AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1279680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279680 MtrunA17_Chr5g0426551 99.615 260 1 0 1 260 1 260 0.0 532
Msa1279680 MtrunA17_Chr3g0132301 90.385 260 25 0 1 260 1 260 9.36e-177 486
Msa1279680 MtrunA17_Chr3g0133161 75.949 237 56 1 8 243 11 247 1.98e-135 382
Msa1279680 MtrunA17_Chr2g0325591 72.016 243 66 1 8 250 7 247 7.25e-129 365
Msa1279680 MtrunA17_Chr2g0283791 69.020 255 72 3 6 256 3 254 4.36e-126 358
Msa1279680 MtrunA17_Chr8g0379011 71.967 239 65 1 8 246 7 243 1.50e-125 356
Msa1279680 MtrunA17_Chr5g0418971 70.325 246 71 1 3 248 2 245 1.71e-124 354
Msa1279680 MtrunA17_Chr2g0316011 66.154 260 85 2 1 259 1 258 8.43e-124 353
Msa1279680 MtrunA17_Chr4g0043141 64.017 239 65 2 27 246 1 237 1.15e-105 306
Msa1279680 MtrunA17_Chr1g0164601 58.723 235 91 4 8 240 11 241 7.81e-91 269
Msa1279680 MtrunA17_Chr3g0082111 58.298 235 92 4 8 240 41 271 5.11e-90 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1279680 AT1G78300.1 90.157 254 24 1 8 260 5 258 1.78e-169 468
Msa1279680 AT1G35160.1 85.985 264 33 2 1 260 1 264 1.87e-167 464
Msa1279680 AT4G09000.1 88.933 253 26 1 1 251 1 253 2.54e-166 461
Msa1279680 AT1G35160.2 77.740 292 33 3 1 260 1 292 3.52e-161 449
Msa1279680 AT4G09000.2 89.344 244 24 1 1 242 1 244 2.71e-160 447
Msa1279680 AT5G38480.1 81.496 254 46 1 6 258 2 255 3.30e-154 429
Msa1279680 AT3G02520.1 80.784 255 48 1 6 259 3 257 1.34e-152 426
Msa1279680 AT3G02520.2 80.784 255 48 1 6 259 3 257 1.34e-152 426
Msa1279680 AT5G38480.3 81.496 254 45 2 6 258 2 254 1.02e-151 423
Msa1279680 AT5G38480.2 81.496 254 45 2 6 258 2 254 1.02e-151 423
Msa1279680 AT5G10450.2 79.508 244 49 1 4 246 3 246 3.72e-145 406
Msa1279680 AT5G10450.1 79.668 241 48 1 4 243 3 243 8.60e-145 405
Msa1279680 AT5G10450.4 77.510 249 55 1 4 251 3 251 8.93e-145 406
Msa1279680 AT5G10450.3 80.000 240 47 1 4 242 3 242 5.64e-144 404
Msa1279680 AT5G16050.1 79.310 261 50 2 3 260 2 261 3.35e-143 402
Msa1279680 AT5G16050.2 79.310 261 50 2 3 260 2 261 3.35e-143 402
Msa1279680 AT5G65430.2 78.138 247 52 2 1 246 1 246 2.19e-142 399
Msa1279680 AT5G65430.1 78.279 244 51 2 1 243 1 243 6.17e-142 398
Msa1279680 AT5G65430.3 78.601 243 50 2 1 242 1 242 2.83e-141 397
Msa1279680 AT1G26480.1 74.180 244 60 3 8 250 10 251 7.56e-129 366
Msa1279680 AT2G42590.3 70.539 241 69 1 8 248 7 245 3.36e-122 349
Msa1279680 AT2G42590.1 70.539 241 69 1 8 248 7 245 3.39e-122 349
Msa1279680 AT2G42590.2 70.833 240 68 1 8 247 7 244 9.15e-122 348
Msa1279680 AT1G34760.2 71.008 238 67 1 8 245 5 240 3.80e-121 346
Msa1279680 AT1G34760.1 71.008 238 67 1 8 245 5 240 4.76e-121 346
Msa1279680 AT1G22300.2 68.254 252 73 2 8 259 5 249 6.77e-117 335
Msa1279680 AT1G22300.1 68.254 252 73 2 8 259 5 249 6.77e-117 335
Msa1279680 AT1G22300.3 69.874 239 70 1 8 246 5 241 1.40e-115 332
Msa1279680 AT1G78220.1 48.927 233 116 2 8 239 5 235 1.31e-73 225
Msa1279680 AT1G22290.2 45.933 209 91 6 12 217 9 198 4.64e-48 159
Msa1279680 AT1G22290.1 45.631 206 90 6 12 214 9 195 6.36e-48 157
Msa1279680 AT2G10450.1 71.429 49 14 0 207 255 16 64 7.81e-18 76.3

Find 78 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTGTAAAAGATGAATT+TGG 0.144512 8_3:+17113093 Msa1279680:five_prime_UTR
ATGGCAAATCCGTACAAATT+TGG 0.171832 8_3:+17113179 Msa1279680:five_prime_UTR
TTCAAATTCAAATGTATAAA+TGG 0.227294 8_3:+17113160 Msa1279680:five_prime_UTR
TGCTGCTTCTGGTGATTCTA+AGG 0.228252 8_3:+17113740 Msa1279680:CDS
AAGAATACCGTTACAGATAT+TGG 0.234430 8_3:-17113688 None:intergenic
TACTGCTCATCGGCGCCTTT+TGG 0.244944 8_3:-17115398 None:intergenic
TGGCAAATCCGTACAAATTT+GGG 0.259825 8_3:+17113180 Msa1279680:five_prime_UTR
TTGATTCCTTCTGCTGCTTC+TGG 0.276388 8_3:+17113729 Msa1279680:CDS
CGATGAGGCTATTGCTGAAT+TGG 0.295305 8_3:+17115157 Msa1279680:CDS
AATTGAAGAACAAACTAAAA+TGG 0.306511 8_3:-17115564 None:intergenic
CGAAGAGATGGTCGATTTCA+TGG 0.314624 8_3:+17113461 Msa1279680:CDS
AAATTTCTATCATATGAAAT+TGG 0.325146 8_3:+17115629 Msa1279680:three_prime_UTR
TGCTTGTGGCCTTGCAAAAC+AGG 0.353700 8_3:+17114692 Msa1279680:CDS
GATAATCACCTTTCATCTTA+AGG 0.367061 8_3:-17113770 None:intergenic
AAATTGTAAAAGATGAATTT+GGG 0.395537 8_3:+17113094 Msa1279680:five_prime_UTR
TTGTTTGGGTTTCAGGATGA+TGG 0.406709 8_3:+17115350 Msa1279680:intron
TTCGTAACGTTCGGCTTGTT+CGG 0.410967 8_3:-17113442 None:intergenic
TTTATGATATATGGATGCAC+TGG 0.414849 8_3:+17115540 Msa1279680:three_prime_UTR
AGAGCAAGACCAAGCCTGAT+TGG 0.420669 8_3:-17114624 None:intergenic
TCCGTGATAACCTCACCCTT+TGG 0.424479 8_3:+17115231 Msa1279680:CDS
GACCATCTCTTCGTAACGTT+CGG 0.437327 8_3:-17113451 None:intergenic
AGATGAAAGGTGATTATCAT+AGG 0.447012 8_3:+17113775 Msa1279680:CDS
TACCACCAACTCACCCAATC+AGG 0.450085 8_3:+17114610 Msa1279680:CDS
AGAGAGAAAGTGTGTGAGAG+AGG 0.453774 8_3:-17113341 None:intergenic
TTATGAGAAATGTTCGTAAA+GGG 0.465201 8_3:-17113294 None:intergenic
GCAAGGCCACAAGCACGATC+AGG 0.466255 8_3:-17114684 None:intergenic
ATTGCTGAATTGGATACATT+GGG 0.469687 8_3:+17115167 Msa1279680:CDS
AGGTGAGAGAGATGAGAGAG+AGG 0.472479 8_3:-17113321 None:intergenic
GCTTTCTTCCTTCTGTTCGA+TGG 0.473046 8_3:-17113601 None:intergenic
TACTGCTTATAAAGCTGCTC+AGG 0.475422 8_3:+17113854 Msa1279680:CDS
ATCAAAGAAGCCGCACCAAA+AGG 0.476807 8_3:+17115383 Msa1279680:CDS
GAGCAAGACCAAGCCTGATT+GGG 0.484933 8_3:-17114623 None:intergenic
AAACTCTTCACTCTTCAGAC+AGG 0.486125 8_3:+17115766 Msa1279680:three_prime_UTR
TTTATGAGAAATGTTCGTAA+AGG 0.487490 8_3:-17113295 None:intergenic
TATTGCTGAATTGGATACAT+TGG 0.488219 8_3:+17115166 Msa1279680:CDS
ACGTGAAGAGTTCGTCTACA+TGG 0.496790 8_3:+17113410 Msa1279680:CDS
TTGCCATGGATCGATGAATC+TGG 0.497923 8_3:-17113374 None:intergenic
TGGTGTTGGTGCGGTTGCCA+TGG 0.499485 8_3:-17113388 None:intergenic
GGTGAGTTCTTCGCTTTCGA+CGG 0.507397 8_3:-17113499 None:intergenic
TCGGAGCAAGACGTGCTTCG+TGG 0.514368 8_3:+17113565 Msa1279680:CDS
AACTCTCCTGATCGTGCTTG+TGG 0.523777 8_3:+17114678 Msa1279680:CDS
GGATCGATGAATCTGGTTGA+AGG 0.526176 8_3:-17113367 None:intergenic
TGAGAAATGTTCGTAAAGGG+TGG 0.532740 8_3:-17113291 None:intergenic
CCTTTGGACCTCTGACATGC+AGG 0.533382 8_3:+17115247 Msa1279680:CDS
GGTGAGAGAGATGAGAGAGA+GGG 0.537893 8_3:-17113320 None:intergenic
TTCTTCGCTTTCGACGGCGG+CGG 0.538091 8_3:-17113493 None:intergenic
CCAACTCACCCAATCAGGCT+TGG 0.548958 8_3:+17114615 Msa1279680:CDS
CATCTCTTCCATCGAACAGA+AGG 0.549390 8_3:+17113593 Msa1279680:CDS
CCTGCATGTCAGAGGTCCAA+AGG 0.556945 8_3:-17115247 None:intergenic
CTGCATGTCAGAGGTCCAAA+GGG 0.558806 8_3:-17115246 None:intergenic
AGCCTGATTGGGTGAGTTGG+TGG 0.564969 8_3:-17114612 None:intergenic
TGAATTGGATACATTGGGAG+AGG 0.566946 8_3:+17115172 Msa1279680:CDS
CTCTTCACGTGGTGTTGGTG+CGG 0.568646 8_3:-17113397 None:intergenic
AACTCTTCACTCTTCAGACA+GGG 0.571026 8_3:+17115767 Msa1279680:three_prime_UTR
TCCAAAGGGTGAGGTTATCA+CGG 0.578031 8_3:-17115232 None:intergenic
ACGAACTCTTCACGTGGTGT+TGG 0.578137 8_3:-17113402 None:intergenic
CCAAGCCTGATTGGGTGAGT+TGG 0.579199 8_3:-17114615 None:intergenic
CAACCAGATTCATCGATCCA+TGG 0.582939 8_3:+17113371 Msa1279680:exon
GAGTTCTTCGCTTTCGACGG+CGG 0.587801 8_3:-17113496 None:intergenic
GAACTTTCCAATATCTGTAA+CGG 0.597556 8_3:+17113681 Msa1279680:CDS
GGCAAATCCGTACAAATTTG+GGG 0.601322 8_3:+17113181 Msa1279680:five_prime_UTR
TGTCAGAGGTCCAAAGGGTG+AGG 0.606809 8_3:-17115241 None:intergenic
TTATGATATATGGATGCACT+GGG 0.612064 8_3:+17115541 Msa1279680:three_prime_UTR
AAAGGGTGGATGTGAATGAG+AGG 0.612337 8_3:-17113277 None:intergenic
AGATCTGTAATCACGAATCA+CGG 0.615306 8_3:-17113646 None:intergenic
GAATCACCAGAAGCAGCAGA+AGG 0.617542 8_3:-17113735 None:intergenic
TATCTTGCTGAGTTTAAGAG+TGG 0.621733 8_3:+17113798 Msa1279680:CDS
AGCCGAACGTTACGAAGAGA+TGG 0.627906 8_3:+17113449 Msa1279680:CDS
ACGATATGATTACTGCTCAT+CGG 0.628913 8_3:-17115408 None:intergenic
ATATCATACCTGCATGTCAG+AGG 0.643750 8_3:-17115255 None:intergenic
ATTGGGAGAGGAATCATACA+AGG 0.653137 8_3:+17115184 Msa1279680:CDS
GAGGAGGTTACGTTCTTCGA+CGG 0.656962 8_3:-17113520 None:intergenic
TAACATGTTCATCGTTACCA+CGG 0.672519 8_3:-17113623 None:intergenic
CCTTTCAAAACATGATACAG+AGG 0.674464 8_3:-17115458 None:intergenic
GAACAGAAGGAAGAAAGCCG+TGG 0.676297 8_3:+17113606 Msa1279680:CDS
GCAAATCCGTACAAATTTGG+GGG 0.683328 8_3:+17113182 Msa1279680:five_prime_UTR
TATTCATTAGGCTTTCGATG+AGG 0.689894 8_3:+17115142 Msa1279680:intron
ATGTAGACGAACTCTTCACG+TGG 0.738511 8_3:-17113408 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGTAAAAGATGAATT+TGG + chr8_3:17113093-17113112 Msa1279680:five_prime_UTR 15.0%
!! AAATTGTAAAAGATGAATTT+GGG + chr8_3:17113094-17113113 Msa1279680:five_prime_UTR 15.0%
!!! TCTTATTTCAATTGTTTTTT+TGG + chr8_3:17113124-17113143 Msa1279680:intron 15.0%
!!! CTTATTTCAATTGTTTTTTT+GGG + chr8_3:17113125-17113144 Msa1279680:intron 15.0%
!! TTCAAATTCAAATGTATAAA+TGG + chr8_3:17113160-17113179 Msa1279680:five_prime_UTR 15.0%
!!! TAATATGATTTGTGTTAATT+AGG + chr8_3:17114091-17114110 Msa1279680:intron 15.0%
!! TCTTAATTAGGTTAAAATAA+TGG + chr8_3:17114203-17114222 Msa1279680:intron 15.0%
!!! ATTTTGGTTTATATTTTGTT+TGG + chr8_3:17115335-17115354 Msa1279680:intron 15.0%
!!! TTTTGGTTTATATTTTGTTT+GGG + chr8_3:17115336-17115355 Msa1279680:intron 15.0%
!! AAATTTCTATCATATGAAAT+TGG + chr8_3:17115629-17115648 Msa1279680:three_prime_UTR 15.0%
!!! TCATCTTTTACAATTTTCTT+AGG - chr8_3:17113090-17113109 None:intergenic 20.0%
!!! GATTTGATGATTTCTTAATT+AGG + chr8_3:17114191-17114210 Msa1279680:intron 20.0%
!! AAAATGAAAGTCTTAAATGA+TGG + chr8_3:17114290-17114309 Msa1279680:intron 20.0%
!! ACTACAAACTTTAATTGAAA+AGG - chr8_3:17114786-17114805 None:intergenic 20.0%
!!! TTTTCAATTAAAGTTTGTAG+TGG + chr8_3:17114785-17114804 Msa1279680:intron 20.0%
!! AATTCACATCAACATTAAAA+AGG - chr8_3:17114993-17115012 None:intergenic 20.0%
!! TAATGAATATAGAAAAGAAC+AGG - chr8_3:17115131-17115150 None:intergenic 20.0%
!!! TGTTCTTTTCTATATTCATT+AGG + chr8_3:17115130-17115149 Msa1279680:intron 20.0%
!!! CATATTCTGTTTATTGATTT+TGG + chr8_3:17115319-17115338 Msa1279680:intron 20.0%
!!! ATGGTCTATTTTATGATATA+TGG + chr8_3:17115531-17115550 Msa1279680:three_prime_UTR 20.0%
!! AATTGAAGAACAAACTAAAA+TGG - chr8_3:17115567-17115586 None:intergenic 20.0%
!!! GGGTTAACTATTTTTAATTC+AGG - chr8_3:17113222-17113241 None:intergenic 25.0%
!!! ATAGCAGTTTTTTGTTTTAG+TGG - chr8_3:17113252-17113271 None:intergenic 25.0%
! TTATGAGAAATGTTCGTAAA+GGG - chr8_3:17113297-17113316 None:intergenic 25.0%
! TTTATGAGAAATGTTCGTAA+AGG - chr8_3:17113298-17113317 None:intergenic 25.0%
! GAGATCTAACGTTATATTTA+TGG + chr8_3:17113892-17113911 Msa1279680:intron 25.0%
! GCAATATTTCAAACAAAGAA+TGG - chr8_3:17114001-17114020 None:intergenic 25.0%
! TTTAGGTAAGGGAAATTTAA+CGG + chr8_3:17114035-17114054 Msa1279680:intron 25.0%
!!! TTTTCAAATGAGTTGAATGT+AGG + chr8_3:17114247-17114266 Msa1279680:intron 25.0%
!! TTTCAAATGAGTTGAATGTA+GGG + chr8_3:17114248-17114267 Msa1279680:intron 25.0%
!!! TGTAGGGTATTGTTTATTTT+TGG + chr8_3:17114264-17114283 Msa1279680:intron 25.0%
!!! TTTAATTTGACTCTGTTTGT+AGG + chr8_3:17114569-17114588 Msa1279680:intron 25.0%
! TATTCTAGATACCGAATAAT+GGG + chr8_3:17114719-17114738 Msa1279680:intron 25.0%
! ACTACAGACTTTAATTGAAA+AGG - chr8_3:17114847-17114866 None:intergenic 25.0%
!! TTTTCAATTAAAGTCTGTAG+TGG + chr8_3:17114846-17114865 Msa1279680:intron 25.0%
! TAATTTCATTAACGTGTTTG+TGG + chr8_3:17114946-17114965 Msa1279680:intron 25.0%
! AATTTCATTAACGTGTTTGT+GGG + chr8_3:17114947-17114966 Msa1279680:intron 25.0%
!! AATGTTGATGTGAATTTGTT+AGG + chr8_3:17114997-17115016 Msa1279680:intron 25.0%
!! TGATTCTGTTCTGTTATTTA+TGG + chr8_3:17115085-17115104 Msa1279680:intron 25.0%
!!! TTATATTTTGTTTGGGTTTC+AGG + chr8_3:17115343-17115362 Msa1279680:intron 25.0%
!!! CAGTTTTTTGTTTTAGTGGA+CGG - chr8_3:17113248-17113267 None:intergenic 30.0%
GAACTTTCCAATATCTGTAA+CGG + chr8_3:17113681-17113700 Msa1279680:CDS 30.0%
AAGAATACCGTTACAGATAT+TGG - chr8_3:17113691-17113710 None:intergenic 30.0%
! GTTTTCTACCTTAAGATGAA+AGG + chr8_3:17113762-17113781 Msa1279680:CDS 30.0%
GATAATCACCTTTCATCTTA+AGG - chr8_3:17113773-17113792 None:intergenic 30.0%
AGATGAAAGGTGATTATCAT+AGG + chr8_3:17113775-17113794 Msa1279680:CDS 30.0%
TTAGATCTCAGAGAAAAAGA+TGG - chr8_3:17113881-17113900 None:intergenic 30.0%
! TCTATAACTGACTTTAGGTA+AGG + chr8_3:17114023-17114042 Msa1279680:intron 30.0%
! CTATAACTGACTTTAGGTAA+GGG + chr8_3:17114024-17114043 Msa1279680:intron 30.0%
! TTTAACGGAGTTTTTGTGTT+TGG + chr8_3:17114050-17114069 Msa1279680:intron 30.0%
TTGAACATAATCATGTGCAT+CGG - chr8_3:17114466-17114485 None:intergenic 30.0%
GTATTCTAGATACCGAATAA+TGG + chr8_3:17114718-17114737 Msa1279680:intron 30.0%
TATTTGTTCCTCAACAAGTT+TGG + chr8_3:17115049-17115068 Msa1279680:intron 30.0%
TATTGCTGAATTGGATACAT+TGG + chr8_3:17115166-17115185 Msa1279680:CDS 30.0%
ATTGCTGAATTGGATACATT+GGG + chr8_3:17115167-17115186 Msa1279680:CDS 30.0%
!!! CTCTGTATCATGTTTTGAAA+GGG + chr8_3:17115459-17115478 Msa1279680:three_prime_UTR 30.0%
!!! TCTGTATCATGTTTTGAAAG+GGG + chr8_3:17115460-17115479 Msa1279680:three_prime_UTR 30.0%
TTTATGATATATGGATGCAC+TGG + chr8_3:17115540-17115559 Msa1279680:three_prime_UTR 30.0%
TTATGATATATGGATGCACT+GGG + chr8_3:17115541-17115560 Msa1279680:three_prime_UTR 30.0%
!!! TCAGCTGATTTTTTTCATTG+AGG + chr8_3:17115681-17115700 Msa1279680:three_prime_UTR 30.0%
ATGGCAAATCCGTACAAATT+TGG + chr8_3:17113179-17113198 Msa1279680:five_prime_UTR 35.0%
TGGCAAATCCGTACAAATTT+GGG + chr8_3:17113180-17113199 Msa1279680:five_prime_UTR 35.0%
AATTTGCCCCCAAATTTGTA+CGG - chr8_3:17113191-17113210 None:intergenic 35.0%
TAACATGTTCATCGTTACCA+CGG - chr8_3:17113626-17113645 None:intergenic 35.0%
AGATCTGTAATCACGAATCA+CGG - chr8_3:17113649-17113668 None:intergenic 35.0%
TATCTTGCTGAGTTTAAGAG+TGG + chr8_3:17113798-17113817 Msa1279680:CDS 35.0%
! TGCGATCTATAACTGACTTT+AGG + chr8_3:17114018-17114037 Msa1279680:intron 35.0%
ATATTGACACCTCTGATCAA+AGG + chr8_3:17114417-17114436 Msa1279680:intron 35.0%
! GTGTTATTATTGCGTCAGTT+TGG + chr8_3:17114522-17114541 Msa1279680:intron 35.0%
! GAATACTAACCTGTTTTGCA+AGG - chr8_3:17114704-17114723 None:intergenic 35.0%
GAACATCATCTCCCATTATT+CGG - chr8_3:17114733-17114752 None:intergenic 35.0%
AATGGGAGATGATGTTCATT+TGG + chr8_3:17114736-17114755 Msa1279680:intron 35.0%
!! GATGTGAATTTGTTAGGTTC+TGG + chr8_3:17115003-17115022 Msa1279680:intron 35.0%
TATTCATTAGGCTTTCGATG+AGG + chr8_3:17115142-17115161 Msa1279680:intron 35.0%
ACGATATGATTACTGCTCAT+CGG - chr8_3:17115411-17115430 None:intergenic 35.0%
CCTTTCAAAACATGATACAG+AGG - chr8_3:17115461-17115480 None:intergenic 35.0%
!! CCTCTGTATCATGTTTTGAA+AGG + chr8_3:17115458-17115477 Msa1279680:three_prime_UTR 35.0%
! GTTGATGCTACAGAGATTTT+AGG + chr8_3:17115503-17115522 Msa1279680:three_prime_UTR 35.0%
! ACAGAGATTTTAGGCATTCA+TGG + chr8_3:17115512-17115531 Msa1279680:three_prime_UTR 35.0%
GGCAAATCCGTACAAATTTG+GGG + chr8_3:17113181-17113200 Msa1279680:five_prime_UTR 40.0%
GCAAATCCGTACAAATTTGG+GGG + chr8_3:17113182-17113201 Msa1279680:five_prime_UTR 40.0%
!!! TTTGTTTTAGTGGACGGTGA+GGG - chr8_3:17113242-17113261 None:intergenic 40.0%
!!! TTTTGTTTTAGTGGACGGTG+AGG - chr8_3:17113243-17113262 None:intergenic 40.0%
TGAGAAATGTTCGTAAAGGG+TGG - chr8_3:17113294-17113313 None:intergenic 40.0%
TACTGCTTATAAAGCTGCTC+AGG + chr8_3:17113854-17113873 Msa1279680:CDS 40.0%
!! ATGCTACACCAAACTTGTTG+AGG - chr8_3:17115060-17115079 None:intergenic 40.0%
TGAATTGGATACATTGGGAG+AGG + chr8_3:17115172-17115191 Msa1279680:CDS 40.0%
ATTGGGAGAGGAATCATACA+AGG + chr8_3:17115184-17115203 Msa1279680:CDS 40.0%
ATATCATACCTGCATGTCAG+AGG - chr8_3:17115258-17115277 None:intergenic 40.0%
! TTGTTTGGGTTTCAGGATGA+TGG + chr8_3:17115350-17115369 Msa1279680:intron 40.0%
!!! TCATGTTTTGAAAGGGGAGA+AGG + chr8_3:17115466-17115485 Msa1279680:three_prime_UTR 40.0%
AAACTCTTCACTCTTCAGAC+AGG + chr8_3:17115766-17115785 Msa1279680:three_prime_UTR 40.0%
AACTCTTCACTCTTCAGACA+GGG + chr8_3:17115767-17115786 Msa1279680:three_prime_UTR 40.0%
AAAGGGTGGATGTGAATGAG+AGG - chr8_3:17113280-17113299 None:intergenic 45.0%
! AGAGAGAAAGTGTGTGAGAG+AGG - chr8_3:17113344-17113363 None:intergenic 45.0%
GGATCGATGAATCTGGTTGA+AGG - chr8_3:17113370-17113389 None:intergenic 45.0%
CAACCAGATTCATCGATCCA+TGG + chr8_3:17113371-17113390 Msa1279680:exon 45.0%
TTGCCATGGATCGATGAATC+TGG - chr8_3:17113377-17113396 None:intergenic 45.0%
ATGTAGACGAACTCTTCACG+TGG - chr8_3:17113411-17113430 None:intergenic 45.0%
ACGTGAAGAGTTCGTCTACA+TGG + chr8_3:17113410-17113429 Msa1279680:CDS 45.0%
! TTCGTAACGTTCGGCTTGTT+CGG - chr8_3:17113445-17113464 None:intergenic 45.0%
GACCATCTCTTCGTAACGTT+CGG - chr8_3:17113454-17113473 None:intergenic 45.0%
! CGAAGAGATGGTCGATTTCA+TGG + chr8_3:17113461-17113480 Msa1279680:CDS 45.0%
! GATGACGTTTTTGTAGGCGA+CGG - chr8_3:17113547-17113566 None:intergenic 45.0%
GTCGCCTACAAAAACGTCAT+CGG + chr8_3:17113546-17113565 Msa1279680:CDS 45.0%
! TGCTCCGATGACGTTTTTGT+AGG - chr8_3:17113553-17113572 None:intergenic 45.0%
CATCTCTTCCATCGAACAGA+AGG + chr8_3:17113593-17113612 Msa1279680:CDS 45.0%
GCTTTCTTCCTTCTGTTCGA+TGG - chr8_3:17113604-17113623 None:intergenic 45.0%
! TTGATTCCTTCTGCTGCTTC+TGG + chr8_3:17113729-17113748 Msa1279680:CDS 45.0%
! TGCTGCTTCTGGTGATTCTA+AGG + chr8_3:17113740-17113759 Msa1279680:CDS 45.0%
CGATGAGGCTATTGCTGAAT+TGG + chr8_3:17115157-17115176 Msa1279680:CDS 45.0%
TCCAAAGGGTGAGGTTATCA+CGG - chr8_3:17115235-17115254 None:intergenic 45.0%
ATCAAAGAAGCCGCACCAAA+AGG + chr8_3:17115383-17115402 Msa1279680:CDS 45.0%
GGTGAGAGAGATGAGAGAGA+GGG - chr8_3:17113323-17113342 None:intergenic 50.0%
AGGTGAGAGAGATGAGAGAG+AGG - chr8_3:17113324-17113343 None:intergenic 50.0%
ACGAACTCTTCACGTGGTGT+TGG - chr8_3:17113405-17113424 None:intergenic 50.0%
AGCCGAACGTTACGAAGAGA+TGG + chr8_3:17113449-17113468 Msa1279680:CDS 50.0%
GGTGAGTTCTTCGCTTTCGA+CGG - chr8_3:17113502-17113521 None:intergenic 50.0%
GAGGAGGTTACGTTCTTCGA+CGG - chr8_3:17113523-17113542 None:intergenic 50.0%
GAACAGAAGGAAGAAAGCCG+TGG + chr8_3:17113606-17113625 Msa1279680:CDS 50.0%
GAATCACCAGAAGCAGCAGA+AGG - chr8_3:17113738-17113757 None:intergenic 50.0%
TACCACCAACTCACCCAATC+AGG + chr8_3:17114610-17114629 Msa1279680:CDS 50.0%
GAGCAAGACCAAGCCTGATT+GGG - chr8_3:17114626-17114645 None:intergenic 50.0%
AGAGCAAGACCAAGCCTGAT+TGG - chr8_3:17114627-17114646 None:intergenic 50.0%
AACTCTCCTGATCGTGCTTG+TGG + chr8_3:17114678-17114697 Msa1279680:CDS 50.0%
! TGCTTGTGGCCTTGCAAAAC+AGG + chr8_3:17114692-17114711 Msa1279680:CDS 50.0%
! TTGTGGGAGCTTTAGTGCAG+TGG + chr8_3:17114963-17114982 Msa1279680:intron 50.0%
! TGTGGGAGCTTTAGTGCAGT+GGG + chr8_3:17114964-17114983 Msa1279680:intron 50.0%
TCCGTGATAACCTCACCCTT+TGG + chr8_3:17115231-17115250 Msa1279680:CDS 50.0%
CTGCATGTCAGAGGTCCAAA+GGG - chr8_3:17115249-17115268 None:intergenic 50.0%
!! CTCTTCACGTGGTGTTGGTG+CGG - chr8_3:17113400-17113419 None:intergenic 55.0%
GAGTTCTTCGCTTTCGACGG+CGG - chr8_3:17113499-17113518 None:intergenic 55.0%
! TTTTGTAGGCGACGGAGAGG+AGG - chr8_3:17113539-17113558 None:intergenic 55.0%
! CGTTTTTGTAGGCGACGGAG+AGG - chr8_3:17113542-17113561 None:intergenic 55.0%
CCAGACACGCCTTTGATCAG+AGG - chr8_3:17114429-17114448 None:intergenic 55.0%
! CCTCTGATCAAAGGCGTGTC+TGG + chr8_3:17114426-17114445 Msa1279680:intron 55.0%
! AGGCGTGTCTGGTTTCTGAC+AGG + chr8_3:17114437-17114456 Msa1279680:intron 55.0%
! GGCGTGTCTGGTTTCTGACA+GGG + chr8_3:17114438-17114457 Msa1279680:intron 55.0%
! GCGTGTCTGGTTTCTGACAG+GGG + chr8_3:17114439-17114458 Msa1279680:intron 55.0%
! AGCCTGATTGGGTGAGTTGG+TGG - chr8_3:17114615-17114634 None:intergenic 55.0%
CCAAGCCTGATTGGGTGAGT+TGG - chr8_3:17114618-17114637 None:intergenic 55.0%
CCAACTCACCCAATCAGGCT+TGG + chr8_3:17114615-17114634 Msa1279680:CDS 55.0%
TGTCAGAGGTCCAAAGGGTG+AGG - chr8_3:17115244-17115263 None:intergenic 55.0%
CCTGCATGTCAGAGGTCCAA+AGG - chr8_3:17115250-17115269 None:intergenic 55.0%
CCTTTGGACCTCTGACATGC+AGG + chr8_3:17115247-17115266 Msa1279680:CDS 55.0%
! TACTGCTCATCGGCGCCTTT+TGG - chr8_3:17115401-17115420 None:intergenic 55.0%
!! TGGTGTTGGTGCGGTTGCCA+TGG - chr8_3:17113391-17113410 None:intergenic 60.0%
TTCTTCGCTTTCGACGGCGG+CGG - chr8_3:17113496-17113515 None:intergenic 60.0%
TCGGAGCAAGACGTGCTTCG+TGG + chr8_3:17113565-17113584 Msa1279680:CDS 60.0%
GCAAGGCCACAAGCACGATC+AGG - chr8_3:17114687-17114706 None:intergenic 60.0%
! CTCATCGGCGCCTTTTGGTG+CGG - chr8_3:17115396-17115415 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 17113075 17115879 17113075 ID=Msa1279680;Name=Msa1279680
chr8_3 mRNA 17113075 17115879 17113075 ID=Msa1279680-mRNA-1;Parent=Msa1279680;Name=Msa1279680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=295|1|1|1|0.75|0.6|5|458|260
chr8_3 exon 17113075 17113125 17113075 ID=Msa1279680-mRNA-1:exon:6602;Parent=Msa1279680-mRNA-1
chr8_3 exon 17113146 17113875 17113146 ID=Msa1279680-mRNA-1:exon:6603;Parent=Msa1279680-mRNA-1
chr8_3 exon 17114591 17114713 17114591 ID=Msa1279680-mRNA-1:exon:6604;Parent=Msa1279680-mRNA-1
chr8_3 exon 17115152 17115268 17115152 ID=Msa1279680-mRNA-1:exon:6605;Parent=Msa1279680-mRNA-1
chr8_3 exon 17115365 17115879 17115365 ID=Msa1279680-mRNA-1:exon:6606;Parent=Msa1279680-mRNA-1
chr8_3 five_prime_UTR 17113075 17113125 17113075 ID=Msa1279680-mRNA-1:five_prime_utr;Parent=Msa1279680-mRNA-1
chr8_3 five_prime_UTR 17113146 17113389 17113146 ID=Msa1279680-mRNA-1:five_prime_utr;Parent=Msa1279680-mRNA-1
chr8_3 CDS 17113390 17113875 17113390 ID=Msa1279680-mRNA-1:cds;Parent=Msa1279680-mRNA-1
chr8_3 CDS 17114591 17114713 17114591 ID=Msa1279680-mRNA-1:cds;Parent=Msa1279680-mRNA-1
chr8_3 CDS 17115152 17115268 17115152 ID=Msa1279680-mRNA-1:cds;Parent=Msa1279680-mRNA-1
chr8_3 CDS 17115365 17115421 17115365 ID=Msa1279680-mRNA-1:cds;Parent=Msa1279680-mRNA-1
chr8_3 three_prime_UTR 17115422 17115879 17115422 ID=Msa1279680-mRNA-1:three_prime_utr;Parent=Msa1279680-mRNA-1
Gene Sequence

>Msa1279680

ATGGCAACCGCACCAACACCACGTGAAGAGTTCGTCTACATGGCGAAACTCGCCGAACAAGCCGAACGTTACGAAGAGATGGTCGATTTCATGGAAAAAGTAACCGCCGCCGTCGAAAGCGAAGAACTCACCGTCGAAGAACGTAACCTCCTCTCCGTCGCCTACAAAAACGTCATCGGAGCAAGACGTGCTTCGTGGCGTATCATCTCTTCCATCGAACAGAAGGAAGAAAGCCGTGGTAACGATGAACATGTTACCGTGATTCGTGATTACAGATCTAAGATCGAAGCTGAACTTTCCAATATCTGTAACGGTATTCTTAAGCTTCTTGATTCTCGCTTGATTCCTTCTGCTGCTTCTGGTGATTCTAAGGTTTTCTACCTTAAGATGAAAGGTGATTATCATAGGTATCTTGCTGAGTTTAAGAGTGGCGCTGAGCGTAAAGATGCTGCTGAAAGTACTCTTACTGCTTATAAAGCTGCTCAGGACATTGCTAACTCTGAGCTACCACCAACTCACCCAATCAGGCTTGGTCTTGCTCTGAACTTCTCAGTGTTTTACTATGAGATTCTTAACTCTCCTGATCGTGCTTGTGGCCTTGCAAAACAGGCTTTCGATGAGGCTATTGCTGAATTGGATACATTGGGAGAGGAATCATACAAGGACAGCACTTTGATCATGCAACTTCTCCGTGATAACCTCACCCTTTGGACCTCTGACATGCAGGATGATGGTGCAGATGAAATCAAAGAAGCCGCACCAAAAGGCGCCGATGAGCAGTAA
Protein sequence

>Msa1279680

MATAPTPREEFVYMAKLAEQAERYEEMVDFMEKVTAAVESEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDEHVTVIRDYRSKIEAELSNICNGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKSGAERKDAAESTLTAYKAAQDIANSELPPTHPIRLGLALNFSVFYYEILNSPDRACGLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAAPKGADEQ*