AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1202110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202110 MtrunA17_Chr8g0372491 96.562 320 11 0 2 321 1 320 0.0 642
Msa1202110 MtrunA17_Chr7g0272441 47.368 323 158 4 4 318 1 319 1.09e-108 319
Msa1202110 MtrunA17_Chr7g0272501 47.988 323 156 4 4 318 1 319 2.33e-108 318
Msa1202110 MtrunA17_Chr4g0067581 47.468 316 162 3 7 318 40 355 7.86e-108 318
Msa1202110 MtrunA17_Chr7g0272431 46.440 323 161 5 4 318 1 319 1.53e-107 316
Msa1202110 MtrunA17_Chr7g0272531 48.276 319 161 3 4 318 31 349 1.98e-107 317
Msa1202110 MtrunA17_Chr7g0272171 47.649 319 163 3 4 318 1 319 1.30e-106 313
Msa1202110 MtrunA17_Chr7g0272451 47.188 320 160 5 4 318 1 316 2.24e-106 313
Msa1202110 MtrunA17_Chr7g0272481 46.708 319 166 3 4 318 1 319 4.75e-106 312
Msa1202110 MtrunA17_Chr7g0269471 46.688 317 167 2 4 318 1 317 1.48e-105 311
Msa1202110 MtrunA17_Chr7g0272181 47.335 319 164 3 4 318 1 319 4.49e-105 310
Msa1202110 MtrunA17_Chr4g0000111 44.410 322 172 5 4 318 1 322 1.72e-95 285
Msa1202110 MtrunA17_Chr4g0047701 38.050 318 184 6 4 317 1 309 1.98e-73 229
Msa1202110 MtrunA17_Chr4g0047681 37.736 318 185 6 4 317 1 309 3.75e-71 223
Msa1202110 MtrunA17_Chr2g0324141 35.202 321 196 6 4 320 1 313 9.36e-67 212
Msa1202110 MtrunA17_Chr2g0324161 34.268 321 199 6 4 320 1 313 4.03e-65 207
Msa1202110 MtrunA17_Chr1g0192291 53.797 158 70 1 4 158 1 158 1.44e-59 188
Msa1202110 MtrunA17_Chr7g0272471 52.564 156 73 1 4 158 1 156 1.59e-59 188
Msa1202110 MtrunA17_Chr7g0272461 44.156 77 43 0 206 282 29 105 1.17e-20 86.7
Msa1202110 MtrunA17_Chr3g0086531 46.575 73 39 0 82 154 1 73 1.12e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202110 AT3G51000.1 63.009 319 113 4 5 319 3 320 4.55e-152 429
Msa1202110 AT4G02340.1 47.812 320 158 5 4 318 1 316 4.76e-107 315
Msa1202110 AT3G05600.1 46.341 328 159 6 4 318 1 324 1.99e-100 299
Msa1202110 AT2G26740.1 47.664 321 159 5 7 318 1 321 3.92e-91 275
Msa1202110 AT4G15960.1 41.745 321 178 4 7 318 54 374 4.10e-88 269
Msa1202110 AT2G26750.1 46.372 317 162 5 7 315 1 317 2.16e-87 265
Msa1202110 AT4G15955.3 41.325 317 148 8 8 311 6 297 8.85e-81 248
Msa1202110 AT3G05600.2 46.559 247 117 5 4 239 1 243 4.08e-74 228
Msa1202110 AT4G15955.2 50.289 173 75 3 8 169 6 178 1.82e-56 181
Msa1202110 AT4G15955.1 50.303 165 71 3 8 161 6 170 2.51e-53 173

Find 88 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAGCATGATAACCATTT+TGG 0.142448 8_1:-55625408 None:intergenic
ATTGGTCTTCTTGATCATTT+TGG 0.150021 8_1:+55625514 Msa1202110:CDS
CGCCAAGAATACCATATTTC+TGG 0.182663 8_1:-55625364 None:intergenic
AGCTCATGTTTGCCAATTTC+AGG 0.222501 8_1:+55626640 Msa1202110:CDS
CATATTGTTGGTGACCTTAT+TGG 0.232766 8_1:+55625496 Msa1202110:CDS
ACGATACACAACAACTTATT+AGG 0.240318 8_1:+55625229 None:intergenic
CTCAACTACTTGGCCCAAAA+TGG 0.297865 8_1:+55625394 Msa1202110:CDS
TTCATGGTTTCCCAGAAATA+TGG 0.300646 8_1:+55625353 Msa1202110:CDS
CCTAATCTAGAGATAGTTTA+CGG 0.303872 8_1:-55627295 None:intergenic
AAGGGTAATCTACCTGAAAT+TGG 0.307281 8_1:-55626652 None:intergenic
TCCCAGAAATATGGTATTCT+TGG 0.309032 8_1:+55625362 Msa1202110:CDS
CCACTAGTTCTACTGCTTCA+TGG 0.344231 8_1:+55625337 Msa1202110:CDS
GATGGCACCTAAGTCTATTT+AGG 0.355832 8_1:+55626516 Msa1202110:CDS
CCGTAAACTATCTCTAGATT+AGG 0.356075 8_1:+55627295 Msa1202110:CDS
GTGTATGAATTGGGGTTGAT+AGG 0.358412 8_1:-55625466 None:intergenic
ACAAACCCCTTCACTCTATC+AGG 0.370013 8_1:-55626539 None:intergenic
TACACTCTTCAACATATTGT+TGG 0.372583 8_1:+55625484 Msa1202110:CDS
CGTAAACTATCTCTAGATTA+GGG 0.379541 8_1:+55627296 Msa1202110:CDS
TCTCCGGCAATAAACTTAGT+TGG 0.388206 8_1:-55627113 None:intergenic
TGATTTCTTGCCAACTCCTT+CGG 0.394280 8_1:+55626865 Msa1202110:CDS
GTTCCAACTAAGTTTATTGC+CGG 0.395155 8_1:+55627110 Msa1202110:CDS
GCAGACAAATTCCAAGAGTC+TGG 0.396715 8_1:+55626929 Msa1202110:CDS
TGTTGAAGAGTGTATGAATT+GGG 0.407460 8_1:-55625475 None:intergenic
AGAGAAAGCTCAACAAGTTT+CGG 0.408255 8_1:+55627253 Msa1202110:CDS
GCACCTGATCTAAGAGGATA+TGG 0.428528 8_1:+55625430 Msa1202110:CDS
TACATGTATATTTATTCCGT+TGG 0.437349 8_1:-55625296 None:intergenic
AAAACCAACATCTTTGTCTC+CGG 0.451884 8_1:-55627129 None:intergenic
GAAACTATAAGAAAAGTATA+CGG 0.452414 8_1:+55626611 Msa1202110:CDS
GTTGGAGATCTTGGAAAGTA+AGG 0.455828 8_1:-55626575 None:intergenic
TAGAGATAGTTTACGGATGA+AGG 0.460572 8_1:-55627288 None:intergenic
CTTGAAGTGGTTATACTAGA+TGG 0.462250 8_1:+55627212 Msa1202110:CDS
CACCGGTGAAACCAGACTCT+TGG 0.472500 8_1:-55626940 None:intergenic
AGTATAACCACTTCAAGGTT+AGG 0.474123 8_1:-55627206 None:intergenic
TTCCAAGAGTCTGGTTTCAC+CGG 0.475025 8_1:+55626938 Msa1202110:CDS
AATGATCAAGAAGACCAATA+AGG 0.475165 8_1:-55625510 None:intergenic
GCCAAGAATACCATATTTCT+GGG 0.482112 8_1:-55625363 None:intergenic
GGGCCAAGTAGTTGAGTTGG+TGG 0.492922 8_1:-55625387 None:intergenic
TCACCATATCCTCTTAGATC+AGG 0.494603 8_1:-55625433 None:intergenic
CTTTCTCTTGATGTATATAG+TGG 0.499966 8_1:-55627238 None:intergenic
CATCTAGTATAACCACTTCA+AGG 0.501344 8_1:-55627211 None:intergenic
TGCGCCACAAGCTAGACAAA+GGG 0.501762 8_1:-55627358 None:intergenic
TTTGGGCCAAGTAGTTGAGT+TGG 0.505675 8_1:-55625390 None:intergenic
CATGTAGCAGAACAAGGAAC+AGG 0.506519 8_1:+55625313 Msa1202110:CDS
ATTGGGGTTGATAGGAGAAT+CGG 0.507484 8_1:-55625458 None:intergenic
TGAATGAAGGCATATGTAGT+AGG 0.512881 8_1:+55626470 Msa1202110:intron
TATCAGGCCTAAATAGACTT+AGG 0.515370 8_1:-55626523 None:intergenic
CCACCCCTTTGTCTAGCTTG+TGG 0.515398 8_1:+55627354 Msa1202110:three_prime_UTR
ATAGTTTACGGATGAAGGAA+AGG 0.519190 8_1:-55627283 None:intergenic
ATGTTGAAGAGTGTATGAAT+TGG 0.524008 8_1:-55625476 None:intergenic
CATATGTAGTAGGATCTGAC+TGG 0.526683 8_1:+55626480 Msa1202110:CDS
GTTATCTTTGATCCTTGCCA+TGG 0.532855 8_1:-55627086 None:intergenic
CAAGGTTAGGAACAAGACTC+TGG 0.533494 8_1:-55627193 None:intergenic
GCGCCACCAACTCAACTACT+TGG 0.535864 8_1:+55625384 Msa1202110:CDS
TATAACAGCTCCTCCTGGCA+TGG 0.539454 8_1:+55626835 Msa1202110:CDS
TCTTGTTCCTAACCTTGAAG+TGG 0.541399 8_1:+55627199 Msa1202110:CDS
TTGCGTGGTTGGCAGGAACC+AGG 0.547693 8_1:+55626734 Msa1202110:intron
AAATCAACAATCTCCATGCC+AGG 0.548033 8_1:-55626848 None:intergenic
TCTGACTGGGGAGCAAACAT+TGG 0.557088 8_1:+55626494 Msa1202110:CDS
TTTAGGCCTGATAGAGTGAA+GGG 0.566974 8_1:+55626533 Msa1202110:CDS
ATAAGAAAAGTATACGGAGA+TGG 0.570679 8_1:+55626617 Msa1202110:CDS
ATTGCCGGAGACAAAGATGT+TGG 0.571908 8_1:+55627125 Msa1202110:CDS
ACTGGGGAGCAAACATTGGA+TGG 0.572887 8_1:+55626498 Msa1202110:CDS
GCTGTTGCACCTGATCTAAG+AGG 0.588705 8_1:+55625424 Msa1202110:CDS
ATATGTAGTAGGATCTGACT+GGG 0.595018 8_1:+55626481 Msa1202110:CDS
AAAGCTCTCTCTGCACGACC+TGG 0.595328 8_1:-55626752 None:intergenic
ATCCACGACGGCAAAACCGA+AGG 0.595962 8_1:-55626881 None:intergenic
GACGGCAAAACCGAAGGAGT+TGG 0.599928 8_1:-55626875 None:intergenic
ACTCAATGGTTACAGAAGCT+GGG 0.603841 8_1:+55627052 Msa1202110:intron
CACCAAAGAATCAAAACCAA+CGG 0.604850 8_1:+55625280 Msa1202110:CDS
ATTTAGGCCTGATAGAGTGA+AGG 0.608580 8_1:+55626532 Msa1202110:CDS
GTGCGCCACAAGCTAGACAA+AGG 0.608866 8_1:-55627359 None:intergenic
GATAACCGAGGAAGAACTCA+TGG 0.608940 8_1:+55626901 Msa1202110:CDS
CCATGAAGCAGTAGAACTAG+TGG 0.617178 8_1:-55625337 None:intergenic
CACTTCAGTCATGAAGAACA+TGG 0.621193 8_1:-55625254 None:intergenic
GTTGAAGAGTGTATGAATTG+GGG 0.627329 8_1:-55625474 None:intergenic
AATATACATGTAGCAGAACA+AGG 0.633512 8_1:+55625307 Msa1202110:CDS
GAAAGCTCAACAAGTTTCGG+AGG 0.645089 8_1:+55627256 Msa1202110:CDS
TTAGGCCTGATAGAGTGAAG+GGG 0.646633 8_1:+55626534 Msa1202110:CDS
GAACTTCTAGCACCATGGCA+AGG 0.648382 8_1:+55627074 Msa1202110:CDS
GCGATAGTAATTGAATGCAC+CGG 0.666695 8_1:-55626957 None:intergenic
CCACAAGCTAGACAAAGGGG+TGG 0.688618 8_1:-55627354 None:intergenic
TTTGCCGTCGTGGATAACCG+AGG 0.689324 8_1:+55626889 Msa1202110:CDS
GCTGGGAACTTCTAGCACCA+TGG 0.691193 8_1:+55627069 Msa1202110:CDS
TCTTCCTCGGTTATCCACGA+CGG 0.703931 8_1:-55626893 None:intergenic
ATTCAATTACTATCGCGCAA+TGG 0.705978 8_1:+55626964 Msa1202110:CDS
TCAACAATCTCCATGCCAGG+AGG 0.721559 8_1:-55626845 None:intergenic
GCGCCACAAGCTAGACAAAG+GGG 0.722760 8_1:-55627357 None:intergenic
TATGTAGTAGGATCTGACTG+GGG 0.804727 8_1:+55626482 Msa1202110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAACTAAAAAAACG+TGG - chr8_1:55625582-55625601 None:intergenic 15.0%
!! TATTTCAATAAATATCTACA+CGG - chr8_1:55626381-55626400 None:intergenic 15.0%
!! AAAACTAAACAAAAAAACAT+AGG - chr8_1:55627009-55627028 None:intergenic 15.0%
!! ATTATTAAACTAAAAAAACG+TGG - chr8_1:55625582-55625601 None:intergenic 15.0%
!! TATTTCAATAAATATCTACA+CGG - chr8_1:55626381-55626400 None:intergenic 15.0%
!! AAAACTAAACAAAAAAACAT+AGG - chr8_1:55627009-55627028 None:intergenic 15.0%
!!! TTATATCAAGTTGAATATTG+TGG - chr8_1:55625763-55625782 None:intergenic 20.0%
!!! TACTTATCTATTTTCTTTAG+AGG - chr8_1:55625961-55625980 None:intergenic 20.0%
!! TACAATGGTAAATTGTAATT+TGG - chr8_1:55626075-55626094 None:intergenic 20.0%
!!! AACTTTAGGTTTTTACAAAT+GGG + chr8_1:55626183-55626202 Msa1202110:intron 20.0%
!!! AAGTTTACATATATCGTTTT+AGG + chr8_1:55626322-55626341 Msa1202110:intron 20.0%
!! AAATTAGGAAATTAGGAAAA+AGG - chr8_1:55626433-55626452 None:intergenic 20.0%
!! AGAGAATAAATTAGGAAATT+AGG - chr8_1:55626440-55626459 None:intergenic 20.0%
!!! GAAACTATAAGAAAAGTATA+CGG + chr8_1:55626611-55626630 Msa1202110:CDS 20.0%
!! ACAAAAAAACATAGGAAAAA+TGG - chr8_1:55627001-55627020 None:intergenic 20.0%
!!! TTATATCAAGTTGAATATTG+TGG - chr8_1:55625763-55625782 None:intergenic 20.0%
!!! TACTTATCTATTTTCTTTAG+AGG - chr8_1:55625961-55625980 None:intergenic 20.0%
!! TACAATGGTAAATTGTAATT+TGG - chr8_1:55626075-55626094 None:intergenic 20.0%
!!! AACTTTAGGTTTTTACAAAT+GGG + chr8_1:55626183-55626202 Msa1202110:intron 20.0%
!!! AAGTTTACATATATCGTTTT+AGG + chr8_1:55626322-55626341 Msa1202110:intron 20.0%
!! AAATTAGGAAATTAGGAAAA+AGG - chr8_1:55626433-55626452 None:intergenic 20.0%
!! AGAGAATAAATTAGGAAATT+AGG - chr8_1:55626440-55626459 None:intergenic 20.0%
!!! GAAACTATAAGAAAAGTATA+CGG + chr8_1:55626611-55626630 Msa1202110:CDS 20.0%
!! ACAAAAAAACATAGGAAAAA+TGG - chr8_1:55627001-55627020 None:intergenic 20.0%
! TACATGTATATTTATTCCGT+TGG - chr8_1:55625299-55625318 None:intergenic 25.0%
! ATTAAACTAAAAAAACGTGG+AGG - chr8_1:55625579-55625598 None:intergenic 25.0%
! ATCTTTGAACGTGATTAATT+AGG - chr8_1:55625666-55625685 None:intergenic 25.0%
!!! TTATCTATTTTCTTTAGAGG+TGG - chr8_1:55625958-55625977 None:intergenic 25.0%
! ATTACAATTTACCATTGTAC+CGG + chr8_1:55626076-55626095 Msa1202110:intron 25.0%
!!! CAACTTTAGGTTTTTACAAA+TGG + chr8_1:55626182-55626201 Msa1202110:intron 25.0%
!!! ACTTTAGGTTTTTACAAATG+GGG + chr8_1:55626184-55626203 Msa1202110:intron 25.0%
! AAACGATATATGTAAACTTG+AGG - chr8_1:55626321-55626340 None:intergenic 25.0%
!!! ATCGTTTTAGGTCTTAATTT+AGG + chr8_1:55626334-55626353 Msa1202110:intron 25.0%
! GAAATATAATTGTACGCAAT+TGG + chr8_1:55626395-55626414 Msa1202110:intron 25.0%
! AACTTTATCAAGCCATAAAA+GGG - chr8_1:55626673-55626692 None:intergenic 25.0%
! TAACTTTATCAAGCCATAAA+AGG - chr8_1:55626674-55626693 None:intergenic 25.0%
!! TAATTTTCATTGAAATTGCG+TGG + chr8_1:55626719-55626738 Msa1202110:intron 25.0%
!!! AAAGATGTTGGTTTTCAAAA+TGG + chr8_1:55627137-55627156 Msa1202110:CDS 25.0%
!!! AAGATGTTGGTTTTCAAAAT+GGG + chr8_1:55627138-55627157 Msa1202110:CDS 25.0%
! TACATGTATATTTATTCCGT+TGG - chr8_1:55625299-55625318 None:intergenic 25.0%
! ATTAAACTAAAAAAACGTGG+AGG - chr8_1:55625579-55625598 None:intergenic 25.0%
! ATCTTTGAACGTGATTAATT+AGG - chr8_1:55625666-55625685 None:intergenic 25.0%
!!! TTATCTATTTTCTTTAGAGG+TGG - chr8_1:55625958-55625977 None:intergenic 25.0%
! ATTACAATTTACCATTGTAC+CGG + chr8_1:55626076-55626095 Msa1202110:intron 25.0%
!!! CAACTTTAGGTTTTTACAAA+TGG + chr8_1:55626182-55626201 Msa1202110:intron 25.0%
!!! ACTTTAGGTTTTTACAAATG+GGG + chr8_1:55626184-55626203 Msa1202110:intron 25.0%
! AAACGATATATGTAAACTTG+AGG - chr8_1:55626321-55626340 None:intergenic 25.0%
!!! ATCGTTTTAGGTCTTAATTT+AGG + chr8_1:55626334-55626353 Msa1202110:intron 25.0%
! GAAATATAATTGTACGCAAT+TGG + chr8_1:55626395-55626414 Msa1202110:intron 25.0%
! AACTTTATCAAGCCATAAAA+GGG - chr8_1:55626673-55626692 None:intergenic 25.0%
! TAACTTTATCAAGCCATAAA+AGG - chr8_1:55626674-55626693 None:intergenic 25.0%
!! TAATTTTCATTGAAATTGCG+TGG + chr8_1:55626719-55626738 Msa1202110:intron 25.0%
!!! AAAGATGTTGGTTTTCAAAA+TGG + chr8_1:55627137-55627156 Msa1202110:CDS 25.0%
!!! AAGATGTTGGTTTTCAAAAT+GGG + chr8_1:55627138-55627157 Msa1202110:CDS 25.0%
AATATACATGTAGCAGAACA+AGG + chr8_1:55625307-55625326 Msa1202110:CDS 30.0%
! AACAGCATGATAACCATTTT+GGG - chr8_1:55625410-55625429 None:intergenic 30.0%
! TGTTGAAGAGTGTATGAATT+GGG - chr8_1:55625478-55625497 None:intergenic 30.0%
! ATGTTGAAGAGTGTATGAAT+TGG - chr8_1:55625479-55625498 None:intergenic 30.0%
TACACTCTTCAACATATTGT+TGG + chr8_1:55625484-55625503 Msa1202110:CDS 30.0%
AATGATCAAGAAGACCAATA+AGG - chr8_1:55625513-55625532 None:intergenic 30.0%
!!! ATTGGTCTTCTTGATCATTT+TGG + chr8_1:55625514-55625533 Msa1202110:CDS 30.0%
!! TGATCATTTTGGTGAACAAA+AGG + chr8_1:55625525-55625544 Msa1202110:CDS 30.0%
! GTTTAATTTAGCTGAGTAGA+TGG + chr8_1:55625688-55625707 Msa1202110:intron 30.0%
TTGTGGTCAATTCAACTATA+AGG + chr8_1:55625733-55625752 Msa1202110:intron 30.0%
! GGTAAATCGTTTGTGTTTTT+GGG - chr8_1:55625990-55626009 None:intergenic 30.0%
! TGGTAAATCGTTTGTGTTTT+TGG - chr8_1:55625991-55626010 None:intergenic 30.0%
GAGTCATATTCAACAACTTT+AGG + chr8_1:55626169-55626188 Msa1202110:intron 30.0%
! ATTTTGCCTACAACATGAAA+AGG - chr8_1:55626212-55626231 None:intergenic 30.0%
!! GTGTTATTGACTCAAACATA+TGG - chr8_1:55626293-55626312 None:intergenic 30.0%
TATATGTAAACTTGAGGTCT+TGG - chr8_1:55626315-55626334 None:intergenic 30.0%
TTAGGAAAAAGGATAGTTTG+AGG - chr8_1:55626422-55626441 None:intergenic 30.0%
TGGGATAGAGAGAATAAATT+AGG - chr8_1:55626448-55626467 None:intergenic 30.0%
ACATATGCCTTCATTCAAAT+GGG - chr8_1:55626467-55626486 None:intergenic 30.0%
TACATATGCCTTCATTCAAA+TGG - chr8_1:55626468-55626487 None:intergenic 30.0%
!! GTTTCAACAGTTTTATCTGT+TGG - chr8_1:55626596-55626615 None:intergenic 30.0%
! ATAAGAAAAGTATACGGAGA+TGG + chr8_1:55626617-55626636 Msa1202110:CDS 30.0%
!! AGAAGTTTTTGCTGATTACA+TGG + chr8_1:55626804-55626823 Msa1202110:CDS 30.0%
ATAGGAAAAATGGTACTTAC+AGG - chr8_1:55626991-55627010 None:intergenic 30.0%
ATCCATTTATTCACACTCAA+TGG + chr8_1:55627038-55627057 Msa1202110:intron 30.0%
AACCATTGAGTGTGAATAAA+TGG - chr8_1:55627043-55627062 None:intergenic 30.0%
!!! AGATGTTGGTTTTCAAAATG+GGG + chr8_1:55627139-55627158 Msa1202110:CDS 30.0%
CTTTCTCTTGATGTATATAG+TGG - chr8_1:55627241-55627260 None:intergenic 30.0%
CCTAATCTAGAGATAGTTTA+CGG - chr8_1:55627298-55627317 None:intergenic 30.0%
CGTAAACTATCTCTAGATTA+GGG + chr8_1:55627296-55627315 Msa1202110:CDS 30.0%
AATATACATGTAGCAGAACA+AGG + chr8_1:55625307-55625326 Msa1202110:CDS 30.0%
! AACAGCATGATAACCATTTT+GGG - chr8_1:55625410-55625429 None:intergenic 30.0%
! TGTTGAAGAGTGTATGAATT+GGG - chr8_1:55625478-55625497 None:intergenic 30.0%
! ATGTTGAAGAGTGTATGAAT+TGG - chr8_1:55625479-55625498 None:intergenic 30.0%
TACACTCTTCAACATATTGT+TGG + chr8_1:55625484-55625503 Msa1202110:CDS 30.0%
AATGATCAAGAAGACCAATA+AGG - chr8_1:55625513-55625532 None:intergenic 30.0%
!!! ATTGGTCTTCTTGATCATTT+TGG + chr8_1:55625514-55625533 Msa1202110:CDS 30.0%
!! TGATCATTTTGGTGAACAAA+AGG + chr8_1:55625525-55625544 Msa1202110:CDS 30.0%
! GTTTAATTTAGCTGAGTAGA+TGG + chr8_1:55625688-55625707 Msa1202110:intron 30.0%
TTGTGGTCAATTCAACTATA+AGG + chr8_1:55625733-55625752 Msa1202110:intron 30.0%
! GGTAAATCGTTTGTGTTTTT+GGG - chr8_1:55625990-55626009 None:intergenic 30.0%
! TGGTAAATCGTTTGTGTTTT+TGG - chr8_1:55625991-55626010 None:intergenic 30.0%
GAGTCATATTCAACAACTTT+AGG + chr8_1:55626169-55626188 Msa1202110:intron 30.0%
! ATTTTGCCTACAACATGAAA+AGG - chr8_1:55626212-55626231 None:intergenic 30.0%
!! GTGTTATTGACTCAAACATA+TGG - chr8_1:55626293-55626312 None:intergenic 30.0%
TATATGTAAACTTGAGGTCT+TGG - chr8_1:55626315-55626334 None:intergenic 30.0%
TTAGGAAAAAGGATAGTTTG+AGG - chr8_1:55626422-55626441 None:intergenic 30.0%
TGGGATAGAGAGAATAAATT+AGG - chr8_1:55626448-55626467 None:intergenic 30.0%
ACATATGCCTTCATTCAAAT+GGG - chr8_1:55626467-55626486 None:intergenic 30.0%
TACATATGCCTTCATTCAAA+TGG - chr8_1:55626468-55626487 None:intergenic 30.0%
!! GTTTCAACAGTTTTATCTGT+TGG - chr8_1:55626596-55626615 None:intergenic 30.0%
! ATAAGAAAAGTATACGGAGA+TGG + chr8_1:55626617-55626636 Msa1202110:CDS 30.0%
!! AGAAGTTTTTGCTGATTACA+TGG + chr8_1:55626804-55626823 Msa1202110:CDS 30.0%
ATAGGAAAAATGGTACTTAC+AGG - chr8_1:55626991-55627010 None:intergenic 30.0%
ATCCATTTATTCACACTCAA+TGG + chr8_1:55627038-55627057 Msa1202110:intron 30.0%
AACCATTGAGTGTGAATAAA+TGG - chr8_1:55627043-55627062 None:intergenic 30.0%
!!! AGATGTTGGTTTTCAAAATG+GGG + chr8_1:55627139-55627158 Msa1202110:CDS 30.0%
CTTTCTCTTGATGTATATAG+TGG - chr8_1:55627241-55627260 None:intergenic 30.0%
CCTAATCTAGAGATAGTTTA+CGG - chr8_1:55627298-55627317 None:intergenic 30.0%
CGTAAACTATCTCTAGATTA+GGG + chr8_1:55627296-55627315 Msa1202110:CDS 30.0%
CACCAAAGAATCAAAACCAA+CGG + chr8_1:55625280-55625299 Msa1202110:CDS 35.0%
!!! TTCCGTTGGTTTTGATTCTT+TGG - chr8_1:55625285-55625304 None:intergenic 35.0%
TTCATGGTTTCCCAGAAATA+TGG + chr8_1:55625353-55625372 Msa1202110:CDS 35.0%
TCCCAGAAATATGGTATTCT+TGG + chr8_1:55625362-55625381 Msa1202110:CDS 35.0%
GCCAAGAATACCATATTTCT+GGG - chr8_1:55625366-55625385 None:intergenic 35.0%
! CAACAGCATGATAACCATTT+TGG - chr8_1:55625411-55625430 None:intergenic 35.0%
! GTTGAAGAGTGTATGAATTG+GGG - chr8_1:55625477-55625496 None:intergenic 35.0%
!! CATATTGTTGGTGACCTTAT+TGG + chr8_1:55625496-55625515 Msa1202110:CDS 35.0%
TCAAGTCACAGTCAAAATTG+TGG + chr8_1:55625716-55625735 Msa1202110:intron 35.0%
CCTTAATCTCATGCAAATTG+TGG - chr8_1:55625812-55625831 None:intergenic 35.0%
CCACAATTTGCATGAGATTA+AGG + chr8_1:55625809-55625828 Msa1202110:intron 35.0%
!!! AATCGTTTGTGTTTTTGGGA+TGG - chr8_1:55625986-55626005 None:intergenic 35.0%
ACAAACGATTTACCAGAGTT+CGG + chr8_1:55625996-55626015 Msa1202110:intron 35.0%
TTCACTCATAACTCACAAGT+GGG - chr8_1:55626148-55626167 None:intergenic 35.0%
ATTCACTCATAACTCACAAG+TGG - chr8_1:55626149-55626168 None:intergenic 35.0%
TCTCTATCCCATTTGAATGA+AGG + chr8_1:55626457-55626476 Msa1202110:intron 35.0%
! TGAATGAAGGCATATGTAGT+AGG + chr8_1:55626470-55626489 Msa1202110:intron 35.0%
ATATGTAGTAGGATCTGACT+GGG + chr8_1:55626481-55626500 Msa1202110:CDS 35.0%
TATCAGGCCTAAATAGACTT+AGG - chr8_1:55626526-55626545 None:intergenic 35.0%
! GTTTTATCTGTTGGAGATCT+TGG - chr8_1:55626587-55626606 None:intergenic 35.0%
AAGGGTAATCTACCTGAAAT+TGG - chr8_1:55626655-55626674 None:intergenic 35.0%
! TCAGGTAGATTACCCTTTTA+TGG + chr8_1:55626658-55626677 Msa1202110:intron 35.0%
TTTCATTGAAATTGCGTGGT+TGG + chr8_1:55626723-55626742 Msa1202110:intron 35.0%
AAAAACCATGAGTTCTTCCT+CGG - chr8_1:55626909-55626928 None:intergenic 35.0%
ATTCAATTACTATCGCGCAA+TGG + chr8_1:55626964-55626983 Msa1202110:CDS 35.0%
GTTCCAACTAAGTTTATTGC+CGG + chr8_1:55627110-55627129 Msa1202110:CDS 35.0%
AAAACCAACATCTTTGTCTC+CGG - chr8_1:55627132-55627151 None:intergenic 35.0%
!!! GATGTTGGTTTTCAAAATGG+GGG + chr8_1:55627140-55627159 Msa1202110:CDS 35.0%
! GGTACAAAAGATTTTGTGGA+AGG + chr8_1:55627161-55627180 Msa1202110:CDS 35.0%
AGTATAACCACTTCAAGGTT+AGG - chr8_1:55627209-55627228 None:intergenic 35.0%
CATCTAGTATAACCACTTCA+AGG - chr8_1:55627214-55627233 None:intergenic 35.0%
CTTGAAGTGGTTATACTAGA+TGG + chr8_1:55627212-55627231 Msa1202110:CDS 35.0%
AGAGAAAGCTCAACAAGTTT+CGG + chr8_1:55627253-55627272 Msa1202110:CDS 35.0%
ATAGTTTACGGATGAAGGAA+AGG - chr8_1:55627286-55627305 None:intergenic 35.0%
TAGAGATAGTTTACGGATGA+AGG - chr8_1:55627291-55627310 None:intergenic 35.0%
CCGTAAACTATCTCTAGATT+AGG + chr8_1:55627295-55627314 Msa1202110:CDS 35.0%
CACCAAAGAATCAAAACCAA+CGG + chr8_1:55625280-55625299 Msa1202110:CDS 35.0%
!!! TTCCGTTGGTTTTGATTCTT+TGG - chr8_1:55625285-55625304 None:intergenic 35.0%
TTCATGGTTTCCCAGAAATA+TGG + chr8_1:55625353-55625372 Msa1202110:CDS 35.0%
TCCCAGAAATATGGTATTCT+TGG + chr8_1:55625362-55625381 Msa1202110:CDS 35.0%
GCCAAGAATACCATATTTCT+GGG - chr8_1:55625366-55625385 None:intergenic 35.0%
! CAACAGCATGATAACCATTT+TGG - chr8_1:55625411-55625430 None:intergenic 35.0%
! GTTGAAGAGTGTATGAATTG+GGG - chr8_1:55625477-55625496 None:intergenic 35.0%
!! CATATTGTTGGTGACCTTAT+TGG + chr8_1:55625496-55625515 Msa1202110:CDS 35.0%
TCAAGTCACAGTCAAAATTG+TGG + chr8_1:55625716-55625735 Msa1202110:intron 35.0%
CCTTAATCTCATGCAAATTG+TGG - chr8_1:55625812-55625831 None:intergenic 35.0%
CCACAATTTGCATGAGATTA+AGG + chr8_1:55625809-55625828 Msa1202110:intron 35.0%
!!! AATCGTTTGTGTTTTTGGGA+TGG - chr8_1:55625986-55626005 None:intergenic 35.0%
ACAAACGATTTACCAGAGTT+CGG + chr8_1:55625996-55626015 Msa1202110:intron 35.0%
TTCACTCATAACTCACAAGT+GGG - chr8_1:55626148-55626167 None:intergenic 35.0%
ATTCACTCATAACTCACAAG+TGG - chr8_1:55626149-55626168 None:intergenic 35.0%
TCTCTATCCCATTTGAATGA+AGG + chr8_1:55626457-55626476 Msa1202110:intron 35.0%
! TGAATGAAGGCATATGTAGT+AGG + chr8_1:55626470-55626489 Msa1202110:intron 35.0%
ATATGTAGTAGGATCTGACT+GGG + chr8_1:55626481-55626500 Msa1202110:CDS 35.0%
TATCAGGCCTAAATAGACTT+AGG - chr8_1:55626526-55626545 None:intergenic 35.0%
! GTTTTATCTGTTGGAGATCT+TGG - chr8_1:55626587-55626606 None:intergenic 35.0%
AAGGGTAATCTACCTGAAAT+TGG - chr8_1:55626655-55626674 None:intergenic 35.0%
! TCAGGTAGATTACCCTTTTA+TGG + chr8_1:55626658-55626677 Msa1202110:intron 35.0%
TTTCATTGAAATTGCGTGGT+TGG + chr8_1:55626723-55626742 Msa1202110:intron 35.0%
AAAAACCATGAGTTCTTCCT+CGG - chr8_1:55626909-55626928 None:intergenic 35.0%
ATTCAATTACTATCGCGCAA+TGG + chr8_1:55626964-55626983 Msa1202110:CDS 35.0%
GTTCCAACTAAGTTTATTGC+CGG + chr8_1:55627110-55627129 Msa1202110:CDS 35.0%
AAAACCAACATCTTTGTCTC+CGG - chr8_1:55627132-55627151 None:intergenic 35.0%
!!! GATGTTGGTTTTCAAAATGG+GGG + chr8_1:55627140-55627159 Msa1202110:CDS 35.0%
! GGTACAAAAGATTTTGTGGA+AGG + chr8_1:55627161-55627180 Msa1202110:CDS 35.0%
AGTATAACCACTTCAAGGTT+AGG - chr8_1:55627209-55627228 None:intergenic 35.0%
CATCTAGTATAACCACTTCA+AGG - chr8_1:55627214-55627233 None:intergenic 35.0%
CTTGAAGTGGTTATACTAGA+TGG + chr8_1:55627212-55627231 Msa1202110:CDS 35.0%
AGAGAAAGCTCAACAAGTTT+CGG + chr8_1:55627253-55627272 Msa1202110:CDS 35.0%
ATAGTTTACGGATGAAGGAA+AGG - chr8_1:55627286-55627305 None:intergenic 35.0%
TAGAGATAGTTTACGGATGA+AGG - chr8_1:55627291-55627310 None:intergenic 35.0%
CCGTAAACTATCTCTAGATT+AGG + chr8_1:55627295-55627314 Msa1202110:CDS 35.0%
CACTTCAGTCATGAAGAACA+TGG - chr8_1:55625257-55625276 None:intergenic 40.0%
CGCCAAGAATACCATATTTC+TGG - chr8_1:55625367-55625386 None:intergenic 40.0%
TCACCATATCCTCTTAGATC+AGG - chr8_1:55625436-55625455 None:intergenic 40.0%
!! ATTGGGGTTGATAGGAGAAT+CGG - chr8_1:55625461-55625480 None:intergenic 40.0%
! GTGTATGAATTGGGGTTGAT+AGG - chr8_1:55625469-55625488 None:intergenic 40.0%
TTAAGGATATGCCGTAGATG+TGG + chr8_1:55625826-55625845 Msa1202110:intron 40.0%
CCGAATTTACTCCACATCTA+CGG - chr8_1:55625840-55625859 None:intergenic 40.0%
CCGTAGATGTGGAGTAAATT+CGG + chr8_1:55625837-55625856 Msa1202110:intron 40.0%
TTATATCTGAGCGAGTCTCA+AGG + chr8_1:55625904-55625923 Msa1202110:intron 40.0%
TATATCTGAGCGAGTCTCAA+GGG + chr8_1:55625905-55625924 Msa1202110:intron 40.0%
CAACAAACTTACCGGTACAA+TGG - chr8_1:55626090-55626109 None:intergenic 40.0%
! TGAAAGCGCAACAAACTTAC+CGG - chr8_1:55626098-55626117 None:intergenic 40.0%
GGCAAAATTCATGTCCAACA+TGG + chr8_1:55626224-55626243 Msa1202110:intron 40.0%
GCATCATGAAAATGCCATGT+TGG - chr8_1:55626241-55626260 None:intergenic 40.0%
CATATGTAGTAGGATCTGAC+TGG + chr8_1:55626480-55626499 Msa1202110:CDS 40.0%
TATGTAGTAGGATCTGACTG+GGG + chr8_1:55626482-55626501 Msa1202110:CDS 40.0%
GATGGCACCTAAGTCTATTT+AGG + chr8_1:55626516-55626535 Msa1202110:CDS 40.0%
ATTTAGGCCTGATAGAGTGA+AGG + chr8_1:55626532-55626551 Msa1202110:CDS 40.0%
TTTAGGCCTGATAGAGTGAA+GGG + chr8_1:55626533-55626552 Msa1202110:CDS 40.0%
GTTGGAGATCTTGGAAAGTA+AGG - chr8_1:55626578-55626597 None:intergenic 40.0%
AGCTCATGTTTGCCAATTTC+AGG + chr8_1:55626640-55626659 Msa1202110:CDS 40.0%
! CATTTTATAACAGCTCCTCC+TGG + chr8_1:55626830-55626849 Msa1202110:CDS 40.0%
AAATCAACAATCTCCATGCC+AGG - chr8_1:55626851-55626870 None:intergenic 40.0%
TGATTTCTTGCCAACTCCTT+CGG + chr8_1:55626865-55626884 Msa1202110:CDS 40.0%
GCGATAGTAATTGAATGCAC+CGG - chr8_1:55626960-55626979 None:intergenic 40.0%
ACTCAATGGTTACAGAAGCT+GGG + chr8_1:55627052-55627071 Msa1202110:intron 40.0%
GTTATCTTTGATCCTTGCCA+TGG - chr8_1:55627089-55627108 None:intergenic 40.0%
TCTCCGGCAATAAACTTAGT+TGG - chr8_1:55627116-55627135 None:intergenic 40.0%
!! TGGGGGTACAAAAGATTTTG+TGG + chr8_1:55627157-55627176 Msa1202110:CDS 40.0%
TCTTGTTCCTAACCTTGAAG+TGG + chr8_1:55627199-55627218 Msa1202110:CDS 40.0%
CACTTCAGTCATGAAGAACA+TGG - chr8_1:55625257-55625276 None:intergenic 40.0%
CGCCAAGAATACCATATTTC+TGG - chr8_1:55625367-55625386 None:intergenic 40.0%
TCACCATATCCTCTTAGATC+AGG - chr8_1:55625436-55625455 None:intergenic 40.0%
!! ATTGGGGTTGATAGGAGAAT+CGG - chr8_1:55625461-55625480 None:intergenic 40.0%
! GTGTATGAATTGGGGTTGAT+AGG - chr8_1:55625469-55625488 None:intergenic 40.0%
TTAAGGATATGCCGTAGATG+TGG + chr8_1:55625826-55625845 Msa1202110:intron 40.0%
CCGAATTTACTCCACATCTA+CGG - chr8_1:55625840-55625859 None:intergenic 40.0%
CCGTAGATGTGGAGTAAATT+CGG + chr8_1:55625837-55625856 Msa1202110:intron 40.0%
TTATATCTGAGCGAGTCTCA+AGG + chr8_1:55625904-55625923 Msa1202110:intron 40.0%
TATATCTGAGCGAGTCTCAA+GGG + chr8_1:55625905-55625924 Msa1202110:intron 40.0%
CAACAAACTTACCGGTACAA+TGG - chr8_1:55626090-55626109 None:intergenic 40.0%
! TGAAAGCGCAACAAACTTAC+CGG - chr8_1:55626098-55626117 None:intergenic 40.0%
GGCAAAATTCATGTCCAACA+TGG + chr8_1:55626224-55626243 Msa1202110:intron 40.0%
GCATCATGAAAATGCCATGT+TGG - chr8_1:55626241-55626260 None:intergenic 40.0%
CATATGTAGTAGGATCTGAC+TGG + chr8_1:55626480-55626499 Msa1202110:CDS 40.0%
TATGTAGTAGGATCTGACTG+GGG + chr8_1:55626482-55626501 Msa1202110:CDS 40.0%
GATGGCACCTAAGTCTATTT+AGG + chr8_1:55626516-55626535 Msa1202110:CDS 40.0%
ATTTAGGCCTGATAGAGTGA+AGG + chr8_1:55626532-55626551 Msa1202110:CDS 40.0%
TTTAGGCCTGATAGAGTGAA+GGG + chr8_1:55626533-55626552 Msa1202110:CDS 40.0%
GTTGGAGATCTTGGAAAGTA+AGG - chr8_1:55626578-55626597 None:intergenic 40.0%
AGCTCATGTTTGCCAATTTC+AGG + chr8_1:55626640-55626659 Msa1202110:CDS 40.0%
! CATTTTATAACAGCTCCTCC+TGG + chr8_1:55626830-55626849 Msa1202110:CDS 40.0%
AAATCAACAATCTCCATGCC+AGG - chr8_1:55626851-55626870 None:intergenic 40.0%
TGATTTCTTGCCAACTCCTT+CGG + chr8_1:55626865-55626884 Msa1202110:CDS 40.0%
GCGATAGTAATTGAATGCAC+CGG - chr8_1:55626960-55626979 None:intergenic 40.0%
ACTCAATGGTTACAGAAGCT+GGG + chr8_1:55627052-55627071 Msa1202110:intron 40.0%
GTTATCTTTGATCCTTGCCA+TGG - chr8_1:55627089-55627108 None:intergenic 40.0%
TCTCCGGCAATAAACTTAGT+TGG - chr8_1:55627116-55627135 None:intergenic 40.0%
!! TGGGGGTACAAAAGATTTTG+TGG + chr8_1:55627157-55627176 Msa1202110:CDS 40.0%
TCTTGTTCCTAACCTTGAAG+TGG + chr8_1:55627199-55627218 Msa1202110:CDS 40.0%
CATGTAGCAGAACAAGGAAC+AGG + chr8_1:55625313-55625332 Msa1202110:CDS 45.0%
CCATGAAGCAGTAGAACTAG+TGG - chr8_1:55625340-55625359 None:intergenic 45.0%
!! CCACTAGTTCTACTGCTTCA+TGG + chr8_1:55625337-55625356 Msa1202110:CDS 45.0%
TTTGGGCCAAGTAGTTGAGT+TGG - chr8_1:55625393-55625412 None:intergenic 45.0%
CTCAACTACTTGGCCCAAAA+TGG + chr8_1:55625394-55625413 Msa1202110:CDS 45.0%
GCACCTGATCTAAGAGGATA+TGG + chr8_1:55625430-55625449 Msa1202110:CDS 45.0%
TACCAGAGTTCGGTCAATCA+TGG + chr8_1:55626006-55626025 Msa1202110:intron 45.0%
CTCATAACTCACAAGTGGGT+AGG - chr8_1:55626144-55626163 None:intergenic 45.0%
! GGGGAACCTTTTCATGTTGT+AGG + chr8_1:55626203-55626222 Msa1202110:intron 45.0%
TTAGGCCTGATAGAGTGAAG+GGG + chr8_1:55626534-55626553 Msa1202110:CDS 45.0%
ACAAACCCCTTCACTCTATC+AGG - chr8_1:55626542-55626561 None:intergenic 45.0%
ATTGAAATTGCGTGGTTGGC+AGG + chr8_1:55626727-55626746 Msa1202110:intron 45.0%
GATAACCGAGGAAGAACTCA+TGG + chr8_1:55626901-55626920 Msa1202110:CDS 45.0%
GCAGACAAATTCCAAGAGTC+TGG + chr8_1:55626929-55626948 Msa1202110:CDS 45.0%
! TTCCAAGAGTCTGGTTTCAC+CGG + chr8_1:55626938-55626957 Msa1202110:CDS 45.0%
CACTCAATGGTTACAGAAGC+TGG + chr8_1:55627051-55627070 Msa1202110:intron 45.0%
ATTGCCGGAGACAAAGATGT+TGG + chr8_1:55627125-55627144 Msa1202110:CDS 45.0%
CAAGGTTAGGAACAAGACTC+TGG - chr8_1:55627196-55627215 None:intergenic 45.0%
GAAAGCTCAACAAGTTTCGG+AGG + chr8_1:55627256-55627275 Msa1202110:CDS 45.0%
CATGTAGCAGAACAAGGAAC+AGG + chr8_1:55625313-55625332 Msa1202110:CDS 45.0%
CCATGAAGCAGTAGAACTAG+TGG - chr8_1:55625340-55625359 None:intergenic 45.0%
!! CCACTAGTTCTACTGCTTCA+TGG + chr8_1:55625337-55625356 Msa1202110:CDS 45.0%
TTTGGGCCAAGTAGTTGAGT+TGG - chr8_1:55625393-55625412 None:intergenic 45.0%
CTCAACTACTTGGCCCAAAA+TGG + chr8_1:55625394-55625413 Msa1202110:CDS 45.0%
GCACCTGATCTAAGAGGATA+TGG + chr8_1:55625430-55625449 Msa1202110:CDS 45.0%
TACCAGAGTTCGGTCAATCA+TGG + chr8_1:55626006-55626025 Msa1202110:intron 45.0%
CTCATAACTCACAAGTGGGT+AGG - chr8_1:55626144-55626163 None:intergenic 45.0%
! GGGGAACCTTTTCATGTTGT+AGG + chr8_1:55626203-55626222 Msa1202110:intron 45.0%
TTAGGCCTGATAGAGTGAAG+GGG + chr8_1:55626534-55626553 Msa1202110:CDS 45.0%
ACAAACCCCTTCACTCTATC+AGG - chr8_1:55626542-55626561 None:intergenic 45.0%
ATTGAAATTGCGTGGTTGGC+AGG + chr8_1:55626727-55626746 Msa1202110:intron 45.0%
GATAACCGAGGAAGAACTCA+TGG + chr8_1:55626901-55626920 Msa1202110:CDS 45.0%
GCAGACAAATTCCAAGAGTC+TGG + chr8_1:55626929-55626948 Msa1202110:CDS 45.0%
! TTCCAAGAGTCTGGTTTCAC+CGG + chr8_1:55626938-55626957 Msa1202110:CDS 45.0%
CACTCAATGGTTACAGAAGC+TGG + chr8_1:55627051-55627070 Msa1202110:intron 45.0%
ATTGCCGGAGACAAAGATGT+TGG + chr8_1:55627125-55627144 Msa1202110:CDS 45.0%
CAAGGTTAGGAACAAGACTC+TGG - chr8_1:55627196-55627215 None:intergenic 45.0%
GAAAGCTCAACAAGTTTCGG+AGG + chr8_1:55627256-55627275 Msa1202110:CDS 45.0%
GCTGTTGCACCTGATCTAAG+AGG + chr8_1:55625424-55625443 Msa1202110:CDS 50.0%
ACGTGGAGGCTCAAGAGAAT+TGG - chr8_1:55625565-55625584 None:intergenic 50.0%
AGCCATGATTGACCGAACTC+TGG - chr8_1:55626011-55626030 None:intergenic 50.0%
TCTGACTGGGGAGCAAACAT+TGG + chr8_1:55626494-55626513 Msa1202110:CDS 50.0%
ACTGGGGAGCAAACATTGGA+TGG + chr8_1:55626498-55626517 Msa1202110:CDS 50.0%
TATAACAGCTCCTCCTGGCA+TGG + chr8_1:55626835-55626854 Msa1202110:CDS 50.0%
TCAACAATCTCCATGCCAGG+AGG - chr8_1:55626848-55626867 None:intergenic 50.0%
TCTTCCTCGGTTATCCACGA+CGG - chr8_1:55626896-55626915 None:intergenic 50.0%
GAACTTCTAGCACCATGGCA+AGG + chr8_1:55627074-55627093 Msa1202110:CDS 50.0%
TGCGCCACAAGCTAGACAAA+GGG - chr8_1:55627361-55627380 None:intergenic 50.0%
GCTGTTGCACCTGATCTAAG+AGG + chr8_1:55625424-55625443 Msa1202110:CDS 50.0%
ACGTGGAGGCTCAAGAGAAT+TGG - chr8_1:55625565-55625584 None:intergenic 50.0%
AGCCATGATTGACCGAACTC+TGG - chr8_1:55626011-55626030 None:intergenic 50.0%
TCTGACTGGGGAGCAAACAT+TGG + chr8_1:55626494-55626513 Msa1202110:CDS 50.0%
ACTGGGGAGCAAACATTGGA+TGG + chr8_1:55626498-55626517 Msa1202110:CDS 50.0%
TATAACAGCTCCTCCTGGCA+TGG + chr8_1:55626835-55626854 Msa1202110:CDS 50.0%
TCAACAATCTCCATGCCAGG+AGG - chr8_1:55626848-55626867 None:intergenic 50.0%
TCTTCCTCGGTTATCCACGA+CGG - chr8_1:55626896-55626915 None:intergenic 50.0%
GAACTTCTAGCACCATGGCA+AGG + chr8_1:55627074-55627093 Msa1202110:CDS 50.0%
TGCGCCACAAGCTAGACAAA+GGG - chr8_1:55627361-55627380 None:intergenic 50.0%
GCGCCACCAACTCAACTACT+TGG + chr8_1:55625384-55625403 Msa1202110:CDS 55.0%
!! GGGCCAAGTAGTTGAGTTGG+TGG - chr8_1:55625390-55625409 None:intergenic 55.0%
AAAGCTCTCTCTGCACGACC+TGG - chr8_1:55626755-55626774 None:intergenic 55.0%
GACGGCAAAACCGAAGGAGT+TGG - chr8_1:55626878-55626897 None:intergenic 55.0%
ATCCACGACGGCAAAACCGA+AGG - chr8_1:55626884-55626903 None:intergenic 55.0%
TTTGCCGTCGTGGATAACCG+AGG + chr8_1:55626889-55626908 Msa1202110:CDS 55.0%
CACCGGTGAAACCAGACTCT+TGG - chr8_1:55626943-55626962 None:intergenic 55.0%
GCTGGGAACTTCTAGCACCA+TGG + chr8_1:55627069-55627088 Msa1202110:CDS 55.0%
CCACAAGCTAGACAAAGGGG+TGG - chr8_1:55627357-55627376 None:intergenic 55.0%
! CCACCCCTTTGTCTAGCTTG+TGG + chr8_1:55627354-55627373 Msa1202110:three_prime_UTR 55.0%
GCGCCACAAGCTAGACAAAG+GGG - chr8_1:55627360-55627379 None:intergenic 55.0%
GTGCGCCACAAGCTAGACAA+AGG - chr8_1:55627362-55627381 None:intergenic 55.0%
GCGCCACCAACTCAACTACT+TGG + chr8_1:55625384-55625403 Msa1202110:CDS 55.0%
!! GGGCCAAGTAGTTGAGTTGG+TGG - chr8_1:55625390-55625409 None:intergenic 55.0%
AAAGCTCTCTCTGCACGACC+TGG - chr8_1:55626755-55626774 None:intergenic 55.0%
GACGGCAAAACCGAAGGAGT+TGG - chr8_1:55626878-55626897 None:intergenic 55.0%
ATCCACGACGGCAAAACCGA+AGG - chr8_1:55626884-55626903 None:intergenic 55.0%
TTTGCCGTCGTGGATAACCG+AGG + chr8_1:55626889-55626908 Msa1202110:CDS 55.0%
CACCGGTGAAACCAGACTCT+TGG - chr8_1:55626943-55626962 None:intergenic 55.0%
GCTGGGAACTTCTAGCACCA+TGG + chr8_1:55627069-55627088 Msa1202110:CDS 55.0%
CCACAAGCTAGACAAAGGGG+TGG - chr8_1:55627357-55627376 None:intergenic 55.0%
! CCACCCCTTTGTCTAGCTTG+TGG + chr8_1:55627354-55627373 Msa1202110:three_prime_UTR 55.0%
GCGCCACAAGCTAGACAAAG+GGG - chr8_1:55627360-55627379 None:intergenic 55.0%
GTGCGCCACAAGCTAGACAA+AGG - chr8_1:55627362-55627381 None:intergenic 55.0%
AGGCGCTCGAGCATATCGAG+TGG - chr8_1:55626124-55626143 None:intergenic 60.0%
TTGCGTGGTTGGCAGGAACC+AGG + chr8_1:55626734-55626753 Msa1202110:intron 60.0%
! CTCCTTCGGTTTTGCCGTCG+TGG + chr8_1:55626879-55626898 Msa1202110:CDS 60.0%
AGGCGCTCGAGCATATCGAG+TGG - chr8_1:55626124-55626143 None:intergenic 60.0%
TTGCGTGGTTGGCAGGAACC+AGG + chr8_1:55626734-55626753 Msa1202110:intron 60.0%
! CTCCTTCGGTTTTGCCGTCG+TGG + chr8_1:55626879-55626898 Msa1202110:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 55625240 55627475 55625240 ID=Msa1202110;Name=Msa1202110
chr8_1 mRNA 55625240 55627475 55625240 ID=Msa1202110-mRNA-1;Parent=Msa1202110;Name=Msa1202110-mRNA-1;_AED=0.11;_eAED=0.11;_QI=16|1|1|1|1|1|4|159|321
chr8_1 exon 55625240 55625546 55625240 ID=Msa1202110-mRNA-1:exon:18018;Parent=Msa1202110-mRNA-1
chr8_1 exon 55626479 55626661 55626479 ID=Msa1202110-mRNA-1:exon:18019;Parent=Msa1202110-mRNA-1
chr8_1 exon 55626749 55626990 55626749 ID=Msa1202110-mRNA-1:exon:18020;Parent=Msa1202110-mRNA-1
chr8_1 exon 55627067 55627475 55627067 ID=Msa1202110-mRNA-1:exon:18021;Parent=Msa1202110-mRNA-1
chr8_1 five_prime_UTR 55625240 55625255 55625240 ID=Msa1202110-mRNA-1:five_prime_utr;Parent=Msa1202110-mRNA-1
chr8_1 CDS 55625256 55625546 55625256 ID=Msa1202110-mRNA-1:cds;Parent=Msa1202110-mRNA-1
chr8_1 CDS 55626479 55626661 55626479 ID=Msa1202110-mRNA-1:cds;Parent=Msa1202110-mRNA-1
chr8_1 CDS 55626749 55626990 55626749 ID=Msa1202110-mRNA-1:cds;Parent=Msa1202110-mRNA-1
chr8_1 CDS 55627067 55627316 55627067 ID=Msa1202110-mRNA-1:cds;Parent=Msa1202110-mRNA-1
chr8_1 three_prime_UTR 55627317 55627475 55627317 ID=Msa1202110-mRNA-1:three_prime_utr;Parent=Msa1202110-mRNA-1
Gene Sequence

>Msa1202110

ATGTTCTTCATGACTGAAGTGAATCACCAAAGAATCAAAACCAACGGAATAAATATACATGTAGCAGAACAAGGAACAGGACCACTAGTTCTACTGCTTCATGGTTTCCCAGAAATATGGTATTCTTGGCGCCACCAACTCAACTACTTGGCCCAAAATGGTTATCATGCTGTTGCACCTGATCTAAGAGGATATGGTGACTCCGATTCTCCTATCAACCCCAATTCATACACTCTTCAACATATTGTTGGTGACCTTATTGGTCTTCTTGATCATTTTGGTGAACAAAAGGCATATGTAGTAGGATCTGACTGGGGAGCAAACATTGGATGGCACCTAAGTCTATTTAGGCCTGATAGAGTGAAGGGGTTTGTTGCTCTATGTGTTCCTTACTTTCCAAGATCTCCAACAGATAAAACTGTTGAAACTATAAGAAAAGTATACGGAGATGGAGCTCATGTTTGCCAATTTCAGGAACCAGGTCGTGCAGAGAGAGCTTTTGCTAGATATGATTGTTTGACAGTGATGAAGAAGTTTTTGCTGATTACATGGACACATTTTATAACAGCTCCTCCTGGCATGGAGATTGTTGATTTCTTGCCAACTCCTTCGGTTTTGCCGTCGTGGATAACCGAGGAAGAACTCATGGTTTTTGCAGACAAATTCCAAGAGTCTGGTTTCACCGGTGCATTCAATTACTATCGCGCAATGGACCTAAGCTGGGAACTTCTAGCACCATGGCAAGGATCAAAGATAACAGTTCCAACTAAGTTTATTGCCGGAGACAAAGATGTTGGTTTTCAAAATGGGGGTACAAAAGATTTTGTGGAAGGTGATATTTTCCAGAGTCTTGTTCCTAACCTTGAAGTGGTTATACTAGATGGTCACCACTATATACATCAAGAGAAAGCTCAACAAGTTTCGGAGGAAATCCTTTCCTTCATCCGTAAACTATCTCTAGATTAG

Protein sequence

>Msa1202110

MFFMTEVNHQRIKTNGINIHVAEQGTGPLVLLLHGFPEIWYSWRHQLNYLAQNGYHAVAPDLRGYGDSDSPINPNSYTLQHIVGDLIGLLDHFGEQKAYVVGSDWGANIGWHLSLFRPDRVKGFVALCVPYFPRSPTDKTVETIRKVYGDGAHVCQFQEPGRAERAFARYDCLTVMKKFLLITWTHFITAPPGMEIVDFLPTPSVLPSWITEEELMVFADKFQESGFTGAFNYYRAMDLSWELLAPWQGSKITVPTKFIAGDKDVGFQNGGTKDFVEGDIFQSLVPNLEVVILDGHHYIHQEKAQQVSEEILSFIRKLSLD*