Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293940 | XP_003629098.2 | 89.119 | 386 | 22 | 2 | 1 | 366 | 203 | 588 | 0.0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293940 | sp|O22757|MLO8_ARATH | 57.215 | 395 | 129 | 8 | 1 | 365 | 206 | 590 | 1.63e-143 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293940 | A0A396GSS4 | 89.119 | 386 | 22 | 2 | 1 | 366 | 203 | 588 | 0.0 | 707 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0708310 | Msa1293940 | 0.800548 | 1.368942e-48 | -8.615850e-47 |
| Msa0187830 | Msa1293940 | 0.801678 | 8.038162e-49 | -8.615850e-47 |
| Msa0229590 | Msa1293940 | 0.826488 | 2.639013e-54 | -8.615850e-47 |
| Msa1293940 | Msa1408180 | 0.819671 | 1.027606e-52 | -8.615850e-47 |
| Msa1293940 | Msa1448980 | 0.822405 | 2.411158e-53 | -8.615850e-47 |
| Msa1293940 | Msa1458580 | 0.807521 | 4.854431e-50 | -8.615850e-47 |
| Msa0466010 | Msa1293940 | 0.800986 | 1.114267e-48 | -8.615850e-47 |
| Msa1200710 | Msa1293940 | 0.870422 | 1.476938e-66 | -8.615850e-47 |
| Msa0580920 | Msa1293940 | 0.825423 | 4.726243e-54 | -8.615850e-47 |
| Msa0957830 | Msa1293940 | 0.818331 | 2.072764e-52 | -8.615850e-47 |
| Msa0972770 | Msa1293940 | 0.807166 | 5.771051e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293940 | MtrunA17_Chr8g0370181 | 89.119 | 386 | 22 | 2 | 1 | 366 | 203 | 588 | 0.0 | 707 |
| Msa1293940 | MtrunA17_Chr5g0407381 | 67.956 | 362 | 82 | 8 | 1 | 338 | 196 | 547 | 5.21e-167 | 478 |
| Msa1293940 | MtrunA17_Chr3g0144201 | 53.776 | 331 | 101 | 4 | 1 | 280 | 201 | 530 | 2.15e-108 | 328 |
| Msa1293940 | MtrunA17_Chr3g0144171 | 44.253 | 348 | 164 | 6 | 1 | 322 | 180 | 523 | 1.63e-98 | 302 |
| Msa1293940 | MtrunA17_Chr6g0462051 | 44.729 | 351 | 156 | 8 | 1 | 318 | 182 | 527 | 7.04e-97 | 299 |
| Msa1293940 | MtrunA17_Chr2g0326301 | 44.000 | 325 | 151 | 6 | 1 | 303 | 186 | 501 | 2.04e-90 | 283 |
| Msa1293940 | MtrunA17_Chr8g0337941 | 43.571 | 280 | 134 | 4 | 1 | 256 | 194 | 473 | 5.63e-69 | 225 |
| Msa1293940 | MtrunA17_Chr8g0337931 | 39.339 | 333 | 166 | 7 | 1 | 303 | 180 | 506 | 1.23e-67 | 221 |
| Msa1293940 | MtrunA17_Chr3g0145831 | 38.820 | 322 | 169 | 6 | 1 | 295 | 187 | 507 | 1.24e-64 | 214 |
| Msa1293940 | MtrunA17_Chr4g0040611 | 33.867 | 375 | 211 | 8 | 1 | 347 | 159 | 524 | 1.41e-63 | 212 |
| Msa1293940 | MtrunA17_Chr2g0317801 | 36.755 | 302 | 155 | 9 | 1 | 276 | 179 | 470 | 6.49e-53 | 183 |
| Msa1293940 | MtrunA17_Chr2g0277471 | 36.290 | 248 | 135 | 5 | 30 | 256 | 206 | 451 | 6.51e-45 | 162 |
| Msa1293940 | MtrunA17_Chr2g0291441 | 37.453 | 267 | 132 | 5 | 1 | 242 | 172 | 428 | 1.43e-42 | 154 |
| Msa1293940 | MtrunA17_Chr5g0405641 | 33.690 | 187 | 115 | 4 | 1 | 180 | 178 | 362 | 5.47e-28 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293940 | AT2G17480.1 | 57.215 | 395 | 129 | 8 | 1 | 365 | 206 | 590 | 1.65e-144 | 422 |
| Msa1293940 | AT5G65970.1 | 61.176 | 340 | 107 | 4 | 1 | 315 | 188 | 527 | 5.99e-137 | 402 |
| Msa1293940 | AT2G17430.1 | 58.559 | 333 | 114 | 3 | 1 | 309 | 190 | 522 | 1.42e-136 | 400 |
| Msa1293940 | AT2G33670.1 | 60.145 | 276 | 89 | 3 | 1 | 256 | 176 | 450 | 3.63e-115 | 344 |
| Msa1293940 | AT1G42560.1 | 58.123 | 277 | 95 | 3 | 1 | 257 | 183 | 458 | 1.79e-112 | 336 |
| Msa1293940 | AT5G65970.2 | 73.481 | 181 | 48 | 0 | 1 | 181 | 188 | 368 | 2.88e-99 | 303 |
| Msa1293940 | AT1G61560.2 | 44.892 | 323 | 154 | 4 | 1 | 301 | 124 | 444 | 6.69e-94 | 290 |
| Msa1293940 | AT1G61560.3 | 44.892 | 323 | 154 | 4 | 1 | 301 | 124 | 444 | 6.69e-94 | 290 |
| Msa1293940 | AT2G39200.1 | 43.620 | 337 | 159 | 5 | 1 | 315 | 180 | 507 | 1.56e-93 | 291 |
| Msa1293940 | AT1G61560.1 | 44.753 | 324 | 155 | 4 | 1 | 302 | 186 | 507 | 1.66e-93 | 291 |
| Msa1293940 | AT1G11310.3 | 47.751 | 289 | 127 | 5 | 1 | 265 | 127 | 415 | 2.12e-89 | 278 |
| Msa1293940 | AT3G45290.1 | 42.759 | 290 | 140 | 3 | 1 | 270 | 177 | 460 | 5.86e-89 | 277 |
| Msa1293940 | AT1G11310.1 | 47.751 | 289 | 127 | 5 | 1 | 265 | 189 | 477 | 9.15e-89 | 278 |
| Msa1293940 | AT1G61560.4 | 43.692 | 325 | 157 | 7 | 1 | 302 | 186 | 507 | 1.27e-87 | 276 |
| Msa1293940 | AT1G42560.2 | 61.140 | 193 | 74 | 1 | 1 | 193 | 183 | 374 | 3.96e-84 | 260 |
| Msa1293940 | AT1G61560.10 | 49.213 | 254 | 107 | 3 | 1 | 232 | 186 | 439 | 8.70e-82 | 257 |
| Msa1293940 | AT1G61560.7 | 48.696 | 230 | 104 | 2 | 1 | 216 | 186 | 415 | 7.16e-75 | 238 |
| Msa1293940 | AT1G61560.9 | 48.696 | 230 | 104 | 2 | 1 | 216 | 186 | 415 | 7.16e-75 | 238 |
| Msa1293940 | AT1G61560.6 | 52.000 | 200 | 94 | 1 | 1 | 198 | 186 | 385 | 5.37e-71 | 228 |
| Msa1293940 | AT1G61560.8 | 52.000 | 200 | 94 | 1 | 1 | 198 | 186 | 385 | 5.37e-71 | 228 |
| Msa1293940 | AT1G61560.5 | 52.000 | 200 | 94 | 1 | 1 | 198 | 186 | 385 | 5.37e-71 | 228 |
| Msa1293940 | AT1G11310.2 | 46.522 | 230 | 109 | 2 | 1 | 216 | 189 | 418 | 1.52e-69 | 224 |
| Msa1293940 | AT4G02600.2 | 39.583 | 288 | 151 | 4 | 1 | 265 | 185 | 472 | 2.11e-65 | 216 |
| Msa1293940 | AT4G02600.1 | 39.583 | 288 | 151 | 4 | 1 | 265 | 185 | 472 | 2.11e-65 | 216 |
| Msa1293940 | AT2G44110.1 | 38.671 | 331 | 170 | 8 | 1 | 308 | 172 | 492 | 9.39e-64 | 211 |
| Msa1293940 | AT2G44110.2 | 37.764 | 331 | 174 | 8 | 1 | 308 | 172 | 493 | 1.98e-62 | 207 |
| Msa1293940 | AT5G53760.2 | 35.174 | 344 | 194 | 9 | 1 | 320 | 187 | 525 | 2.54e-56 | 193 |
| Msa1293940 | AT5G53760.1 | 35.174 | 344 | 194 | 9 | 1 | 320 | 187 | 525 | 2.54e-56 | 193 |
| Msa1293940 | AT1G26700.1 | 35.473 | 296 | 165 | 7 | 1 | 272 | 182 | 475 | 3.68e-50 | 176 |
| Msa1293940 | AT1G26700.2 | 35.473 | 296 | 165 | 7 | 1 | 272 | 182 | 475 | 3.68e-50 | 176 |
| Msa1293940 | AT4G24250.1 | 37.063 | 286 | 146 | 7 | 1 | 256 | 170 | 451 | 6.16e-47 | 166 |
| Msa1293940 | AT1G11000.1 | 29.855 | 345 | 205 | 6 | 1 | 309 | 175 | 518 | 1.04e-45 | 165 |
| Msa1293940 | AT1G11000.3 | 29.855 | 345 | 205 | 6 | 1 | 309 | 175 | 518 | 1.04e-45 | 165 |
| Msa1293940 | AT1G11000.2 | 35.678 | 199 | 126 | 2 | 1 | 198 | 175 | 372 | 1.67e-36 | 137 |
| Msa1293940 | AT4G24250.2 | 39.320 | 206 | 111 | 5 | 1 | 196 | 170 | 371 | 4.30e-34 | 130 |
Find 88 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTAATCCGCGCTTCTTTC+CGG | 0.150379 | 8_3:+51537296 | None:intergenic |
| TTTGCTTACCATCAATATTT+AGG | 0.200097 | 8_3:+51539792 | None:intergenic |
| CAGGATGGCATGCTATGTTT+TGG | 0.215943 | 8_3:-51539686 | Msa1293940:CDS |
| CATAATTTGCAGTATTCTTT+CGG | 0.257506 | 8_3:-51538603 | Msa1293940:intron |
| TAATTGGTTGCAGATGATTT+TGG | 0.263557 | 8_3:-51539257 | Msa1293940:intron |
| GCAATAGCCAAAGTAGCTTT+AGG | 0.272741 | 8_3:-51538546 | Msa1293940:CDS |
| ATAATTTGCAGTATTCTTTC+GGG | 0.277858 | 8_3:-51538602 | Msa1293940:intron |
| GAAAGAAGCGCGGATTAAAT+AGG | 0.298170 | 8_3:-51537293 | Msa1293940:exon |
| ACTTACAATGACAGGAATTA+AGG | 0.307925 | 8_3:+51539659 | None:intergenic |
| TGAAAGTTAAATTTACTTCC+TGG | 0.310672 | 8_3:+51540017 | None:intergenic |
| TTCCTTGTCCTAAATATTGA+TGG | 0.327507 | 8_3:-51539800 | Msa1293940:intron |
| CAATAGCCAAAGTAGCTTTA+GGG | 0.345418 | 8_3:-51538545 | Msa1293940:intron |
| GCTTCTTTAGACAGTTCTAT+AGG | 0.358464 | 8_3:-51540173 | Msa1293940:CDS |
| ATACCTGGAACAAGGCAAAA+TGG | 0.373098 | 8_3:+51539089 | None:intergenic |
| TTAGACAACATGCCACTTGT+TGG | 0.375933 | 8_3:-51540330 | Msa1293940:CDS |
| ATCGGTGGTGCTTCCGTCCC+TGG | 0.383125 | 8_3:+51537574 | None:intergenic |
| TAAATCCGTTCCGCAGAGTC+AGG | 0.397778 | 8_3:+51540130 | None:intergenic |
| CAAGGGATTCCCCTTGTTCA+AGG | 0.401633 | 8_3:-51539163 | Msa1293940:CDS |
| AACTGTTTGTTGTTGTTCAA+TGG | 0.409950 | 8_3:+51537352 | None:intergenic |
| TCAAGGTGGTTGTTGGAGTC+AGG | 0.410229 | 8_3:-51539962 | Msa1293940:intron |
| ATGTCTTTCTGTCATTTCAA+TGG | 0.415984 | 8_3:+51539195 | None:intergenic |
| TTGTTGACAGTCCTGTCCTT+TGG | 0.417946 | 8_3:-51539838 | Msa1293940:intron |
| GCGCTTCTTTCCGGATGATC+AGG | 0.418756 | 8_3:+51537305 | None:intergenic |
| AACTTACCCTAAAGCTACTT+TGG | 0.426096 | 8_3:+51538539 | None:intergenic |
| GATTCAACAGTGCACTCTAT+TGG | 0.426266 | 8_3:-51537554 | Msa1293940:CDS |
| CACAACCACAATACTTGAAA+AGG | 0.433137 | 8_3:+51536401 | None:intergenic |
| TGAGTAACAAGAGCATATAA+TGG | 0.437137 | 8_3:+51538130 | None:intergenic |
| ATCCTTGGAGGATGACTTCA+AGG | 0.437300 | 8_3:-51539979 | Msa1293940:CDS |
| GATGACTTCAAGGTGGTTGT+TGG | 0.437429 | 8_3:-51539969 | Msa1293940:CDS |
| TGTTGACAGTCCTGTCCTTT+GGG | 0.437680 | 8_3:-51539837 | Msa1293940:intron |
| CTTACTATATAGAAGAAGAT+TGG | 0.444395 | 8_3:+51540298 | None:intergenic |
| TAAATTTACTTCCTGGTGAC+AGG | 0.449075 | 8_3:+51540024 | None:intergenic |
| TTGTTCAATGGTTTCTACAA+TGG | 0.452001 | 8_3:+51537364 | None:intergenic |
| GAAAGTCGAGTGTGCGAACC+AGG | 0.453759 | 8_3:-51537592 | Msa1293940:CDS |
| TATCAGATTGGTAATCATCT+TGG | 0.458388 | 8_3:+51537477 | None:intergenic |
| CCATTGCTGATAAGTGTCAT+TGG | 0.459973 | 8_3:+51536355 | None:intergenic |
| ATTTGTCAAGCCTGATCATC+CGG | 0.461617 | 8_3:-51537315 | Msa1293940:CDS |
| AAAATATATCAAAAGATCCT+TGG | 0.464347 | 8_3:-51539994 | Msa1293940:CDS |
| ATTATATGCTCTTGTTACTC+AGG | 0.468536 | 8_3:-51538128 | Msa1293940:intron |
| TCTTAGAACACTTTCTGCAT+TGG | 0.472907 | 8_3:-51537170 | Msa1293940:three_prime_UTR |
| TGTGTAAAACGGAATCTTGA+AGG | 0.489533 | 8_3:+51540367 | None:intergenic |
| ACGATGTTTCATGTGTAAAA+CGG | 0.493532 | 8_3:+51540356 | None:intergenic |
| CAATGGTTTCTACAATGGCT+TGG | 0.496957 | 8_3:+51537369 | None:intergenic |
| AATAGAGTGCACTGTTGAAT+CGG | 0.497770 | 8_3:+51537556 | None:intergenic |
| AACAGAATACTTACAATGAC+AGG | 0.501258 | 8_3:+51539651 | None:intergenic |
| GAAAGACATGCTGTGGTCCA+AGG | 0.518835 | 8_3:-51539181 | Msa1293940:CDS |
| CATGTTTGACGTTGGTGATG+TGG | 0.523212 | 8_3:+51537442 | None:intergenic |
| AAGAAGCATGGAGTGAAACT+AGG | 0.529232 | 8_3:-51537614 | Msa1293940:CDS |
| TCAAGTCACATTGTCAAAGA+TGG | 0.529357 | 8_3:-51539218 | Msa1293940:CDS |
| GTGCAGGTCCACCTGTCACC+AGG | 0.534549 | 8_3:-51540035 | Msa1293940:intron |
| TAACAAGAGCATATAATGGA+AGG | 0.535620 | 8_3:+51538134 | None:intergenic |
| TTTGTCTGAGCCTTGAACAA+GGG | 0.549775 | 8_3:+51539153 | None:intergenic |
| TATGTAGATACGAGGATGGA+AGG | 0.556059 | 8_3:-51540727 | None:intergenic |
| TTGTCTGAGCCTTGAACAAG+GGG | 0.560509 | 8_3:+51539154 | None:intergenic |
| AATCATTGATTTAGAGCAGA+GGG | 0.561485 | 8_3:+51537139 | None:intergenic |
| AGATACGAGGATGGAAGGCA+TGG | 0.566527 | 8_3:-51540722 | Msa1293940:CDS |
| CTTGAACAAGGGGAATCCCT+TGG | 0.566793 | 8_3:+51539164 | None:intergenic |
| TCGAGTGTGCGAACCAGGGA+CGG | 0.570121 | 8_3:-51537587 | Msa1293940:CDS |
| ATATATCAAAAGATCCTTGG+AGG | 0.572516 | 8_3:-51539991 | Msa1293940:CDS |
| ATGTTTGACGTTGGTGATGT+GGG | 0.578433 | 8_3:+51537443 | None:intergenic |
| AAACAACGAATGACGCCCAA+AGG | 0.580314 | 8_3:+51539822 | None:intergenic |
| ATTTGATGATCAAACATCAA+AGG | 0.581307 | 8_3:-51537666 | Msa1293940:CDS |
| AAAGACATGCTGTGGTCCAA+GGG | 0.583506 | 8_3:-51539180 | Msa1293940:CDS |
| GTTACACCGTCACAAAACTA+CGG | 0.589574 | 8_3:-51537525 | Msa1293940:CDS |
| ATTTACTTCCTGGTGACAGG+TGG | 0.595068 | 8_3:+51540027 | None:intergenic |
| CACGGATACGAGTTTGCCAA+TGG | 0.596314 | 8_3:-51540681 | Msa1293940:intron |
| TACCATCAATATTTAGGACA+AGG | 0.599960 | 8_3:+51539798 | None:intergenic |
| ATTTGTCTGAGCCTTGAACA+AGG | 0.603739 | 8_3:+51539152 | None:intergenic |
| AACAAGAGCATATAATGGAA+GGG | 0.604802 | 8_3:+51538135 | None:intergenic |
| CACCTTGAAGTCATCCTCCA+AGG | 0.612962 | 8_3:+51539977 | None:intergenic |
| GAGTCAATTCAATATCAGAT+TGG | 0.613623 | 8_3:+51537465 | None:intergenic |
| TTGCAAGCTTGTAATCAGCA+TGG | 0.614046 | 8_3:+51538565 | None:intergenic |
| GACTACCTGACTCTGCGGAA+CGG | 0.625975 | 8_3:-51540135 | Msa1293940:CDS |
| TTACACCGTCACAAAACTAC+GGG | 0.627570 | 8_3:-51537524 | Msa1293940:CDS |
| ACGAGGATGGAAGGCATGGG+AGG | 0.635904 | 8_3:-51540718 | Msa1293940:CDS |
| GATACGAGGATGGAAGGCAT+GGG | 0.637824 | 8_3:-51540721 | Msa1293940:CDS |
| AAAATTGAATACCTGGAACA+AGG | 0.654833 | 8_3:+51539081 | None:intergenic |
| TAATCATTGATTTAGAGCAG+AGG | 0.656126 | 8_3:+51537138 | None:intergenic |
| ACTGTTAGCATGTTTGACGT+TGG | 0.657174 | 8_3:+51537434 | None:intergenic |
| GAGGCAGAGACATCGTCTCA+CGG | 0.661631 | 8_3:-51540699 | Msa1293940:CDS |
| ATAAGATGAAGAAGCAACTG+AGG | 0.662862 | 8_3:+51539112 | None:intergenic |
| AAAGTCGAGTGTGCGAACCA+GGG | 0.675466 | 8_3:-51537591 | Msa1293940:CDS |
| TGATCATCCGGAAAGAAGCG+CGG | 0.695093 | 8_3:-51537303 | Msa1293940:CDS |
| AGAGTGCACTGTTGAATCGG+TGG | 0.700800 | 8_3:+51537559 | None:intergenic |
| AAGCTGACTACCTGACTCTG+CGG | 0.706617 | 8_3:-51540140 | Msa1293940:CDS |
| AATGACAGAAAGACATGCTG+TGG | 0.718463 | 8_3:-51539188 | Msa1293940:CDS |
| CTTGGAGGATGACTTCAAGG+TGG | 0.722110 | 8_3:-51539976 | Msa1293940:CDS |
| TCTGCGGAACGGATTTATCG+CGG | 0.731044 | 8_3:-51540124 | Msa1293940:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAATTTAATATT+TGG | + | chr8_3:51540070-51540089 | None:intergenic | 0.0% |
| !! | AAAAATATTCTCTTATATTT+AGG | + | chr8_3:51536486-51536505 | None:intergenic | 10.0% |
| !!! | TAAGAGAATATTTTTTTTAA+AGG | - | chr8_3:51536491-51536510 | Msa1293940:intron | 10.0% |
| !! | AATAAAATTGGTATAATTAA+TGG | + | chr8_3:51536638-51536657 | None:intergenic | 10.0% |
| !! | AAATAAATTCATAAATCAAA+TGG | + | chr8_3:51537695-51537714 | None:intergenic | 10.0% |
| !!! | TTTTGAATTATTTATAAGTT+TGG | - | chr8_3:51537713-51537732 | Msa1293940:intron | 10.0% |
| !! | AAGTATATAAATCATTTAAT+TGG | - | chr8_3:51537807-51537826 | Msa1293940:intron | 10.0% |
| !! | TATATTTGCATATTAAAAAA+TGG | - | chr8_3:51540487-51540506 | Msa1293940:intron | 10.0% |
| !!! | TAAGAAAAGATTATTTTTTC+AGG | + | chr8_3:51536580-51536599 | None:intergenic | 15.0% |
| !!! | AATAATCTTTTCTTATATCT+AGG | - | chr8_3:51536585-51536604 | Msa1293940:intron | 15.0% |
| !! | TATAATTAATGGTAAATCAA+AGG | + | chr8_3:51536627-51536646 | None:intergenic | 15.0% |
| !! | TATTTAAAAAATTGAATACC+TGG | + | chr8_3:51538009-51538028 | None:intergenic | 15.0% |
| !!! | CTTTCTAAAATTATTATTTC+AGG | + | chr8_3:51538150-51538169 | None:intergenic | 15.0% |
| !! | TACAAAAAAAATAACATTTG+AGG | + | chr8_3:51538426-51538445 | None:intergenic | 15.0% |
| !!! | GTTATTTTTTTTGTAGATTA+TGG | - | chr8_3:51538431-51538450 | Msa1293940:intron | 15.0% |
| !!! | TTAATTGTAAAAGAGAATTT+TGG | + | chr8_3:51538571-51538590 | None:intergenic | 15.0% |
| !!! | AATTCTCTTTTACAATTAAA+TGG | - | chr8_3:51538572-51538591 | Msa1293940:CDS | 15.0% |
| !! | AAAATATATCAAAAGATCCT+TGG | - | chr8_3:51537086-51537105 | Msa1293940:intron | 20.0% |
| !! | CAAAGTTGACAAAAAAAAAA+TGG | + | chr8_3:51537650-51537669 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTGTAGATTATGG+TGG | - | chr8_3:51538434-51538453 | Msa1293940:intron | 20.0% |
| !! | TCAAATAAATCAATCACAAT+AGG | + | chr8_3:51538695-51538714 | None:intergenic | 20.0% |
| !!! | TTCTTTGATTGAAGTATTTT+TGG | - | chr8_3:51539032-51539051 | Msa1293940:intron | 20.0% |
| !! | GTAAAATTTGGACTTTATTA+TGG | + | chr8_3:51539257-51539276 | None:intergenic | 20.0% |
| !! | TGTATAAATGATAGTAAATG+AGG | + | chr8_3:51539335-51539354 | None:intergenic | 20.0% |
| !! | TTTATACATACAAGTTACTA+AGG | - | chr8_3:51539347-51539366 | Msa1293940:intron | 20.0% |
| !!! | TTTTTGAAATTTTTCCGTAT+TGG | - | chr8_3:51540579-51540598 | Msa1293940:intron | 20.0% |
| ! | GCAGCATTTGAAAATAAAAT+TGG | + | chr8_3:51536650-51536669 | None:intergenic | 25.0% |
| ! | CTTACTATATAGAAGAAGAT+TGG | + | chr8_3:51536785-51536804 | None:intergenic | 25.0% |
| !!! | ACTCTGAAATTTGCAATAAA+TGG | + | chr8_3:51536886-51536905 | None:intergenic | 25.0% |
| ! | TGAAAGTTAAATTTACTTCC+TGG | + | chr8_3:51537066-51537085 | None:intergenic | 25.0% |
| ! | TTTGCTTACCATCAATATTT+AGG | + | chr8_3:51537291-51537310 | None:intergenic | 25.0% |
| ! | AATTCGATAGGAAATAATTG+AGG | + | chr8_3:51537327-51537346 | None:intergenic | 25.0% |
| !!! | GTTAATCCGTTTTATTTTTC+AGG | - | chr8_3:51537375-51537394 | Msa1293940:CDS | 25.0% |
| ! | TCTGTACAAAATTTGAAGAT+TGG | - | chr8_3:51537453-51537472 | Msa1293940:CDS | 25.0% |
| ! | ATGAATCTTATCTTGAATTC+TGG | - | chr8_3:51537581-51537600 | Msa1293940:CDS | 25.0% |
| !!! | TCAGACAAATATTTTTGGTT+TGG | - | chr8_3:51537941-51537960 | Msa1293940:intron | 25.0% |
| !!! | CAGACAAATATTTTTGGTTT+GGG | - | chr8_3:51537942-51537961 | Msa1293940:intron | 25.0% |
| ! | CTAATGAGAGAAAATTACTT+TGG | - | chr8_3:51538278-51538297 | Msa1293940:intron | 25.0% |
| ! | TTCAGATAACATATTTCTTG+TGG | - | chr8_3:51538370-51538389 | Msa1293940:intron | 25.0% |
| ! | TAACATATTTCTTGTGGATA+TGG | - | chr8_3:51538376-51538395 | Msa1293940:intron | 25.0% |
| ! | AACATATTTCTTGTGGATAT+GGG | - | chr8_3:51538377-51538396 | Msa1293940:intron | 25.0% |
| !! | CATAATTTGCAGTATTCTTT+CGG | - | chr8_3:51538477-51538496 | Msa1293940:intron | 25.0% |
| !! | ATAATTTGCAGTATTCTTTC+GGG | - | chr8_3:51538478-51538497 | Msa1293940:intron | 25.0% |
| ! | TAAGTATGAAATGCATATTG+AGG | + | chr8_3:51538604-51538623 | None:intergenic | 25.0% |
| !! | GTTCTTTTCATAAGTTTTCT+TGG | + | chr8_3:51538809-51538828 | None:intergenic | 25.0% |
| ! | ATAACTTATATGAGAACAGT+TGG | - | chr8_3:51538831-51538850 | Msa1293940:intron | 25.0% |
| ! | GAATTCATCAGATTACTTTA+TGG | + | chr8_3:51538877-51538896 | None:intergenic | 25.0% |
| ! | TCATCAAACAATACAAAATC+AGG | + | chr8_3:51538997-51539016 | None:intergenic | 25.0% |
| !! | TTGTATTGTTTGATGATTAG+AGG | - | chr8_3:51539001-51539020 | Msa1293940:intron | 25.0% |
| ! | AAATTCAGTATTATTCTCGA+TGG | - | chr8_3:51539140-51539159 | Msa1293940:CDS | 25.0% |
| !! | ATAAAGTCCAAATTTTACGA+TGG | - | chr8_3:51539259-51539278 | Msa1293940:intron | 25.0% |
| ! | ATCAATACCATCGTAAAATT+TGG | + | chr8_3:51539269-51539288 | None:intergenic | 25.0% |
| !! | ATTTGATGATCAAACATCAA+AGG | - | chr8_3:51539414-51539433 | Msa1293940:intron | 25.0% |
| ! | TTTAATATTTGGATACTCTC+CGG | + | chr8_3:51540059-51540078 | None:intergenic | 25.0% |
| ! | ACATTTCCTTTATCTTTCTT+TGG | - | chr8_3:51540224-51540243 | Msa1293940:intron | 25.0% |
| !! | TTTCCCTTTCTAAGAAATTA+GGG | - | chr8_3:51540288-51540307 | Msa1293940:intron | 25.0% |
| ! | AAACCCTAATTTCTTAGAAA+GGG | + | chr8_3:51540294-51540313 | None:intergenic | 25.0% |
| ! | ATTAACAAACACAAGAAAAC+AGG | + | chr8_3:51540468-51540487 | None:intergenic | 25.0% |
| ! | TCAAAAATCAAGATACGATA+CGG | + | chr8_3:51540566-51540585 | None:intergenic | 25.0% |
| AAAGATCAATGTCATACCAT+TGG | + | chr8_3:51536418-51536437 | None:intergenic | 30.0% | |
| !! | TCTTTTCTTATATCTAGGAC+TGG | - | chr8_3:51536590-51536609 | Msa1293940:intron | 30.0% |
| ACGATGTTTCATGTGTAAAA+CGG | + | chr8_3:51536727-51536746 | None:intergenic | 30.0% | |
| CAATTTATCTTGCTTCTTTG+AGG | - | chr8_3:51536841-51536860 | Msa1293940:intron | 30.0% | |
| TTTGCAATAAATGGAAGAGA+TGG | + | chr8_3:51536877-51536896 | None:intergenic | 30.0% | |
| ATATATCAAAAGATCCTTGG+AGG | - | chr8_3:51537089-51537108 | Msa1293940:intron | 30.0% | |
| TTCCTTGTCCTAAATATTGA+TGG | - | chr8_3:51537280-51537299 | Msa1293940:exon | 30.0% | |
| ! | TACCATCAATATTTAGGACA+AGG | + | chr8_3:51537285-51537304 | None:intergenic | 30.0% |
| TGCAGAAAAGTAAATTCGAT+AGG | + | chr8_3:51537339-51537358 | None:intergenic | 30.0% | |
| TCTGCAGTTGAATATTCAAT+TGG | - | chr8_3:51537353-51537372 | Msa1293940:CDS | 30.0% | |
| !!! | ATCCGTTTTATTTTTCAGGA+TGG | - | chr8_3:51537379-51537398 | Msa1293940:CDS | 30.0% |
| TGCCATCCTGAAAAATAAAA+CGG | + | chr8_3:51537384-51537403 | None:intergenic | 30.0% | |
| ACTTACAATGACAGGAATTA+AGG | + | chr8_3:51537424-51537443 | None:intergenic | 30.0% | |
| AACAGAATACTTACAATGAC+AGG | + | chr8_3:51537432-51537451 | None:intergenic | 30.0% | |
| TCTTTAGTGTGCATCTATAT+TGG | - | chr8_3:51537556-51537575 | Msa1293940:CDS | 30.0% | |
| ! | TTTGTCAACTTTGTTTAGTC+AGG | - | chr8_3:51537657-51537676 | Msa1293940:CDS | 30.0% |
| ! | GAATCTCAATTTGATAACCA+TGG | - | chr8_3:51537774-51537793 | Msa1293940:intron | 30.0% |
| ! | TCAATTTGATAACCATGGTT+GGG | - | chr8_3:51537779-51537798 | Msa1293940:intron | 30.0% |
| ! | TAATTGGTTGCAGATGATTT+TGG | - | chr8_3:51537823-51537842 | Msa1293940:intron | 30.0% |
| ! | ATGTCTTTCTGTCATTTCAA+TGG | + | chr8_3:51537888-51537907 | None:intergenic | 30.0% |
| ! | AAGGCTCAGACAAATATTTT+TGG | - | chr8_3:51537936-51537955 | Msa1293940:intron | 30.0% |
| AAAATTGAATACCTGGAACA+AGG | + | chr8_3:51538002-51538021 | None:intergenic | 30.0% | |
| ATGAGAGAAAATTACTTTGG+AGG | - | chr8_3:51538281-51538300 | Msa1293940:intron | 30.0% | |
| ! | TAACATTTGAGGTGTAAAGA+TGG | + | chr8_3:51538415-51538434 | None:intergenic | 30.0% |
| TTCATCAGATTACTTTATGG+TGG | + | chr8_3:51538874-51538893 | None:intergenic | 30.0% | |
| TAATCTGATGAATTCTCATG+TGG | - | chr8_3:51538882-51538901 | Msa1293940:intron | 30.0% | |
| ! | AACAAGAGCATATAATGGAA+GGG | + | chr8_3:51538948-51538967 | None:intergenic | 30.0% |
| ! | TAACAAGAGCATATAATGGA+AGG | + | chr8_3:51538949-51538968 | None:intergenic | 30.0% |
| ! | TGAGTAACAAGAGCATATAA+TGG | + | chr8_3:51538953-51538972 | None:intergenic | 30.0% |
| ATTATATGCTCTTGTTACTC+AGG | - | chr8_3:51538952-51538971 | Msa1293940:intron | 30.0% | |
| ACTAAGAATGTGTTGGATTT+AGG | - | chr8_3:51539164-51539183 | Msa1293940:CDS | 30.0% | |
| !! | TGGTATTGATTATTCCTCAA+TGG | - | chr8_3:51539279-51539298 | Msa1293940:intron | 30.0% |
| TACATACAAGTTACTAAGGT+TGG | - | chr8_3:51539351-51539370 | Msa1293940:intron | 30.0% | |
| ! | TTGGTAAAACTTTTGCAGAT+GGG | - | chr8_3:51539370-51539389 | Msa1293940:intron | 30.0% |
| !! | CATCAAAGGCGTTAAAAAAA+TGG | - | chr8_3:51539428-51539447 | Msa1293940:intron | 30.0% |
| AATAGTGTGAAAAAGAAGCA+TGG | - | chr8_3:51539454-51539473 | Msa1293940:intron | 30.0% | |
| ! | TATCAGATTGGTAATCATCT+TGG | + | chr8_3:51539606-51539625 | None:intergenic | 30.0% |
| GAGTCAATTCAATATCAGAT+TGG | + | chr8_3:51539618-51539637 | None:intergenic | 30.0% | |
| TTGTTCAATGGTTTCTACAA+TGG | + | chr8_3:51539719-51539738 | None:intergenic | 30.0% | |
| !! | AACTGTTTGTTGTTGTTCAA+TGG | + | chr8_3:51539731-51539750 | None:intergenic | 30.0% |
| !! | AATCATTGATTTAGAGCAGA+GGG | + | chr8_3:51539944-51539963 | None:intergenic | 30.0% |
| !! | TAATCATTGATTTAGAGCAG+AGG | + | chr8_3:51539945-51539964 | None:intergenic | 30.0% |
| ! | CTTTCCCTTTCTAAGAAATT+AGG | - | chr8_3:51540287-51540306 | Msa1293940:intron | 30.0% |
| GAAACCCTAATTTCTTAGAA+AGG | + | chr8_3:51540295-51540314 | None:intergenic | 30.0% | |
| AATATTGACGATTAAGAGAG+TGG | + | chr8_3:51540417-51540436 | None:intergenic | 30.0% | |
| !!! | TTGTACCTTTTCAAGTATTG+TGG | - | chr8_3:51540674-51540693 | Msa1293940:intron | 30.0% |
| ATGAAAGCTATTACTCTCTG+CGG | - | chr8_3:51536459-51536478 | Msa1293940:intron | 35.0% | |
| ! | TTTCTTATATCTAGGACTGG+AGG | - | chr8_3:51536593-51536612 | Msa1293940:intron | 35.0% |
| ! | TTCTTATATCTAGGACTGGA+GGG | - | chr8_3:51536594-51536613 | Msa1293940:intron | 35.0% |
| ACATGATTAATGCACAACAG+AGG | + | chr8_3:51536689-51536708 | None:intergenic | 35.0% | |
| TGTGTAAAACGGAATCTTGA+AGG | + | chr8_3:51536716-51536735 | None:intergenic | 35.0% | |
| !! | TGGAATTTTAGTCCAACAAG+TGG | + | chr8_3:51536765-51536784 | None:intergenic | 35.0% |
| AGCATGCGTATTAGTAAAGT+TGG | + | chr8_3:51536809-51536828 | None:intergenic | 35.0% | |
| !! | TAATACGCATGCTGTTTCAT+AGG | - | chr8_3:51536816-51536835 | Msa1293940:intron | 35.0% |
| GCTTCTTTAGACAGTTCTAT+AGG | - | chr8_3:51536907-51536926 | Msa1293940:intron | 35.0% | |
| TAAATTTACTTCCTGGTGAC+AGG | + | chr8_3:51537059-51537078 | None:intergenic | 35.0% | |
| ! | TTGAAGATTGGTTGAGATGA+AGG | - | chr8_3:51537465-51537484 | Msa1293940:CDS | 35.0% |
| ! | TGAAGATTGGTTGAGATGAA+GGG | - | chr8_3:51537466-51537485 | Msa1293940:CDS | 35.0% |
| ! | CTCAATTTGATAACCATGGT+TGG | - | chr8_3:51537778-51537797 | Msa1293940:intron | 35.0% |
| TATACTTGTAATCCCAACCA+TGG | + | chr8_3:51537794-51537813 | None:intergenic | 35.0% | |
| TCAAGTCACATTGTCAAAGA+TGG | - | chr8_3:51537862-51537881 | Msa1293940:intron | 35.0% | |
| ATAAGATGAAGAAGCAACTG+AGG | + | chr8_3:51537971-51537990 | None:intergenic | 35.0% | |
| TTGAATGTAACCACATGTGT+CGG | - | chr8_3:51538178-51538197 | Msa1293940:intron | 35.0% | |
| ! | CAATAGCCAAAGTAGCTTTA+GGG | - | chr8_3:51538535-51538554 | Msa1293940:intron | 35.0% |
| AACTTACCCTAAAGCTACTT+TGG | + | chr8_3:51538544-51538563 | None:intergenic | 35.0% | |
| TATGAGCATGTAGTTGTTTG+AGG | - | chr8_3:51538642-51538661 | Msa1293940:intron | 35.0% | |
| ! | AAGTTTTCTTGGAGAGCTTA+TGG | + | chr8_3:51538798-51538817 | None:intergenic | 35.0% |
| !!! | GAATTCTCATGTGGTTTTGA+AGG | - | chr8_3:51538891-51538910 | Msa1293940:intron | 35.0% |
| !!! | CATGTGGTTTTGAAGGTTTT+TGG | - | chr8_3:51538898-51538917 | Msa1293940:intron | 35.0% |
| CACGTCATGTTTATCCTAAT+AGG | - | chr8_3:51539076-51539095 | Msa1293940:intron | 35.0% | |
| GTTTATCCTAATAGGACAGA+AGG | - | chr8_3:51539084-51539103 | Msa1293940:intron | 35.0% | |
| ! | ACAAAGCATTATGGAATCAG+AGG | + | chr8_3:51539193-51539212 | None:intergenic | 35.0% |
| ! | TGAGGACTAACAAAGCATTA+TGG | + | chr8_3:51539202-51539221 | None:intergenic | 35.0% |
| TTAGTCCTCATCTTATAACC+TGG | - | chr8_3:51539212-51539231 | Msa1293940:CDS | 35.0% | |
| ACAAACCAGGTTATAAGATG+AGG | + | chr8_3:51539220-51539239 | None:intergenic | 35.0% | |
| ! | CATCTTATAACCTGGTTTGT+AGG | - | chr8_3:51539220-51539239 | Msa1293940:CDS | 35.0% |
| !! | GTTGGTAAAACTTTTGCAGA+TGG | - | chr8_3:51539369-51539388 | Msa1293940:intron | 35.0% |
| AATAGAGTGCACTGTTGAAT+CGG | + | chr8_3:51539527-51539546 | None:intergenic | 35.0% | |
| TCTTAGAACACTTTCTGCAT+TGG | - | chr8_3:51539910-51539929 | Msa1293940:intron | 35.0% | |
| !!! | TCATCCATTTTGAAGTATCG+GGG | + | chr8_3:51539977-51539996 | None:intergenic | 35.0% |
| !!! | GTCATCCATTTTGAAGTATC+GGG | + | chr8_3:51539978-51539997 | None:intergenic | 35.0% |
| !!! | CGTCATCCATTTTGAAGTAT+CGG | + | chr8_3:51539979-51539998 | None:intergenic | 35.0% |
| GAAAGATGCAATTGTTAGTG+TGG | + | chr8_3:51540272-51540291 | None:intergenic | 35.0% | |
| ! | TTCAACTGTTACTTCCAAAG+TGG | - | chr8_3:51540312-51540331 | Msa1293940:CDS | 35.0% |
| !! | ATTTTTCCGTATTGGCGTAT+CGG | - | chr8_3:51540587-51540606 | Msa1293940:intron | 35.0% |
| CACAACCACAATACTTGAAA+AGG | + | chr8_3:51540682-51540701 | None:intergenic | 35.0% | |
| ! | TTAGACAACATGCCACTTGT+TGG | - | chr8_3:51536750-51536769 | Msa1293940:intron | 40.0% |
| CAAGATGAACGGTCAAGTAA+CGG | + | chr8_3:51537026-51537045 | None:intergenic | 40.0% | |
| ! | AGGATGGCATGCTATGTTTT+GGG | - | chr8_3:51537395-51537414 | Msa1293940:CDS | 40.0% |
| TGAATCACTACCACCTAAAC+TGG | - | chr8_3:51537614-51537633 | Msa1293940:CDS | 40.0% | |
| GAATCACTACCACCTAAACT+GGG | - | chr8_3:51537615-51537634 | Msa1293940:CDS | 40.0% | |
| !!! | TTGCAGATGATTTTGGCTGT+TGG | - | chr8_3:51537830-51537849 | Msa1293940:intron | 40.0% |
| AATGACAGAAAGACATGCTG+TGG | - | chr8_3:51537892-51537911 | Msa1293940:intron | 40.0% | |
| TTTGTCTGAGCCTTGAACAA+GGG | + | chr8_3:51537930-51537949 | None:intergenic | 40.0% | |
| ATTTGTCTGAGCCTTGAACA+AGG | + | chr8_3:51537931-51537950 | None:intergenic | 40.0% | |
| !! | TATCCATTTTGCCTTGTTCC+AGG | - | chr8_3:51537988-51538007 | Msa1293940:intron | 40.0% |
| ATACCTGGAACAAGGCAAAA+TGG | + | chr8_3:51537994-51538013 | None:intergenic | 40.0% | |
| !! | ATGAAGCACTGACACAAACA+CGG | - | chr8_3:51538103-51538122 | Msa1293940:intron | 40.0% |
| TTATTGAACACCGACACATG+TGG | + | chr8_3:51538191-51538210 | None:intergenic | 40.0% | |
| ! | CATGTGTCGGTGTTCAATAA+CGG | - | chr8_3:51538191-51538210 | Msa1293940:intron | 40.0% |
| TGTTCAATAACGGCACATGT+CGG | - | chr8_3:51538201-51538220 | Msa1293940:intron | 40.0% | |
| GGACATGCAAGTAAAGAAGT+AGG | - | chr8_3:51538229-51538248 | Msa1293940:intron | 40.0% | |
| ATTAGTGCAACGACTGAACT+AGG | + | chr8_3:51538263-51538282 | None:intergenic | 40.0% | |
| TTGCAAGCTTGTAATCAGCA+TGG | + | chr8_3:51538518-51538537 | None:intergenic | 40.0% | |
| GCAATAGCCAAAGTAGCTTT+AGG | - | chr8_3:51538534-51538553 | Msa1293940:intron | 40.0% | |
| ! | GTAGTTGTTTGAGGCTGTAT+CGG | - | chr8_3:51538651-51538670 | Msa1293940:intron | 40.0% |
| AATAGGCAGTAGAGACTAGA+AGG | + | chr8_3:51538678-51538697 | None:intergenic | 40.0% | |
| ! | AACATGACGTGTGTTGATCT+CGG | + | chr8_3:51539067-51539086 | None:intergenic | 40.0% |
| ACTAGTCCTTCTGTCCTATT+AGG | + | chr8_3:51539093-51539112 | None:intergenic | 40.0% | |
| ! | AATAGGACAGAAGGACTAGT+AGG | - | chr8_3:51539093-51539112 | Msa1293940:CDS | 40.0% |
| CAAAACATGCTCAACCATTG+AGG | + | chr8_3:51539296-51539315 | None:intergenic | 40.0% | |
| ! | AAGAAGCATGGAGTGAAACT+AGG | - | chr8_3:51539466-51539485 | Msa1293940:intron | 40.0% |
| GATTCAACAGTGCACTCTAT+TGG | - | chr8_3:51539526-51539545 | Msa1293940:intron | 40.0% | |
| GTTACACCGTCACAAAACTA+CGG | - | chr8_3:51539555-51539574 | Msa1293940:intron | 40.0% | |
| TTACACCGTCACAAAACTAC+GGG | - | chr8_3:51539556-51539575 | Msa1293940:intron | 40.0% | |
| !! | ATGTTTGACGTTGGTGATGT+GGG | + | chr8_3:51539640-51539659 | None:intergenic | 40.0% |
| ACTGTTAGCATGTTTGACGT+TGG | + | chr8_3:51539649-51539668 | None:intergenic | 40.0% | |
| CAATGGTTTCTACAATGGCT+TGG | + | chr8_3:51539714-51539733 | None:intergenic | 40.0% | |
| ATTTGTCAAGCCTGATCATC+CGG | - | chr8_3:51539765-51539784 | Msa1293940:intron | 40.0% | |
| ATTTAATCCGCGCTTCTTTC+CGG | + | chr8_3:51539787-51539806 | None:intergenic | 40.0% | |
| ! | GAAAGAAGCGCGGATTAAAT+AGG | - | chr8_3:51539787-51539806 | Msa1293940:intron | 40.0% |
| ACACAAGTATCCGTGTGTAT+CGG | + | chr8_3:51540127-51540146 | None:intergenic | 40.0% | |
| CTGGCACCAAAGAAAGATAA+AGG | + | chr8_3:51540233-51540252 | None:intergenic | 40.0% | |
| ATGCAATTGTTAGTGTGGTG+TGG | + | chr8_3:51540267-51540286 | None:intergenic | 40.0% | |
| AATCAAGATACGATACGGCT+GGG | + | chr8_3:51540561-51540580 | None:intergenic | 40.0% | |
| AAATCAAGATACGATACGGC+TGG | + | chr8_3:51540562-51540581 | None:intergenic | 40.0% | |
| ATTTACTTCCTGGTGACAGG+TGG | + | chr8_3:51537056-51537075 | None:intergenic | 45.0% | |
| ATCCTTGGAGGATGACTTCA+AGG | - | chr8_3:51537101-51537120 | Msa1293940:intron | 45.0% | |
| GATGACTTCAAGGTGGTTGT+TGG | - | chr8_3:51537111-51537130 | Msa1293940:intron | 45.0% | |
| !!! | TGTTTTTTCCGCGCGATAAC+TGG | - | chr8_3:51537181-51537200 | Msa1293940:three_prime_UTR | 45.0% |
| TTTCCAAACCAGTTATCGCG+CGG | + | chr8_3:51537192-51537211 | None:intergenic | 45.0% | |
| TTGTTGACAGTCCTGTCCTT+TGG | - | chr8_3:51537242-51537261 | Msa1293940:three_prime_UTR | 45.0% | |
| TGTTGACAGTCCTGTCCTTT+GGG | - | chr8_3:51537243-51537262 | Msa1293940:three_prime_UTR | 45.0% | |
| AAACAACGAATGACGCCCAA+AGG | + | chr8_3:51537261-51537280 | None:intergenic | 45.0% | |
| ! | CAGGATGGCATGCTATGTTT+TGG | - | chr8_3:51537394-51537413 | Msa1293940:CDS | 45.0% |
| ! | GGATGGCATGCTATGTTTTG+GGG | - | chr8_3:51537396-51537415 | Msa1293940:CDS | 45.0% |
| TCGCTTGTGTCAGAAGCTAT+TGG | + | chr8_3:51537494-51537513 | None:intergenic | 45.0% | |
| AAAGACATGCTGTGGTCCAA+GGG | - | chr8_3:51537900-51537919 | Msa1293940:intron | 45.0% | |
| TTGTCTGAGCCTTGAACAAG+GGG | + | chr8_3:51537929-51537948 | None:intergenic | 45.0% | |
| CGATGGCACTAAGAATGTGT+TGG | - | chr8_3:51539157-51539176 | Msa1293940:CDS | 45.0% | |
| CTAACTCTCTCCTACAAACC+AGG | + | chr8_3:51539233-51539252 | None:intergenic | 45.0% | |
| ! | CTGGTTTGTAGGAGAGAGTT+AGG | - | chr8_3:51539231-51539250 | Msa1293940:CDS | 45.0% |
| ! | GTTTTGTGACGGTGTAACGT+GGG | + | chr8_3:51539553-51539572 | None:intergenic | 45.0% |
| !! | AGTTTTGTGACGGTGTAACG+TGG | + | chr8_3:51539554-51539573 | None:intergenic | 45.0% |
| !!! | AGTGACCCGTAGTTTTGTGA+CGG | + | chr8_3:51539564-51539583 | None:intergenic | 45.0% |
| !! | CATGTTTGACGTTGGTGATG+TGG | + | chr8_3:51539641-51539660 | None:intergenic | 45.0% |
| GAAGCCCCGATACTTCAAAA+TGG | - | chr8_3:51539970-51539989 | Msa1293940:CDS | 45.0% | |
| !! | GATACGTATCGGGAAGTATC+GGG | + | chr8_3:51540037-51540056 | None:intergenic | 45.0% |
| ! | GGATACGTATCGGGAAGTAT+CGG | + | chr8_3:51540038-51540057 | None:intergenic | 45.0% |
| GATACTTCCCGATACGTATC+CGG | - | chr8_3:51540037-51540056 | Msa1293940:intron | 45.0% | |
| ATACTCTCCGGATACGTATC+GGG | + | chr8_3:51540047-51540066 | None:intergenic | 45.0% | |
| GATACTCTCCGGATACGTAT+CGG | + | chr8_3:51540048-51540067 | None:intergenic | 45.0% | |
| CACAAGTATCCGTGTGTATC+GGG | + | chr8_3:51540126-51540145 | None:intergenic | 45.0% | |
| TTGTTAGTGTGGTGTGGTGT+GGG | + | chr8_3:51540261-51540280 | None:intergenic | 45.0% | |
| ATTGTTAGTGTGGTGTGGTG+TGG | + | chr8_3:51540262-51540281 | None:intergenic | 45.0% | |
| TCCGTATCGTATCTCGTATC+CGG | - | chr8_3:51540622-51540641 | Msa1293940:intron | 45.0% | |
| CACGGATACGAGTTTGCCAA+TGG | - | chr8_3:51536399-51536418 | Msa1293940:three_prime_UTR | 50.0% | |
| AAGCTGACTACCTGACTCTG+CGG | - | chr8_3:51536940-51536959 | Msa1293940:intron | 50.0% | |
| TAAATCCGTTCCGCAGAGTC+AGG | + | chr8_3:51536953-51536972 | None:intergenic | 50.0% | |
| ! | TCTGCGGAACGGATTTATCG+CGG | - | chr8_3:51536956-51536975 | Msa1293940:intron | 50.0% |
| !! | GAACGGTCAAGTAACGGATG+CGG | + | chr8_3:51537020-51537039 | None:intergenic | 50.0% |
| CTTGACCGTTCATCTTGTGC+AGG | - | chr8_3:51537029-51537048 | Msa1293940:intron | 50.0% | |
| GTGGACCTGCACAAGATGAA+CGG | + | chr8_3:51537037-51537056 | None:intergenic | 50.0% | |
| CACCTTGAAGTCATCCTCCA+AGG | + | chr8_3:51537106-51537125 | None:intergenic | 50.0% | |
| CTTGGAGGATGACTTCAAGG+TGG | - | chr8_3:51537104-51537123 | Msa1293940:intron | 50.0% | |
| TCAAGGTGGTTGTTGGAGTC+AGG | - | chr8_3:51537118-51537137 | Msa1293940:intron | 50.0% | |
| TTTCCGCGCGATAACTGGTT+TGG | - | chr8_3:51537186-51537205 | Msa1293940:three_prime_UTR | 50.0% | |
| GACACAAGCGAGTCGTATCT+CGG | - | chr8_3:51537503-51537522 | Msa1293940:CDS | 50.0% | |
| CTAGCTACACCCAGTTTAGG+TGG | + | chr8_3:51537627-51537646 | None:intergenic | 50.0% | |
| ! | TGGCTAGCTACACCCAGTTT+AGG | + | chr8_3:51537630-51537649 | None:intergenic | 50.0% |
| GAAAGACATGCTGTGGTCCA+AGG | - | chr8_3:51537899-51537918 | Msa1293940:intron | 50.0% | |
| CTTGAACAAGGGGAATCCCT+TGG | + | chr8_3:51537919-51537938 | None:intergenic | 50.0% | |
| CAAGGGATTCCCCTTGTTCA+AGG | - | chr8_3:51537917-51537936 | Msa1293940:intron | 50.0% | |
| GAAGGGTGATGTAACTGCAG+AGG | + | chr8_3:51538931-51538950 | None:intergenic | 50.0% | |
| AAAGTCGAGTGTGCGAACCA+GGG | - | chr8_3:51539489-51539508 | Msa1293940:intron | 50.0% | |
| AGAGTGCACTGTTGAATCGG+TGG | + | chr8_3:51539524-51539543 | None:intergenic | 50.0% | |
| TGATCATCCGGAAAGAAGCG+CGG | - | chr8_3:51539777-51539796 | Msa1293940:intron | 50.0% | |
| TGCATGATACGCAGGGGATA+CGG | + | chr8_3:51540004-51540023 | None:intergenic | 50.0% | |
| TATCGGTGCATGATACGCAG+GGG | + | chr8_3:51540010-51540029 | None:intergenic | 50.0% | |
| ! | GTATCGGTGCATGATACGCA+GGG | + | chr8_3:51540011-51540030 | None:intergenic | 50.0% |
| !! | GGGACGTATCGGAAAGTATC+GGG | + | chr8_3:51540106-51540125 | None:intergenic | 50.0% |
| ! | CGGGACGTATCGGAAAGTAT+CGG | + | chr8_3:51540107-51540126 | None:intergenic | 50.0% |
| CACCGTCGAAGTCTTGGTAT+CGG | - | chr8_3:51540352-51540371 | Msa1293940:CDS | 50.0% | |
| GTCCGATACCAAGACTTCGA+CGG | + | chr8_3:51540357-51540376 | None:intergenic | 50.0% | |
| ! | GTCTTGGTATCGGACGACTT+TGG | - | chr8_3:51540362-51540381 | Msa1293940:CDS | 50.0% |
| ! | ACTGCACCGATACGCCAATA+CGG | + | chr8_3:51540596-51540615 | None:intergenic | 50.0% |
| CCCGGATACGAGATACGATA+CGG | + | chr8_3:51540626-51540645 | None:intergenic | 50.0% | |
| CCGTATCGTATCTCGTATCC+GGG | - | chr8_3:51540623-51540642 | Msa1293940:intron | 50.0% | |
| TCCGGGCTTCACAGTTGATT+AGG | - | chr8_3:51540640-51540659 | Msa1293940:intron | 50.0% | |
| GCCTAATCAACTGTGAAGCC+CGG | + | chr8_3:51540644-51540663 | None:intergenic | 50.0% | |
| GAGGCAGAGACATCGTCTCA+CGG | - | chr8_3:51536381-51536400 | Msa1293940:three_prime_UTR | 55.0% | |
| GACTACCTGACTCTGCGGAA+CGG | - | chr8_3:51536945-51536964 | Msa1293940:intron | 55.0% | |
| ACGAATGACGCCCAAAGGAC+AGG | + | chr8_3:51537256-51537275 | None:intergenic | 55.0% | |
| TAACGGCACATGTCGGACAC+TGG | - | chr8_3:51538208-51538227 | Msa1293940:intron | 55.0% | |
| GAAAGTCGAGTGTGCGAACC+AGG | - | chr8_3:51539488-51539507 | Msa1293940:intron | 55.0% | |
| GCGCTTCTTTCCGGATGATC+AGG | + | chr8_3:51539778-51539797 | None:intergenic | 55.0% | |
| !! | GGTATCGGTGCATGATACGC+AGG | + | chr8_3:51540012-51540031 | None:intergenic | 55.0% |
| !! | GGGAAGTATCGGGCAGGTAT+CGG | + | chr8_3:51540027-51540046 | None:intergenic | 55.0% |
| CCGTGTGTATCGGGACGTAT+CGG | + | chr8_3:51540117-51540136 | None:intergenic | 55.0% | |
| CCGATACGTCCCGATACACA+CGG | - | chr8_3:51540114-51540133 | Msa1293940:intron | 55.0% | |
| AAAGTGGACGGCGACCACTT+TGG | + | chr8_3:51540329-51540348 | None:intergenic | 55.0% | |
| AAAGTGGTCGCCGTCCACTT+TGG | - | chr8_3:51540328-51540347 | Msa1293940:CDS | 55.0% | |
| TTTGGCCACCGTCGAAGTCT+TGG | - | chr8_3:51540346-51540365 | Msa1293940:CDS | 55.0% | |
| CGATACCAAGACTTCGACGG+TGG | + | chr8_3:51540354-51540373 | None:intergenic | 55.0% | |
| ! | ACGAGGATGGAAGGCATGGG+AGG | - | chr8_3:51536362-51536381 | Msa1293940:three_prime_UTR | 60.0% |
| TCGAGTGTGCGAACCAGGGA+CGG | - | chr8_3:51539493-51539512 | Msa1293940:intron | 60.0% | |
| !! | CGTATCGGGAAGTATCGGGC+AGG | + | chr8_3:51540033-51540052 | None:intergenic | 60.0% |
| TCGACGGTGGCCAAAGTGGA+CGG | + | chr8_3:51540341-51540360 | None:intergenic | 60.0% | |
| GACTTCGACGGTGGCCAAAG+TGG | + | chr8_3:51540345-51540364 | None:intergenic | 60.0% | |
| GTGCAGGTCCACCTGTCACC+AGG | - | chr8_3:51537045-51537064 | Msa1293940:intron | 65.0% | |
| ATCGGTGGTGCTTCCGTCCC+TGG | + | chr8_3:51539509-51539528 | None:intergenic | 65.0% | |
| TGGTGTGGTGTGGGTCGTGC+TGG | + | chr8_3:51540252-51540271 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 51536360 | 51540742 | 51536360 | ID=Msa1293940;Name=Msa1293940 |
| chr8_3 | mRNA | 51536360 | 51540742 | 51536360 | ID=Msa1293940-mRNA-1;Parent=Msa1293940;Name=Msa1293940-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.8|0.81|1|0.5|0.63|11|242|366 |
| chr8_3 | exon | 51536360 | 51536440 | 51536360 | ID=Msa1293940-mRNA-1:exon:14478;Parent=Msa1293940-mRNA-1 |
| chr8_3 | exon | 51537137 | 51537714 | 51537137 | ID=Msa1293940-mRNA-1:exon:14477;Parent=Msa1293940-mRNA-1 |
| chr8_3 | exon | 51538129 | 51538165 | 51538129 | ID=Msa1293940-mRNA-1:exon:14476;Parent=Msa1293940-mRNA-1 |
| chr8_3 | exon | 51538546 | 51538613 | 51538546 | ID=Msa1293940-mRNA-1:exon:14475;Parent=Msa1293940-mRNA-1 |
| chr8_3 | exon | 51539093 | 51539266 | 51539093 | ID=Msa1293940-mRNA-1:exon:14474;Parent=Msa1293940-mRNA-1 |
| chr8_3 | exon | 51539665 | 51539705 | 51539665 | ID=Msa1293940-mRNA-1:exon:14473;Parent=Msa1293940-mRNA-1 |
| chr8_3 | exon | 51539801 | 51539850 | 51539801 | ID=Msa1293940-mRNA-1:exon:14472;Parent=Msa1293940-mRNA-1 |
| chr8_3 | exon | 51539963 | 51540051 | 51539963 | ID=Msa1293940-mRNA-1:exon:14471;Parent=Msa1293940-mRNA-1 |
| chr8_3 | exon | 51540125 | 51540199 | 51540125 | ID=Msa1293940-mRNA-1:exon:14470;Parent=Msa1293940-mRNA-1 |
| chr8_3 | exon | 51540303 | 51540391 | 51540303 | ID=Msa1293940-mRNA-1:exon:14469;Parent=Msa1293940-mRNA-1 |
| chr8_3 | exon | 51540682 | 51540742 | 51540682 | ID=Msa1293940-mRNA-1:exon:14468;Parent=Msa1293940-mRNA-1 |
| chr8_3 | CDS | 51540682 | 51540742 | 51540682 | ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1 |
| chr8_3 | CDS | 51540303 | 51540391 | 51540303 | ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1 |
| chr8_3 | CDS | 51540125 | 51540199 | 51540125 | ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1 |
| chr8_3 | CDS | 51539963 | 51540051 | 51539963 | ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1 |
| chr8_3 | CDS | 51539801 | 51539850 | 51539801 | ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1 |
| chr8_3 | CDS | 51539665 | 51539705 | 51539665 | ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1 |
| chr8_3 | CDS | 51539093 | 51539266 | 51539093 | ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1 |
| chr8_3 | CDS | 51538546 | 51538613 | 51538546 | ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1 |
| chr8_3 | CDS | 51538129 | 51538165 | 51538129 | ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1 |
| chr8_3 | CDS | 51537298 | 51537714 | 51537298 | ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1 |
| chr8_3 | three_prime_UTR | 51537137 | 51537297 | 51537137 | ID=Msa1293940-mRNA-1:three_prime_utr;Parent=Msa1293940-mRNA-1 |
| chr8_3 | three_prime_UTR | 51536360 | 51536440 | 51536360 | ID=Msa1293940-mRNA-1:three_prime_utr;Parent=Msa1293940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
