AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1290920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1290920 MtrunA17_Chr8g0365241 77.871 357 12 3 1 290 6 362 0.0 536
Msa1290920 MtrunA17_Chr5g0420981 72.905 358 29 4 1 290 1 358 0.0 502
Msa1290920 MtrunA17_Chr5g0420951 67.039 358 50 4 1 290 1 358 2.57e-164 460
Msa1290920 MtrunA17_Chr5g0423191 53.693 352 95 4 6 290 1 351 1.17e-125 362
Msa1290920 MtrunA17_Chr5g0421101 53.736 348 93 4 10 290 5 351 6.32e-119 345
Msa1290920 MtrunA17_Chr5g0420941 50.720 347 103 4 11 290 4 349 3.70e-117 340
Msa1290920 MtrunA17_Chr5g0421041 51.143 350 101 5 8 290 3 349 7.68e-116 337
Msa1290920 MtrunA17_Chr5g0421011 53.409 352 96 4 6 290 1 351 1.10e-115 337
Msa1290920 MtrunA17_Chr5g0423251 50.286 350 106 4 8 290 3 351 2.36e-114 333
Msa1290920 MtrunA17_Chr5g0420901 49.857 349 106 5 10 290 3 350 2.78e-114 333
Msa1290920 MtrunA17_Chr5g0423211 49.148 352 105 6 10 289 3 352 3.33e-111 325
Msa1290920 MtrunA17_Chr8g0375671 48.424 349 110 4 12 290 12 360 4.05e-111 325
Msa1290920 MtrunA17_Chr5g0423221 50.716 349 103 5 10 290 29 376 5.97e-111 325
Msa1290920 MtrunA17_Chr5g0423201 49.570 349 107 5 10 290 5 352 1.90e-109 321
Msa1290920 MtrunA17_Chr5g0421091 48.851 348 109 5 11 290 4 350 1.92e-109 321
Msa1290920 MtrunA17_Chr2g0314401 48.844 346 109 4 10 287 9 354 4.85e-109 320
Msa1290920 MtrunA17_Chr2g0314391 48.424 349 112 5 10 290 28 376 3.92e-103 306
Msa1290920 MtrunA17_Chr2g0314381 47.714 350 114 5 10 290 34 383 4.52e-100 298
Msa1290920 MtrunA17_Chr8g0375601 45.977 348 116 5 15 290 8 355 1.50e-99 296
Msa1290920 MtrunA17_Chr8g0375571 46.398 347 116 4 11 287 4 350 7.77e-98 291
Msa1290920 MtrunA17_Chr1g0162191 45.299 351 118 7 6 287 5 350 5.20e-92 276
Msa1290920 MtrunA17_Chr5g0420721 53.200 250 73 2 85 290 4 253 5.73e-89 265
Msa1290920 MtrunA17_Chr8g0375681 49.020 255 86 3 80 290 34 288 1.86e-80 245
Msa1290920 MtrunA17_Chr2g0314371 47.955 269 78 4 10 216 9 277 8.53e-74 229
Msa1290920 MtrunA17_Chr8g0375701 35.072 345 154 6 11 287 13 355 9.51e-70 219
Msa1290920 MtrunA17_Chr3g0087031 33.238 349 164 7 7 287 13 360 2.26e-57 188
Msa1290920 MtrunA17_Chr2g0296371 31.503 346 163 7 15 288 14 357 6.95e-52 174
Msa1290920 MtrunA17_Chr5g0420881 53.061 147 40 1 173 290 1 147 8.12e-52 167
Msa1290920 MtrunA17_Chr7g0239101 31.884 345 166 5 12 288 14 357 1.07e-51 173
Msa1290920 MtrunA17_Chr7g0239821 30.460 348 167 6 12 288 23 366 9.52e-51 171
Msa1290920 MtrunA17_Chr7g0239111 30.435 345 171 5 12 288 14 357 1.10e-50 171
Msa1290920 MtrunA17_Chr7g0239121 29.023 348 177 5 12 290 10 356 3.67e-47 161
Msa1290920 MtrunA17_Chr8g0375641 47.561 164 60 2 1 138 1 164 1.21e-45 152
Msa1290920 MtrunA17_Chr8g0375661 49.020 153 52 2 12 138 12 164 3.06e-44 148
Msa1290920 MtrunA17_Chr7g0232161 35.391 243 117 4 12 215 19 260 4.80e-42 147
Msa1290920 MtrunA17_Chr5g0420891 46.667 165 61 4 10 148 3 166 8.59e-40 136
Msa1290920 MtrunA17_Chr5g0437181 28.483 323 158 7 18 267 14 336 1.36e-38 139
Msa1290920 MtrunA17_Chr7g0242551 27.744 328 159 8 18 267 15 342 6.12e-38 137
Msa1290920 MtrunA17_Chr3g0145171 29.866 298 138 7 51 279 51 346 2.44e-37 135
Msa1290920 MtrunA17_Chr3g0128001 29.874 318 153 6 27 277 13 327 2.66e-36 132
Msa1290920 MtrunA17_Chr4g0006371 27.647 340 159 8 15 267 11 350 1.15e-35 131
Msa1290920 MtrunA17_Chr7g0239071 27.843 255 140 2 80 290 50 304 5.64e-35 128
Msa1290920 MtrunA17_Chr3g0109041 27.586 348 173 9 18 289 10 354 8.69e-35 129
Msa1290920 MtrunA17_Chr3g0113641 25.731 342 181 6 18 286 15 356 7.08e-34 126
Msa1290920 MtrunA17_Chr8g0370721 28.105 306 149 7 51 287 51 354 1.09e-32 123
Msa1290920 MtrunA17_Chr8g0370711 27.778 306 150 7 51 287 51 354 5.13e-32 121
Msa1290920 MtrunA17_Chr7g0239091 26.113 337 176 6 16 287 123 451 1.18e-31 122
Msa1290920 MtrunA17_Chr5g0426891 27.988 343 172 12 17 287 3 342 7.99e-31 118
Msa1290920 MtrunA17_Chr8g0375591 49.606 127 37 3 12 111 5 131 3.25e-29 108
Msa1290920 MtrunA17_Chr8g0345831 27.059 340 178 8 12 283 2 339 3.25e-29 113
Msa1290920 MtrunA17_Chr4g0064781 27.378 347 174 10 13 289 12 350 5.59e-28 110
Msa1290920 MtrunA17_Chr5g0398291 27.554 323 152 9 18 259 8 329 1.09e-27 109
Msa1290920 MtrunA17_Chr5g0420731 65.823 79 26 1 6 84 1 78 2.45e-27 102
Msa1290920 MtrunA17_Chr1g0179801 24.716 352 180 10 17 287 26 373 3.75e-27 108
Msa1290920 MtrunA17_Chr3g0145181 32.479 234 108 9 81 267 104 334 2.54e-25 103
Msa1290920 MtrunA17_Chr3g0145201 32.479 234 108 9 81 267 739 969 9.96e-25 103
Msa1290920 MtrunA17_Chr8g0375581 64.179 67 24 0 149 215 1 67 7.94e-24 92.4
Msa1290920 MtrunA17_Chr2g0314361 57.746 71 30 0 217 287 9 79 1.11e-23 92.0
Msa1290920 MtrunA17_Chr7g0265221 22.599 354 174 9 26 287 35 380 1.80e-22 95.9
Msa1290920 MtrunA17_Chr2g0332191 24.169 331 163 10 26 277 25 346 9.75e-22 93.6
Msa1290920 MtrunA17_Chr3g0114861 23.867 331 176 8 15 274 3 328 1.86e-21 92.4
Msa1290920 MtrunA17_Chr4g0050031 24.837 306 159 9 52 287 62 366 2.95e-21 92.4
Msa1290920 MtrunA17_Chr1g0204181 27.660 235 118 5 80 263 113 346 7.19e-21 91.3
Msa1290920 MtrunA17_Chr1g0170631 30.108 186 96 4 137 290 12 195 3.51e-20 86.3
Msa1290920 MtrunA17_Chr7g0266651 23.410 346 188 10 17 289 23 364 3.85e-20 89.0
Msa1290920 MtrunA17_Chr1g0187831 24.633 341 170 11 26 286 40 373 7.35e-20 88.6
Msa1290920 MtrunA17_Chr3g0125201 27.815 302 152 10 52 288 3 303 8.65e-20 87.4
Msa1290920 MtrunA17_Chr1g0187821 25.484 310 153 11 51 287 66 370 1.19e-19 87.8
Msa1290920 MtrunA17_Chr7g0250511 22.581 341 192 10 17 287 13 351 1.42e-19 87.4
Msa1290920 MtrunA17_Chr8g0354261 22.222 351 191 9 17 290 32 377 2.23e-19 87.0
Msa1290920 MtrunA17_Chr2g0289341 23.729 295 161 8 49 279 1 295 2.61e-19 86.3
Msa1290920 MtrunA17_Chr8g0351101 23.492 315 160 8 26 263 30 340 3.48e-19 86.7
Msa1290920 MtrunA17_Chr4g0045411 24.510 306 147 9 44 267 22 325 5.76e-19 85.5
Msa1290920 MtrunA17_Chr5g0424201 26.778 239 122 8 80 268 92 327 1.25e-18 84.7
Msa1290920 MtrunA17_Chr4g0066991 25.159 314 184 8 17 279 32 345 1.53e-18 84.3
Msa1290920 MtrunA17_Chr8g0375621 62.500 56 21 0 149 204 1 56 2.57e-18 77.4
Msa1290920 MtrunA17_Chr8g0336851 24.501 351 186 11 1 278 11 355 2.69e-18 84.0
Msa1290920 MtrunA17_Chr8g0336631 24.251 334 177 10 17 278 27 356 5.51e-18 83.2
Msa1290920 MtrunA17_Chr6g0474391 23.053 321 149 7 39 263 33 351 5.59e-18 83.2
Msa1290920 MtrunA17_Chr3g0126741 25.902 305 153 10 52 286 59 360 9.21e-18 82.4
Msa1290920 MtrunA17_Chr3g0130391 24.026 308 178 7 14 269 56 359 1.03e-17 82.4
Msa1290920 MtrunA17_Chr5g0412651 25.378 331 158 12 25 275 12 333 2.19e-17 81.3
Msa1290920 MtrunA17_Chr7g0265351 28.685 251 126 8 81 283 88 333 2.33e-17 80.9
Msa1290920 MtrunA17_Chr8g0371931 27.358 212 107 3 81 246 93 303 2.71e-17 80.9
Msa1290920 MtrunA17_Chr4g0045461 31.875 160 77 3 140 268 168 326 5.44e-17 80.1
Msa1290920 MtrunA17_Chr3g0121141 23.469 294 161 9 49 279 1 293 5.84e-17 79.7
Msa1290920 MtrunA17_Chr1g0162351 24.917 301 135 12 45 256 62 360 6.13e-17 80.1
Msa1290920 MtrunA17_Chr3g0093761 26.800 250 131 7 81 283 105 349 6.40e-17 79.7
Msa1290920 MtrunA17_Chr1g0162321 25.166 302 133 12 45 256 62 360 1.53e-16 79.0
Msa1290920 MtrunA17_Chr8g0336861 23.636 330 178 9 17 275 27 353 1.67e-16 79.0
Msa1290920 MtrunA17_Chr3g0102041 27.358 212 107 5 81 246 93 303 2.01e-16 78.6
Msa1290920 MtrunA17_Chr8g0336781 22.523 333 184 9 17 278 62 391 2.14e-16 78.6
Msa1290920 MtrunA17_Chr2g0311921 21.637 342 196 8 17 287 18 358 2.39e-16 78.2
Msa1290920 MtrunA17_Chr2g0311861 24.281 313 184 9 17 278 28 338 2.95e-16 77.8
Msa1290920 MtrunA17_Chr8g0336751 23.582 335 179 10 17 278 58 388 3.61e-16 78.2
Msa1290920 MtrunA17_Chr4g0045471 24.000 300 130 12 52 259 26 319 7.11e-16 77.0
Msa1290920 MtrunA17_Chr3g0093741 27.092 251 130 8 81 283 105 350 8.81e-16 76.6
Msa1290920 MtrunA17_Chr8g0348081 23.353 334 179 10 17 278 27 355 9.38e-16 76.6
Msa1290920 MtrunA17_Chr1g0191201 25.105 239 126 6 66 252 92 329 1.02e-15 76.6
Msa1290920 MtrunA17_Chr6g0472861 23.446 354 185 13 17 289 27 375 2.51e-15 75.5
Msa1290920 MtrunA17_Chr1g0161041 29.487 156 78 5 159 283 237 391 2.62e-15 75.5
Msa1290920 MtrunA17_Chr3g0125421 24.900 249 124 7 82 272 92 335 2.88e-15 75.1
Msa1290920 MtrunA17_Chr2g0311711 24.706 340 167 13 17 276 30 360 3.47e-15 75.1
Msa1290920 MtrunA17_Chr5g0424211 25.439 228 117 7 80 256 90 315 4.24e-15 74.3
Msa1290920 MtrunA17_Chr7g0220011 24.062 320 163 11 27 274 14 325 4.56e-15 74.3
Msa1290920 MtrunA17_Chr8g0371921 23.759 282 140 7 37 246 25 303 4.80e-15 74.7
Msa1290920 MtrunA17_Chr3g0093751 26.693 251 131 8 81 283 105 350 5.61e-15 74.3
Msa1290920 MtrunA17_Chr5g0412681 27.976 168 90 3 137 274 153 319 5.66e-15 73.9
Msa1290920 MtrunA17_Chr5g0439011 23.469 294 157 8 53 279 6 298 7.58e-15 73.6
Msa1290920 MtrunA17_Chr4g0064771 27.119 177 93 5 137 281 35 207 9.48e-15 71.6
Msa1290920 MtrunA17_Chr1g0184161 24.383 324 155 13 29 274 15 326 1.85e-14 72.8
Msa1290920 MtrunA17_Chr6g0455481 24.768 323 158 13 27 274 17 329 3.60e-14 71.6
Msa1290920 MtrunA17_Chr7g0220001 25.552 317 162 11 27 274 16 327 4.10e-14 71.6
Msa1290920 MtrunA17_Chr7g0225881 23.684 342 176 12 17 279 27 362 5.38e-14 71.6
Msa1290920 MtrunA17_Chr6g0488511 26.217 267 132 10 52 253 3 269 9.85e-14 70.1
Msa1290920 MtrunA17_Chr7g0235981 26.064 188 103 5 135 287 141 327 1.07e-13 70.5
Msa1290920 MtrunA17_Chr5g0412671 24.183 306 158 9 43 275 29 333 2.23e-13 69.7
Msa1290920 MtrunA17_Chr2g0319491 24.074 270 138 9 45 249 26 293 2.52e-13 69.3
Msa1290920 MtrunA17_Chr1g0184151 22.601 323 168 9 26 274 12 326 2.91e-13 69.3
Msa1290920 MtrunA17_Chr1g0148771 21.886 297 153 8 52 280 63 348 3.05e-13 69.3
Msa1290920 MtrunA17_Chr2g0285931 24.522 314 151 13 41 276 17 322 3.12e-13 68.9
Msa1290920 MtrunA17_Chr7g0247991 23.121 346 187 12 17 287 32 373 4.10e-13 68.9
Msa1290920 MtrunA17_Chr8g0336871 28.485 165 91 3 140 278 2 165 4.86e-13 66.2
Msa1290920 MtrunA17_Chr5g0405411 23.675 283 141 8 36 246 24 303 9.06e-13 67.8
Msa1290920 MtrunA17_Chr3g0114871 32.484 157 80 7 81 215 91 243 1.10e-12 67.0
Msa1290920 MtrunA17_Chr4g0045431 23.488 281 116 7 45 233 19 292 1.32e-12 67.4
Msa1290920 MtrunA17_Chr4g0068891 27.273 176 90 5 138 276 136 310 1.87e-12 66.6
Msa1290920 MtrunA17_Chr8g0375611 49.020 51 26 0 240 290 1 51 5.79e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1290920 AT1G17020.1 40.974 349 134 7 11 287 10 358 1.94e-85 260
Msa1290920 AT4G25300.1 41.954 348 131 7 11 287 9 356 2.06e-85 260
Msa1290920 AT1G17010.1 41.761 352 133 7 11 290 10 361 4.19e-84 257
Msa1290920 AT4G25310.1 42.029 345 132 6 11 287 9 353 1.10e-83 256
Msa1290920 AT1G78550.1 36.752 351 152 6 7 287 6 356 2.07e-73 229
Msa1290920 AT1G78550.2 38.951 267 117 3 65 287 14 278 1.62e-62 199
Msa1290920 AT4G25310.2 38.485 330 137 8 11 287 9 325 2.87e-60 194
Msa1290920 AT3G21420.1 32.194 351 162 7 15 289 14 364 5.04e-58 190
Msa1290920 AT2G38240.1 27.859 341 172 7 17 285 11 349 3.83e-42 148
Msa1290920 AT4G25300.2 44.970 169 63 2 149 287 94 262 7.16e-42 145
Msa1290920 AT3G55970.1 27.378 347 174 9 18 286 14 360 2.48e-39 141
Msa1290920 AT5G05600.1 25.664 339 179 6 18 283 27 365 3.86e-38 138
Msa1290920 AT5G20400.1 29.697 330 156 11 17 271 8 336 4.49e-37 135
Msa1290920 AT1G49390.1 29.375 320 152 10 17 263 8 326 1.75e-36 133
Msa1290920 AT3G11180.1 26.765 340 174 7 18 283 56 394 9.61e-36 132
Msa1290920 AT3G11180.2 27.469 324 160 7 18 267 56 378 9.79e-36 132
Msa1290920 AT1G49390.2 32.456 228 109 5 81 263 20 247 5.39e-35 127
Msa1290920 AT5G54000.2 27.795 331 162 10 17 271 8 337 1.58e-32 123
Msa1290920 AT5G20550.1 28.097 331 162 11 17 272 8 337 4.95e-32 121
Msa1290920 AT5G05600.2 29.461 241 126 5 18 214 27 267 5.45e-32 120
Msa1290920 AT5G54000.1 30.252 238 119 6 81 271 20 257 5.09e-31 117
Msa1290920 AT4G10490.1 26.801 347 179 9 10 286 3 344 2.82e-30 117
Msa1290920 AT3G55970.2 30.453 243 121 7 18 212 14 256 3.18e-30 115
Msa1290920 AT2G44800.1 29.412 340 169 12 17 286 15 353 1.08e-28 112
Msa1290920 AT3G60290.1 30.286 350 159 14 17 289 15 356 2.46e-28 112
Msa1290920 AT4G16330.1 29.249 253 126 7 81 285 9 256 7.49e-28 108
Msa1290920 AT4G16330.2 26.710 307 143 10 51 285 66 362 1.10e-27 110
Msa1290920 AT5G24530.1 27.103 321 161 7 27 277 13 330 1.40e-27 109
Msa1290920 AT2G36690.2 24.784 347 186 8 17 289 20 365 9.11e-25 102
Msa1290920 AT2G36690.1 24.784 347 186 8 17 289 20 365 9.11e-25 102
Msa1290920 AT4G10500.1 23.380 355 193 9 1 286 1 345 5.47e-23 97.4
Msa1290920 AT4G22880.1 25.076 327 162 9 15 259 4 329 7.42e-23 97.1
Msa1290920 AT4G22880.2 25.076 327 162 9 15 259 4 329 7.42e-23 97.1
Msa1290920 AT4G22880.3 25.076 327 162 9 15 259 4 329 7.42e-23 97.1
Msa1290920 AT3G13610.1 27.888 251 137 7 81 287 111 361 1.70e-22 96.3
Msa1290920 AT1G77330.1 28.996 269 114 10 52 248 3 266 2.14e-21 92.0
Msa1290920 AT1G55290.1 29.435 248 129 8 81 283 111 357 2.34e-21 92.8
Msa1290920 AT5G43450.1 24.118 340 177 10 18 282 24 357 1.99e-20 90.5
Msa1290920 AT4G25420.1 25.510 294 142 7 52 269 61 353 5.31e-20 89.4
Msa1290920 AT5G63590.1 31.799 239 102 11 80 261 62 296 4.18e-19 85.9
Msa1290920 AT5G08640.2 25.348 359 169 15 1 283 1 336 4.45e-19 86.3
Msa1290920 AT5G08640.1 25.348 359 169 15 1 283 1 336 4.45e-19 86.3
Msa1290920 AT1G12010.1 25.676 296 147 8 51 279 6 295 5.88e-19 85.5
Msa1290920 AT5G59540.1 23.782 349 180 12 18 287 25 366 6.19e-19 86.3
Msa1290920 AT5G07480.1 26.437 261 138 8 81 289 98 356 1.05e-18 85.5
Msa1290920 AT2G30840.3 31.638 177 94 4 137 287 181 356 3.19e-18 84.0
Msa1290920 AT5G07480.2 25.664 226 128 6 102 289 24 247 5.52e-18 81.6
Msa1290920 AT1G04350.1 24.069 349 178 14 17 287 21 360 8.14e-18 82.8
Msa1290920 AT3G51240.1 22.601 323 175 7 27 277 13 332 1.03e-17 82.4
Msa1290920 AT2G30840.1 30.601 183 94 4 137 287 181 362 2.20e-17 81.6
Msa1290920 AT3G19000.1 25.246 305 135 10 51 268 31 329 4.33e-17 80.9
Msa1290920 AT1G62380.1 23.630 292 158 8 51 279 6 295 5.36e-17 80.1
Msa1290920 AT2G30830.1 24.405 336 174 11 17 278 20 349 6.00e-17 80.5
Msa1290920 AT1G06620.1 23.754 341 171 11 17 278 26 356 6.87e-17 80.1
Msa1290920 AT4G25420.2 28.019 207 101 5 52 211 61 266 8.01e-17 79.3
Msa1290920 AT1G06645.1 23.284 335 182 13 17 278 38 370 1.00e-16 80.1
Msa1290920 AT3G51240.2 24.898 245 134 5 80 277 7 248 1.44e-16 78.2
Msa1290920 AT5G07200.1 23.548 310 156 8 20 251 28 334 1.72e-16 79.3
Msa1290920 AT1G60980.1 24.834 302 144 9 29 250 36 334 3.29e-16 78.6
Msa1290920 AT1G05010.1 22.924 301 160 9 49 279 1 299 1.41e-15 76.3
Msa1290920 AT1G15550.1 21.429 322 166 10 26 269 27 339 1.63e-15 76.3
Msa1290920 AT5G51810.1 24.775 222 115 5 81 251 113 333 2.27e-15 75.9
Msa1290920 AT1G06640.1 23.209 349 186 13 17 287 25 369 3.98e-15 75.1
Msa1290920 AT3G19000.2 26.484 219 99 8 51 213 31 243 9.70e-15 73.2
Msa1290920 AT2G19590.1 24.055 291 153 10 51 279 10 294 1.06e-14 73.6
Msa1290920 AT3G19010.3 23.588 301 158 12 51 288 27 318 1.55e-14 73.2
Msa1290920 AT1G44090.1 33.613 119 49 2 162 251 220 337 2.68e-14 72.8
Msa1290920 AT1G06650.2 25.749 167 90 4 145 278 195 360 3.97e-14 72.4
Msa1290920 AT1G80340.1 20.064 314 170 7 28 268 26 331 4.56e-14 72.0
Msa1290920 AT3G12900.1 23.622 254 142 7 80 286 107 355 2.61e-13 69.7
Msa1290920 AT5G51810.2 27.564 156 90 3 81 214 113 267 3.03e-13 68.9
Msa1290920 AT1G06640.3 27.459 244 128 10 17 215 25 264 1.44e-12 67.0
Msa1290920 AT1G06640.2 27.459 244 128 10 17 215 25 264 1.68e-12 67.0
Msa1290920 AT2G30840.2 44.304 79 43 1 137 215 181 258 1.90e-12 67.0
Msa1290920 AT5G43450.2 26.050 238 127 8 17 211 23 254 2.63e-12 66.2
Msa1290920 AT4G21200.1 24.908 273 125 9 43 244 33 296 3.33e-12 66.2
Msa1290920 AT2G06960.1 31.884 138 68 4 158 275 15 146 8.49e-12 62.4
Msa1290920 AT5G63595.1 34.211 152 87 7 67 214 61 203 2.87e-11 63.2
Msa1290920 AT1G06650.1 40.845 71 41 1 145 215 195 264 4.39e-11 62.8
Msa1290920 AT1G06620.2 25.306 245 126 9 17 214 26 260 7.60e-11 62.0

Find 51 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATCAGACGAACACAAAT+TGG 0.265125 8_3:-46110097 Msa1290920:CDS
GGAATACTTGGAAATAAGTT+TGG 0.266243 8_3:+46110024 None:intergenic
AACATATCGTTCTGGAACTT+TGG 0.360365 8_3:+46110727 None:intergenic
TCTCTTGGTGCCTTCTGTGC+AGG 0.394890 8_3:-46110771 Msa1290920:CDS
CTCCAACTCAATGAAATAGA+AGG 0.399689 8_3:-46109389 Msa1290920:CDS
ATCACAGAAACCAGGAGATA+TGG 0.403808 8_3:-46110142 Msa1290920:CDS
GGCCTTCTATTTCATTGAGT+TGG 0.410796 8_3:+46109387 None:intergenic
CGATCATGCATGCAAAGAAT+GGG 0.419677 8_3:-46110591 Msa1290920:CDS
TTCATTGAGTTGGAGAAGAA+TGG 0.432192 8_3:+46109397 None:intergenic
TGCAGCAATGGATTCAGAAA+TGG 0.442115 8_3:-46110813 None:intergenic
TCGATCATGCATGCAAAGAA+TGG 0.447725 8_3:-46110592 Msa1290920:CDS
CCAGGAGATATGGAAGGTTT+CGG 0.455975 8_3:-46110132 Msa1290920:CDS
TTTGGATTTCTCATGTATGA+TGG 0.468214 8_3:+46110042 None:intergenic
TTGCTAGAGTTATTTGAAGA+GGG 0.468917 8_3:-46109512 Msa1290920:CDS
TATTTCTCACGCAAGCTTGA+AGG 0.469607 8_3:-46108784 Msa1290920:CDS
CCAAGACTTCTTCAATCTGC+CGG 0.479805 8_3:-46110184 Msa1290920:intron
TCAGAAATGGTGAAGAAGCT+TGG 0.483479 8_3:-46110800 Msa1290920:CDS
TAGATACTACAGAAGGGTCT+TGG 0.485325 8_3:+46110696 None:intergenic
CGTTCTGGAACTTTGGAGAT+GGG 0.489316 8_3:+46110734 None:intergenic
GGAGTAATAAGGCTTGCTGC+TGG 0.492651 8_3:+46108859 None:intergenic
TCGTTCTGGAACTTTGGAGA+TGG 0.505928 8_3:+46110733 None:intergenic
AGTGTGGAAGATTTCTTCAA+AGG 0.508864 8_3:-46108808 Msa1290920:CDS
CCGAAACCTTCCATATCTCC+TGG 0.509737 8_3:+46110132 None:intergenic
GAAGCTTGGAACATCTCTCT+TGG 0.517543 8_3:-46110786 Msa1290920:CDS
AACTTCTGCAAATCGATGAC+TGG 0.531193 8_3:+46110650 None:intergenic
AGACGAACACAAATTGGAAT+GGG 0.531311 8_3:-46110091 Msa1290920:CDS
TGAGTTGGAGAAGAATGGTA+AGG 0.545815 8_3:+46109402 None:intergenic
CAGACGAACACAAATTGGAA+TGG 0.548974 8_3:-46110092 Msa1290920:CDS
AAGTTATTGTCTGAAGAAGA+TGG 0.549063 8_3:-46110632 Msa1290920:CDS
ATTGCTAGAGTTATTTGAAG+AGG 0.551019 8_3:-46109513 Msa1290920:CDS
TTTACTAGCTCCTGCACAGA+AGG 0.552907 8_3:+46110761 None:intergenic
CTAATGTCGTTGAACACTGC+AGG 0.559354 8_3:+46108829 None:intergenic
GGACTCAATCCTCATTCTGA+TGG 0.574193 8_3:-46109431 Msa1290920:CDS
CAATCTAGCACTGTGAAATG+TGG 0.587201 8_3:+46108897 None:intergenic
ATTGTGCTAGATACTACAGA+AGG 0.595612 8_3:+46110689 None:intergenic
AGCAACAATTAACTCAGAGA+AGG 0.603268 8_3:-46108935 Msa1290920:CDS
CTAGAGTTATTTGAAGAGGG+AGG 0.611828 8_3:-46109509 Msa1290920:CDS
CAATTAACTCAGAGAAGGAG+AGG 0.612359 8_3:-46108930 Msa1290920:CDS
CGAACACAAATTGGAATGGG+CGG 0.614687 8_3:-46110088 Msa1290920:CDS
GAGTTGGAGAAGAATGGTAA+GGG 0.618943 8_3:+46109403 None:intergenic
AGCACTGTGAAATGTGGCAA+TGG 0.625118 8_3:+46108903 None:intergenic
AGACTTCTTCAATCTGCCGG+TGG 0.639114 8_3:-46110181 Msa1290920:CDS
AGGGCAGTACCATCAGAATG+AGG 0.647525 8_3:+46109422 None:intergenic
CAGAAACCAGGAGATATGGA+AGG 0.650049 8_3:-46110138 Msa1290920:CDS
AAGAGGGAGGTCAAGCAATG+AGG 0.655282 8_3:-46109496 Msa1290920:CDS
GATCATGCATGCAAAGAATG+GGG 0.659038 8_3:-46110590 Msa1290920:intron
TTGTGCTAGATACTACAGAA+GGG 0.666114 8_3:+46110690 None:intergenic
AATTGTACATTGATGACATG+AGG 0.667705 8_3:-46108759 Msa1290920:CDS
AAATCGATGACTGGAACTTG+TGG 0.682620 8_3:+46110659 None:intergenic
AAAATATTATCACAGAAACC+AGG 0.686621 8_3:-46110150 Msa1290920:CDS
AGTGTTCAACGACATTAGTG+TGG 0.716232 8_3:-46108824 Msa1290920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTCAATAATTTTATAATA+AGG + chr8_3:46109124-46109143 None:intergenic 10.0%
!!! TATAAAATTATTGACTTTTT+AGG - chr8_3:46109127-46109146 Msa1290920:intron 10.0%
!! AAATAATACATAAAAATAGA+AGG + chr8_3:46109575-46109594 None:intergenic 10.0%
!!! TTTATATAAAATCAATTTTG+TGG + chr8_3:46109810-46109829 None:intergenic 10.0%
!!! AAGTCAATAATTTTATAATA+AGG + chr8_3:46109124-46109143 None:intergenic 10.0%
!!! TATAAAATTATTGACTTTTT+AGG - chr8_3:46109127-46109146 Msa1290920:intron 10.0%
!! AAATAATACATAAAAATAGA+AGG + chr8_3:46109575-46109594 None:intergenic 10.0%
!!! TTTATATAAAATCAATTTTG+TGG + chr8_3:46109810-46109829 None:intergenic 10.0%
!!! TAAGAAACAATTGATTTTTT+AGG + chr8_3:46109216-46109235 None:intergenic 15.0%
!!! ATCAATTGTTTCTTATAATA+AGG - chr8_3:46109221-46109240 Msa1290920:intron 15.0%
!! AAATATATAAAATGATGAAC+AGG + chr8_3:46109907-46109926 None:intergenic 15.0%
!! TTATAAATTGTCAATCATAA+TGG + chr8_3:46110376-46110395 None:intergenic 15.0%
!! GTAATATAATATAGTTACTA+GGG + chr8_3:46110472-46110491 None:intergenic 15.0%
!! TGTAATATAATATAGTTACT+AGG + chr8_3:46110473-46110492 None:intergenic 15.0%
!!! TAAGAAACAATTGATTTTTT+AGG + chr8_3:46109216-46109235 None:intergenic 15.0%
!!! ATCAATTGTTTCTTATAATA+AGG - chr8_3:46109221-46109240 Msa1290920:intron 15.0%
!! AAATATATAAAATGATGAAC+AGG + chr8_3:46109907-46109926 None:intergenic 15.0%
!! TTATAAATTGTCAATCATAA+TGG + chr8_3:46110376-46110395 None:intergenic 15.0%
!! GTAATATAATATAGTTACTA+GGG + chr8_3:46110472-46110491 None:intergenic 15.0%
!! TGTAATATAATATAGTTACT+AGG + chr8_3:46110473-46110492 None:intergenic 15.0%
!! AAAATAAAAAAAGAAGGAGA+CGG + chr8_3:46109005-46109024 None:intergenic 20.0%
!!! TCTATGATTTATGGTTTTAT+TGG - chr8_3:46109097-46109116 Msa1290920:intron 20.0%
!!! TTGTTTCTTATAATAAGGAT+CGG - chr8_3:46109226-46109245 Msa1290920:intron 20.0%
!!! AACCATGATTTTGAAATTAT+TGG - chr8_3:46109287-46109306 Msa1290920:intron 20.0%
!!! TTAAAATTTTCCACCAATAA+AGG + chr8_3:46109337-46109356 None:intergenic 20.0%
!! AATACATAAAAATAGAAGGA+GGG + chr8_3:46109571-46109590 None:intergenic 20.0%
!! TAATACATAAAAATAGAAGG+AGG + chr8_3:46109572-46109591 None:intergenic 20.0%
!!! AAATTTCATCCAAAATTTTG+AGG + chr8_3:46109683-46109702 None:intergenic 20.0%
!!! CACATTAATTTTTTTGCTTT+AGG - chr8_3:46109859-46109878 Msa1290920:intron 20.0%
!!! TTCCATCTTTTTTTATTTGA+AGG + chr8_3:46110187-46110206 None:intergenic 20.0%
!! AAATAAAAAAAGATGGAATG+TGG - chr8_3:46110189-46110208 Msa1290920:intron 20.0%
!! AAAATAAAAAAAGAAGGAGA+CGG + chr8_3:46109005-46109024 None:intergenic 20.0%
!!! TCTATGATTTATGGTTTTAT+TGG - chr8_3:46109097-46109116 Msa1290920:intron 20.0%
!!! TTGTTTCTTATAATAAGGAT+CGG - chr8_3:46109226-46109245 Msa1290920:intron 20.0%
!!! AACCATGATTTTGAAATTAT+TGG - chr8_3:46109287-46109306 Msa1290920:intron 20.0%
!!! TTAAAATTTTCCACCAATAA+AGG + chr8_3:46109337-46109356 None:intergenic 20.0%
!! AATACATAAAAATAGAAGGA+GGG + chr8_3:46109571-46109590 None:intergenic 20.0%
!! TAATACATAAAAATAGAAGG+AGG + chr8_3:46109572-46109591 None:intergenic 20.0%
!!! AAATTTCATCCAAAATTTTG+AGG + chr8_3:46109683-46109702 None:intergenic 20.0%
!!! CACATTAATTTTTTTGCTTT+AGG - chr8_3:46109859-46109878 Msa1290920:intron 20.0%
!!! TTCCATCTTTTTTTATTTGA+AGG + chr8_3:46110187-46110206 None:intergenic 20.0%
!! AAATAAAAAAAGATGGAATG+TGG - chr8_3:46110189-46110208 Msa1290920:intron 20.0%
! ATGGTTACATCTATGATTTA+TGG - chr8_3:46109088-46109107 Msa1290920:intron 25.0%
! TGCCAATAATTTCAAAATCA+TGG + chr8_3:46109292-46109311 None:intergenic 25.0%
! AAAATATTATCACAGAAACC+AGG - chr8_3:46109400-46109419 Msa1290920:CDS 25.0%
!! ATTTAAGACAATTCATCATC+AGG - chr8_3:46109617-46109636 Msa1290920:intron 25.0%
!!! AAAAGTATTTGAGACCTTTT+TGG + chr8_3:46109751-46109770 None:intergenic 25.0%
!! AAAAAGGTCTCAAATACTTT+TGG - chr8_3:46109750-46109769 Msa1290920:intron 25.0%
!! AATACTTTTGGTCATACTTT+TGG - chr8_3:46109762-46109781 Msa1290920:intron 25.0%
!! TTGGTCATGAATTCAAATTT+TGG - chr8_3:46109781-46109800 Msa1290920:intron 25.0%
!!! ACTCTAGCAATTCATTTTTT+GGG + chr8_3:46110028-46110047 None:intergenic 25.0%
!!! AACTCTAGCAATTCATTTTT+TGG + chr8_3:46110029-46110048 None:intergenic 25.0%
!!! AATGCTTTTGTTATCAACAT+TGG - chr8_3:46110233-46110252 Msa1290920:intron 25.0%
!! GTTTCATTCAAATTTTTCGT+TGG + chr8_3:46110409-46110428 None:intergenic 25.0%
! ATGGTTACATCTATGATTTA+TGG - chr8_3:46109088-46109107 Msa1290920:intron 25.0%
! TGCCAATAATTTCAAAATCA+TGG + chr8_3:46109292-46109311 None:intergenic 25.0%
! AAAATATTATCACAGAAACC+AGG - chr8_3:46109400-46109419 Msa1290920:CDS 25.0%
!! ATTTAAGACAATTCATCATC+AGG - chr8_3:46109617-46109636 Msa1290920:intron 25.0%
!!! AAAAGTATTTGAGACCTTTT+TGG + chr8_3:46109751-46109770 None:intergenic 25.0%
!! AAAAAGGTCTCAAATACTTT+TGG - chr8_3:46109750-46109769 Msa1290920:intron 25.0%
!! AATACTTTTGGTCATACTTT+TGG - chr8_3:46109762-46109781 Msa1290920:intron 25.0%
!! TTGGTCATGAATTCAAATTT+TGG - chr8_3:46109781-46109800 Msa1290920:intron 25.0%
!!! ACTCTAGCAATTCATTTTTT+GGG + chr8_3:46110028-46110047 None:intergenic 25.0%
!!! AACTCTAGCAATTCATTTTT+TGG + chr8_3:46110029-46110048 None:intergenic 25.0%
!!! AATGCTTTTGTTATCAACAT+TGG - chr8_3:46110233-46110252 Msa1290920:intron 25.0%
!! GTTTCATTCAAATTTTTCGT+TGG + chr8_3:46110409-46110428 None:intergenic 25.0%
AAGTTATTGTCTGAAGAAGA+TGG - chr8_3:46108918-46108937 Msa1290920:CDS 30.0%
TTTCTTATAATAAGGATCGG+AGG - chr8_3:46109229-46109248 Msa1290920:intron 30.0%
TTCTTATAATAAGGATCGGA+GGG - chr8_3:46109230-46109249 Msa1290920:intron 30.0%
AAAATCATGGTTTACGTTAC+GGG + chr8_3:46109279-46109298 None:intergenic 30.0%
CAAAATCATGGTTTACGTTA+CGG + chr8_3:46109280-46109299 None:intergenic 30.0%
! AATATTTTCTTCTCTTCCAC+CGG + chr8_3:46109388-46109407 None:intergenic 30.0%
TTTGGATTTCTCATGTATGA+TGG + chr8_3:46109511-46109530 None:intergenic 30.0%
GGAATACTTGGAAATAAGTT+TGG + chr8_3:46109529-46109548 None:intergenic 30.0%
AGCTTAACTGATTACCAAAA+AGG - chr8_3:46109734-46109753 Msa1290920:intron 30.0%
TATAAAATGATGAACAGGAC+CGG + chr8_3:46109902-46109921 None:intergenic 30.0%
ATTGCTAGAGTTATTTGAAG+AGG - chr8_3:46110037-46110056 Msa1290920:CDS 30.0%
TTGCTAGAGTTATTTGAAGA+GGG - chr8_3:46110038-46110057 Msa1290920:CDS 30.0%
GGCCTTCAAATAAAAAAAGA+TGG - chr8_3:46110182-46110201 Msa1290920:CDS 30.0%
!! ATAACAAAAGCATTTGTGAG+AGG + chr8_3:46110227-46110246 None:intergenic 30.0%
! CAAGTGTGTAACTTTAAAAG+TGG - chr8_3:46110319-46110338 Msa1290920:intron 30.0%
! AATTGTACATTGATGACATG+AGG - chr8_3:46110791-46110810 Msa1290920:CDS 30.0%
AAGTTATTGTCTGAAGAAGA+TGG - chr8_3:46108918-46108937 Msa1290920:CDS 30.0%
TTTCTTATAATAAGGATCGG+AGG - chr8_3:46109229-46109248 Msa1290920:intron 30.0%
TTCTTATAATAAGGATCGGA+GGG - chr8_3:46109230-46109249 Msa1290920:intron 30.0%
AAAATCATGGTTTACGTTAC+GGG + chr8_3:46109279-46109298 None:intergenic 30.0%
CAAAATCATGGTTTACGTTA+CGG + chr8_3:46109280-46109299 None:intergenic 30.0%
! AATATTTTCTTCTCTTCCAC+CGG + chr8_3:46109388-46109407 None:intergenic 30.0%
TTTGGATTTCTCATGTATGA+TGG + chr8_3:46109511-46109530 None:intergenic 30.0%
GGAATACTTGGAAATAAGTT+TGG + chr8_3:46109529-46109548 None:intergenic 30.0%
AGCTTAACTGATTACCAAAA+AGG - chr8_3:46109734-46109753 Msa1290920:intron 30.0%
TATAAAATGATGAACAGGAC+CGG + chr8_3:46109902-46109921 None:intergenic 30.0%
ATTGCTAGAGTTATTTGAAG+AGG - chr8_3:46110037-46110056 Msa1290920:CDS 30.0%
TTGCTAGAGTTATTTGAAGA+GGG - chr8_3:46110038-46110057 Msa1290920:CDS 30.0%
GGCCTTCAAATAAAAAAAGA+TGG - chr8_3:46110182-46110201 Msa1290920:CDS 30.0%
!! ATAACAAAAGCATTTGTGAG+AGG + chr8_3:46110227-46110246 None:intergenic 30.0%
! CAAGTGTGTAACTTTAAAAG+TGG - chr8_3:46110319-46110338 Msa1290920:intron 30.0%
! AATTGTACATTGATGACATG+AGG - chr8_3:46110791-46110810 Msa1290920:CDS 30.0%
!! AACATATCGTTCTGGAACTT+TGG + chr8_3:46108826-46108845 None:intergenic 35.0%
! TTTTGCTGAACATATCGTTC+TGG + chr8_3:46108834-46108853 None:intergenic 35.0%
TTGTGCTAGATACTACAGAA+GGG + chr8_3:46108863-46108882 None:intergenic 35.0%
ATTGTGCTAGATACTACAGA+AGG + chr8_3:46108864-46108883 None:intergenic 35.0%
TGTATGAGTCACAATCTCAA+TGG - chr8_3:46109069-46109088 Msa1290920:intron 35.0%
TCTTATAATAAGGATCGGAG+GGG - chr8_3:46109231-46109250 Msa1290920:intron 35.0%
TATTGGCAGTTGATCAATCA+CGG - chr8_3:46109304-46109323 Msa1290920:intron 35.0%
TGTATCAGACGAACACAAAT+TGG - chr8_3:46109453-46109472 Msa1290920:CDS 35.0%
AGACGAACACAAATTGGAAT+GGG - chr8_3:46109459-46109478 Msa1290920:CDS 35.0%
!!! GGCTTTAGACCTCAAAATTT+TGG - chr8_3:46109671-46109690 Msa1290920:intron 35.0%
!!! TCCAATGACTTTTTCTGGTT+GGG + chr8_3:46110102-46110121 None:intergenic 35.0%
!! TTGAGTCCAATGACTTTTTC+TGG + chr8_3:46110107-46110126 None:intergenic 35.0%
!! TTCATTGAGTTGGAGAAGAA+TGG + chr8_3:46110156-46110175 None:intergenic 35.0%
CTCCAACTCAATGAAATAGA+AGG - chr8_3:46110161-46110180 Msa1290920:CDS 35.0%
AGCAACAATTAACTCAGAGA+AGG - chr8_3:46110615-46110634 Msa1290920:CDS 35.0%
!!! CAGGAGTTTTAGGAGTAATA+AGG + chr8_3:46110705-46110724 None:intergenic 35.0%
AGTGTGGAAGATTTCTTCAA+AGG - chr8_3:46110742-46110761 Msa1290920:CDS 35.0%
!! AACATATCGTTCTGGAACTT+TGG + chr8_3:46108826-46108845 None:intergenic 35.0%
! TTTTGCTGAACATATCGTTC+TGG + chr8_3:46108834-46108853 None:intergenic 35.0%
TTGTGCTAGATACTACAGAA+GGG + chr8_3:46108863-46108882 None:intergenic 35.0%
ATTGTGCTAGATACTACAGA+AGG + chr8_3:46108864-46108883 None:intergenic 35.0%
TGTATGAGTCACAATCTCAA+TGG - chr8_3:46109069-46109088 Msa1290920:intron 35.0%
TCTTATAATAAGGATCGGAG+GGG - chr8_3:46109231-46109250 Msa1290920:intron 35.0%
TATTGGCAGTTGATCAATCA+CGG - chr8_3:46109304-46109323 Msa1290920:intron 35.0%
TGTATCAGACGAACACAAAT+TGG - chr8_3:46109453-46109472 Msa1290920:CDS 35.0%
AGACGAACACAAATTGGAAT+GGG - chr8_3:46109459-46109478 Msa1290920:CDS 35.0%
!!! GGCTTTAGACCTCAAAATTT+TGG - chr8_3:46109671-46109690 Msa1290920:intron 35.0%
!!! TCCAATGACTTTTTCTGGTT+GGG + chr8_3:46110102-46110121 None:intergenic 35.0%
!! TTGAGTCCAATGACTTTTTC+TGG + chr8_3:46110107-46110126 None:intergenic 35.0%
!! TTCATTGAGTTGGAGAAGAA+TGG + chr8_3:46110156-46110175 None:intergenic 35.0%
CTCCAACTCAATGAAATAGA+AGG - chr8_3:46110161-46110180 Msa1290920:CDS 35.0%
AGCAACAATTAACTCAGAGA+AGG - chr8_3:46110615-46110634 Msa1290920:CDS 35.0%
!!! CAGGAGTTTTAGGAGTAATA+AGG + chr8_3:46110705-46110724 None:intergenic 35.0%
AGTGTGGAAGATTTCTTCAA+AGG - chr8_3:46110742-46110761 Msa1290920:CDS 35.0%
TCAGAAATGGTGAAGAAGCT+TGG - chr8_3:46108750-46108769 Msa1290920:CDS 40.0%
TAGATACTACAGAAGGGTCT+TGG + chr8_3:46108857-46108876 None:intergenic 40.0%
AAATCGATGACTGGAACTTG+TGG + chr8_3:46108894-46108913 None:intergenic 40.0%
AACTTCTGCAAATCGATGAC+TGG + chr8_3:46108903-46108922 None:intergenic 40.0%
TCGATCATGCATGCAAAGAA+TGG - chr8_3:46108958-46108977 Msa1290920:intron 40.0%
CGATCATGCATGCAAAGAAT+GGG - chr8_3:46108959-46108978 Msa1290920:intron 40.0%
GATCATGCATGCAAAGAATG+GGG - chr8_3:46108960-46108979 Msa1290920:intron 40.0%
ATCACAGAAACCAGGAGATA+TGG - chr8_3:46109408-46109427 Msa1290920:CDS 40.0%
CAGACGAACACAAATTGGAA+TGG - chr8_3:46109458-46109477 Msa1290920:CDS 40.0%
AGACAATTCATCATCAGGAC+CGG - chr8_3:46109622-46109641 Msa1290920:intron 40.0%
CTAGAGTTATTTGAAGAGGG+AGG - chr8_3:46110041-46110060 Msa1290920:CDS 40.0%
!!! CCAATGACTTTTTCTGGTTG+GGG + chr8_3:46110101-46110120 None:intergenic 40.0%
!! GTCCAATGACTTTTTCTGGT+TGG + chr8_3:46110103-46110122 None:intergenic 40.0%
GAGTTGGAGAAGAATGGTAA+GGG + chr8_3:46110150-46110169 None:intergenic 40.0%
! TGAGTTGGAGAAGAATGGTA+AGG + chr8_3:46110151-46110170 None:intergenic 40.0%
GGCCTTCTATTTCATTGAGT+TGG + chr8_3:46110166-46110185 None:intergenic 40.0%
GCATTTGTGAGAGGCTTAAT+AGG + chr8_3:46110218-46110237 None:intergenic 40.0%
GTTCGACAGATATTGACGAA+TGG - chr8_3:46110568-46110587 Msa1290920:intron 40.0%
CAATTAACTCAGAGAAGGAG+AGG - chr8_3:46110620-46110639 Msa1290920:CDS 40.0%
CAATCTAGCACTGTGAAATG+TGG + chr8_3:46110656-46110675 None:intergenic 40.0%
! TTGAACACTGCAGGAGTTTT+AGG + chr8_3:46110715-46110734 None:intergenic 40.0%
AGTGTTCAACGACATTAGTG+TGG - chr8_3:46110726-46110745 Msa1290920:CDS 40.0%
TATTTCTCACGCAAGCTTGA+AGG - chr8_3:46110766-46110785 Msa1290920:CDS 40.0%
TCAGAAATGGTGAAGAAGCT+TGG - chr8_3:46108750-46108769 Msa1290920:CDS 40.0%
TAGATACTACAGAAGGGTCT+TGG + chr8_3:46108857-46108876 None:intergenic 40.0%
AAATCGATGACTGGAACTTG+TGG + chr8_3:46108894-46108913 None:intergenic 40.0%
AACTTCTGCAAATCGATGAC+TGG + chr8_3:46108903-46108922 None:intergenic 40.0%
TCGATCATGCATGCAAAGAA+TGG - chr8_3:46108958-46108977 Msa1290920:intron 40.0%
CGATCATGCATGCAAAGAAT+GGG - chr8_3:46108959-46108978 Msa1290920:intron 40.0%
GATCATGCATGCAAAGAATG+GGG - chr8_3:46108960-46108979 Msa1290920:intron 40.0%
ATCACAGAAACCAGGAGATA+TGG - chr8_3:46109408-46109427 Msa1290920:CDS 40.0%
CAGACGAACACAAATTGGAA+TGG - chr8_3:46109458-46109477 Msa1290920:CDS 40.0%
AGACAATTCATCATCAGGAC+CGG - chr8_3:46109622-46109641 Msa1290920:intron 40.0%
CTAGAGTTATTTGAAGAGGG+AGG - chr8_3:46110041-46110060 Msa1290920:CDS 40.0%
!!! CCAATGACTTTTTCTGGTTG+GGG + chr8_3:46110101-46110120 None:intergenic 40.0%
!! GTCCAATGACTTTTTCTGGT+TGG + chr8_3:46110103-46110122 None:intergenic 40.0%
GAGTTGGAGAAGAATGGTAA+GGG + chr8_3:46110150-46110169 None:intergenic 40.0%
! TGAGTTGGAGAAGAATGGTA+AGG + chr8_3:46110151-46110170 None:intergenic 40.0%
GGCCTTCTATTTCATTGAGT+TGG + chr8_3:46110166-46110185 None:intergenic 40.0%
GCATTTGTGAGAGGCTTAAT+AGG + chr8_3:46110218-46110237 None:intergenic 40.0%
GTTCGACAGATATTGACGAA+TGG - chr8_3:46110568-46110587 Msa1290920:intron 40.0%
CAATTAACTCAGAGAAGGAG+AGG - chr8_3:46110620-46110639 Msa1290920:CDS 40.0%
CAATCTAGCACTGTGAAATG+TGG + chr8_3:46110656-46110675 None:intergenic 40.0%
! TTGAACACTGCAGGAGTTTT+AGG + chr8_3:46110715-46110734 None:intergenic 40.0%
AGTGTTCAACGACATTAGTG+TGG - chr8_3:46110726-46110745 Msa1290920:CDS 40.0%
TATTTCTCACGCAAGCTTGA+AGG - chr8_3:46110766-46110785 Msa1290920:CDS 40.0%
GAAGCTTGGAACATCTCTCT+TGG - chr8_3:46108764-46108783 Msa1290920:CDS 45.0%
TTTACTAGCTCCTGCACAGA+AGG + chr8_3:46108792-46108811 None:intergenic 45.0%
!! CGTTCTGGAACTTTGGAGAT+GGG + chr8_3:46108819-46108838 None:intergenic 45.0%
!! TCGTTCTGGAACTTTGGAGA+TGG + chr8_3:46108820-46108839 None:intergenic 45.0%
CAAAGAATGGGGTTTCTTCC+AGG - chr8_3:46108971-46108990 Msa1290920:intron 45.0%
TCACGGAGTCGATCCTTTAT+TGG - chr8_3:46109321-46109340 Msa1290920:intron 45.0%
CCAAGACTTCTTCAATCTGC+CGG - chr8_3:46109366-46109385 Msa1290920:CDS 45.0%
CAGAAACCAGGAGATATGGA+AGG - chr8_3:46109412-46109431 Msa1290920:CDS 45.0%
CCAGGAGATATGGAAGGTTT+CGG - chr8_3:46109418-46109437 Msa1290920:CDS 45.0%
CGAACACAAATTGGAATGGG+CGG - chr8_3:46109462-46109481 Msa1290920:CDS 45.0%
CTGAATGGTTGGGGAATACT+TGG + chr8_3:46109541-46109560 None:intergenic 45.0%
CAAGTATTCCCCAACCATTC+AGG - chr8_3:46109539-46109558 Msa1290920:CDS 45.0%
GGAAAGAACCTGAATGGTTG+GGG + chr8_3:46109550-46109569 None:intergenic 45.0%
GGGAAAGAACCTGAATGGTT+GGG + chr8_3:46109551-46109570 None:intergenic 45.0%
AGGGAAAGAACCTGAATGGT+TGG + chr8_3:46109552-46109571 None:intergenic 45.0%
AAGGAGGGAAAGAACCTGAA+TGG + chr8_3:46109556-46109575 None:intergenic 45.0%
!! GTTTGGGTTTGTTGACCCTT+AGG + chr8_3:46109648-46109667 None:intergenic 45.0%
AGGGTCAACAAACCCAAACA+AGG - chr8_3:46109649-46109668 Msa1290920:intron 45.0%
GGGTCAACAAACCCAAACAA+GGG - chr8_3:46109650-46109669 Msa1290920:intron 45.0%
! GAGGTCTAAAGCCCTTGTTT+GGG + chr8_3:46109664-46109683 None:intergenic 45.0%
! TGAGGTCTAAAGCCCTTGTT+TGG + chr8_3:46109665-46109684 None:intergenic 45.0%
GGCCTCTTAATCTGTTATGC+CGG - chr8_3:46109880-46109899 Msa1290920:intron 45.0%
GACCGGCATAACAGATTAAG+AGG + chr8_3:46109885-46109904 None:intergenic 45.0%
!!! ACTTTTTCTGGTTGGGGACA+AGG + chr8_3:46110095-46110114 None:intergenic 45.0%
CCCCAACCAGAAAAAGTCAT+TGG - chr8_3:46110098-46110117 Msa1290920:CDS 45.0%
GGACTCAATCCTCATTCTGA+TGG - chr8_3:46110119-46110138 Msa1290920:CDS 45.0%
CAACATTGGAGACATGCTAG+AGG - chr8_3:46110247-46110266 Msa1290920:intron 45.0%
AGCACTGTGAAATGTGGCAA+TGG + chr8_3:46110650-46110669 None:intergenic 45.0%
CTAATGTCGTTGAACACTGC+AGG + chr8_3:46110724-46110743 None:intergenic 45.0%
GAAGCTTGGAACATCTCTCT+TGG - chr8_3:46108764-46108783 Msa1290920:CDS 45.0%
TTTACTAGCTCCTGCACAGA+AGG + chr8_3:46108792-46108811 None:intergenic 45.0%
!! CGTTCTGGAACTTTGGAGAT+GGG + chr8_3:46108819-46108838 None:intergenic 45.0%
!! TCGTTCTGGAACTTTGGAGA+TGG + chr8_3:46108820-46108839 None:intergenic 45.0%
CAAAGAATGGGGTTTCTTCC+AGG - chr8_3:46108971-46108990 Msa1290920:intron 45.0%
TCACGGAGTCGATCCTTTAT+TGG - chr8_3:46109321-46109340 Msa1290920:intron 45.0%
CCAAGACTTCTTCAATCTGC+CGG - chr8_3:46109366-46109385 Msa1290920:CDS 45.0%
CAGAAACCAGGAGATATGGA+AGG - chr8_3:46109412-46109431 Msa1290920:CDS 45.0%
CCAGGAGATATGGAAGGTTT+CGG - chr8_3:46109418-46109437 Msa1290920:CDS 45.0%
CGAACACAAATTGGAATGGG+CGG - chr8_3:46109462-46109481 Msa1290920:CDS 45.0%
CTGAATGGTTGGGGAATACT+TGG + chr8_3:46109541-46109560 None:intergenic 45.0%
CAAGTATTCCCCAACCATTC+AGG - chr8_3:46109539-46109558 Msa1290920:CDS 45.0%
GGAAAGAACCTGAATGGTTG+GGG + chr8_3:46109550-46109569 None:intergenic 45.0%
GGGAAAGAACCTGAATGGTT+GGG + chr8_3:46109551-46109570 None:intergenic 45.0%
AGGGAAAGAACCTGAATGGT+TGG + chr8_3:46109552-46109571 None:intergenic 45.0%
AAGGAGGGAAAGAACCTGAA+TGG + chr8_3:46109556-46109575 None:intergenic 45.0%
!! GTTTGGGTTTGTTGACCCTT+AGG + chr8_3:46109648-46109667 None:intergenic 45.0%
AGGGTCAACAAACCCAAACA+AGG - chr8_3:46109649-46109668 Msa1290920:intron 45.0%
GGGTCAACAAACCCAAACAA+GGG - chr8_3:46109650-46109669 Msa1290920:intron 45.0%
! GAGGTCTAAAGCCCTTGTTT+GGG + chr8_3:46109664-46109683 None:intergenic 45.0%
! TGAGGTCTAAAGCCCTTGTT+TGG + chr8_3:46109665-46109684 None:intergenic 45.0%
GGCCTCTTAATCTGTTATGC+CGG - chr8_3:46109880-46109899 Msa1290920:intron 45.0%
GACCGGCATAACAGATTAAG+AGG + chr8_3:46109885-46109904 None:intergenic 45.0%
!!! ACTTTTTCTGGTTGGGGACA+AGG + chr8_3:46110095-46110114 None:intergenic 45.0%
CCCCAACCAGAAAAAGTCAT+TGG - chr8_3:46110098-46110117 Msa1290920:CDS 45.0%
GGACTCAATCCTCATTCTGA+TGG - chr8_3:46110119-46110138 Msa1290920:CDS 45.0%
CAACATTGGAGACATGCTAG+AGG - chr8_3:46110247-46110266 Msa1290920:intron 45.0%
AGCACTGTGAAATGTGGCAA+TGG + chr8_3:46110650-46110669 None:intergenic 45.0%
CTAATGTCGTTGAACACTGC+AGG + chr8_3:46110724-46110743 None:intergenic 45.0%
!! ATAAAAAAAATAAAAAAAGA+AGG + chr8_3:46109011-46109030 None:intergenic 5.0%
!!! TCTTAAAATAATATTTTTAA+AGG - chr8_3:46109835-46109854 Msa1290920:intron 5.0%
!! ATAAAAAAAATAAAAAAAGA+AGG + chr8_3:46109011-46109030 None:intergenic 5.0%
!!! TCTTAAAATAATATTTTTAA+AGG - chr8_3:46109835-46109854 Msa1290920:intron 5.0%
AAGGAGACGGTGTTCAAACC+TGG + chr8_3:46108992-46109011 None:intergenic 50.0%
AAGGATCGGAGGGGCTAATA+TGG - chr8_3:46109240-46109259 Msa1290920:intron 50.0%
CGGAGTCGATCCTTTATTGG+TGG - chr8_3:46109324-46109343 Msa1290920:intron 50.0%
CCGGCAGATTGAAGAAGTCT+TGG + chr8_3:46109369-46109388 None:intergenic 50.0%
AGACTTCTTCAATCTGCCGG+TGG - chr8_3:46109369-46109388 Msa1290920:CDS 50.0%
CCGAAACCTTCCATATCTCC+TGG + chr8_3:46109421-46109440 None:intergenic 50.0%
AAGAGGGAGGTCAAGCAATG+AGG - chr8_3:46110054-46110073 Msa1290920:CDS 50.0%
!!! TTTTCTGGTTGGGGACAAGG+AGG + chr8_3:46110092-46110111 None:intergenic 50.0%
AGGGCAGTACCATCAGAATG+AGG + chr8_3:46110131-46110150 None:intergenic 50.0%
!! GGAGTAATAAGGCTTGCTGC+TGG + chr8_3:46110694-46110713 None:intergenic 50.0%
AAGGAGACGGTGTTCAAACC+TGG + chr8_3:46108992-46109011 None:intergenic 50.0%
AAGGATCGGAGGGGCTAATA+TGG - chr8_3:46109240-46109259 Msa1290920:intron 50.0%
CGGAGTCGATCCTTTATTGG+TGG - chr8_3:46109324-46109343 Msa1290920:intron 50.0%
CCGGCAGATTGAAGAAGTCT+TGG + chr8_3:46109369-46109388 None:intergenic 50.0%
AGACTTCTTCAATCTGCCGG+TGG - chr8_3:46109369-46109388 Msa1290920:CDS 50.0%
CCGAAACCTTCCATATCTCC+TGG + chr8_3:46109421-46109440 None:intergenic 50.0%
AAGAGGGAGGTCAAGCAATG+AGG - chr8_3:46110054-46110073 Msa1290920:CDS 50.0%
!!! TTTTCTGGTTGGGGACAAGG+AGG + chr8_3:46110092-46110111 None:intergenic 50.0%
AGGGCAGTACCATCAGAATG+AGG + chr8_3:46110131-46110150 None:intergenic 50.0%
!! GGAGTAATAAGGCTTGCTGC+TGG + chr8_3:46110694-46110713 None:intergenic 50.0%
!! TCTCTTGGTGCCTTCTGTGC+AGG - chr8_3:46108779-46108798 Msa1290920:CDS 55.0%
TCATCATCAGGACCGGCCTA+AGG - chr8_3:46109629-46109648 Msa1290920:intron 55.0%
CATCATCAGGACCGGCCTAA+GGG - chr8_3:46109630-46109649 Msa1290920:intron 55.0%
!! GGGTTTGTTGACCCTTAGGC+CGG + chr8_3:46109644-46109663 None:intergenic 55.0%
!! TCTCTTGGTGCCTTCTGTGC+AGG - chr8_3:46108779-46108798 Msa1290920:CDS 55.0%
TCATCATCAGGACCGGCCTA+AGG - chr8_3:46109629-46109648 Msa1290920:intron 55.0%
CATCATCAGGACCGGCCTAA+GGG - chr8_3:46109630-46109649 Msa1290920:intron 55.0%
!! GGGTTTGTTGACCCTTAGGC+CGG + chr8_3:46109644-46109663 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 46108744 46110828 46108744 ID=Msa1290920;Name=Msa1290920
chr8_3 mRNA 46108744 46110828 46108744 ID=Msa1290920-mRNA-1;Parent=Msa1290920;Name=Msa1290920-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0|0|4|0|290
chr8_3 exon 46110591 46110828 46110591 ID=Msa1290920-mRNA-1:exon:12740;Parent=Msa1290920-mRNA-1
chr8_3 exon 46110031 46110201 46110031 ID=Msa1290920-mRNA-1:exon:12739;Parent=Msa1290920-mRNA-1
chr8_3 exon 46109365 46109602 46109365 ID=Msa1290920-mRNA-1:exon:12738;Parent=Msa1290920-mRNA-1
chr8_3 exon 46108744 46108969 46108744 ID=Msa1290920-mRNA-1:exon:12737;Parent=Msa1290920-mRNA-1
chr8_3 CDS 46110591 46110828 46110591 ID=Msa1290920-mRNA-1:cds;Parent=Msa1290920-mRNA-1
chr8_3 CDS 46110031 46110201 46110031 ID=Msa1290920-mRNA-1:cds;Parent=Msa1290920-mRNA-1
chr8_3 CDS 46109365 46109602 46109365 ID=Msa1290920-mRNA-1:cds;Parent=Msa1290920-mRNA-1
chr8_3 CDS 46108744 46108969 46108744 ID=Msa1290920-mRNA-1:cds;Parent=Msa1290920-mRNA-1
Gene Sequence

>Msa1290920

ATGGATTCAGAAATGGTGAAGAAGCTTGGAACATCTCTCTTGGTGCCTTCTGTGCAGGAGCTAGTAAAGCAACCCATCTCCAAAGTTCCAGAACGATATGTTCAGCAAAACCAAGACCCTTCTGTAGTATCTAGCACAATCTCTTTACCACAAGTTCCAGTCATCGATTTGCAGAAGTTATTGTCTGAAGAAGATGGAACTGAACTACAAAAATTCGATCATGCATGCAAAGAATGGGACTTCTTCAATCTGCCGGTGGAAGAGAAGAAAATATTATCACAGAAACCAGGAGATATGGAAGGTTTCGGTCAGATGTTTGTTGTATCAGACGAACACAAATTGGAATGGGCGGATTTATTCTACATTGTCACTCATCCATCATACATGAGAAATCCAAACTTATTTCCAAAACTGAAAAAGCTATGTGTGACGATCGTTGAATTTATGTCAAAAGCATTAAAGATCCCAAAAAATGAATTGCTAGAGTTATTTGAAGAGGGAGGTCAAGCAATGAGGATGAATTACTATCCTCCTTGTCCCCAACCAGAAAAAGTCATTGGACTCAATCCTCATTCTGATGGTACTGCCCTTACCATTCTTCTCCAACTCAATGAAATAGAAGGCCTTCAAATAAAAAAAGATGGAATTATTGAACATCGAGCAACAATTAACTCAGAGAAGGAGAGGATTTCCATTGCCACATTTCACAGTGCTAGATTGAATGCAATTCTTGCTCCAGCAGCAAGCCTTATTACTCCTAAAACTCCTGCAGTGTTCAACGACATTAGTGTGGAAGATTTCTTCAAAGGATATTTCTCACGCAAGCTTGAAGGAAAATTGTACATTGATGACATGAGGATGAAAAATGAGTGA
Protein sequence

>Msa1290920

MDSEMVKKLGTSLLVPSVQELVKQPISKVPERYVQQNQDPSVVSSTISLPQVPVIDLQKLLSEEDGTELQKFDHACKEWDFFNLPVEEKKILSQKPGDMEGFGQMFVVSDEHKLEWADLFYIVTHPSYMRNPNLFPKLKKLCVTIVEFMSKALKIPKNELLELFEEGGQAMRMNYYPPCPQPEKVIGLNPHSDGTALTILLQLNEIEGLQIKKDGIIEHRATINSEKERISIATFHSARLNAILAPAASLITPKTPAVFNDISVEDFFKGYFSRKLEGKLYIDDMRMKNE*