AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1110900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110900 MtrunA17_Chr7g0245631 99.301 286 2 0 1 286 41 326 0.0 582
Msa1110900 MtrunA17_Chr7g0245741 68.531 286 90 0 1 286 41 326 1.93e-148 419
Msa1110900 MtrunA17_Chr7g0245691 65.625 288 96 1 2 286 43 330 7.87e-143 404
Msa1110900 MtrunA17_Chr7g0245711 66.084 286 97 0 1 286 3 288 1.98e-142 402
Msa1110900 MtrunA17_Chr7g0245731 66.084 286 97 0 1 286 91 376 1.39e-140 400
Msa1110900 MtrunA17_Chr7g0245671 65.278 288 97 1 2 286 42 329 1.99e-140 398
Msa1110900 MtrunA17_Chr7g0245641 65.157 287 98 1 2 286 80 366 5.26e-140 399
Msa1110900 MtrunA17_Chr4g0010991 48.958 288 145 2 1 286 42 329 1.80e-90 271
Msa1110900 MtrunA17_Chr1g0155411 42.215 289 155 3 4 286 43 325 3.52e-78 240
Msa1110900 MtrunA17_Chr1g0155431 42.466 292 156 3 1 286 40 325 1.96e-77 238
Msa1110900 MtrunA17_Chr4g0048961 36.101 277 165 3 18 284 62 336 3.56e-59 192
Msa1110900 MtrunA17_Chr4g0042101 32.660 297 177 5 9 286 61 353 1.66e-53 177
Msa1110900 MtrunA17_Chr2g0331211 37.113 291 168 7 2 286 38 319 3.96e-50 168
Msa1110900 MtrunA17_Chr8g0364051 34.138 290 173 6 4 286 43 321 3.43e-43 150
Msa1110900 MtrunA17_Chr8g0363831 34.629 283 171 6 6 283 46 319 4.58e-42 147
Msa1110900 MtrunA17_Chr5g0423551 32.394 284 184 5 6 286 41 319 1.98e-41 145
Msa1110900 MtrunA17_Chr4g0039321 36.752 234 141 3 6 236 46 275 4.61e-41 144
Msa1110900 MtrunA17_Chr2g0281991 32.558 301 178 8 6 286 45 340 1.21e-39 141
Msa1110900 MtrunA17_Chr3g0077231 35.169 236 146 3 4 236 41 272 1.82e-39 140
Msa1110900 MtrunA17_Chr3g0077221 35.593 236 145 4 4 236 45 276 6.58e-38 136
Msa1110900 MtrunA17_Chr5g0431311 33.449 287 182 6 3 286 39 319 8.28e-37 133
Msa1110900 MtrunA17_Chr3g0106111 31.142 289 190 6 1 286 37 319 1.40e-36 132
Msa1110900 MtrunA17_Chr4g0039311 34.188 234 147 3 6 236 48 277 6.70e-36 131
Msa1110900 MtrunA17_Chr2g0282001 29.333 300 185 6 6 284 44 337 2.27e-34 127
Msa1110900 MtrunA17_Chr7g0275521 31.333 300 184 9 6 286 44 340 1.39e-32 122
Msa1110900 MtrunA17_Chr2g0282011 31.104 299 181 8 6 284 45 338 5.64e-31 118
Msa1110900 MtrunA17_Chr4g0002661 31.206 282 180 10 9 286 52 323 1.11e-30 117
Msa1110900 MtrunA17_Chr2g0291541 31.944 288 183 9 5 286 46 326 3.40e-30 115
Msa1110900 MtrunA17_Chr2g0333781 32.624 282 175 11 9 286 59 329 1.09e-29 114
Msa1110900 MtrunA17_Chr4g0001321 30.249 281 183 9 9 286 56 326 2.40e-28 111
Msa1110900 MtrunA17_Chr4g0002961 31.119 286 175 9 9 286 52 323 9.23e-26 103
Msa1110900 MtrunA17_Chr5g0411071 26.818 220 142 5 16 230 55 260 5.63e-16 76.6
Msa1110900 MtrunA17_Chr6g0450211 25.514 243 155 6 6 228 79 315 2.78e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1110900 AT2G45400.3 47.931 290 144 4 3 286 19 307 8.61e-89 267
Msa1110900 AT2G45400.1 47.931 290 144 4 3 286 76 364 7.30e-88 266
Msa1110900 AT5G42800.1 42.907 289 153 4 4 286 43 325 2.45e-76 238
Msa1110900 AT2G45400.2 48.361 244 120 3 3 240 76 319 7.46e-74 229
Msa1110900 AT1G61720.1 36.913 298 171 7 1 286 45 337 3.20e-62 200
Msa1110900 AT4G35420.1 40.278 288 160 7 3 286 42 321 5.68e-58 189
Msa1110900 AT2G45400.4 50.279 179 84 2 3 176 76 254 1.27e-53 175
Msa1110900 AT2G02400.1 34.266 286 177 7 5 286 40 318 2.58e-43 150
Msa1110900 AT4G27250.2 30.403 273 177 4 16 277 57 327 4.05e-41 145
Msa1110900 AT1G09510.1 35.915 284 173 5 3 283 42 319 2.25e-40 143
Msa1110900 AT1G09480.2 35.192 287 177 6 3 286 42 322 3.30e-40 142
Msa1110900 AT1G09480.1 35.192 287 177 6 3 286 89 369 8.48e-40 142
Msa1110900 AT4G27250.1 29.537 281 179 4 16 277 57 337 1.09e-39 142
Msa1110900 AT1G66800.1 33.569 283 181 6 4 286 43 318 1.43e-39 140
Msa1110900 AT1G51410.1 32.639 288 181 6 4 286 44 323 1.76e-39 140
Msa1110900 AT5G19440.1 33.449 287 178 5 4 285 45 323 2.20e-39 140
Msa1110900 AT1G25460.1 32.281 285 184 5 6 286 40 319 1.07e-38 138
Msa1110900 AT5G58490.1 33.448 290 182 7 1 286 41 323 2.19e-38 137
Msa1110900 AT1G09490.2 33.910 289 182 6 1 286 9 291 2.20e-38 137
Msa1110900 AT1G68540.1 31.818 286 185 6 6 286 41 321 9.54e-38 136
Msa1110900 AT1G09490.1 33.798 287 181 6 3 286 42 322 2.34e-37 135
Msa1110900 AT1G09500.2 34.583 240 149 5 1 236 6 241 1.17e-32 122
Msa1110900 AT1G09500.3 34.034 238 149 4 3 236 42 275 4.64e-32 120
Msa1110900 AT1G09500.1 34.034 238 149 4 3 236 42 275 1.06e-31 120
Msa1110900 AT1G15950.3 32.270 282 180 7 7 286 50 322 1.49e-30 117
Msa1110900 AT1G15950.1 32.270 282 180 7 7 286 50 322 1.49e-30 117
Msa1110900 AT2G33590.1 33.571 280 165 10 7 278 46 312 7.18e-30 115
Msa1110900 AT1G76470.1 31.365 271 181 4 9 277 46 313 2.31e-29 114
Msa1110900 AT1G80820.1 32.056 287 174 11 7 286 45 317 4.03e-29 113
Msa1110900 AT1G15950.2 32.222 270 173 6 7 274 50 311 1.08e-28 112
Msa1110900 AT2G33600.1 38.559 236 129 7 7 234 46 273 6.82e-28 110
Msa1110900 AT1G68540.2 31.507 219 141 5 72 286 1 214 9.73e-26 101
Msa1110900 AT1G15950.6 33.761 234 145 6 7 238 50 275 2.95e-25 102
Msa1110900 AT1G15950.4 33.761 234 145 6 7 238 50 275 3.81e-25 102
Msa1110900 AT1G15950.5 33.761 234 145 6 7 238 50 275 4.21e-25 101
Msa1110900 AT1G80820.2 33.054 239 140 9 7 238 45 270 3.67e-24 99.0
Msa1110900 AT1G15950.7 30.357 224 149 5 65 286 6 224 4.24e-17 79.3
Msa1110900 AT5G14700.1 28.571 224 135 7 26 236 115 326 7.10e-16 77.4
Msa1110900 AT2G23910.1 26.592 267 170 9 9 263 50 302 3.63e-15 74.7
Msa1110900 AT2G23910.4 26.592 267 170 9 9 263 16 268 3.64e-15 74.3

Find 54 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTTGATATTCTGGATATT+TGG 0.178162 7_3:-56334498 None:intergenic
GAGAAAGCTGTTCTTGAATT+TGG 0.206019 7_3:+56333826 Msa1110900:CDS
ACTGTTAGTATTTGATATTC+TGG 0.207664 7_3:-56334506 None:intergenic
CTTGAATTTGGTGAACAAAA+TGG 0.220583 7_3:+56333838 Msa1110900:CDS
ACAAAACGACCAACAATAAA+AGG 0.257121 7_3:-56333886 None:intergenic
CATTAGCCATCATTGATCTT+AGG 0.303254 7_3:-56334739 None:intergenic
GATGAGTTGAAGGAAATTAA+AGG 0.307837 7_3:+56334530 Msa1110900:CDS
ATTGCTGCAGCGAAACTGTC+TGG 0.310254 7_3:-56333517 None:intergenic
GGTTCTGCTGTTTCATTCAA+TGG 0.327787 7_3:+56333700 Msa1110900:CDS
AGTTTCTTCGTGTTTAAATC+TGG 0.331608 7_3:-56334563 None:intergenic
CTTAGAAGTGTTAAACCATT+TGG 0.332594 7_3:+56333772 Msa1110900:CDS
AGAACCGTCGATGGCGCATT+AGG 0.342006 7_3:+56333619 Msa1110900:CDS
TTATGCTGTTTCTAAGACTT+TGG 0.354833 7_3:+56333801 Msa1110900:CDS
TATTGAGAAAGCCCTTGTTT+TGG 0.381480 7_3:+56333930 Msa1110900:CDS
TTGAATTTGGTGAACAAAAT+GGG 0.381597 7_3:+56333839 Msa1110900:CDS
CTACTTGAGAATTCTGTTCC+AGG 0.387686 7_3:+56334413 Msa1110900:CDS
TGACATTAACAGAACGTAAG+AGG 0.420276 7_3:+56333422 None:intergenic
TCACTCACGGCGAAGTCAAT+TGG 0.434477 7_3:-56333574 None:intergenic
AGTTGAGACATCTCTTCAAT+AGG 0.440279 7_3:-56334467 None:intergenic
TCAATAGAATCAGGAAGCTT+AGG 0.441975 7_3:-56333913 None:intergenic
AGGGCTTTCTCAATAGAATC+AGG 0.454202 7_3:-56333922 None:intergenic
ACTAACAGTAGATGAGTTGA+AGG 0.472358 7_3:+56334520 Msa1110900:CDS
ATGTGTTGGATGAGAGTGAT+TGG 0.477053 7_3:+56333734 Msa1110900:CDS
ACAGCATAATTCCAACCAAA+TGG 0.484910 7_3:-56333787 None:intergenic
ACTGTCTGGGTTGCTTAGAT+CGG 0.487171 7_3:-56333503 None:intergenic
GAAGTGTTAAACCATTTGGT+TGG 0.489175 7_3:+56333776 Msa1110900:CDS
ATGCACCGGGTAGATTTGTC+AGG 0.495956 7_3:-56333456 None:intergenic
AATGTTCCTAAGATCAATGA+TGG 0.513536 7_3:+56334733 Msa1110900:three_prime_UTR
TCTTCAATAGGTACAATGAA+TGG 0.521628 7_3:-56334455 None:intergenic
GAGCAATTGTATCTACCTCC+TGG 0.524842 7_3:-56334431 None:intergenic
ATTCAATGTTGCAAGGAGAA+AGG 0.530160 7_3:+56334641 Msa1110900:CDS
ACGAAGAAACTCGTGGATGC+TGG 0.539479 7_3:+56334575 Msa1110900:CDS
TATTTCTTCTGGTTCACTCA+CGG 0.542470 7_3:-56333587 None:intergenic
CAGCAATCGAAGGATGTGTC+GGG 0.548077 7_3:+56333533 Msa1110900:CDS
TTGCTGCAGCGAAACTGTCT+GGG 0.550668 7_3:-56333516 None:intergenic
TGGAAAAGACAATGATGTGT+TGG 0.554067 7_3:+56333720 Msa1110900:CDS
TGAAGGAAATTAAAGGTGCA+AGG 0.554380 7_3:+56334537 Msa1110900:CDS
AATGCCTAATGCGCCATCGA+CGG 0.565238 7_3:-56333623 None:intergenic
GACATTAACAGAACGTAAGA+GGG 0.566904 7_3:+56333423 None:intergenic
GCAGCAATCGAAGGATGTGT+CGG 0.592472 7_3:+56333532 Msa1110900:CDS
AGGTTTATATACACTTCAAG+TGG 0.594598 7_3:+56333679 Msa1110900:CDS
TCATACCTAATACCAAAACA+AGG 0.596808 7_3:-56333942 None:intergenic
GGCGAAGTCAATTGGTGAAG+CGG 0.597111 7_3:-56333566 None:intergenic
TGGTGTGACACGTTTCCACA+TGG 0.600639 7_3:+56334355 Msa1110900:CDS
TGAATTCAAAGACAGTGAAG+AGG 0.602314 7_3:+56333659 Msa1110900:CDS
CGATGCAATTCAATGTTGCA+AGG 0.602642 7_3:+56334634 Msa1110900:CDS
AGTTTCGCTGCAGCAATCGA+AGG 0.608639 7_3:+56333523 Msa1110900:CDS
AGTCAATTGGTGAAGCGGTG+TGG 0.629454 7_3:-56333561 None:intergenic
AGCTTCCTGACAAATCTACC+CGG 0.636776 7_3:+56333451 Msa1110900:CDS
CATGGTACATGTTGATGATG+TGG 0.642320 7_3:+56334373 Msa1110900:CDS
TTTAAACACGAAGAAACTCG+TGG 0.659776 7_3:+56334568 Msa1110900:CDS
CATACCTAATACCAAAACAA+GGG 0.680642 7_3:-56333941 None:intergenic
CTTGAGAATTCTGTTCCAGG+AGG 0.684561 7_3:+56334416 Msa1110900:CDS
CATCATCAACATGTACCATG+TGG 0.710484 7_3:-56334370 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAACTTTTGTATATTAAA+GGG - chr7_3:56334844-56334863 None:intergenic 10.0%
!!! TTAAACTTTTGTATATTAAA+GGG - chr7_3:56334844-56334863 None:intergenic 10.0%
!!! CTTAAACTTTTGTATATTAA+AGG - chr7_3:56334845-56334864 None:intergenic 15.0%
!!! CTTAAACTTTTGTATATTAA+AGG - chr7_3:56334845-56334864 None:intergenic 15.0%
!! TATTTGATATTCTGGATATT+TGG - chr7_3:56334501-56334520 None:intergenic 20.0%
!!! AAAGTTTAAGTTATTACTTG+TGG + chr7_3:56334855-56334874 Msa1110900:three_prime_UTR 20.0%
!! TATTTGATATTCTGGATATT+TGG - chr7_3:56334501-56334520 None:intergenic 20.0%
!! TTGAATTTGGTGAACAAAAT+GGG + chr7_3:56333839-56333858 Msa1110900:CDS 25.0%
!! TTGATTCTTCCTTTTATTGT+TGG + chr7_3:56333877-56333896 Msa1110900:CDS 25.0%
! AAAGAAACATGAGTAGAATA+AGG - chr7_3:56333976-56333995 None:intergenic 25.0%
! ATATTATGATCTATGAAGCA+CGG + chr7_3:56334015-56334034 Msa1110900:intron 25.0%
! TCTCAAATTATTAACAGTGT+CGG - chr7_3:56334076-56334095 None:intergenic 25.0%
!! GTCAATTTAAAACCTAAACT+CGG + chr7_3:56334274-56334293 Msa1110900:intron 25.0%
! ACTGTTAGTATTTGATATTC+TGG - chr7_3:56334509-56334528 None:intergenic 25.0%
!! TTGAATTTGGTGAACAAAAT+GGG + chr7_3:56333839-56333858 Msa1110900:CDS 25.0%
!! TTGATTCTTCCTTTTATTGT+TGG + chr7_3:56333877-56333896 Msa1110900:CDS 25.0%
! AAAGAAACATGAGTAGAATA+AGG - chr7_3:56333976-56333995 None:intergenic 25.0%
! ATATTATGATCTATGAAGCA+CGG + chr7_3:56334015-56334034 Msa1110900:intron 25.0%
! TCTCAAATTATTAACAGTGT+CGG - chr7_3:56334076-56334095 None:intergenic 25.0%
!! GTCAATTTAAAACCTAAACT+CGG + chr7_3:56334274-56334293 Msa1110900:intron 25.0%
! ACTGTTAGTATTTGATATTC+TGG - chr7_3:56334509-56334528 None:intergenic 25.0%
! GTTGAAGAAATGTAGCTTTT+CGG - chr7_3:56333482-56333501 None:intergenic 30.0%
!! CTTTTTGTCACTATTTCTTC+TGG - chr7_3:56333601-56333620 None:intergenic 30.0%
AGGTTTATATACACTTCAAG+TGG + chr7_3:56333679-56333698 Msa1110900:CDS 30.0%
!! CTTAGAAGTGTTAAACCATT+TGG + chr7_3:56333772-56333791 Msa1110900:CDS 30.0%
!! TTATGCTGTTTCTAAGACTT+TGG + chr7_3:56333801-56333820 Msa1110900:CDS 30.0%
! CTTGAATTTGGTGAACAAAA+TGG + chr7_3:56333838-56333857 Msa1110900:CDS 30.0%
ACAAAACGACCAACAATAAA+AGG - chr7_3:56333889-56333908 None:intergenic 30.0%
CATACCTAATACCAAAACAA+GGG - chr7_3:56333944-56333963 None:intergenic 30.0%
TCATACCTAATACCAAAACA+AGG - chr7_3:56333945-56333964 None:intergenic 30.0%
! ATGAGATCGTTGATAAAGAT+TGG + chr7_3:56334226-56334245 Msa1110900:intron 30.0%
TCTTCAATAGGTACAATGAA+TGG - chr7_3:56334458-56334477 None:intergenic 30.0%
! GATGAGTTGAAGGAAATTAA+AGG + chr7_3:56334530-56334549 Msa1110900:CDS 30.0%
AGTTTCTTCGTGTTTAAATC+TGG - chr7_3:56334566-56334585 None:intergenic 30.0%
AATGTTCCTAAGATCAATGA+TGG + chr7_3:56334733-56334752 Msa1110900:three_prime_UTR 30.0%
! GTTGAAGAAATGTAGCTTTT+CGG - chr7_3:56333482-56333501 None:intergenic 30.0%
!! CTTTTTGTCACTATTTCTTC+TGG - chr7_3:56333601-56333620 None:intergenic 30.0%
AGGTTTATATACACTTCAAG+TGG + chr7_3:56333679-56333698 Msa1110900:CDS 30.0%
!! CTTAGAAGTGTTAAACCATT+TGG + chr7_3:56333772-56333791 Msa1110900:CDS 30.0%
!! TTATGCTGTTTCTAAGACTT+TGG + chr7_3:56333801-56333820 Msa1110900:CDS 30.0%
! CTTGAATTTGGTGAACAAAA+TGG + chr7_3:56333838-56333857 Msa1110900:CDS 30.0%
ACAAAACGACCAACAATAAA+AGG - chr7_3:56333889-56333908 None:intergenic 30.0%
CATACCTAATACCAAAACAA+GGG - chr7_3:56333944-56333963 None:intergenic 30.0%
TCATACCTAATACCAAAACA+AGG - chr7_3:56333945-56333964 None:intergenic 30.0%
! ATGAGATCGTTGATAAAGAT+TGG + chr7_3:56334226-56334245 Msa1110900:intron 30.0%
TCTTCAATAGGTACAATGAA+TGG - chr7_3:56334458-56334477 None:intergenic 30.0%
! GATGAGTTGAAGGAAATTAA+AGG + chr7_3:56334530-56334549 Msa1110900:CDS 30.0%
AGTTTCTTCGTGTTTAAATC+TGG - chr7_3:56334566-56334585 None:intergenic 30.0%
AATGTTCCTAAGATCAATGA+TGG + chr7_3:56334733-56334752 Msa1110900:three_prime_UTR 30.0%
!! TATTTCTTCTGGTTCACTCA+CGG - chr7_3:56333590-56333609 None:intergenic 35.0%
TGAATTCAAAGACAGTGAAG+AGG + chr7_3:56333659-56333678 Msa1110900:CDS 35.0%
TGGAAAAGACAATGATGTGT+TGG + chr7_3:56333720-56333739 Msa1110900:CDS 35.0%
! GAAGTGTTAAACCATTTGGT+TGG + chr7_3:56333776-56333795 Msa1110900:CDS 35.0%
ACAGCATAATTCCAACCAAA+TGG - chr7_3:56333790-56333809 None:intergenic 35.0%
GAGAAAGCTGTTCTTGAATT+TGG + chr7_3:56333826-56333845 Msa1110900:CDS 35.0%
TCAATAGAATCAGGAAGCTT+AGG - chr7_3:56333916-56333935 None:intergenic 35.0%
!! TATTGAGAAAGCCCTTGTTT+TGG + chr7_3:56333930-56333949 Msa1110900:CDS 35.0%
!!! AAAGCCCTTGTTTTGGTATT+AGG + chr7_3:56333937-56333956 Msa1110900:CDS 35.0%
CAGTCATAATCTATGAAGCA+CGG - chr7_3:56334162-56334181 None:intergenic 35.0%
CAACGATCTCATGATTGAAA+TGG - chr7_3:56334218-56334237 None:intergenic 35.0%
GCAGGCAAAAAAGAACAAAT+TGG + chr7_3:56334335-56334354 Msa1110900:intron 35.0%
AGTTGAGACATCTCTTCAAT+AGG - chr7_3:56334470-56334489 None:intergenic 35.0%
! ACTAACAGTAGATGAGTTGA+AGG + chr7_3:56334520-56334539 Msa1110900:CDS 35.0%
! TGAAGGAAATTAAAGGTGCA+AGG + chr7_3:56334537-56334556 Msa1110900:CDS 35.0%
TTTAAACACGAAGAAACTCG+TGG + chr7_3:56334568-56334587 Msa1110900:CDS 35.0%
ATTCAATGTTGCAAGGAGAA+AGG + chr7_3:56334641-56334660 Msa1110900:CDS 35.0%
CATTAGCCATCATTGATCTT+AGG - chr7_3:56334742-56334761 None:intergenic 35.0%
!! TATTTCTTCTGGTTCACTCA+CGG - chr7_3:56333590-56333609 None:intergenic 35.0%
TGAATTCAAAGACAGTGAAG+AGG + chr7_3:56333659-56333678 Msa1110900:CDS 35.0%
TGGAAAAGACAATGATGTGT+TGG + chr7_3:56333720-56333739 Msa1110900:CDS 35.0%
! GAAGTGTTAAACCATTTGGT+TGG + chr7_3:56333776-56333795 Msa1110900:CDS 35.0%
ACAGCATAATTCCAACCAAA+TGG - chr7_3:56333790-56333809 None:intergenic 35.0%
GAGAAAGCTGTTCTTGAATT+TGG + chr7_3:56333826-56333845 Msa1110900:CDS 35.0%
TCAATAGAATCAGGAAGCTT+AGG - chr7_3:56333916-56333935 None:intergenic 35.0%
!! TATTGAGAAAGCCCTTGTTT+TGG + chr7_3:56333930-56333949 Msa1110900:CDS 35.0%
!!! AAAGCCCTTGTTTTGGTATT+AGG + chr7_3:56333937-56333956 Msa1110900:CDS 35.0%
CAGTCATAATCTATGAAGCA+CGG - chr7_3:56334162-56334181 None:intergenic 35.0%
CAACGATCTCATGATTGAAA+TGG - chr7_3:56334218-56334237 None:intergenic 35.0%
GCAGGCAAAAAAGAACAAAT+TGG + chr7_3:56334335-56334354 Msa1110900:intron 35.0%
AGTTGAGACATCTCTTCAAT+AGG - chr7_3:56334470-56334489 None:intergenic 35.0%
! ACTAACAGTAGATGAGTTGA+AGG + chr7_3:56334520-56334539 Msa1110900:CDS 35.0%
! TGAAGGAAATTAAAGGTGCA+AGG + chr7_3:56334537-56334556 Msa1110900:CDS 35.0%
TTTAAACACGAAGAAACTCG+TGG + chr7_3:56334568-56334587 Msa1110900:CDS 35.0%
ATTCAATGTTGCAAGGAGAA+AGG + chr7_3:56334641-56334660 Msa1110900:CDS 35.0%
CATTAGCCATCATTGATCTT+AGG - chr7_3:56334742-56334761 None:intergenic 35.0%
!! GGTTCTGCTGTTTCATTCAA+TGG + chr7_3:56333700-56333719 Msa1110900:CDS 40.0%
ATGTGTTGGATGAGAGTGAT+TGG + chr7_3:56333734-56333753 Msa1110900:CDS 40.0%
AGGGCTTTCTCAATAGAATC+AGG - chr7_3:56333925-56333944 None:intergenic 40.0%
TGATCTATGAAGCACGGATA+CGG + chr7_3:56334021-56334040 Msa1110900:intron 40.0%
CGATCTCATGATTGAAATGG+CGG - chr7_3:56334215-56334234 None:intergenic 40.0%
AACGGTCATATACCGAGTTT+AGG - chr7_3:56334289-56334308 None:intergenic 40.0%
GTCAATGGGTAAAGATCGAA+CGG - chr7_3:56334307-56334326 None:intergenic 40.0%
CATCATCAACATGTACCATG+TGG - chr7_3:56334373-56334392 None:intergenic 40.0%
!! CATGGTACATGTTGATGATG+TGG + chr7_3:56334373-56334392 Msa1110900:CDS 40.0%
CTACTTGAGAATTCTGTTCC+AGG + chr7_3:56334413-56334432 Msa1110900:CDS 40.0%
CGATGCAATTCAATGTTGCA+AGG + chr7_3:56334634-56334653 Msa1110900:CDS 40.0%
!! GGTTCTGCTGTTTCATTCAA+TGG + chr7_3:56333700-56333719 Msa1110900:CDS 40.0%
ATGTGTTGGATGAGAGTGAT+TGG + chr7_3:56333734-56333753 Msa1110900:CDS 40.0%
AGGGCTTTCTCAATAGAATC+AGG - chr7_3:56333925-56333944 None:intergenic 40.0%
TGATCTATGAAGCACGGATA+CGG + chr7_3:56334021-56334040 Msa1110900:intron 40.0%
CGATCTCATGATTGAAATGG+CGG - chr7_3:56334215-56334234 None:intergenic 40.0%
AACGGTCATATACCGAGTTT+AGG - chr7_3:56334289-56334308 None:intergenic 40.0%
GTCAATGGGTAAAGATCGAA+CGG - chr7_3:56334307-56334326 None:intergenic 40.0%
CATCATCAACATGTACCATG+TGG - chr7_3:56334373-56334392 None:intergenic 40.0%
!! CATGGTACATGTTGATGATG+TGG + chr7_3:56334373-56334392 Msa1110900:CDS 40.0%
CTACTTGAGAATTCTGTTCC+AGG + chr7_3:56334413-56334432 Msa1110900:CDS 40.0%
CGATGCAATTCAATGTTGCA+AGG + chr7_3:56334634-56334653 Msa1110900:CDS 40.0%
AGCTTCCTGACAAATCTACC+CGG + chr7_3:56333451-56333470 Msa1110900:CDS 45.0%
! ATGTAGCTTTTCGGATGCAC+CGG - chr7_3:56333473-56333492 None:intergenic 45.0%
ACTGTCTGGGTTGCTTAGAT+CGG - chr7_3:56333506-56333525 None:intergenic 45.0%
GTGACAAAAAGAACCGTCGA+TGG + chr7_3:56333610-56333629 Msa1110900:CDS 45.0%
!! ACCCATTGACTTTGATGTGC+AGG + chr7_3:56334317-56334336 Msa1110900:intron 45.0%
GCCTGCACATCAAAGTCAAT+GGG - chr7_3:56334321-56334340 None:intergenic 45.0%
TGCCTGCACATCAAAGTCAA+TGG - chr7_3:56334322-56334341 None:intergenic 45.0%
CTTGAGAATTCTGTTCCAGG+AGG + chr7_3:56334416-56334435 Msa1110900:CDS 45.0%
GAGCAATTGTATCTACCTCC+TGG - chr7_3:56334434-56334453 None:intergenic 45.0%
AGCTTCCTGACAAATCTACC+CGG + chr7_3:56333451-56333470 Msa1110900:CDS 45.0%
! ATGTAGCTTTTCGGATGCAC+CGG - chr7_3:56333473-56333492 None:intergenic 45.0%
ACTGTCTGGGTTGCTTAGAT+CGG - chr7_3:56333506-56333525 None:intergenic 45.0%
GTGACAAAAAGAACCGTCGA+TGG + chr7_3:56333610-56333629 Msa1110900:CDS 45.0%
!! ACCCATTGACTTTGATGTGC+AGG + chr7_3:56334317-56334336 Msa1110900:intron 45.0%
GCCTGCACATCAAAGTCAAT+GGG - chr7_3:56334321-56334340 None:intergenic 45.0%
TGCCTGCACATCAAAGTCAA+TGG - chr7_3:56334322-56334341 None:intergenic 45.0%
CTTGAGAATTCTGTTCCAGG+AGG + chr7_3:56334416-56334435 Msa1110900:CDS 45.0%
GAGCAATTGTATCTACCTCC+TGG - chr7_3:56334434-56334453 None:intergenic 45.0%
ATGCACCGGGTAGATTTGTC+AGG - chr7_3:56333459-56333478 None:intergenic 50.0%
! TGTAGCTTTTCGGATGCACC+GGG - chr7_3:56333472-56333491 None:intergenic 50.0%
TTGCTGCAGCGAAACTGTCT+GGG - chr7_3:56333519-56333538 None:intergenic 50.0%
ATTGCTGCAGCGAAACTGTC+TGG - chr7_3:56333520-56333539 None:intergenic 50.0%
AGTTTCGCTGCAGCAATCGA+AGG + chr7_3:56333523-56333542 Msa1110900:CDS 50.0%
GCAGCAATCGAAGGATGTGT+CGG + chr7_3:56333532-56333551 Msa1110900:CDS 50.0%
CAGCAATCGAAGGATGTGTC+GGG + chr7_3:56333533-56333552 Msa1110900:CDS 50.0%
AGTCAATTGGTGAAGCGGTG+TGG - chr7_3:56333564-56333583 None:intergenic 50.0%
GGCGAAGTCAATTGGTGAAG+CGG - chr7_3:56333569-56333588 None:intergenic 50.0%
TCACTCACGGCGAAGTCAAT+TGG - chr7_3:56333577-56333596 None:intergenic 50.0%
AATGCCTAATGCGCCATCGA+CGG - chr7_3:56333626-56333645 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG - chr7_3:56334151-56334170 None:intergenic 50.0%
TGGTGTGACACGTTTCCACA+TGG + chr7_3:56334355-56334374 Msa1110900:CDS 50.0%
ACGAAGAAACTCGTGGATGC+TGG + chr7_3:56334575-56334594 Msa1110900:CDS 50.0%
ATGCACCGGGTAGATTTGTC+AGG - chr7_3:56333459-56333478 None:intergenic 50.0%
! TGTAGCTTTTCGGATGCACC+GGG - chr7_3:56333472-56333491 None:intergenic 50.0%
TTGCTGCAGCGAAACTGTCT+GGG - chr7_3:56333519-56333538 None:intergenic 50.0%
ATTGCTGCAGCGAAACTGTC+TGG - chr7_3:56333520-56333539 None:intergenic 50.0%
AGTTTCGCTGCAGCAATCGA+AGG + chr7_3:56333523-56333542 Msa1110900:CDS 50.0%
GCAGCAATCGAAGGATGTGT+CGG + chr7_3:56333532-56333551 Msa1110900:CDS 50.0%
CAGCAATCGAAGGATGTGTC+GGG + chr7_3:56333533-56333552 Msa1110900:CDS 50.0%
AGTCAATTGGTGAAGCGGTG+TGG - chr7_3:56333564-56333583 None:intergenic 50.0%
GGCGAAGTCAATTGGTGAAG+CGG - chr7_3:56333569-56333588 None:intergenic 50.0%
TCACTCACGGCGAAGTCAAT+TGG - chr7_3:56333577-56333596 None:intergenic 50.0%
AATGCCTAATGCGCCATCGA+CGG - chr7_3:56333626-56333645 None:intergenic 50.0%
TATGAAGCACGGACACTCCT+CGG - chr7_3:56334151-56334170 None:intergenic 50.0%
TGGTGTGACACGTTTCCACA+TGG + chr7_3:56334355-56334374 Msa1110900:CDS 50.0%
ACGAAGAAACTCGTGGATGC+TGG + chr7_3:56334575-56334594 Msa1110900:CDS 50.0%
AGAACCGTCGATGGCGCATT+AGG + chr7_3:56333619-56333638 Msa1110900:CDS 55.0%
TGAAGCACGGATACGGACAC+TGG + chr7_3:56334028-56334047 Msa1110900:intron 55.0%
TACGGACACTGGACACGACA+CGG + chr7_3:56334039-56334058 Msa1110900:intron 55.0%
ATGAAGCACGGACACTCCTC+GGG - chr7_3:56334150-56334169 None:intergenic 55.0%
AGAACCGTCGATGGCGCATT+AGG + chr7_3:56333619-56333638 Msa1110900:CDS 55.0%
TGAAGCACGGATACGGACAC+TGG + chr7_3:56334028-56334047 Msa1110900:intron 55.0%
TACGGACACTGGACACGACA+CGG + chr7_3:56334039-56334058 Msa1110900:intron 55.0%
ATGAAGCACGGACACTCCTC+GGG - chr7_3:56334150-56334169 None:intergenic 55.0%
GTCGTGTCACGCCTAACCCG+AGG + chr7_3:56334131-56334150 Msa1110900:intron 65.0%
GCACGGACACTCCTCGGGTT+AGG - chr7_3:56334145-56334164 None:intergenic 65.0%
GTCGTGTCACGCCTAACCCG+AGG + chr7_3:56334131-56334150 Msa1110900:intron 65.0%
GCACGGACACTCCTCGGGTT+AGG - chr7_3:56334145-56334164 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 56333433 56334876 56333433 ID=Msa1110900;Name=Msa1110900
chr7_3 mRNA 56333433 56334876 56333433 ID=Msa1110900-mRNA-1;Parent=Msa1110900;Name=Msa1110900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.5|1|1|1|2|203|286
chr7_3 exon 56333433 56333958 56333433 ID=Msa1110900-mRNA-1:exon:11879;Parent=Msa1110900-mRNA-1
chr7_3 exon 56334339 56334876 56334339 ID=Msa1110900-mRNA-1:exon:11880;Parent=Msa1110900-mRNA-1
chr7_3 CDS 56333433 56333958 56333433 ID=Msa1110900-mRNA-1:cds;Parent=Msa1110900-mRNA-1
chr7_3 CDS 56334339 56334673 56334339 ID=Msa1110900-mRNA-1:cds;Parent=Msa1110900-mRNA-1
chr7_3 three_prime_UTR 56334674 56334876 56334674 ID=Msa1110900-mRNA-1:three_prime_utr;Parent=Msa1110900-mRNA-1
Gene Sequence

>Msa1110900

GAACGTAAGAGGGATGTTAGCTTCCTGACAAATCTACCCGGTGCATCCGAAAAGCTACATTTCTTCAACGCCGATCTAAGCAACCCAGACAGTTTCGCTGCAGCAATCGAAGGATGTGTCGGGATATTCCACACCGCTTCACCAATTGACTTCGCCGTGAGTGAACCAGAAGAAATAGTGACAAAAAGAACCGTCGATGGCGCATTAGGCATTTTAAAAGCATGTGTGAATTCAAAGACAGTGAAGAGGTTTATATACACTTCAAGTGGTTCTGCTGTTTCATTCAATGGAAAAGACAATGATGTGTTGGATGAGAGTGATTGGAGTGATGTTGATTTGCTTAGAAGTGTTAAACCATTTGGTTGGAATTATGCTGTTTCTAAGACTTTGGCTGAGAAAGCTGTTCTTGAATTTGGTGAACAAAATGGGATTGATGTTGTTACTTTGATTCTTCCTTTTATTGTTGGTCGTTTTGTTTGTCCTAAGCTTCCTGATTCTATTGAGAAAGCCCTTGTTTTGGTATTAGGCAAAAAAGAACAAATTGGTGTGACACGTTTCCACATGGTACATGTTGATGATGTGGCTAGAGCACATATATATCTACTTGAGAATTCTGTTCCAGGAGGTAGATACAATTGCTCACCATTCATTGTACCTATTGAAGAGATGTCTCAACTTCTTTCAGCCAAATATCCAGAATATCAAATACTAACAGTAGATGAGTTGAAGGAAATTAAAGGTGCAAGGTTACCAGATTTAAACACGAAGAAACTCGTGGATGCTGGTTTCGAATTTAAGTACACTATCGAAGATATGTTCGACGATGCAATTCAATGTTGCAAGGAGAAAGGCTATCTCTAA

Protein sequence

>Msa1110900

ERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDNDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFEFKYTIEDMFDDAIQCCKEKGYL*