AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1254870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254870 MtrunA17_Chr8g0372491 96.562 320 11 0 2 321 1 320 0.0 642
Msa1254870 MtrunA17_Chr7g0272441 47.368 323 158 4 4 318 1 319 1.09e-108 319
Msa1254870 MtrunA17_Chr7g0272501 47.988 323 156 4 4 318 1 319 2.33e-108 318
Msa1254870 MtrunA17_Chr4g0067581 47.468 316 162 3 7 318 40 355 7.86e-108 318
Msa1254870 MtrunA17_Chr7g0272431 46.440 323 161 5 4 318 1 319 1.53e-107 316
Msa1254870 MtrunA17_Chr7g0272531 48.276 319 161 3 4 318 31 349 1.98e-107 317
Msa1254870 MtrunA17_Chr7g0272171 47.649 319 163 3 4 318 1 319 1.30e-106 313
Msa1254870 MtrunA17_Chr7g0272451 47.188 320 160 5 4 318 1 316 2.24e-106 313
Msa1254870 MtrunA17_Chr7g0272481 46.708 319 166 3 4 318 1 319 4.75e-106 312
Msa1254870 MtrunA17_Chr7g0269471 46.688 317 167 2 4 318 1 317 1.48e-105 311
Msa1254870 MtrunA17_Chr7g0272181 47.335 319 164 3 4 318 1 319 4.49e-105 310
Msa1254870 MtrunA17_Chr4g0000111 44.410 322 172 5 4 318 1 322 1.72e-95 285
Msa1254870 MtrunA17_Chr4g0047701 38.050 318 184 6 4 317 1 309 1.98e-73 229
Msa1254870 MtrunA17_Chr4g0047681 37.736 318 185 6 4 317 1 309 3.75e-71 223
Msa1254870 MtrunA17_Chr2g0324141 35.202 321 196 6 4 320 1 313 9.36e-67 212
Msa1254870 MtrunA17_Chr2g0324161 34.268 321 199 6 4 320 1 313 4.03e-65 207
Msa1254870 MtrunA17_Chr1g0192291 53.797 158 70 1 4 158 1 158 1.44e-59 188
Msa1254870 MtrunA17_Chr7g0272471 52.564 156 73 1 4 158 1 156 1.59e-59 188
Msa1254870 MtrunA17_Chr7g0272461 44.156 77 43 0 206 282 29 105 1.17e-20 86.7
Msa1254870 MtrunA17_Chr3g0086531 46.575 73 39 0 82 154 1 73 1.12e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1254870 AT3G51000.1 63.009 319 113 4 5 319 3 320 4.55e-152 429
Msa1254870 AT4G02340.1 47.812 320 158 5 4 318 1 316 4.76e-107 315
Msa1254870 AT3G05600.1 46.341 328 159 6 4 318 1 324 1.99e-100 299
Msa1254870 AT2G26740.1 47.664 321 159 5 7 318 1 321 3.92e-91 275
Msa1254870 AT4G15960.1 41.745 321 178 4 7 318 54 374 4.10e-88 269
Msa1254870 AT2G26750.1 46.372 317 162 5 7 315 1 317 2.16e-87 265
Msa1254870 AT4G15955.3 41.325 317 148 8 8 311 6 297 8.85e-81 248
Msa1254870 AT3G05600.2 46.559 247 117 5 4 239 1 243 4.08e-74 228
Msa1254870 AT4G15955.2 50.289 173 75 3 8 169 6 178 1.82e-56 181
Msa1254870 AT4G15955.1 50.303 165 71 3 8 161 6 170 2.51e-53 173

Find 88 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAGCATGATAACCATTT+TGG 0.142448 8_2:-53196840 None:intergenic
ATTGGTCTTCTTGATCATTT+TGG 0.150021 8_2:+53196946 Msa1254870:CDS
CGCCAAGAATACCATATTTC+TGG 0.182663 8_2:-53196796 None:intergenic
AGCTCATGTTTGCCAATTTC+AGG 0.222501 8_2:+53198084 Msa1254870:CDS
CATATTGTTGGTGACCTTAT+TGG 0.232766 8_2:+53196928 Msa1254870:CDS
ACGATACACAACAACTTATT+AGG 0.240318 8_2:+53196661 None:intergenic
CTCAACTACTTGGCCCAAAA+TGG 0.297865 8_2:+53196826 Msa1254870:CDS
TTCATGGTTTCCCAGAAATA+TGG 0.300646 8_2:+53196785 Msa1254870:CDS
CCTAATCTAGAGATAGTTTA+CGG 0.303872 8_2:-53198739 None:intergenic
AAGGGTAATCTACCTGAAAT+TGG 0.307281 8_2:-53198096 None:intergenic
TCCCAGAAATATGGTATTCT+TGG 0.309032 8_2:+53196794 Msa1254870:CDS
CCACTAGTTCTACTGCTTCA+TGG 0.344231 8_2:+53196769 Msa1254870:CDS
GATGGCACCTAAGTCTATTT+AGG 0.355832 8_2:+53197960 Msa1254870:CDS
CCGTAAACTATCTCTAGATT+AGG 0.356075 8_2:+53198739 Msa1254870:CDS
GTGTATGAATTGGGGTTGAT+AGG 0.358412 8_2:-53196898 None:intergenic
ACAAACCCCTTCACTCTATC+AGG 0.370013 8_2:-53197983 None:intergenic
TACACTCTTCAACATATTGT+TGG 0.372583 8_2:+53196916 Msa1254870:CDS
CGTAAACTATCTCTAGATTA+GGG 0.379541 8_2:+53198740 Msa1254870:CDS
TCTCCGGCAATAAACTTAGT+TGG 0.388206 8_2:-53198557 None:intergenic
TGATTTCTTGCCAACTCCTT+CGG 0.394280 8_2:+53198309 Msa1254870:CDS
GTTCCAACTAAGTTTATTGC+CGG 0.395155 8_2:+53198554 Msa1254870:CDS
GCAGACAAATTCCAAGAGTC+TGG 0.396715 8_2:+53198373 Msa1254870:CDS
TGTTGAAGAGTGTATGAATT+GGG 0.407460 8_2:-53196907 None:intergenic
AGAGAAAGCTCAACAAGTTT+CGG 0.408255 8_2:+53198697 Msa1254870:CDS
GCACCTGATCTAAGAGGATA+TGG 0.428528 8_2:+53196862 Msa1254870:CDS
TACATGTATATTTATTCCGT+TGG 0.437349 8_2:-53196728 None:intergenic
AAAACCAACATCTTTGTCTC+CGG 0.451884 8_2:-53198573 None:intergenic
GAAACTATAAGAAAAGTATA+CGG 0.452414 8_2:+53198055 Msa1254870:CDS
GTTGGAGATCTTGGAAAGTA+AGG 0.455828 8_2:-53198019 None:intergenic
TAGAGATAGTTTACGGATGA+AGG 0.460572 8_2:-53198732 None:intergenic
CTTGAAGTGGTTATACTAGA+TGG 0.462250 8_2:+53198656 Msa1254870:CDS
CACCGGTGAAACCAGACTCT+TGG 0.472500 8_2:-53198384 None:intergenic
AGTATAACCACTTCAAGGTT+AGG 0.474123 8_2:-53198650 None:intergenic
TTCCAAGAGTCTGGTTTCAC+CGG 0.475025 8_2:+53198382 Msa1254870:CDS
AATGATCAAGAAGACCAATA+AGG 0.475165 8_2:-53196942 None:intergenic
GCCAAGAATACCATATTTCT+GGG 0.482112 8_2:-53196795 None:intergenic
GGGCCAAGTAGTTGAGTTGG+TGG 0.492922 8_2:-53196819 None:intergenic
TCACCATATCCTCTTAGATC+AGG 0.494603 8_2:-53196865 None:intergenic
CTTTCTCTTGATGTATATAG+TGG 0.499966 8_2:-53198682 None:intergenic
CATCTAGTATAACCACTTCA+AGG 0.501344 8_2:-53198655 None:intergenic
TGCGCCACAAGCTAGACAAA+GGG 0.501762 8_2:-53198802 None:intergenic
TTTGGGCCAAGTAGTTGAGT+TGG 0.505675 8_2:-53196822 None:intergenic
CATGTAGCAGAACAAGGAAC+AGG 0.506519 8_2:+53196745 Msa1254870:CDS
ATTGGGGTTGATAGGAGAAT+CGG 0.507484 8_2:-53196890 None:intergenic
TGAATGAAGGCATATGTAGT+AGG 0.512881 8_2:+53197914 Msa1254870:intron
TATCAGGCCTAAATAGACTT+AGG 0.515370 8_2:-53197967 None:intergenic
CCACCCCTTTGTCTAGCTTG+TGG 0.515398 8_2:+53198798 Msa1254870:three_prime_UTR
ATAGTTTACGGATGAAGGAA+AGG 0.519190 8_2:-53198727 None:intergenic
ATGTTGAAGAGTGTATGAAT+TGG 0.524008 8_2:-53196908 None:intergenic
CATATGTAGTAGGATCTGAC+TGG 0.526683 8_2:+53197924 Msa1254870:CDS
GTTATCTTTGATCCTTGCCA+TGG 0.532855 8_2:-53198530 None:intergenic
CAAGGTTAGGAACAAGACTC+TGG 0.533494 8_2:-53198637 None:intergenic
GCGCCACCAACTCAACTACT+TGG 0.535864 8_2:+53196816 Msa1254870:CDS
TATAACAGCTCCTCCTGGCA+TGG 0.539454 8_2:+53198279 Msa1254870:CDS
TCTTGTTCCTAACCTTGAAG+TGG 0.541399 8_2:+53198643 Msa1254870:CDS
AAATCAACAATCTCCATGCC+AGG 0.548033 8_2:-53198292 None:intergenic
TCTGACTGGGGAGCAAACAT+TGG 0.557088 8_2:+53197938 Msa1254870:CDS
TTTAGGCCTGATAGAGTGAA+GGG 0.566974 8_2:+53197977 Msa1254870:CDS
TTACGTGGTTGGCAGGAACC+AGG 0.567116 8_2:+53198178 Msa1254870:intron
ATAAGAAAAGTATACGGAGA+TGG 0.570679 8_2:+53198061 Msa1254870:CDS
ATTGCCGGAGACAAAGATGT+TGG 0.571908 8_2:+53198569 Msa1254870:CDS
ACTGGGGAGCAAACATTGGA+TGG 0.572887 8_2:+53197942 Msa1254870:CDS
GCTGTTGCACCTGATCTAAG+AGG 0.588705 8_2:+53196856 Msa1254870:CDS
ATATGTAGTAGGATCTGACT+GGG 0.595018 8_2:+53197925 Msa1254870:CDS
AAAGCTCTCTCTGCACGACC+TGG 0.595328 8_2:-53198196 None:intergenic
ATCCACGACGGCAAAACCGA+AGG 0.595962 8_2:-53198325 None:intergenic
GACGGCAAAACCGAAGGAGT+TGG 0.599928 8_2:-53198319 None:intergenic
ACTCAATGGTTACAGAAGCT+GGG 0.603841 8_2:+53198496 Msa1254870:intron
CACCAAAGAATCAAAACCAA+CGG 0.604850 8_2:+53196712 Msa1254870:CDS
ATTTAGGCCTGATAGAGTGA+AGG 0.608580 8_2:+53197976 Msa1254870:CDS
GTGCGCCACAAGCTAGACAA+AGG 0.608866 8_2:-53198803 None:intergenic
GATAACCGAGGAAGAACTCA+TGG 0.608940 8_2:+53198345 Msa1254870:CDS
CCATGAAGCAGTAGAACTAG+TGG 0.617178 8_2:-53196769 None:intergenic
CACTTCAGTCATGAAGAACA+TGG 0.621193 8_2:-53196686 None:intergenic
GTTGAAGAGTGTATGAATTG+GGG 0.627329 8_2:-53196906 None:intergenic
AATATACATGTAGCAGAACA+AGG 0.633512 8_2:+53196739 Msa1254870:CDS
GAAAGCTCAACAAGTTTCGG+AGG 0.645089 8_2:+53198700 Msa1254870:CDS
TTAGGCCTGATAGAGTGAAG+GGG 0.646633 8_2:+53197978 Msa1254870:CDS
GAACTTCTAGCACCATGGCA+AGG 0.648382 8_2:+53198518 Msa1254870:CDS
GCGATAGTAATTGAATGCAC+CGG 0.666695 8_2:-53198401 None:intergenic
CCACAAGCTAGACAAAGGGG+TGG 0.688618 8_2:-53198798 None:intergenic
TTTGCCGTCGTGGATAACCG+AGG 0.689324 8_2:+53198333 Msa1254870:CDS
GCTGGGAACTTCTAGCACCA+TGG 0.691193 8_2:+53198513 Msa1254870:CDS
TCTTCCTCGGTTATCCACGA+CGG 0.703931 8_2:-53198337 None:intergenic
ATTCAATTACTATCGCGCAA+TGG 0.705978 8_2:+53198408 Msa1254870:CDS
TCAACAATCTCCATGCCAGG+AGG 0.721559 8_2:-53198289 None:intergenic
GCGCCACAAGCTAGACAAAG+GGG 0.722760 8_2:-53198801 None:intergenic
TATGTAGTAGGATCTGACTG+GGG 0.804727 8_2:+53197926 Msa1254870:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAACTAAAAAAACG+TGG - chr8_2:53197014-53197033 None:intergenic 15.0%
!! TATTTCAATAAATATCTACA+CGG - chr8_2:53197825-53197844 None:intergenic 15.0%
!! ATTATTAAACTAAAAAAACG+TGG - chr8_2:53197014-53197033 None:intergenic 15.0%
!! TATTTCAATAAATATCTACA+CGG - chr8_2:53197825-53197844 None:intergenic 15.0%
!! ATCTTTGAATGTGATTAATT+AGG - chr8_2:53197098-53197117 None:intergenic 20.0%
!!! TTATATCAAGTTGAAAATTG+TGG - chr8_2:53197195-53197214 None:intergenic 20.0%
!!! TACTTATCTATTTTCTTTAG+AGG - chr8_2:53197393-53197412 None:intergenic 20.0%
!! TACAATGGTAAATTGTAATT+TGG - chr8_2:53197509-53197528 None:intergenic 20.0%
!!! AACTTTAGGTTTTTACAAAT+GGG + chr8_2:53197617-53197636 Msa1254870:intron 20.0%
!!! AAGTTTACATATATCGTTTT+AGG + chr8_2:53197766-53197785 Msa1254870:intron 20.0%
!! AAATTAGGAAATTAGGAAAA+AGG - chr8_2:53197877-53197896 None:intergenic 20.0%
!! AGAGAATAAATTAGGAAATT+AGG - chr8_2:53197884-53197903 None:intergenic 20.0%
!!! GAAACTATAAGAAAAGTATA+CGG + chr8_2:53198055-53198074 Msa1254870:CDS 20.0%
!!! TAATTTTCATTGAAATTACG+TGG + chr8_2:53198163-53198182 Msa1254870:intron 20.0%
!! ACAAAAAAACATAGGAAAAA+TGG - chr8_2:53198445-53198464 None:intergenic 20.0%
!! AAAACGAAACAAAAAAACAT+AGG - chr8_2:53198453-53198472 None:intergenic 20.0%
!! ATCTTTGAATGTGATTAATT+AGG - chr8_2:53197098-53197117 None:intergenic 20.0%
!!! TTATATCAAGTTGAAAATTG+TGG - chr8_2:53197195-53197214 None:intergenic 20.0%
!!! TACTTATCTATTTTCTTTAG+AGG - chr8_2:53197393-53197412 None:intergenic 20.0%
!! TACAATGGTAAATTGTAATT+TGG - chr8_2:53197509-53197528 None:intergenic 20.0%
!!! AACTTTAGGTTTTTACAAAT+GGG + chr8_2:53197617-53197636 Msa1254870:intron 20.0%
!!! AAGTTTACATATATCGTTTT+AGG + chr8_2:53197766-53197785 Msa1254870:intron 20.0%
!! AAATTAGGAAATTAGGAAAA+AGG - chr8_2:53197877-53197896 None:intergenic 20.0%
!! AGAGAATAAATTAGGAAATT+AGG - chr8_2:53197884-53197903 None:intergenic 20.0%
!!! GAAACTATAAGAAAAGTATA+CGG + chr8_2:53198055-53198074 Msa1254870:CDS 20.0%
!!! TAATTTTCATTGAAATTACG+TGG + chr8_2:53198163-53198182 Msa1254870:intron 20.0%
!! ACAAAAAAACATAGGAAAAA+TGG - chr8_2:53198445-53198464 None:intergenic 20.0%
!! AAAACGAAACAAAAAAACAT+AGG - chr8_2:53198453-53198472 None:intergenic 20.0%
! TACATGTATATTTATTCCGT+TGG - chr8_2:53196731-53196750 None:intergenic 25.0%
! ATTAAACTAAAAAAACGTGG+AGG - chr8_2:53197011-53197030 None:intergenic 25.0%
!!! TTATCTATTTTCTTTAGAGG+TGG - chr8_2:53197390-53197409 None:intergenic 25.0%
! ATTACAATTTACCATTGTAC+AGG + chr8_2:53197510-53197529 Msa1254870:intron 25.0%
!!! CAACTTTAGGTTTTTACAAA+TGG + chr8_2:53197616-53197635 Msa1254870:intron 25.0%
!!! ACTTTAGGTTTTTACAAATG+GGG + chr8_2:53197618-53197637 Msa1254870:intron 25.0%
! AATCAATAAAGTTGACTAAG+AGG - chr8_2:53197705-53197724 None:intergenic 25.0%
! AAACGATATATGTAAACTTG+AGG - chr8_2:53197765-53197784 None:intergenic 25.0%
!!! ATCGTTTTAGGTCTTAATTT+AGG + chr8_2:53197778-53197797 Msa1254870:intron 25.0%
! GAAATATAATTGTACGCAAT+TGG + chr8_2:53197839-53197858 Msa1254870:intron 25.0%
! TGGGATAAAGAGAATAAATT+AGG - chr8_2:53197892-53197911 None:intergenic 25.0%
! AACTTTATCAAGCCATAAAA+GGG - chr8_2:53198117-53198136 None:intergenic 25.0%
! TAACTTTATCAAGCCATAAA+AGG - chr8_2:53198118-53198137 None:intergenic 25.0%
!!! AAAGATGTTGGTTTTCAAAA+TGG + chr8_2:53198581-53198600 Msa1254870:CDS 25.0%
!!! AAGATGTTGGTTTTCAAAAT+GGG + chr8_2:53198582-53198601 Msa1254870:CDS 25.0%
! TACATGTATATTTATTCCGT+TGG - chr8_2:53196731-53196750 None:intergenic 25.0%
! ATTAAACTAAAAAAACGTGG+AGG - chr8_2:53197011-53197030 None:intergenic 25.0%
!!! TTATCTATTTTCTTTAGAGG+TGG - chr8_2:53197390-53197409 None:intergenic 25.0%
! ATTACAATTTACCATTGTAC+AGG + chr8_2:53197510-53197529 Msa1254870:intron 25.0%
!!! CAACTTTAGGTTTTTACAAA+TGG + chr8_2:53197616-53197635 Msa1254870:intron 25.0%
!!! ACTTTAGGTTTTTACAAATG+GGG + chr8_2:53197618-53197637 Msa1254870:intron 25.0%
! AATCAATAAAGTTGACTAAG+AGG - chr8_2:53197705-53197724 None:intergenic 25.0%
! AAACGATATATGTAAACTTG+AGG - chr8_2:53197765-53197784 None:intergenic 25.0%
!!! ATCGTTTTAGGTCTTAATTT+AGG + chr8_2:53197778-53197797 Msa1254870:intron 25.0%
! GAAATATAATTGTACGCAAT+TGG + chr8_2:53197839-53197858 Msa1254870:intron 25.0%
! TGGGATAAAGAGAATAAATT+AGG - chr8_2:53197892-53197911 None:intergenic 25.0%
! AACTTTATCAAGCCATAAAA+GGG - chr8_2:53198117-53198136 None:intergenic 25.0%
! TAACTTTATCAAGCCATAAA+AGG - chr8_2:53198118-53198137 None:intergenic 25.0%
!!! AAAGATGTTGGTTTTCAAAA+TGG + chr8_2:53198581-53198600 Msa1254870:CDS 25.0%
!!! AAGATGTTGGTTTTCAAAAT+GGG + chr8_2:53198582-53198601 Msa1254870:CDS 25.0%
AATATACATGTAGCAGAACA+AGG + chr8_2:53196739-53196758 Msa1254870:CDS 30.0%
! AACAGCATGATAACCATTTT+GGG - chr8_2:53196842-53196861 None:intergenic 30.0%
! TGTTGAAGAGTGTATGAATT+GGG - chr8_2:53196910-53196929 None:intergenic 30.0%
! ATGTTGAAGAGTGTATGAAT+TGG - chr8_2:53196911-53196930 None:intergenic 30.0%
TACACTCTTCAACATATTGT+TGG + chr8_2:53196916-53196935 Msa1254870:CDS 30.0%
AATGATCAAGAAGACCAATA+AGG - chr8_2:53196945-53196964 None:intergenic 30.0%
!!! ATTGGTCTTCTTGATCATTT+TGG + chr8_2:53196946-53196965 Msa1254870:CDS 30.0%
!! TGATCATTTTGGTGAACAAA+AGG + chr8_2:53196957-53196976 Msa1254870:CDS 30.0%
TTGTGGTCAATTCAACTATA+AGG + chr8_2:53197165-53197184 Msa1254870:intron 30.0%
! GGTAAATCGTTTGTGTTTTT+GGG - chr8_2:53197422-53197441 None:intergenic 30.0%
! TGGTAAATCGTTTGTGTTTT+TGG - chr8_2:53197423-53197442 None:intergenic 30.0%
AAACGATTTACCATAGAGTT+CGG + chr8_2:53197430-53197449 Msa1254870:intron 30.0%
GAGTCATATTCAACAACTTT+AGG + chr8_2:53197603-53197622 Msa1254870:intron 30.0%
! ATTTTGCCTACAACATGAAA+AGG - chr8_2:53197646-53197665 None:intergenic 30.0%
!! GTGTTATTGACTCAAACATA+TGG - chr8_2:53197737-53197756 None:intergenic 30.0%
TATATGTAAACTTGAGGTCT+TGG - chr8_2:53197759-53197778 None:intergenic 30.0%
TTAGGAAAAAGGATAGTTTG+AGG - chr8_2:53197866-53197885 None:intergenic 30.0%
TCTTTATCCCATTTGAATGA+AGG + chr8_2:53197901-53197920 Msa1254870:intron 30.0%
ACATATGCCTTCATTCAAAT+GGG - chr8_2:53197911-53197930 None:intergenic 30.0%
TACATATGCCTTCATTCAAA+TGG - chr8_2:53197912-53197931 None:intergenic 30.0%
!! GTTTCAACAGTTTTATCTGT+TGG - chr8_2:53198040-53198059 None:intergenic 30.0%
! ATAAGAAAAGTATACGGAGA+TGG + chr8_2:53198061-53198080 Msa1254870:CDS 30.0%
TTTCATTGAAATTACGTGGT+TGG + chr8_2:53198167-53198186 Msa1254870:intron 30.0%
!! AGAAGTTTTTGCTGATTACA+TGG + chr8_2:53198248-53198267 Msa1254870:CDS 30.0%
ATAGGAAAAATGGTACTTAC+AGG - chr8_2:53198435-53198454 None:intergenic 30.0%
ATCCATTTATTCACACTCAA+TGG + chr8_2:53198482-53198501 Msa1254870:intron 30.0%
AACCATTGAGTGTGAATAAA+TGG - chr8_2:53198487-53198506 None:intergenic 30.0%
!!! AGATGTTGGTTTTCAAAATG+GGG + chr8_2:53198583-53198602 Msa1254870:CDS 30.0%
CTTTCTCTTGATGTATATAG+TGG - chr8_2:53198685-53198704 None:intergenic 30.0%
CCTAATCTAGAGATAGTTTA+CGG - chr8_2:53198742-53198761 None:intergenic 30.0%
CGTAAACTATCTCTAGATTA+GGG + chr8_2:53198740-53198759 Msa1254870:CDS 30.0%
AATATACATGTAGCAGAACA+AGG + chr8_2:53196739-53196758 Msa1254870:CDS 30.0%
! AACAGCATGATAACCATTTT+GGG - chr8_2:53196842-53196861 None:intergenic 30.0%
! TGTTGAAGAGTGTATGAATT+GGG - chr8_2:53196910-53196929 None:intergenic 30.0%
! ATGTTGAAGAGTGTATGAAT+TGG - chr8_2:53196911-53196930 None:intergenic 30.0%
TACACTCTTCAACATATTGT+TGG + chr8_2:53196916-53196935 Msa1254870:CDS 30.0%
AATGATCAAGAAGACCAATA+AGG - chr8_2:53196945-53196964 None:intergenic 30.0%
!!! ATTGGTCTTCTTGATCATTT+TGG + chr8_2:53196946-53196965 Msa1254870:CDS 30.0%
!! TGATCATTTTGGTGAACAAA+AGG + chr8_2:53196957-53196976 Msa1254870:CDS 30.0%
TTGTGGTCAATTCAACTATA+AGG + chr8_2:53197165-53197184 Msa1254870:intron 30.0%
! GGTAAATCGTTTGTGTTTTT+GGG - chr8_2:53197422-53197441 None:intergenic 30.0%
! TGGTAAATCGTTTGTGTTTT+TGG - chr8_2:53197423-53197442 None:intergenic 30.0%
AAACGATTTACCATAGAGTT+CGG + chr8_2:53197430-53197449 Msa1254870:intron 30.0%
GAGTCATATTCAACAACTTT+AGG + chr8_2:53197603-53197622 Msa1254870:intron 30.0%
! ATTTTGCCTACAACATGAAA+AGG - chr8_2:53197646-53197665 None:intergenic 30.0%
!! GTGTTATTGACTCAAACATA+TGG - chr8_2:53197737-53197756 None:intergenic 30.0%
TATATGTAAACTTGAGGTCT+TGG - chr8_2:53197759-53197778 None:intergenic 30.0%
TTAGGAAAAAGGATAGTTTG+AGG - chr8_2:53197866-53197885 None:intergenic 30.0%
TCTTTATCCCATTTGAATGA+AGG + chr8_2:53197901-53197920 Msa1254870:intron 30.0%
ACATATGCCTTCATTCAAAT+GGG - chr8_2:53197911-53197930 None:intergenic 30.0%
TACATATGCCTTCATTCAAA+TGG - chr8_2:53197912-53197931 None:intergenic 30.0%
!! GTTTCAACAGTTTTATCTGT+TGG - chr8_2:53198040-53198059 None:intergenic 30.0%
! ATAAGAAAAGTATACGGAGA+TGG + chr8_2:53198061-53198080 Msa1254870:CDS 30.0%
TTTCATTGAAATTACGTGGT+TGG + chr8_2:53198167-53198186 Msa1254870:intron 30.0%
!! AGAAGTTTTTGCTGATTACA+TGG + chr8_2:53198248-53198267 Msa1254870:CDS 30.0%
ATAGGAAAAATGGTACTTAC+AGG - chr8_2:53198435-53198454 None:intergenic 30.0%
ATCCATTTATTCACACTCAA+TGG + chr8_2:53198482-53198501 Msa1254870:intron 30.0%
AACCATTGAGTGTGAATAAA+TGG - chr8_2:53198487-53198506 None:intergenic 30.0%
!!! AGATGTTGGTTTTCAAAATG+GGG + chr8_2:53198583-53198602 Msa1254870:CDS 30.0%
CTTTCTCTTGATGTATATAG+TGG - chr8_2:53198685-53198704 None:intergenic 30.0%
CCTAATCTAGAGATAGTTTA+CGG - chr8_2:53198742-53198761 None:intergenic 30.0%
CGTAAACTATCTCTAGATTA+GGG + chr8_2:53198740-53198759 Msa1254870:CDS 30.0%
CACCAAAGAATCAAAACCAA+CGG + chr8_2:53196712-53196731 Msa1254870:CDS 35.0%
!!! TTCCGTTGGTTTTGATTCTT+TGG - chr8_2:53196717-53196736 None:intergenic 35.0%
TTCATGGTTTCCCAGAAATA+TGG + chr8_2:53196785-53196804 Msa1254870:CDS 35.0%
TCCCAGAAATATGGTATTCT+TGG + chr8_2:53196794-53196813 Msa1254870:CDS 35.0%
GCCAAGAATACCATATTTCT+GGG - chr8_2:53196798-53196817 None:intergenic 35.0%
! CAACAGCATGATAACCATTT+TGG - chr8_2:53196843-53196862 None:intergenic 35.0%
! GTTGAAGAGTGTATGAATTG+GGG - chr8_2:53196909-53196928 None:intergenic 35.0%
!! CATATTGTTGGTGACCTTAT+TGG + chr8_2:53196928-53196947 Msa1254870:CDS 35.0%
TCAAGTCACAGTCAAAATTG+TGG + chr8_2:53197148-53197167 Msa1254870:intron 35.0%
CCTTAATCTCATGCAAATTG+TGG - chr8_2:53197244-53197263 None:intergenic 35.0%
CCACAATTTGCATGAGATTA+AGG + chr8_2:53197241-53197260 Msa1254870:intron 35.0%
!!! AATCGTTTGTGTTTTTGGGA+TGG - chr8_2:53197418-53197437 None:intergenic 35.0%
CAACAAACTTACCTGTACAA+TGG - chr8_2:53197524-53197543 None:intergenic 35.0%
TTCACTCATAACTCACAAGT+GGG - chr8_2:53197582-53197601 None:intergenic 35.0%
ATTCACTCATAACTCACAAG+TGG - chr8_2:53197583-53197602 None:intergenic 35.0%
GCATCATGAAAATGTCATGT+TGG - chr8_2:53197675-53197694 None:intergenic 35.0%
TAAAGTTGACTAAGAGGTCT+TGG - chr8_2:53197699-53197718 None:intergenic 35.0%
! TGAATGAAGGCATATGTAGT+AGG + chr8_2:53197914-53197933 Msa1254870:intron 35.0%
ATATGTAGTAGGATCTGACT+GGG + chr8_2:53197925-53197944 Msa1254870:CDS 35.0%
TATCAGGCCTAAATAGACTT+AGG - chr8_2:53197970-53197989 None:intergenic 35.0%
! GTTTTATCTGTTGGAGATCT+TGG - chr8_2:53198031-53198050 None:intergenic 35.0%
AAGGGTAATCTACCTGAAAT+TGG - chr8_2:53198099-53198118 None:intergenic 35.0%
! TCAGGTAGATTACCCTTTTA+TGG + chr8_2:53198102-53198121 Msa1254870:intron 35.0%
AAAAACCATGAGTTCTTCCT+CGG - chr8_2:53198353-53198372 None:intergenic 35.0%
ATTCAATTACTATCGCGCAA+TGG + chr8_2:53198408-53198427 Msa1254870:CDS 35.0%
GTTCCAACTAAGTTTATTGC+CGG + chr8_2:53198554-53198573 Msa1254870:CDS 35.0%
AAAACCAACATCTTTGTCTC+CGG - chr8_2:53198576-53198595 None:intergenic 35.0%
!!! GATGTTGGTTTTCAAAATGG+GGG + chr8_2:53198584-53198603 Msa1254870:CDS 35.0%
! GGTACAAAAGATTTTGTGGA+AGG + chr8_2:53198605-53198624 Msa1254870:CDS 35.0%
AGTATAACCACTTCAAGGTT+AGG - chr8_2:53198653-53198672 None:intergenic 35.0%
CATCTAGTATAACCACTTCA+AGG - chr8_2:53198658-53198677 None:intergenic 35.0%
CTTGAAGTGGTTATACTAGA+TGG + chr8_2:53198656-53198675 Msa1254870:CDS 35.0%
AGAGAAAGCTCAACAAGTTT+CGG + chr8_2:53198697-53198716 Msa1254870:CDS 35.0%
ATAGTTTACGGATGAAGGAA+AGG - chr8_2:53198730-53198749 None:intergenic 35.0%
TAGAGATAGTTTACGGATGA+AGG - chr8_2:53198735-53198754 None:intergenic 35.0%
CCGTAAACTATCTCTAGATT+AGG + chr8_2:53198739-53198758 Msa1254870:CDS 35.0%
CACCAAAGAATCAAAACCAA+CGG + chr8_2:53196712-53196731 Msa1254870:CDS 35.0%
!!! TTCCGTTGGTTTTGATTCTT+TGG - chr8_2:53196717-53196736 None:intergenic 35.0%
TTCATGGTTTCCCAGAAATA+TGG + chr8_2:53196785-53196804 Msa1254870:CDS 35.0%
TCCCAGAAATATGGTATTCT+TGG + chr8_2:53196794-53196813 Msa1254870:CDS 35.0%
GCCAAGAATACCATATTTCT+GGG - chr8_2:53196798-53196817 None:intergenic 35.0%
! CAACAGCATGATAACCATTT+TGG - chr8_2:53196843-53196862 None:intergenic 35.0%
! GTTGAAGAGTGTATGAATTG+GGG - chr8_2:53196909-53196928 None:intergenic 35.0%
!! CATATTGTTGGTGACCTTAT+TGG + chr8_2:53196928-53196947 Msa1254870:CDS 35.0%
TCAAGTCACAGTCAAAATTG+TGG + chr8_2:53197148-53197167 Msa1254870:intron 35.0%
CCTTAATCTCATGCAAATTG+TGG - chr8_2:53197244-53197263 None:intergenic 35.0%
CCACAATTTGCATGAGATTA+AGG + chr8_2:53197241-53197260 Msa1254870:intron 35.0%
!!! AATCGTTTGTGTTTTTGGGA+TGG - chr8_2:53197418-53197437 None:intergenic 35.0%
CAACAAACTTACCTGTACAA+TGG - chr8_2:53197524-53197543 None:intergenic 35.0%
TTCACTCATAACTCACAAGT+GGG - chr8_2:53197582-53197601 None:intergenic 35.0%
ATTCACTCATAACTCACAAG+TGG - chr8_2:53197583-53197602 None:intergenic 35.0%
GCATCATGAAAATGTCATGT+TGG - chr8_2:53197675-53197694 None:intergenic 35.0%
TAAAGTTGACTAAGAGGTCT+TGG - chr8_2:53197699-53197718 None:intergenic 35.0%
! TGAATGAAGGCATATGTAGT+AGG + chr8_2:53197914-53197933 Msa1254870:intron 35.0%
ATATGTAGTAGGATCTGACT+GGG + chr8_2:53197925-53197944 Msa1254870:CDS 35.0%
TATCAGGCCTAAATAGACTT+AGG - chr8_2:53197970-53197989 None:intergenic 35.0%
! GTTTTATCTGTTGGAGATCT+TGG - chr8_2:53198031-53198050 None:intergenic 35.0%
AAGGGTAATCTACCTGAAAT+TGG - chr8_2:53198099-53198118 None:intergenic 35.0%
! TCAGGTAGATTACCCTTTTA+TGG + chr8_2:53198102-53198121 Msa1254870:intron 35.0%
AAAAACCATGAGTTCTTCCT+CGG - chr8_2:53198353-53198372 None:intergenic 35.0%
ATTCAATTACTATCGCGCAA+TGG + chr8_2:53198408-53198427 Msa1254870:CDS 35.0%
GTTCCAACTAAGTTTATTGC+CGG + chr8_2:53198554-53198573 Msa1254870:CDS 35.0%
AAAACCAACATCTTTGTCTC+CGG - chr8_2:53198576-53198595 None:intergenic 35.0%
!!! GATGTTGGTTTTCAAAATGG+GGG + chr8_2:53198584-53198603 Msa1254870:CDS 35.0%
! GGTACAAAAGATTTTGTGGA+AGG + chr8_2:53198605-53198624 Msa1254870:CDS 35.0%
AGTATAACCACTTCAAGGTT+AGG - chr8_2:53198653-53198672 None:intergenic 35.0%
CATCTAGTATAACCACTTCA+AGG - chr8_2:53198658-53198677 None:intergenic 35.0%
CTTGAAGTGGTTATACTAGA+TGG + chr8_2:53198656-53198675 Msa1254870:CDS 35.0%
AGAGAAAGCTCAACAAGTTT+CGG + chr8_2:53198697-53198716 Msa1254870:CDS 35.0%
ATAGTTTACGGATGAAGGAA+AGG - chr8_2:53198730-53198749 None:intergenic 35.0%
TAGAGATAGTTTACGGATGA+AGG - chr8_2:53198735-53198754 None:intergenic 35.0%
CCGTAAACTATCTCTAGATT+AGG + chr8_2:53198739-53198758 Msa1254870:CDS 35.0%
CACTTCAGTCATGAAGAACA+TGG - chr8_2:53196689-53196708 None:intergenic 40.0%
CGCCAAGAATACCATATTTC+TGG - chr8_2:53196799-53196818 None:intergenic 40.0%
TCACCATATCCTCTTAGATC+AGG - chr8_2:53196868-53196887 None:intergenic 40.0%
!! ATTGGGGTTGATAGGAGAAT+CGG - chr8_2:53196893-53196912 None:intergenic 40.0%
! GTGTATGAATTGGGGTTGAT+AGG - chr8_2:53196901-53196920 None:intergenic 40.0%
TTAAGGATATGCCGTAGATG+TGG + chr8_2:53197258-53197277 Msa1254870:intron 40.0%
CCGAATTTACTCCACATCTA+CGG - chr8_2:53197272-53197291 None:intergenic 40.0%
CCGTAGATGTGGAGTAAATT+CGG + chr8_2:53197269-53197288 Msa1254870:intron 40.0%
TTATATCTGAGCGAGTCTCA+AGG + chr8_2:53197336-53197355 Msa1254870:intron 40.0%
TATATCTGAGCGAGTCTCAA+GGG + chr8_2:53197337-53197356 Msa1254870:intron 40.0%
CATATGTAGTAGGATCTGAC+TGG + chr8_2:53197924-53197943 Msa1254870:CDS 40.0%
TATGTAGTAGGATCTGACTG+GGG + chr8_2:53197926-53197945 Msa1254870:CDS 40.0%
GATGGCACCTAAGTCTATTT+AGG + chr8_2:53197960-53197979 Msa1254870:CDS 40.0%
ATTTAGGCCTGATAGAGTGA+AGG + chr8_2:53197976-53197995 Msa1254870:CDS 40.0%
TTTAGGCCTGATAGAGTGAA+GGG + chr8_2:53197977-53197996 Msa1254870:CDS 40.0%
GTTGGAGATCTTGGAAAGTA+AGG - chr8_2:53198022-53198041 None:intergenic 40.0%
AGCTCATGTTTGCCAATTTC+AGG + chr8_2:53198084-53198103 Msa1254870:CDS 40.0%
ATTGAAATTACGTGGTTGGC+AGG + chr8_2:53198171-53198190 Msa1254870:intron 40.0%
! CATTTTATAACAGCTCCTCC+TGG + chr8_2:53198274-53198293 Msa1254870:CDS 40.0%
AAATCAACAATCTCCATGCC+AGG - chr8_2:53198295-53198314 None:intergenic 40.0%
TGATTTCTTGCCAACTCCTT+CGG + chr8_2:53198309-53198328 Msa1254870:CDS 40.0%
GCGATAGTAATTGAATGCAC+CGG - chr8_2:53198404-53198423 None:intergenic 40.0%
ACTCAATGGTTACAGAAGCT+GGG + chr8_2:53198496-53198515 Msa1254870:intron 40.0%
GTTATCTTTGATCCTTGCCA+TGG - chr8_2:53198533-53198552 None:intergenic 40.0%
TCTCCGGCAATAAACTTAGT+TGG - chr8_2:53198560-53198579 None:intergenic 40.0%
!! TGGGGGTACAAAAGATTTTG+TGG + chr8_2:53198601-53198620 Msa1254870:CDS 40.0%
TCTTGTTCCTAACCTTGAAG+TGG + chr8_2:53198643-53198662 Msa1254870:CDS 40.0%
CACTTCAGTCATGAAGAACA+TGG - chr8_2:53196689-53196708 None:intergenic 40.0%
CGCCAAGAATACCATATTTC+TGG - chr8_2:53196799-53196818 None:intergenic 40.0%
TCACCATATCCTCTTAGATC+AGG - chr8_2:53196868-53196887 None:intergenic 40.0%
!! ATTGGGGTTGATAGGAGAAT+CGG - chr8_2:53196893-53196912 None:intergenic 40.0%
! GTGTATGAATTGGGGTTGAT+AGG - chr8_2:53196901-53196920 None:intergenic 40.0%
TTAAGGATATGCCGTAGATG+TGG + chr8_2:53197258-53197277 Msa1254870:intron 40.0%
CCGAATTTACTCCACATCTA+CGG - chr8_2:53197272-53197291 None:intergenic 40.0%
CCGTAGATGTGGAGTAAATT+CGG + chr8_2:53197269-53197288 Msa1254870:intron 40.0%
TTATATCTGAGCGAGTCTCA+AGG + chr8_2:53197336-53197355 Msa1254870:intron 40.0%
TATATCTGAGCGAGTCTCAA+GGG + chr8_2:53197337-53197356 Msa1254870:intron 40.0%
CATATGTAGTAGGATCTGAC+TGG + chr8_2:53197924-53197943 Msa1254870:CDS 40.0%
TATGTAGTAGGATCTGACTG+GGG + chr8_2:53197926-53197945 Msa1254870:CDS 40.0%
GATGGCACCTAAGTCTATTT+AGG + chr8_2:53197960-53197979 Msa1254870:CDS 40.0%
ATTTAGGCCTGATAGAGTGA+AGG + chr8_2:53197976-53197995 Msa1254870:CDS 40.0%
TTTAGGCCTGATAGAGTGAA+GGG + chr8_2:53197977-53197996 Msa1254870:CDS 40.0%
GTTGGAGATCTTGGAAAGTA+AGG - chr8_2:53198022-53198041 None:intergenic 40.0%
AGCTCATGTTTGCCAATTTC+AGG + chr8_2:53198084-53198103 Msa1254870:CDS 40.0%
ATTGAAATTACGTGGTTGGC+AGG + chr8_2:53198171-53198190 Msa1254870:intron 40.0%
! CATTTTATAACAGCTCCTCC+TGG + chr8_2:53198274-53198293 Msa1254870:CDS 40.0%
AAATCAACAATCTCCATGCC+AGG - chr8_2:53198295-53198314 None:intergenic 40.0%
TGATTTCTTGCCAACTCCTT+CGG + chr8_2:53198309-53198328 Msa1254870:CDS 40.0%
GCGATAGTAATTGAATGCAC+CGG - chr8_2:53198404-53198423 None:intergenic 40.0%
ACTCAATGGTTACAGAAGCT+GGG + chr8_2:53198496-53198515 Msa1254870:intron 40.0%
GTTATCTTTGATCCTTGCCA+TGG - chr8_2:53198533-53198552 None:intergenic 40.0%
TCTCCGGCAATAAACTTAGT+TGG - chr8_2:53198560-53198579 None:intergenic 40.0%
!! TGGGGGTACAAAAGATTTTG+TGG + chr8_2:53198601-53198620 Msa1254870:CDS 40.0%
TCTTGTTCCTAACCTTGAAG+TGG + chr8_2:53198643-53198662 Msa1254870:CDS 40.0%
CATGTAGCAGAACAAGGAAC+AGG + chr8_2:53196745-53196764 Msa1254870:CDS 45.0%
CCATGAAGCAGTAGAACTAG+TGG - chr8_2:53196772-53196791 None:intergenic 45.0%
!! CCACTAGTTCTACTGCTTCA+TGG + chr8_2:53196769-53196788 Msa1254870:CDS 45.0%
TTTGGGCCAAGTAGTTGAGT+TGG - chr8_2:53196825-53196844 None:intergenic 45.0%
CTCAACTACTTGGCCCAAAA+TGG + chr8_2:53196826-53196845 Msa1254870:CDS 45.0%
GCACCTGATCTAAGAGGATA+TGG + chr8_2:53196862-53196881 Msa1254870:CDS 45.0%
CCATGATTGACCGAACTCTA+TGG - chr8_2:53197443-53197462 None:intergenic 45.0%
CCATAGAGTTCGGTCAATCA+TGG + chr8_2:53197440-53197459 Msa1254870:intron 45.0%
CTCATAACTCACAAGTGGGT+AGG - chr8_2:53197578-53197597 None:intergenic 45.0%
! GGGGAACCTTTTCATGTTGT+AGG + chr8_2:53197637-53197656 Msa1254870:intron 45.0%
TTAGGCCTGATAGAGTGAAG+GGG + chr8_2:53197978-53197997 Msa1254870:CDS 45.0%
ACAAACCCCTTCACTCTATC+AGG - chr8_2:53197986-53198005 None:intergenic 45.0%
GATAACCGAGGAAGAACTCA+TGG + chr8_2:53198345-53198364 Msa1254870:CDS 45.0%
GCAGACAAATTCCAAGAGTC+TGG + chr8_2:53198373-53198392 Msa1254870:CDS 45.0%
! TTCCAAGAGTCTGGTTTCAC+CGG + chr8_2:53198382-53198401 Msa1254870:CDS 45.0%
CACTCAATGGTTACAGAAGC+TGG + chr8_2:53198495-53198514 Msa1254870:intron 45.0%
ATTGCCGGAGACAAAGATGT+TGG + chr8_2:53198569-53198588 Msa1254870:CDS 45.0%
CAAGGTTAGGAACAAGACTC+TGG - chr8_2:53198640-53198659 None:intergenic 45.0%
GAAAGCTCAACAAGTTTCGG+AGG + chr8_2:53198700-53198719 Msa1254870:CDS 45.0%
CATGTAGCAGAACAAGGAAC+AGG + chr8_2:53196745-53196764 Msa1254870:CDS 45.0%
CCATGAAGCAGTAGAACTAG+TGG - chr8_2:53196772-53196791 None:intergenic 45.0%
!! CCACTAGTTCTACTGCTTCA+TGG + chr8_2:53196769-53196788 Msa1254870:CDS 45.0%
TTTGGGCCAAGTAGTTGAGT+TGG - chr8_2:53196825-53196844 None:intergenic 45.0%
CTCAACTACTTGGCCCAAAA+TGG + chr8_2:53196826-53196845 Msa1254870:CDS 45.0%
GCACCTGATCTAAGAGGATA+TGG + chr8_2:53196862-53196881 Msa1254870:CDS 45.0%
CCATGATTGACCGAACTCTA+TGG - chr8_2:53197443-53197462 None:intergenic 45.0%
CCATAGAGTTCGGTCAATCA+TGG + chr8_2:53197440-53197459 Msa1254870:intron 45.0%
CTCATAACTCACAAGTGGGT+AGG - chr8_2:53197578-53197597 None:intergenic 45.0%
! GGGGAACCTTTTCATGTTGT+AGG + chr8_2:53197637-53197656 Msa1254870:intron 45.0%
TTAGGCCTGATAGAGTGAAG+GGG + chr8_2:53197978-53197997 Msa1254870:CDS 45.0%
ACAAACCCCTTCACTCTATC+AGG - chr8_2:53197986-53198005 None:intergenic 45.0%
GATAACCGAGGAAGAACTCA+TGG + chr8_2:53198345-53198364 Msa1254870:CDS 45.0%
GCAGACAAATTCCAAGAGTC+TGG + chr8_2:53198373-53198392 Msa1254870:CDS 45.0%
! TTCCAAGAGTCTGGTTTCAC+CGG + chr8_2:53198382-53198401 Msa1254870:CDS 45.0%
CACTCAATGGTTACAGAAGC+TGG + chr8_2:53198495-53198514 Msa1254870:intron 45.0%
ATTGCCGGAGACAAAGATGT+TGG + chr8_2:53198569-53198588 Msa1254870:CDS 45.0%
CAAGGTTAGGAACAAGACTC+TGG - chr8_2:53198640-53198659 None:intergenic 45.0%
GAAAGCTCAACAAGTTTCGG+AGG + chr8_2:53198700-53198719 Msa1254870:CDS 45.0%
GCTGTTGCACCTGATCTAAG+AGG + chr8_2:53196856-53196875 Msa1254870:CDS 50.0%
ACGTGGAGGCTCAAGAGAAT+TGG - chr8_2:53196997-53197016 None:intergenic 50.0%
TCTGACTGGGGAGCAAACAT+TGG + chr8_2:53197938-53197957 Msa1254870:CDS 50.0%
ACTGGGGAGCAAACATTGGA+TGG + chr8_2:53197942-53197961 Msa1254870:CDS 50.0%
TATAACAGCTCCTCCTGGCA+TGG + chr8_2:53198279-53198298 Msa1254870:CDS 50.0%
TCAACAATCTCCATGCCAGG+AGG - chr8_2:53198292-53198311 None:intergenic 50.0%
TCTTCCTCGGTTATCCACGA+CGG - chr8_2:53198340-53198359 None:intergenic 50.0%
GAACTTCTAGCACCATGGCA+AGG + chr8_2:53198518-53198537 Msa1254870:CDS 50.0%
TGCGCCACAAGCTAGACAAA+GGG - chr8_2:53198805-53198824 None:intergenic 50.0%
GCTGTTGCACCTGATCTAAG+AGG + chr8_2:53196856-53196875 Msa1254870:CDS 50.0%
ACGTGGAGGCTCAAGAGAAT+TGG - chr8_2:53196997-53197016 None:intergenic 50.0%
TCTGACTGGGGAGCAAACAT+TGG + chr8_2:53197938-53197957 Msa1254870:CDS 50.0%
ACTGGGGAGCAAACATTGGA+TGG + chr8_2:53197942-53197961 Msa1254870:CDS 50.0%
TATAACAGCTCCTCCTGGCA+TGG + chr8_2:53198279-53198298 Msa1254870:CDS 50.0%
TCAACAATCTCCATGCCAGG+AGG - chr8_2:53198292-53198311 None:intergenic 50.0%
TCTTCCTCGGTTATCCACGA+CGG - chr8_2:53198340-53198359 None:intergenic 50.0%
GAACTTCTAGCACCATGGCA+AGG + chr8_2:53198518-53198537 Msa1254870:CDS 50.0%
TGCGCCACAAGCTAGACAAA+GGG - chr8_2:53198805-53198824 None:intergenic 50.0%
GCGCCACCAACTCAACTACT+TGG + chr8_2:53196816-53196835 Msa1254870:CDS 55.0%
!! GGGCCAAGTAGTTGAGTTGG+TGG - chr8_2:53196822-53196841 None:intergenic 55.0%
TTACGTGGTTGGCAGGAACC+AGG + chr8_2:53198178-53198197 Msa1254870:intron 55.0%
AAAGCTCTCTCTGCACGACC+TGG - chr8_2:53198199-53198218 None:intergenic 55.0%
GACGGCAAAACCGAAGGAGT+TGG - chr8_2:53198322-53198341 None:intergenic 55.0%
ATCCACGACGGCAAAACCGA+AGG - chr8_2:53198328-53198347 None:intergenic 55.0%
TTTGCCGTCGTGGATAACCG+AGG + chr8_2:53198333-53198352 Msa1254870:CDS 55.0%
CACCGGTGAAACCAGACTCT+TGG - chr8_2:53198387-53198406 None:intergenic 55.0%
GCTGGGAACTTCTAGCACCA+TGG + chr8_2:53198513-53198532 Msa1254870:CDS 55.0%
CCACAAGCTAGACAAAGGGG+TGG - chr8_2:53198801-53198820 None:intergenic 55.0%
! CCACCCCTTTGTCTAGCTTG+TGG + chr8_2:53198798-53198817 Msa1254870:three_prime_UTR 55.0%
GCGCCACAAGCTAGACAAAG+GGG - chr8_2:53198804-53198823 None:intergenic 55.0%
GTGCGCCACAAGCTAGACAA+AGG - chr8_2:53198806-53198825 None:intergenic 55.0%
GCGCCACCAACTCAACTACT+TGG + chr8_2:53196816-53196835 Msa1254870:CDS 55.0%
!! GGGCCAAGTAGTTGAGTTGG+TGG - chr8_2:53196822-53196841 None:intergenic 55.0%
TTACGTGGTTGGCAGGAACC+AGG + chr8_2:53198178-53198197 Msa1254870:intron 55.0%
AAAGCTCTCTCTGCACGACC+TGG - chr8_2:53198199-53198218 None:intergenic 55.0%
GACGGCAAAACCGAAGGAGT+TGG - chr8_2:53198322-53198341 None:intergenic 55.0%
ATCCACGACGGCAAAACCGA+AGG - chr8_2:53198328-53198347 None:intergenic 55.0%
TTTGCCGTCGTGGATAACCG+AGG + chr8_2:53198333-53198352 Msa1254870:CDS 55.0%
CACCGGTGAAACCAGACTCT+TGG - chr8_2:53198387-53198406 None:intergenic 55.0%
GCTGGGAACTTCTAGCACCA+TGG + chr8_2:53198513-53198532 Msa1254870:CDS 55.0%
CCACAAGCTAGACAAAGGGG+TGG - chr8_2:53198801-53198820 None:intergenic 55.0%
! CCACCCCTTTGTCTAGCTTG+TGG + chr8_2:53198798-53198817 Msa1254870:three_prime_UTR 55.0%
GCGCCACAAGCTAGACAAAG+GGG - chr8_2:53198804-53198823 None:intergenic 55.0%
GTGCGCCACAAGCTAGACAA+AGG - chr8_2:53198806-53198825 None:intergenic 55.0%
AGGCGCTCGAGCATATCGAG+TGG - chr8_2:53197558-53197577 None:intergenic 60.0%
! CTCCTTCGGTTTTGCCGTCG+TGG + chr8_2:53198323-53198342 Msa1254870:CDS 60.0%
AGGCGCTCGAGCATATCGAG+TGG - chr8_2:53197558-53197577 None:intergenic 60.0%
! CTCCTTCGGTTTTGCCGTCG+TGG + chr8_2:53198323-53198342 Msa1254870:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 53196672 53198919 53196672 ID=Msa1254870;Name=Msa1254870
chr8_2 mRNA 53196672 53198919 53196672 ID=Msa1254870-mRNA-1;Parent=Msa1254870;Name=Msa1254870-mRNA-1;_AED=0.11;_eAED=0.11;_QI=16|1|1|1|1|1|4|159|321
chr8_2 exon 53196672 53196978 53196672 ID=Msa1254870-mRNA-1:exon:16419;Parent=Msa1254870-mRNA-1
chr8_2 exon 53197923 53198105 53197923 ID=Msa1254870-mRNA-1:exon:16420;Parent=Msa1254870-mRNA-1
chr8_2 exon 53198193 53198434 53198193 ID=Msa1254870-mRNA-1:exon:16421;Parent=Msa1254870-mRNA-1
chr8_2 exon 53198511 53198919 53198511 ID=Msa1254870-mRNA-1:exon:16422;Parent=Msa1254870-mRNA-1
chr8_2 five_prime_UTR 53196672 53196687 53196672 ID=Msa1254870-mRNA-1:five_prime_utr;Parent=Msa1254870-mRNA-1
chr8_2 CDS 53196688 53196978 53196688 ID=Msa1254870-mRNA-1:cds;Parent=Msa1254870-mRNA-1
chr8_2 CDS 53197923 53198105 53197923 ID=Msa1254870-mRNA-1:cds;Parent=Msa1254870-mRNA-1
chr8_2 CDS 53198193 53198434 53198193 ID=Msa1254870-mRNA-1:cds;Parent=Msa1254870-mRNA-1
chr8_2 CDS 53198511 53198760 53198511 ID=Msa1254870-mRNA-1:cds;Parent=Msa1254870-mRNA-1
chr8_2 three_prime_UTR 53198761 53198919 53198761 ID=Msa1254870-mRNA-1:three_prime_utr;Parent=Msa1254870-mRNA-1
Gene Sequence

>Msa1254870

ATGTTCTTCATGACTGAAGTGAATCACCAAAGAATCAAAACCAACGGAATAAATATACATGTAGCAGAACAAGGAACAGGACCACTAGTTCTACTGCTTCATGGTTTCCCAGAAATATGGTATTCTTGGCGCCACCAACTCAACTACTTGGCCCAAAATGGTTATCATGCTGTTGCACCTGATCTAAGAGGATATGGTGACTCCGATTCTCCTATCAACCCCAATTCATACACTCTTCAACATATTGTTGGTGACCTTATTGGTCTTCTTGATCATTTTGGTGAACAAAAGGCATATGTAGTAGGATCTGACTGGGGAGCAAACATTGGATGGCACCTAAGTCTATTTAGGCCTGATAGAGTGAAGGGGTTTGTTGCTCTATGTGTTCCTTACTTTCCAAGATCTCCAACAGATAAAACTGTTGAAACTATAAGAAAAGTATACGGAGATGGAGCTCATGTTTGCCAATTTCAGGAACCAGGTCGTGCAGAGAGAGCTTTTGCTAGATATGATTGTTTGACAGTGATGAAGAAGTTTTTGCTGATTACATGGACACATTTTATAACAGCTCCTCCTGGCATGGAGATTGTTGATTTCTTGCCAACTCCTTCGGTTTTGCCGTCGTGGATAACCGAGGAAGAACTCATGGTTTTTGCAGACAAATTCCAAGAGTCTGGTTTCACCGGTGCATTCAATTACTATCGCGCAATGGACCTAAGCTGGGAACTTCTAGCACCATGGCAAGGATCAAAGATAACAGTTCCAACTAAGTTTATTGCCGGAGACAAAGATGTTGGTTTTCAAAATGGGGGTACAAAAGATTTTGTGGAAGGTGATATTTTCCAGAGTCTTGTTCCTAACCTTGAAGTGGTTATACTAGATGGTCACCACTATATACATCAAGAGAAAGCTCAACAAGTTTCGGAGGAAATCCTTTCCTTCATCCGTAAACTATCTCTAGATTAG

Protein sequence

>Msa1254870

MFFMTEVNHQRIKTNGINIHVAEQGTGPLVLLLHGFPEIWYSWRHQLNYLAQNGYHAVAPDLRGYGDSDSPINPNSYTLQHIVGDLIGLLDHFGEQKAYVVGSDWGANIGWHLSLFRPDRVKGFVALCVPYFPRSPTDKTVETIRKVYGDGAHVCQFQEPGRAERAFARYDCLTVMKKFLLITWTHFITAPPGMEIVDFLPTPSVLPSWITEEELMVFADKFQESGFTGAFNYYRAMDLSWELLAPWQGSKITVPTKFIAGDKDVGFQNGGTKDFVEGDIFQSLVPNLEVVILDGHHYIHQEKAQQVSEEILSFIRKLSLD*