Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379340 | XP_003602823.2 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379340 | sp|P46266|1433_PEA | 96.923 | 260 | 8 | 0 | 1 | 260 | 1 | 260 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379340 | G7J3X9 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041000 | Msa0379340 | -0.805710 | 1.170373e-49 | -8.615850e-47 |
| Msa0049330 | Msa0379340 | -0.807175 | 5.747192e-50 | -8.615850e-47 |
| Msa0053960 | Msa0379340 | -0.800575 | 1.351371e-48 | -8.615850e-47 |
| Msa0064550 | Msa0379340 | -0.803177 | 3.948569e-49 | -8.615850e-47 |
| Msa0091000 | Msa0379340 | -0.805702 | 1.174857e-49 | -8.615850e-47 |
| Msa0094940 | Msa0379340 | 0.811945 | 5.429706e-51 | -8.615850e-47 |
| Msa0104360 | Msa0379340 | -0.812736 | 3.648570e-51 | -8.615850e-47 |
| Msa0108070 | Msa0379340 | -0.813629 | 2.323114e-51 | -8.615850e-47 |
| Msa0116510 | Msa0379340 | -0.801593 | 8.368380e-49 | -8.615850e-47 |
| Msa0135590 | Msa0379340 | -0.819344 | 1.220320e-52 | -8.615850e-47 |
| Msa0153440 | Msa0379340 | -0.824089 | 9.747227e-54 | -8.615850e-47 |
| Msa0154240 | Msa0379340 | -0.808524 | 2.969146e-50 | -8.615850e-47 |
| Msa0185640 | Msa0379340 | 0.806924 | 6.494575e-50 | -8.615850e-47 |
| Msa0198440 | Msa0379340 | -0.821634 | 3.636944e-53 | -8.615850e-47 |
| Msa0226620 | Msa0379340 | 0.816100 | 6.579864e-52 | -8.615850e-47 |
| Msa0377280 | Msa0379340 | -0.807529 | 4.835923e-50 | -8.615850e-47 |
| Msa0379340 | Msa0384530 | -0.814876 | 1.232150e-51 | -8.615850e-47 |
| Msa0379340 | Msa0389060 | -0.819939 | 8.926451e-53 | -8.615850e-47 |
| Msa0379340 | Msa0404690 | -0.814773 | 1.298838e-51 | -8.615850e-47 |
| Msa0379340 | Msa0405250 | 0.826565 | 2.529797e-54 | -8.615850e-47 |
| Msa0379340 | Msa0428850 | 0.994278 | 5.761338e-206 | -8.615850e-47 |
| Msa0379340 | Msa0437330 | -0.843860 | 1.080690e-58 | -8.615850e-47 |
| Msa0379340 | Msa0479030 | -0.827970 | 1.165929e-54 | -8.615850e-47 |
| Msa0379340 | Msa0479950 | -0.803328 | 3.673366e-49 | -8.615850e-47 |
| Msa0379340 | Msa0569360 | -0.802950 | 4.398560e-49 | -8.615850e-47 |
| Msa0379340 | Msa0570680 | -0.823674 | 1.219725e-53 | -8.615850e-47 |
| Msa0379340 | Msa0589610 | -0.833284 | 5.825961e-56 | -8.615850e-47 |
| Msa0379340 | Msa0610780 | -0.803659 | 3.136616e-49 | -8.615850e-47 |
| Msa0379340 | Msa0610810 | -0.828775 | 7.451129e-55 | -8.615850e-47 |
| Msa0379340 | Msa0675010 | -0.823823 | 1.125663e-53 | -8.615850e-47 |
| Msa0379340 | Msa0709660 | -0.805423 | 1.344763e-49 | -8.615850e-47 |
| Msa0379340 | Msa0732080 | 0.819703 | 1.010595e-52 | -8.615850e-47 |
| Msa0379340 | Msa0744490 | -0.809983 | 1.444663e-50 | -8.615850e-47 |
| Msa0379340 | Msa0744500 | -0.835376 | 1.739217e-56 | -8.615850e-47 |
| Msa0379340 | Msa0749150 | -0.839600 | 1.438485e-57 | -8.615850e-47 |
| Msa0379340 | Msa0775580 | -0.820551 | 6.461006e-53 | -8.615850e-47 |
| Msa0379340 | Msa0788360 | -0.838379 | 2.977371e-57 | -8.615850e-47 |
| Msa0379340 | Msa0792880 | -0.849819 | 2.532008e-60 | -8.615850e-47 |
| Msa0379340 | Msa0810350 | 0.851734 | 7.316380e-61 | -8.615850e-47 |
| Msa0379340 | Msa0812970 | -0.804005 | 2.657962e-49 | -8.615850e-47 |
| Msa0379340 | Msa0813030 | -0.813165 | 2.938883e-51 | -8.615850e-47 |
| Msa0379340 | Msa0826650 | -0.841342 | 5.036260e-58 | -8.615850e-47 |
| Msa0379340 | Msa0828570 | -0.819850 | 9.353347e-53 | -8.615850e-47 |
| Msa0379340 | Msa0828900 | -0.849514 | 3.080042e-60 | -8.615850e-47 |
| Msa0379340 | Msa0853500 | -0.815141 | 1.076010e-51 | -8.615850e-47 |
| Msa0379340 | Msa0864690 | -0.840736 | 7.265444e-58 | -8.615850e-47 |
| Msa0379340 | Msa0883350 | -0.823089 | 1.671419e-53 | -8.615850e-47 |
| Msa0379340 | Msa0884620 | -0.830021 | 3.712117e-55 | -8.615850e-47 |
| Msa0379340 | Msa0903000 | -0.800021 | 1.752235e-48 | -8.615850e-47 |
| Msa0379340 | Msa0906360 | -0.801987 | 6.945986e-49 | -8.615850e-47 |
| Msa0379340 | Msa0911910 | -0.800604 | 1.333148e-48 | -8.615850e-47 |
| Msa0379340 | Msa0938420 | -0.831320 | 1.784803e-55 | -8.615850e-47 |
| Msa0379340 | Msa0984000 | -0.804886 | 1.741456e-49 | -8.615850e-47 |
| Msa0379340 | Msa1041160 | 0.807299 | 5.408703e-50 | -8.615850e-47 |
| Msa0379340 | Msa1054410 | -0.806433 | 8.246617e-50 | -8.615850e-47 |
| Msa0379340 | Msa1108540 | 0.802879 | 4.550566e-49 | -8.615850e-47 |
| Msa0379340 | Msa1125450 | -0.816746 | 4.716336e-52 | -8.615850e-47 |
| Msa0379340 | Msa1127910 | 0.816580 | 5.138891e-52 | -8.615850e-47 |
| Msa0379340 | Msa1130350 | -0.848555 | 5.689558e-60 | -8.615850e-47 |
| Msa0379340 | Msa1130630 | -0.849315 | 3.500165e-60 | -8.615850e-47 |
| Msa0379340 | Msa1138450 | -0.804981 | 1.664098e-49 | -8.615850e-47 |
| Msa0379340 | Msa1141250 | 0.819158 | 1.344891e-52 | -8.615850e-47 |
| Msa0379340 | Msa1173380 | -0.801247 | 9.851708e-49 | -8.615850e-47 |
| Msa0379340 | Msa1178120 | -0.818594 | 1.807077e-52 | -8.615850e-47 |
| Msa0379340 | Msa1182800 | -0.815693 | 8.112024e-52 | -8.615850e-47 |
| Msa0379340 | Msa1182830 | -0.832120 | 1.132919e-55 | -8.615850e-47 |
| Msa0379340 | Msa1203360 | -0.827029 | 1.960604e-54 | -8.615850e-47 |
| Msa0379340 | Msa1206760 | -0.816141 | 6.444000e-52 | -8.615850e-47 |
| Msa0379340 | Msa1237260 | -0.827597 | 1.432554e-54 | -8.615850e-47 |
| Msa0379340 | Msa1252300 | -0.831977 | 1.229102e-55 | -8.615850e-47 |
| Msa0379340 | Msa1256540 | 0.804410 | 2.189265e-49 | -8.615850e-47 |
| Msa0379340 | Msa1272950 | -0.810598 | 1.064318e-50 | -8.615850e-47 |
| Msa0379340 | Msa1279680 | 0.806129 | 9.554855e-50 | -8.615850e-47 |
| Msa0379340 | Msa1296960 | 0.808254 | 3.389950e-50 | -8.615850e-47 |
| Msa0379340 | Msa1317710 | -0.808069 | 3.712427e-50 | -8.615850e-47 |
| Msa0379340 | Msa1340530 | -0.819345 | 1.219650e-52 | -8.615850e-47 |
| Msa0379340 | Msa1386250 | -0.819933 | 8.952836e-53 | -8.615850e-47 |
| Msa0379340 | Msa1398870 | 0.807046 | 6.119363e-50 | -8.615850e-47 |
| Msa0379340 | Msa1424510 | -0.818097 | 2.341545e-52 | -8.615850e-47 |
| Msa0379340 | Msa1427810 | -0.844197 | 8.777319e-59 | -8.615850e-47 |
| Msa0379340 | Msa1441200 | -0.856145 | 3.921855e-62 | -8.615850e-47 |
| Msa0379340 | Msa1460310 | 0.838476 | 2.811666e-57 | -8.615850e-47 |
| Msa0379340 | Msa1463560 | 0.988824 | 1.477557e-175 | -8.615850e-47 |
| Msa0245870 | Msa0379340 | -0.835114 | 2.025656e-56 | -8.615850e-47 |
| Msa0264940 | Msa0379340 | 0.835089 | 2.055174e-56 | -8.615850e-47 |
| Msa0265980 | Msa0379340 | 0.818542 | 1.856107e-52 | -8.615850e-47 |
| Msa0278670 | Msa0379340 | -0.823784 | 1.149273e-53 | -8.615850e-47 |
| Msa0302990 | Msa0379340 | 0.838159 | 3.394435e-57 | -8.615850e-47 |
| Msa0308570 | Msa0379340 | -0.824521 | 7.718419e-54 | -8.615850e-47 |
| Msa0318070 | Msa0379340 | -0.815099 | 1.099517e-51 | -8.615850e-47 |
| Msa0342340 | Msa0379340 | 0.805240 | 1.468618e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379340 | MtrunA17_Chr3g0132301 | 100.000 | 260 | 0 | 0 | 1 | 260 | 1 | 260 | 0.0 | 533 |
| Msa0379340 | MtrunA17_Chr5g0426551 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 3.85e-177 | 488 |
| Msa0379340 | MtrunA17_Chr3g0133161 | 76.793 | 237 | 54 | 1 | 8 | 243 | 11 | 247 | 1.18e-135 | 382 |
| Msa0379340 | MtrunA17_Chr2g0325591 | 72.840 | 243 | 64 | 2 | 3 | 245 | 2 | 242 | 5.64e-129 | 365 |
| Msa0379340 | MtrunA17_Chr5g0418971 | 71.951 | 246 | 67 | 2 | 3 | 248 | 2 | 245 | 1.28e-126 | 360 |
| Msa0379340 | MtrunA17_Chr8g0379011 | 71.721 | 244 | 67 | 2 | 3 | 246 | 2 | 243 | 3.10e-125 | 355 |
| Msa0379340 | MtrunA17_Chr2g0283791 | 69.444 | 252 | 73 | 3 | 6 | 256 | 3 | 251 | 3.29e-124 | 353 |
| Msa0379340 | MtrunA17_Chr2g0316011 | 66.275 | 255 | 84 | 1 | 1 | 255 | 1 | 253 | 6.35e-122 | 348 |
| Msa0379340 | MtrunA17_Chr4g0043141 | 64.017 | 239 | 65 | 2 | 27 | 246 | 1 | 237 | 5.38e-107 | 309 |
| Msa0379340 | MtrunA17_Chr1g0164601 | 59.574 | 235 | 89 | 4 | 8 | 240 | 11 | 241 | 1.45e-90 | 268 |
| Msa0379340 | MtrunA17_Chr3g0082111 | 59.149 | 235 | 90 | 4 | 8 | 240 | 41 | 271 | 2.59e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379340 | AT1G78300.1 | 91.797 | 256 | 20 | 1 | 6 | 260 | 3 | 258 | 6.68e-173 | 477 |
| Msa0379340 | AT1G35160.1 | 87.259 | 259 | 32 | 1 | 3 | 260 | 6 | 264 | 1.67e-167 | 464 |
| Msa0379340 | AT4G09000.1 | 86.260 | 262 | 32 | 1 | 3 | 260 | 5 | 266 | 1.64e-164 | 456 |
| Msa0379340 | AT1G35160.2 | 78.746 | 287 | 32 | 2 | 3 | 260 | 6 | 292 | 2.20e-161 | 449 |
| Msa0379340 | AT5G38480.1 | 86.111 | 252 | 34 | 1 | 6 | 257 | 2 | 252 | 1.18e-160 | 446 |
| Msa0379340 | AT3G02520.1 | 84.706 | 255 | 37 | 2 | 6 | 258 | 3 | 257 | 8.97e-159 | 441 |
| Msa0379340 | AT3G02520.2 | 84.706 | 255 | 37 | 2 | 6 | 258 | 3 | 257 | 8.97e-159 | 441 |
| Msa0379340 | AT5G38480.3 | 86.111 | 252 | 33 | 2 | 6 | 257 | 2 | 251 | 2.51e-158 | 440 |
| Msa0379340 | AT5G38480.2 | 86.111 | 252 | 33 | 2 | 6 | 257 | 2 | 251 | 2.51e-158 | 440 |
| Msa0379340 | AT4G09000.2 | 88.750 | 240 | 27 | 0 | 3 | 242 | 5 | 244 | 3.83e-158 | 442 |
| Msa0379340 | AT5G16050.1 | 82.308 | 260 | 43 | 1 | 3 | 259 | 2 | 261 | 5.60e-150 | 419 |
| Msa0379340 | AT5G16050.2 | 82.308 | 260 | 43 | 1 | 3 | 259 | 2 | 261 | 5.60e-150 | 419 |
| Msa0379340 | AT5G10450.2 | 78.776 | 245 | 51 | 1 | 3 | 246 | 2 | 246 | 4.52e-143 | 401 |
| Msa0379340 | AT5G10450.4 | 76.800 | 250 | 57 | 1 | 3 | 251 | 2 | 251 | 1.25e-142 | 401 |
| Msa0379340 | AT5G10450.1 | 78.926 | 242 | 50 | 1 | 3 | 243 | 2 | 243 | 1.57e-142 | 400 |
| Msa0379340 | AT5G10450.3 | 79.253 | 241 | 49 | 1 | 3 | 242 | 2 | 242 | 6.55e-142 | 399 |
| Msa0379340 | AT5G65430.2 | 79.167 | 240 | 49 | 1 | 8 | 246 | 7 | 246 | 6.91e-141 | 395 |
| Msa0379340 | AT5G65430.1 | 79.325 | 237 | 48 | 1 | 8 | 243 | 7 | 243 | 1.74e-140 | 395 |
| Msa0379340 | AT5G65430.3 | 79.661 | 236 | 47 | 1 | 8 | 242 | 7 | 242 | 6.21e-140 | 394 |
| Msa0379340 | AT1G26480.1 | 72.222 | 252 | 67 | 2 | 8 | 258 | 10 | 259 | 1.20e-129 | 368 |
| Msa0379340 | AT1G34760.1 | 71.429 | 238 | 66 | 1 | 8 | 245 | 5 | 240 | 3.52e-122 | 348 |
| Msa0379340 | AT1G34760.2 | 71.429 | 238 | 66 | 1 | 8 | 245 | 5 | 240 | 5.02e-122 | 348 |
| Msa0379340 | AT2G42590.1 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 1.32e-121 | 347 |
| Msa0379340 | AT2G42590.3 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 1.35e-121 | 348 |
| Msa0379340 | AT2G42590.2 | 69.200 | 250 | 74 | 2 | 8 | 256 | 7 | 254 | 4.14e-121 | 346 |
| Msa0379340 | AT1G22300.1 | 67.331 | 251 | 80 | 2 | 8 | 258 | 5 | 253 | 5.60e-116 | 333 |
| Msa0379340 | AT1G22300.2 | 67.331 | 251 | 80 | 2 | 8 | 258 | 5 | 253 | 6.81e-116 | 333 |
| Msa0379340 | AT1G22300.3 | 69.038 | 239 | 72 | 2 | 8 | 246 | 5 | 241 | 1.13e-114 | 329 |
| Msa0379340 | AT1G78220.1 | 48.069 | 233 | 118 | 2 | 8 | 239 | 5 | 235 | 1.23e-70 | 217 |
| Msa0379340 | AT1G22290.2 | 45.238 | 210 | 93 | 5 | 11 | 217 | 8 | 198 | 9.87e-48 | 158 |
| Msa0379340 | AT1G22290.1 | 44.928 | 207 | 92 | 5 | 11 | 214 | 8 | 195 | 1.98e-47 | 156 |
| Msa0379340 | AT2G10450.1 | 71.429 | 49 | 14 | 0 | 207 | 255 | 16 | 64 | 4.48e-18 | 77.0 |
Find 96 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGCTTGTTGCCAATCTCTT+TGG | 0.214735 | 3_1:+80430486 | Msa0379340:three_prime_UTR |
| AAACTTGATCTCGCCGAATT+TGG | 0.226216 | 3_1:+80430676 | Msa0379340:three_prime_UTR |
| AGAGCAAGACCCAGCCTAAT+TGG | 0.274942 | 3_1:-80429301 | None:intergenic |
| TTCATGTCTGTTATGAGTTC+TGG | 0.280155 | 3_1:+80430527 | Msa0379340:three_prime_UTR |
| GACGGTGAGTTCTTCGTTAT+CGG | 0.280595 | 3_1:-80428572 | None:intergenic |
| TGCTTGTTGCCAATCTCTTT+GGG | 0.288401 | 3_1:+80430487 | Msa0379340:three_prime_UTR |
| AGGAGAAGTTTGATCCTAAT+TGG | 0.291226 | 3_1:-80430436 | None:intergenic |
| CTCATTCCTTCCGCTGCTTC+CGG | 0.316176 | 3_1:+80428799 | Msa0379340:CDS |
| TAATATCCGCTCACCAAATT+CGG | 0.339022 | 3_1:-80430689 | None:intergenic |
| TGATGAAGCAATTGCTGAAC+TGG | 0.341177 | 3_1:+80430159 | Msa0379340:CDS |
| TTCAGTGTCCTCAAGAAAAT+AGG | 0.346803 | 3_1:-80430606 | None:intergenic |
| TACTGCTGTTCATCGGGTTT+AGG | 0.348488 | 3_1:-80430399 | None:intergenic |
| CGAAGAAATGGTGGAGTTCA+TGG | 0.350821 | 3_1:+80428531 | Msa0379340:CDS |
| AACCTGTTTAGCAAGATTGC+AGG | 0.360144 | 3_1:-80429371 | None:intergenic |
| CTTCATTCATTAACATATAG+AGG | 0.370439 | 3_1:-80430456 | None:intergenic |
| GTTATGAGTTCTGGATGTCC+TGG | 0.372021 | 3_1:+80430536 | Msa0379340:three_prime_UTR |
| CACCATTTCTTCGTAGCGTT+CGG | 0.376229 | 3_1:-80428521 | None:intergenic |
| TGCTCCGATGACGTTCTTGT+AGG | 0.378815 | 3_1:-80428620 | None:intergenic |
| TTCGTAGCGTTCGGCTTGTT+CGG | 0.387733 | 3_1:-80428512 | None:intergenic |
| TGCCTGCAATCTTGCTAAAC+AGG | 0.391731 | 3_1:+80429369 | Msa0379340:CDS |
| GGTAATCTCCCTTCATCTTA+AGG | 0.395416 | 3_1:-80428840 | None:intergenic |
| CGCTGCTTCCGGTGATTCCA+AGG | 0.396427 | 3_1:+80428810 | Msa0379340:CDS |
| TTTGTTTGGTTTCAGGATGA+TGG | 0.406229 | 3_1:+80430351 | Msa0379340:intron |
| AGCCGAACGCTACGAAGAAA+TGG | 0.413922 | 3_1:+80428519 | Msa0379340:CDS |
| TTTGTTTACTGCTGTTCATC+GGG | 0.421726 | 3_1:-80430405 | None:intergenic |
| TGCCACCAACTCATCCAATT+AGG | 0.435904 | 3_1:+80429287 | Msa0379340:CDS |
| GCAAGATTGCAGGCACGATC+AGG | 0.442951 | 3_1:-80429361 | None:intergenic |
| ATTATCACTTGTTATATTTG+AGG | 0.443079 | 3_1:+80430754 | Msa0379340:three_prime_UTR |
| TTATCACTTGTTATATTTGA+GGG | 0.443479 | 3_1:+80430755 | Msa0379340:three_prime_UTR |
| AGCTGCTTCTTTAATTTCAT+CGG | 0.448476 | 3_1:-80430376 | None:intergenic |
| ATCTCAGCACCCAAAGAGAT+TGG | 0.450182 | 3_1:-80430496 | None:intergenic |
| TTCTTCGTTATCGGCGTTGG+CGG | 0.458530 | 3_1:-80428563 | None:intergenic |
| ACCAACTCATCCAATTAGGC+TGG | 0.462152 | 3_1:+80429291 | Msa0379340:CDS |
| CTCAGCAGCCTCCTTACGCT+CGG | 0.471405 | 3_1:-80428893 | None:intergenic |
| CTCTATATGTTAATGAATGA+AGG | 0.471694 | 3_1:+80430457 | Msa0379340:three_prime_UTR |
| CCTGCATGTCAGAGGTCCAT+AGG | 0.480592 | 3_1:-80430249 | None:intergenic |
| ATTTGTTTACTGCTGTTCAT+CGG | 0.482074 | 3_1:-80430406 | None:intergenic |
| TAGAGAGAGAAAGTGAGATC+TGG | 0.484019 | 3_1:-80428427 | None:intergenic |
| ATGGGTCATGAACTCGTGGT+AGG | 0.488348 | 3_1:+80430722 | Msa0379340:three_prime_UTR |
| TCGGAGCACGACGTGCTTCG+TGG | 0.495843 | 3_1:+80428635 | Msa0379340:CDS |
| CCCAGCCTAATTGGATGAGT+TGG | 0.496782 | 3_1:-80429292 | None:intergenic |
| CGCCGCTTACAAATCTGCTC+AGG | 0.501140 | 3_1:+80428924 | Msa0379340:CDS |
| CATCTTAAGGTAGAAAACCT+TGG | 0.502188 | 3_1:-80428827 | None:intergenic |
| GGCGGCCGCTCATTCACCTC+GGG | 0.502842 | 3_1:+80428462 | Msa0379340:CDS |
| CAAGACTGGCGCCGAGCGTA+AGG | 0.509038 | 3_1:+80428882 | Msa0379340:CDS |
| TTCCTCGATCGAACAGAAAG+AGG | 0.515919 | 3_1:+80428666 | Msa0379340:CDS |
| GAGTTCTTCGTTATCGGCGT+TGG | 0.515957 | 3_1:-80428566 | None:intergenic |
| AGCCTAATTGGATGAGTTGG+TGG | 0.523887 | 3_1:-80429289 | None:intergenic |
| TTCGTGATAATCTCACCCTA+TGG | 0.525895 | 3_1:+80430233 | Msa0379340:CDS |
| TTATGAGTTCTGGATGTCCT+GGG | 0.527707 | 3_1:+80430537 | Msa0379340:three_prime_UTR |
| GTAGAAAACCTTGGAATCAC+CGG | 0.533118 | 3_1:-80428818 | None:intergenic |
| CCTATGGACCTCTGACATGC+AGG | 0.534557 | 3_1:+80430249 | Msa0379340:CDS |
| AGATCGGTAGTCACGGATGA+CGG | 0.545474 | 3_1:-80428716 | None:intergenic |
| TGTTAATGAATGAAGGAAGA+AGG | 0.545599 | 3_1:+80430464 | Msa0379340:three_prime_UTR |
| CTGCATGTCAGAGGTCCATA+GGG | 0.549120 | 3_1:-80430248 | None:intergenic |
| AGCAGCGGAAGGAATGAGAC+GGG | 0.550202 | 3_1:-80428794 | None:intergenic |
| TGAACTCAGCAAGATACCTA+TGG | 0.552878 | 3_1:-80428861 | None:intergenic |
| TGGGTCATGAACTCGTGGTA+GGG | 0.555219 | 3_1:+80430723 | Msa0379340:three_prime_UTR |
| CTCCTCTTTCTGTTCGATCG+AGG | 0.555820 | 3_1:-80428668 | None:intergenic |
| AAGAACTCACCGTCGAAGAG+AGG | 0.556409 | 3_1:+80428581 | Msa0379340:CDS |
| TATCTTGCTGAGTTCAAGAC+TGG | 0.559984 | 3_1:+80428868 | Msa0379340:CDS |
| CTACCGATCTAAGATCGAAT+CGG | 0.562157 | 3_1:+80428729 | Msa0379340:CDS |
| ATAGAAAATGATGAGGAAGA+CGG | 0.571147 | 3_1:-80428355 | None:intergenic |
| CCTTGGCGAGGAATCATACA+AGG | 0.572604 | 3_1:+80430186 | Msa0379340:CDS |
| TCGGGAAGAGAACGTTTACA+TGG | 0.578574 | 3_1:+80428480 | Msa0379340:CDS |
| GTAGCCTACAAGAACGTCAT+CGG | 0.580177 | 3_1:+80428616 | Msa0379340:CDS |
| ATTGCTGAACTGGATACCCT+TGG | 0.584167 | 3_1:+80430169 | Msa0379340:CDS |
| CTTGTATGATTCCTCGCCAA+GGG | 0.586259 | 3_1:-80430185 | None:intergenic |
| CCAACTCATCCAATTAGGCT+GGG | 0.587390 | 3_1:+80429292 | Msa0379340:CDS |
| TGGCGGCCGCTCATTCACCT+CGG | 0.588265 | 3_1:+80428461 | Msa0379340:CDS |
| CTTGGAATCACCGGAAGCAG+CGG | 0.589029 | 3_1:-80428809 | None:intergenic |
| CTCTCTCTAGAATTCAACAA+TGG | 0.589732 | 3_1:+80428441 | Msa0379340:exon |
| GAGAGAAATAGAAAATGATG+AGG | 0.593628 | 3_1:-80428362 | None:intergenic |
| AAGCAGCGGAAGGAATGAGA+CGG | 0.594104 | 3_1:-80428795 | None:intergenic |
| GACTGGCGCCGAGCGTAAGG+AGG | 0.597871 | 3_1:+80428885 | Msa0379340:CDS |
| CCTTGTATGATTCCTCGCCA+AGG | 0.605796 | 3_1:-80430186 | None:intergenic |
| AAACGTGATCCTCGTTGCCG+CGG | 0.607870 | 3_1:-80428693 | None:intergenic |
| AGATGAAGGGAGATTACCAT+AGG | 0.607967 | 3_1:+80428845 | Msa0379340:CDS |
| GAGAAGGTTCCTCTCTTCGA+CGG | 0.608781 | 3_1:-80428590 | None:intergenic |
| GTTATATTTGAGGGAACTCG+TGG | 0.620508 | 3_1:+80430764 | Msa0379340:three_prime_UTR |
| TCTTGTAGGCTACAGAGAGA+AGG | 0.628236 | 3_1:-80428606 | None:intergenic |
| GAATCACCGGAAGCAGCGGA+AGG | 0.629660 | 3_1:-80428805 | None:intergenic |
| AGGACAAACTAAAACAGCCC+AGG | 0.629679 | 3_1:-80430554 | None:intergenic |
| AATCAATACCTGCATGTCAG+AGG | 0.637050 | 3_1:-80430257 | None:intergenic |
| ATGTAAACGTTCTCTTCCCG+AGG | 0.637688 | 3_1:-80428478 | None:intergenic |
| GCTCCGATTCGATCTTAGAT+CGG | 0.641337 | 3_1:-80428732 | None:intergenic |
| CGATCTTAGATCGGTAGTCA+CGG | 0.645752 | 3_1:-80428723 | None:intergenic |
| CTCTTCCCGAGGTGAATGAG+CGG | 0.645933 | 3_1:-80428467 | None:intergenic |
| AGAGGAGAGCCGCGGCAACG+AGG | 0.653525 | 3_1:+80428684 | Msa0379340:CDS |
| ATCTCGCCGAATTTGGTGAG+CGG | 0.654329 | 3_1:+80430683 | Msa0379340:three_prime_UTR |
| GAGCTTTCTAACATCTGTGA+CGG | 0.658608 | 3_1:+80428751 | Msa0379340:CDS |
| TCTCTAGAATTCAACAATGG+CGG | 0.659956 | 3_1:+80428444 | Msa0379340:exon |
| GAACAGAAAGAGGAGAGCCG+CGG | 0.660532 | 3_1:+80428676 | Msa0379340:CDS |
| AACCTGAGCAGATTTGTAAG+CGG | 0.663795 | 3_1:-80428926 | None:intergenic |
| TGAACTGGATACCCTTGGCG+AGG | 0.679766 | 3_1:+80430174 | Msa0379340:CDS |
| CGAACGCTACGAAGAAATGG+TGG | 0.680192 | 3_1:+80428522 | Msa0379340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTTGTATATGAAATATA+TGG | + | chr3_1:80429183-80429202 | Msa0379340:intron | 15.0% |
| !!! | GTTATTTTGTAGTTATTTTA+AGG | + | chr3_1:80429432-80429451 | Msa0379340:intron | 15.0% |
| !! | CATTTCAAAATGAAATTTAA+AGG | - | chr3_1:80430027-80430046 | None:intergenic | 15.0% |
| !! | AGAAGAAAACAAAAATATAT+GGG | - | chr3_1:80430306-80430325 | None:intergenic | 15.0% |
| !! | ATTTGTAAAACACTTAAAAA+TGG | - | chr3_1:80430581-80430600 | None:intergenic | 15.0% |
| !!! | AAGTTTTATTAATATGGAAT+TGG | + | chr3_1:80430627-80430646 | Msa0379340:three_prime_UTR | 15.0% |
| !!! | GGATATTAGTTTTTTTTTAT+GGG | + | chr3_1:80430704-80430723 | Msa0379340:three_prime_UTR | 15.0% |
| !!! | TTTTTAGGTTTTTTAATTGT+TGG | + | chr3_1:80430816-80430835 | Msa0379340:three_prime_UTR | 15.0% |
| !! | AAACAACAAAAAGGAAAAAA+CGG | - | chr3_1:80428954-80428973 | None:intergenic | 20.0% |
| !! | AATAAGATGTATATCCAAAA+AGG | - | chr3_1:80429458-80429477 | None:intergenic | 20.0% |
| !! | AATAATAAGGATACCAAAAA+AGG | - | chr3_1:80429809-80429828 | None:intergenic | 20.0% |
| !! | TTTAAAGGAATAAATTCCAT+GGG | - | chr3_1:80430012-80430031 | None:intergenic | 20.0% |
| !! | ATTTAAAGGAATAAATTCCA+TGG | - | chr3_1:80430013-80430032 | None:intergenic | 20.0% |
| !!! | CTCATGAATATTTTTTTGTT+TGG | + | chr3_1:80430121-80430140 | Msa0379340:intron | 20.0% |
| !! | GAGAAGAAAACAAAAATATA+TGG | - | chr3_1:80430307-80430326 | None:intergenic | 20.0% |
| !!! | TTTAATCAATGTATTGATCT+TGG | + | chr3_1:80430328-80430347 | Msa0379340:intron | 20.0% |
| !!! | ACACTGAAGTTTTATTAATA+TGG | + | chr3_1:80430621-80430640 | Msa0379340:three_prime_UTR | 20.0% |
| !!! | CGGATATTAGTTTTTTTTTA+TGG | + | chr3_1:80430703-80430722 | Msa0379340:three_prime_UTR | 20.0% |
| !!! | ATTATCACTTGTTATATTTG+AGG | + | chr3_1:80430754-80430773 | Msa0379340:three_prime_UTR | 20.0% |
| !!! | TTATCACTTGTTATATTTGA+GGG | + | chr3_1:80430755-80430774 | Msa0379340:three_prime_UTR | 20.0% |
| ! | CAAAATCGAAAACAACAAAA+AGG | - | chr3_1:80428963-80428982 | None:intergenic | 25.0% |
| !! | TTTTGTGATTCAAATCTGTT+AGG | + | chr3_1:80428978-80428997 | Msa0379340:intron | 25.0% |
| !! | GCAATATTTTTCACAATCTT+TGG | + | chr3_1:80429145-80429164 | Msa0379340:intron | 25.0% |
| !! | TGAAATATATGGAGTATTTG+TGG | + | chr3_1:80429194-80429213 | Msa0379340:intron | 25.0% |
| !!! | TAGTTATTTTAAGGCCTTTT+TGG | + | chr3_1:80429441-80429460 | Msa0379340:intron | 25.0% |
| !! | CTGAAAACATTTTATGAACA+TGG | + | chr3_1:80429568-80429587 | Msa0379340:intron | 25.0% |
| !! | AATACTTGACAACTCATTTT+AGG | - | chr3_1:80429848-80429867 | None:intergenic | 25.0% |
| !! | AGTTGTCAAGTATTGTTTAT+TGG | + | chr3_1:80429854-80429873 | Msa0379340:intron | 25.0% |
| !! | AGTAGTACCTAATGTTATTT+GGG | - | chr3_1:80429980-80429999 | None:intergenic | 25.0% |
| ! | TTAAAGGAATAAATTCCATG+GGG | - | chr3_1:80430011-80430030 | None:intergenic | 25.0% |
| !!! | ATGAGTTTTTTCTGTTCTAA+TGG | + | chr3_1:80430082-80430101 | Msa0379340:intron | 25.0% |
| !!! | TTTTTTGTTTGGTAATCACT+AGG | + | chr3_1:80430132-80430151 | Msa0379340:intron | 25.0% |
| !! | AACAAATTTTACTGCCAATT+AGG | + | chr3_1:80430422-80430441 | Msa0379340:exon | 25.0% |
| ! | CTTCATTCATTAACATATAG+AGG | - | chr3_1:80430459-80430478 | None:intergenic | 25.0% |
| ! | CTCTATATGTTAATGAATGA+AGG | + | chr3_1:80430457-80430476 | Msa0379340:three_prime_UTR | 25.0% |
| ! | GTAAAACACTTAAAAATGGA+AGG | - | chr3_1:80430577-80430596 | None:intergenic | 25.0% |
| !! | AATTATTGCCTATTTTCTTG+AGG | + | chr3_1:80430598-80430617 | Msa0379340:three_prime_UTR | 25.0% |
| GAGAGAAATAGAAAATGATG+AGG | - | chr3_1:80428365-80428384 | None:intergenic | 30.0% | |
| ! | GTTTTCTACCTTAAGATGAA+GGG | + | chr3_1:80428832-80428851 | Msa0379340:CDS | 30.0% |
| TTTGTGGATCTGTAATTGAA+AGG | + | chr3_1:80429210-80429229 | Msa0379340:intron | 30.0% | |
| TGTAATTGAAAGGTTTGTGA+TGG | + | chr3_1:80429220-80429239 | Msa0379340:intron | 30.0% | |
| !!! | AATGTGTTCCTTTGTTTTAC+AGG | + | chr3_1:80429246-80429265 | Msa0379340:intron | 30.0% |
| CTTATTTCCATTACTTCTAC+AGG | - | chr3_1:80429548-80429567 | None:intergenic | 30.0% | |
| ACTCTGATCAAATAGTGTAA+GGG | - | chr3_1:80429650-80429669 | None:intergenic | 30.0% | |
| AACTCTGATCAAATAGTGTA+AGG | - | chr3_1:80429651-80429670 | None:intergenic | 30.0% | |
| ! | ACACTATTTGATCAGAGTTT+TGG | + | chr3_1:80429652-80429671 | Msa0379340:intron | 30.0% |
| AATAAGGATACCAAAAAAGG+AGG | - | chr3_1:80429806-80429825 | None:intergenic | 30.0% | |
| ! | TGTCAAGTATTGTTTATTGG+TGG | + | chr3_1:80429857-80429876 | Msa0379340:intron | 30.0% |
| GAGTAGTACCTAATGTTATT+TGG | - | chr3_1:80429981-80430000 | None:intergenic | 30.0% | |
| !! | TGTATTGATCTTGGTTTGTT+TGG | + | chr3_1:80430337-80430356 | Msa0379340:intron | 30.0% |
| ! | AGCTGCTTCTTTAATTTCAT+CGG | - | chr3_1:80430379-80430398 | None:intergenic | 30.0% |
| ATTTGTTTACTGCTGTTCAT+CGG | - | chr3_1:80430409-80430428 | None:intergenic | 30.0% | |
| TGTTAATGAATGAAGGAAGA+AGG | + | chr3_1:80430464-80430483 | Msa0379340:three_prime_UTR | 30.0% | |
| !!! | GAAAGTGAGATCTGGTTTTA+GGG | - | chr3_1:80428422-80428441 | None:intergenic | 35.0% |
| !!! | AGAAAGTGAGATCTGGTTTT+AGG | - | chr3_1:80428423-80428442 | None:intergenic | 35.0% |
| !! | CTCTCTCTAGAATTCAACAA+TGG | + | chr3_1:80428441-80428460 | Msa0379340:exon | 35.0% |
| !! | TCTCTAGAATTCAACAATGG+CGG | + | chr3_1:80428444-80428463 | Msa0379340:exon | 35.0% |
| CATCTTAAGGTAGAAAACCT+TGG | - | chr3_1:80428830-80428849 | None:intergenic | 35.0% | |
| ! | GGTTTTCTACCTTAAGATGA+AGG | + | chr3_1:80428831-80428850 | Msa0379340:CDS | 35.0% |
| TGCAATGTCCTGTAAAACAA+AGG | - | chr3_1:80429257-80429276 | None:intergenic | 35.0% | |
| ACTTCTACAGGAAAACAGTT+TGG | - | chr3_1:80429536-80429555 | None:intergenic | 35.0% | |
| ! | CTGTTTTCCTGTAGAAGTAA+TGG | + | chr3_1:80429538-80429557 | Msa0379340:intron | 35.0% |
| TGGATTCTACTAACCACTTA+TGG | + | chr3_1:80429774-80429793 | Msa0379340:intron | 35.0% | |
| AGGTCAAGTAGGCAATAATA+AGG | - | chr3_1:80429822-80429841 | None:intergenic | 35.0% | |
| !! | ATTTTAGGTGTAGGTCAAGT+AGG | - | chr3_1:80429833-80429852 | None:intergenic | 35.0% |
| !! | TGACAACTCATTTTAGGTGT+AGG | - | chr3_1:80429842-80429861 | None:intergenic | 35.0% |
| !! | ATCTTGGTTTGTTTGGTTTC+AGG | + | chr3_1:80430344-80430363 | Msa0379340:intron | 35.0% |
| ! | TTTGTTTGGTTTCAGGATGA+TGG | + | chr3_1:80430351-80430370 | Msa0379340:intron | 35.0% |
| TTTGTTTACTGCTGTTCATC+GGG | - | chr3_1:80430408-80430427 | None:intergenic | 35.0% | |
| AGGAGAAGTTTGATCCTAAT+TGG | - | chr3_1:80430439-80430458 | None:intergenic | 35.0% | |
| TTCATGTCTGTTATGAGTTC+TGG | + | chr3_1:80430527-80430546 | Msa0379340:three_prime_UTR | 35.0% | |
| TTCAGTGTCCTCAAGAAAAT+AGG | - | chr3_1:80430609-80430628 | None:intergenic | 35.0% | |
| TAATATCCGCTCACCAAATT+CGG | - | chr3_1:80430692-80430711 | None:intergenic | 35.0% | |
| !!! | GAGGAATTCACGTTGTTTTT+AGG | + | chr3_1:80430801-80430820 | Msa0379340:three_prime_UTR | 35.0% |
| TAGAGAGAGAAAGTGAGATC+TGG | - | chr3_1:80428430-80428449 | None:intergenic | 40.0% | |
| ! | CTACCGATCTAAGATCGAAT+CGG | + | chr3_1:80428729-80428748 | Msa0379340:CDS | 40.0% |
| GAGCTTTCTAACATCTGTGA+CGG | + | chr3_1:80428751-80428770 | Msa0379340:CDS | 40.0% | |
| GTAGAAAACCTTGGAATCAC+CGG | - | chr3_1:80428821-80428840 | None:intergenic | 40.0% | |
| GGTAATCTCCCTTCATCTTA+AGG | - | chr3_1:80428843-80428862 | None:intergenic | 40.0% | |
| AGATGAAGGGAGATTACCAT+AGG | + | chr3_1:80428845-80428864 | Msa0379340:CDS | 40.0% | |
| TGAACTCAGCAAGATACCTA+TGG | - | chr3_1:80428864-80428883 | None:intergenic | 40.0% | |
| TATCTTGCTGAGTTCAAGAC+TGG | + | chr3_1:80428868-80428887 | Msa0379340:CDS | 40.0% | |
| AACCTGAGCAGATTTGTAAG+CGG | - | chr3_1:80428929-80428948 | None:intergenic | 40.0% | |
| AACCTGTTTAGCAAGATTGC+AGG | - | chr3_1:80429374-80429393 | None:intergenic | 40.0% | |
| ! | GCAACAATGATGTTGCGTTT+TGG | + | chr3_1:80429754-80429773 | Msa0379340:intron | 40.0% |
| !!! | ATGGATCAGACCTCCTTTTT+TGG | + | chr3_1:80429793-80429812 | Msa0379340:intron | 40.0% |
| ! | TGTTTATTGGTGGTTAGCTC+AGG | + | chr3_1:80429867-80429886 | Msa0379340:intron | 40.0% |
| GAAGTTATGCTCTTGCTACT+AGG | - | chr3_1:80430059-80430078 | None:intergenic | 40.0% | |
| TGATGAAGCAATTGCTGAAC+TGG | + | chr3_1:80430159-80430178 | Msa0379340:CDS | 40.0% | |
| TTCGTGATAATCTCACCCTA+TGG | + | chr3_1:80430233-80430252 | Msa0379340:CDS | 40.0% | |
| AATCAATACCTGCATGTCAG+AGG | - | chr3_1:80430260-80430279 | None:intergenic | 40.0% | |
| ! | TGCTTGTTGCCAATCTCTTT+GGG | + | chr3_1:80430487-80430506 | Msa0379340:three_prime_UTR | 40.0% |
| !!! | TCTTTGGGTGCTGAGATTTT+AGG | + | chr3_1:80430502-80430521 | Msa0379340:three_prime_UTR | 40.0% |
| !! | TTATGAGTTCTGGATGTCCT+GGG | + | chr3_1:80430537-80430556 | Msa0379340:three_prime_UTR | 40.0% |
| AAACTTGATCTCGCCGAATT+TGG | + | chr3_1:80430676-80430695 | Msa0379340:three_prime_UTR | 40.0% | |
| ! | TTTTATGGGTCATGAACTCG+TGG | + | chr3_1:80430718-80430737 | Msa0379340:three_prime_UTR | 40.0% |
| GTTATATTTGAGGGAACTCG+TGG | + | chr3_1:80430764-80430783 | Msa0379340:three_prime_UTR | 40.0% | |
| ! | CGTGGTAGTTTTTGTATGTG+AGG | + | chr3_1:80430782-80430801 | Msa0379340:three_prime_UTR | 40.0% |
| ATGTAAACGTTCTCTTCCCG+AGG | - | chr3_1:80428481-80428500 | None:intergenic | 45.0% | |
| TCGGGAAGAGAACGTTTACA+TGG | + | chr3_1:80428480-80428499 | Msa0379340:CDS | 45.0% | |
| CACCATTTCTTCGTAGCGTT+CGG | - | chr3_1:80428524-80428543 | None:intergenic | 45.0% | |
| ! | CGAAGAAATGGTGGAGTTCA+TGG | + | chr3_1:80428531-80428550 | Msa0379340:CDS | 45.0% |
| GACGGTGAGTTCTTCGTTAT+CGG | - | chr3_1:80428575-80428594 | None:intergenic | 45.0% | |
| TCTTGTAGGCTACAGAGAGA+AGG | - | chr3_1:80428609-80428628 | None:intergenic | 45.0% | |
| GTAGCCTACAAGAACGTCAT+CGG | + | chr3_1:80428616-80428635 | Msa0379340:CDS | 45.0% | |
| TTCCTCGATCGAACAGAAAG+AGG | + | chr3_1:80428666-80428685 | Msa0379340:CDS | 45.0% | |
| CGATCTTAGATCGGTAGTCA+CGG | - | chr3_1:80428726-80428745 | None:intergenic | 45.0% | |
| ! | GCTCCGATTCGATCTTAGAT+CGG | - | chr3_1:80428735-80428754 | None:intergenic | 45.0% |
| TGCCACCAACTCATCCAATT+AGG | + | chr3_1:80429287-80429306 | Msa0379340:CDS | 45.0% | |
| ! | AGCCTAATTGGATGAGTTGG+TGG | - | chr3_1:80429292-80429311 | None:intergenic | 45.0% |
| ACCAACTCATCCAATTAGGC+TGG | + | chr3_1:80429291-80429310 | Msa0379340:CDS | 45.0% | |
| CCAACTCATCCAATTAGGCT+GGG | + | chr3_1:80429292-80429311 | Msa0379340:CDS | 45.0% | |
| TGCCTGCAATCTTGCTAAAC+AGG | + | chr3_1:80429369-80429388 | Msa0379340:CDS | 45.0% | |
| AAGGAGGTCTGATCCATAAG+TGG | - | chr3_1:80429790-80429809 | None:intergenic | 45.0% | |
| GGTGGTGCCCAAATAACATT+AGG | + | chr3_1:80429970-80429989 | Msa0379340:intron | 45.0% | |
| ATTGCTGAACTGGATACCCT+TGG | + | chr3_1:80430169-80430188 | Msa0379340:CDS | 45.0% | |
| CTTGTATGATTCCTCGCCAA+GGG | - | chr3_1:80430188-80430207 | None:intergenic | 45.0% | |
| TACTGCTGTTCATCGGGTTT+AGG | - | chr3_1:80430402-80430421 | None:intergenic | 45.0% | |
| ! | GTGCTTGTTGCCAATCTCTT+TGG | + | chr3_1:80430486-80430505 | Msa0379340:three_prime_UTR | 45.0% |
| ATCTCAGCACCCAAAGAGAT+TGG | - | chr3_1:80430499-80430518 | None:intergenic | 45.0% | |
| !! | GTTATGAGTTCTGGATGTCC+TGG | + | chr3_1:80430536-80430555 | Msa0379340:three_prime_UTR | 45.0% |
| AGGACAAACTAAAACAGCCC+AGG | - | chr3_1:80430557-80430576 | None:intergenic | 45.0% | |
| ! | TTCGTAGCGTTCGGCTTGTT+CGG | - | chr3_1:80428515-80428534 | None:intergenic | 50.0% |
| AGCCGAACGCTACGAAGAAA+TGG | + | chr3_1:80428519-80428538 | Msa0379340:CDS | 50.0% | |
| CGAACGCTACGAAGAAATGG+TGG | + | chr3_1:80428522-80428541 | Msa0379340:CDS | 50.0% | |
| ! | TTCTTCGTTATCGGCGTTGG+CGG | - | chr3_1:80428566-80428585 | None:intergenic | 50.0% |
| GAGTTCTTCGTTATCGGCGT+TGG | - | chr3_1:80428569-80428588 | None:intergenic | 50.0% | |
| AAGAACTCACCGTCGAAGAG+AGG | + | chr3_1:80428581-80428600 | Msa0379340:CDS | 50.0% | |
| GAGAAGGTTCCTCTCTTCGA+CGG | - | chr3_1:80428593-80428612 | None:intergenic | 50.0% | |
| TGCTCCGATGACGTTCTTGT+AGG | - | chr3_1:80428623-80428642 | None:intergenic | 50.0% | |
| CTCCTCTTTCTGTTCGATCG+AGG | - | chr3_1:80428671-80428690 | None:intergenic | 50.0% | |
| AGATCGGTAGTCACGGATGA+CGG | - | chr3_1:80428719-80428738 | None:intergenic | 50.0% | |
| AAGCAGCGGAAGGAATGAGA+CGG | - | chr3_1:80428798-80428817 | None:intergenic | 50.0% | |
| CCCAGCCTAATTGGATGAGT+TGG | - | chr3_1:80429295-80429314 | None:intergenic | 50.0% | |
| AGAGCAAGACCCAGCCTAAT+TGG | - | chr3_1:80429304-80429323 | None:intergenic | 50.0% | |
| ACACCTTGCTCTAGCCTGTA+GGG | + | chr3_1:80429944-80429963 | Msa0379340:intron | 50.0% | |
| TACTACTCGTGTAGTCCCCA+TGG | + | chr3_1:80429993-80430012 | Msa0379340:intron | 50.0% | |
| CCTTGTATGATTCCTCGCCA+AGG | - | chr3_1:80430189-80430208 | None:intergenic | 50.0% | |
| CCTTGGCGAGGAATCATACA+AGG | + | chr3_1:80430186-80430205 | Msa0379340:CDS | 50.0% | |
| CTGCATGTCAGAGGTCCATA+GGG | - | chr3_1:80430251-80430270 | None:intergenic | 50.0% | |
| ! | ATCTCGCCGAATTTGGTGAG+CGG | + | chr3_1:80430683-80430702 | Msa0379340:three_prime_UTR | 50.0% |
| ATGGGTCATGAACTCGTGGT+AGG | + | chr3_1:80430722-80430741 | Msa0379340:three_prime_UTR | 50.0% | |
| TGGGTCATGAACTCGTGGTA+GGG | + | chr3_1:80430723-80430742 | Msa0379340:three_prime_UTR | 50.0% | |
| CTCTTCCCGAGGTGAATGAG+CGG | - | chr3_1:80428470-80428489 | None:intergenic | 55.0% | |
| GAACAGAAAGAGGAGAGCCG+CGG | + | chr3_1:80428676-80428695 | Msa0379340:CDS | 55.0% | |
| AAACGTGATCCTCGTTGCCG+CGG | - | chr3_1:80428696-80428715 | None:intergenic | 55.0% | |
| AGCAGCGGAAGGAATGAGAC+GGG | - | chr3_1:80428797-80428816 | None:intergenic | 55.0% | |
| CTCATTCCTTCCGCTGCTTC+CGG | + | chr3_1:80428799-80428818 | Msa0379340:CDS | 55.0% | |
| CTTGGAATCACCGGAAGCAG+CGG | - | chr3_1:80428812-80428831 | None:intergenic | 55.0% | |
| CGCCGCTTACAAATCTGCTC+AGG | + | chr3_1:80428924-80428943 | Msa0379340:CDS | 55.0% | |
| GCAAGATTGCAGGCACGATC+AGG | - | chr3_1:80429364-80429383 | None:intergenic | 55.0% | |
| GACACCTTGCTCTAGCCTGT+AGG | + | chr3_1:80429943-80429962 | Msa0379340:intron | 55.0% | |
| AGTCCCTACAGGCTAGAGCA+AGG | - | chr3_1:80429950-80429969 | None:intergenic | 55.0% | |
| TTGCTCTAGCCTGTAGGGAC+TGG | + | chr3_1:80429949-80429968 | Msa0379340:intron | 55.0% | |
| TGAACTGGATACCCTTGGCG+AGG | + | chr3_1:80430174-80430193 | Msa0379340:CDS | 55.0% | |
| CCTGCATGTCAGAGGTCCAT+AGG | - | chr3_1:80430252-80430271 | None:intergenic | 55.0% | |
| CCTATGGACCTCTGACATGC+AGG | + | chr3_1:80430249-80430268 | Msa0379340:CDS | 55.0% | |
| GAATCACCGGAAGCAGCGGA+AGG | - | chr3_1:80428808-80428827 | None:intergenic | 60.0% | |
| CGCTGCTTCCGGTGATTCCA+AGG | + | chr3_1:80428810-80428829 | Msa0379340:CDS | 60.0% | |
| CTCAGCAGCCTCCTTACGCT+CGG | - | chr3_1:80428896-80428915 | None:intergenic | 60.0% | |
| CTCTAGCCTGTAGGGACTGG+TGG | + | chr3_1:80429952-80429971 | Msa0379340:intron | 60.0% | |
| TGGCGGCCGCTCATTCACCT+CGG | + | chr3_1:80428461-80428480 | Msa0379340:CDS | 65.0% | |
| TCGGAGCACGACGTGCTTCG+TGG | + | chr3_1:80428635-80428654 | Msa0379340:CDS | 65.0% | |
| ! | CAAGACTGGCGCCGAGCGTA+AGG | + | chr3_1:80428882-80428901 | Msa0379340:CDS | 65.0% |
| TGGGCACCACCAGTCCCTAC+AGG | - | chr3_1:80429961-80429980 | None:intergenic | 65.0% | |
| GGCGGCCGCTCATTCACCTC+GGG | + | chr3_1:80428462-80428481 | Msa0379340:CDS | 70.0% | |
| AGAGGAGAGCCGCGGCAACG+AGG | + | chr3_1:80428684-80428703 | Msa0379340:CDS | 70.0% | |
| ! | GACTGGCGCCGAGCGTAAGG+AGG | + | chr3_1:80428885-80428904 | Msa0379340:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 80428357 | 80430907 | 80428357 | ID=Msa0379340;Name=Msa0379340 |
| chr3_1 | mRNA | 80428357 | 80430907 | 80428357 | ID=Msa0379340-mRNA-1;Parent=Msa0379340;Name=Msa0379340-mRNA-1;_AED=0.04;_eAED=0.04;_QI=103|1|1|1|1|1|4|485|260 |
| chr3_1 | exon | 80428357 | 80428945 | 80428357 | ID=Msa0379340-mRNA-1:exon:20051;Parent=Msa0379340-mRNA-1 |
| chr3_1 | exon | 80429268 | 80429390 | 80429268 | ID=Msa0379340-mRNA-1:exon:20052;Parent=Msa0379340-mRNA-1 |
| chr3_1 | exon | 80430154 | 80430270 | 80430154 | ID=Msa0379340-mRNA-1:exon:20053;Parent=Msa0379340-mRNA-1 |
| chr3_1 | exon | 80430366 | 80430907 | 80430366 | ID=Msa0379340-mRNA-1:exon:20054;Parent=Msa0379340-mRNA-1 |
| chr3_1 | five_prime_UTR | 80428357 | 80428459 | 80428357 | ID=Msa0379340-mRNA-1:five_prime_utr;Parent=Msa0379340-mRNA-1 |
| chr3_1 | CDS | 80428460 | 80428945 | 80428460 | ID=Msa0379340-mRNA-1:cds;Parent=Msa0379340-mRNA-1 |
| chr3_1 | CDS | 80429268 | 80429390 | 80429268 | ID=Msa0379340-mRNA-1:cds;Parent=Msa0379340-mRNA-1 |
| chr3_1 | CDS | 80430154 | 80430270 | 80430154 | ID=Msa0379340-mRNA-1:cds;Parent=Msa0379340-mRNA-1 |
| chr3_1 | CDS | 80430366 | 80430422 | 80430366 | ID=Msa0379340-mRNA-1:cds;Parent=Msa0379340-mRNA-1 |
| chr3_1 | three_prime_UTR | 80430423 | 80430907 | 80430423 | ID=Msa0379340-mRNA-1:three_prime_utr;Parent=Msa0379340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
