTTTTCTTGCATCTGAAAGACGCCGTCCTGACCAATTCACGGTACTTGTTAGGAATGTACCGCCTGATGCTGATGAATCAGTCAGTGAGCTAGTTGAACATTTCTTTTTGGTGAACCATCCTGATCAATATCTAACTCATCAGGTTGTTTACGATGCAAAGAAACTCTCTAGTCTAGTTGCTAAGAAGAAGAAAAAACAGAATTGGCTTGACTACTATGAACTTAAATATTCTAGAAACGAATCCATAAGGCCAACTAAAAAGACTGGCTTTTTAGGTCTTTGTGGCAGTAAAGTGGATGCTATTGATTTTTATACTGCTGCAATTGAGAGACTATCAAGAGACATAGAGCTGGAGAAAGATAAGGTGACAAAGAATCCTAAATCTATAATGCCAGCAGCCTTTGTTTCCTTCAAAACTCGTTGGGGTGCTGCAGTTTGTGCACAAACTCAACAAACTAGAAATCCAACAATATGGTTGACTGAATGGGCTCCAGAGCCCCGTGACATATACTGGGATAACATGGCTATACCATATGTTTCTCTCTCAATAAGGAGACTTGTAATTGGTGTTGCGTTCTTCTTTCTTACATTCTTTTTCATGATTCCCATTGCATTCGTACAGTCACTTGCTAATATAGAAGGCATTGAAAAAGCCGCACCATTCCTCAAGTCCATTATTGAAATCGACATCATCAAGTCTTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAAGCTATTCCTCATTTTTTTGCCAACAATATTGATGATCATGTCCAAGTTCGAAGGGTTTATAAGTCAGTCTTCTCTGGAAAGAAGATGCGCCTCAAGATATTACATCTTCCAGTTCATTAATGTGTTTCTGGGGAGCATAATTACCGGGACTGCATTCCAACAACTAGATAAATTCATTCATCAGTCTGCAAATGAAATTCCAAAGACAATTGGTGTTTCGATTCCAATGAAAGCAACTTTCTTCATAACATACATAATGGTTGATGGATGGGCAGGATGTGCTGGTGAGATTTTAAGGTTGAAGCCTTTGATATTTTATCACTTAAAGAATTTCTTGTTGGTGAAGACTGAAAAAGACCGTGAAGAAGCAATGGATCCTGGGACTATTGGTTTCAATACAGGAGAACCTCAGATACAACTTTATTTCTTGCTTGGCCTTGTGTATGCTGTAGTCACACCATTTCTACTTCCATACATCATTGTCTTTTTTGGTTTGGCATATCTTGTCTACCGTCATCAGATTATAAACGTGTACAACCAAGAATATGAGAGTGCTGGAGCATTCTGGCCTGATGTCCATGGACGTATTGTATTTGCATTAGTTGTCTCACAACTTCTGTTAATGGGATTATTGAGTACAAAAGAAGCTGCTAATTCGACTCCATTACTCATCGCTCTCCCAGTTTTGACAATATGGTTTCATCGGTTTTGCAAGGGAAGCTACGAACCTGCTTTTACTACTCATCCATTACAGGAAGCAATGGTCAAAGACACATTGGAGCGTACTAAAGAGCCAAACTTCAATTTGAAAGATTTCCTCTATGATGCATATATCCATCCCGTTTTCAAAGATGATGGAGACACAGACAGTGATGTGATGAGTCAAGAGTGGAAGGAAGAGCCGGTAATTGTCCAAACAAAACGCCAGTCGCGGAAGAACACACCTGTGCCTAGCAAACATAGTGGTGGCTCATTACAAGCCTCTATGCATGGCATTACTGATGTCTGA

Protein sequence

>Msa0860620

MASLGDIGLAAAINILTAFAFLLAFAILRIQPINDRVYFPKWYLRGLRSSPLQGGAFVSKFVNIDFRSYIRFLNWMPAALQMPEPELIEHAGLDSAVYLRIYLLGLKIFVPISLLAFSVMVPVNWTNDTLKRSNVVYSSIDKLSISNIPLGSNRFWTHLVMAYAFTFWTCYILKREYQIVAAMRLSFLASERRRPDQFTVLVRNVPPDADESVSELVEHFFLVNHPDQYLTHQVVYDAKKLSSLVAKKKKKQNWLDYYELKYSRNESIRPTKKTGFLGLCGSKVDAIDFYTAAIERLSRDIELEKDKVTKNPKSIMPAAFVSFKTRWGAAVCAQTQQTRNPTIWLTEWAPEPRDIYWDNMAIPYVSLSIRRLVIGVAFFFLTFFFMIPIAFVQSLANIEGIEKAAPFLKSIIEIDIIKSFIQGFLPGIALKLFLIFLPTILMIMSKFEGFISQSSLERRCASRYYIFQFINVFLGSIITGTAFQQLDKFIHQSANEIPKTIGVSIPMKATFFITYIMVDGWAGCAGEILRLKPLIFYHLKNFLLVKTEKDREEAMDPGTIGFNTGEPQIQLYFLLGLVYAVVTPFLLPYIIVFFGLAYLVYRHQIINVYNQEYESAGAFWPDVHGRIVFALVVSQLLLMGLLSTKEAANSTPLLIALPVLTIWFHRFCKGSYEPAFTTHPLQEAMVKDTLERTKEPNFNLKDFLYDAYIHPVFKDDGDTDSDVMSQEWKEEPVIVQTKRQSRKNTPVPSKHSGGSLQASMHGITDV*