AlfalfaGEDB | Msa1293940

M. sativa cultivar zhongmu-4 / Msa1293940

KEGG: K08472
GO: GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009856 GO:0010483 GO:0012505 GO:0016020 GO:0022414 GO:0032501 GO:0044424 GO:0044464 GO:0044703 GO:0044706 GO:0050896 GO:0051703 GO:0051704 GO:0071944
PFAM: PF03094.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293940	XP_003629098.2	89.119	386	22	2	1	366	203	588	0.0	707

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293940	sp\|O22757\|MLO8_ARATH	57.215	395	129	8	1	365	206	590	1.63e-143	422

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293940	A0A396GSS4	89.119	386	22	2	1	366	203	588	0.0	707

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0187830	Msa1293940	0.801678	8.038162e-49	-8.615850e-47
Msa0229590	Msa1293940	0.826488	2.639013e-54	-8.615850e-47
Msa0466010	Msa1293940	0.800986	1.114267e-48	-8.615850e-47
Msa0580920	Msa1293940	0.825423	4.726243e-54	-8.615850e-47
Msa0708310	Msa1293940	0.800548	1.368942e-48	-8.615850e-47
Msa0957830	Msa1293940	0.818331	2.072764e-52	-8.615850e-47
Msa0972770	Msa1293940	0.807166	5.771051e-50	-8.615850e-47
Msa1200710	Msa1293940	0.870422	1.476938e-66	-8.615850e-47
Msa1293940	Msa1408180	0.819671	1.027606e-52	-8.615850e-47
Msa1293940	Msa1448980	0.822405	2.411158e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293940	MtrunA17_Chr8g0370181	89.119	386	22	2	1	366	203	588	0.0	707
Msa1293940	MtrunA17_Chr5g0407381	67.956	362	82	8	1	338	196	547	5.21e-167	478
Msa1293940	MtrunA17_Chr3g0144201	53.776	331	101	4	1	280	201	530	2.15e-108	328
Msa1293940	MtrunA17_Chr3g0144171	44.253	348	164	6	1	322	180	523	1.63e-98	302
Msa1293940	MtrunA17_Chr6g0462051	44.729	351	156	8	1	318	182	527	7.04e-97	299
Msa1293940	MtrunA17_Chr2g0326301	44.000	325	151	6	1	303	186	501	2.04e-90	283
Msa1293940	MtrunA17_Chr8g0337941	43.571	280	134	4	1	256	194	473	5.63e-69	225
Msa1293940	MtrunA17_Chr8g0337931	39.339	333	166	7	1	303	180	506	1.23e-67	221
Msa1293940	MtrunA17_Chr3g0145831	38.820	322	169	6	1	295	187	507	1.24e-64	214
Msa1293940	MtrunA17_Chr4g0040611	33.867	375	211	8	1	347	159	524	1.41e-63	212

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1293940	AT2G17480.1	57.215	395	129	8	1	365	206	590	1.65e-144	422
Msa1293940	AT5G65970.1	61.176	340	107	4	1	315	188	527	5.99e-137	402
Msa1293940	AT2G17430.1	58.559	333	114	3	1	309	190	522	1.42e-136	400
Msa1293940	AT2G33670.1	60.145	276	89	3	1	256	176	450	3.63e-115	344
Msa1293940	AT1G42560.1	58.123	277	95	3	1	257	183	458	1.79e-112	336
Msa1293940	AT5G65970.2	73.481	181	48	0	1	181	188	368	2.88e-99	303
Msa1293940	AT1G61560.2	44.892	323	154	4	1	301	124	444	6.69e-94	290
Msa1293940	AT1G61560.3	44.892	323	154	4	1	301	124	444	6.69e-94	290
Msa1293940	AT2G39200.1	43.620	337	159	5	1	315	180	507	1.56e-93	291
Msa1293940	AT1G61560.1	44.753	324	155	4	1	302	186	507	1.66e-93	291

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Find 88 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATATCAAAAGATCCT+TGG	0.464347	8_3:-51539994	Msa1293940:CDS
AAAATTGAATACCTGGAACA+AGG	0.654833	8_3:+51539081	None:intergenic
AAACAACGAATGACGCCCAA+AGG	0.580314	8_3:+51539822	None:intergenic
AAAGACATGCTGTGGTCCAA+GGG	0.583506	8_3:-51539180	Msa1293940:CDS
AAAGTCGAGTGTGCGAACCA+GGG	0.675466	8_3:-51537591	Msa1293940:CDS
AACAAGAGCATATAATGGAA+GGG	0.604802	8_3:+51538135	None:intergenic
AACAGAATACTTACAATGAC+AGG	0.501258	8_3:+51539651	None:intergenic
AACTGTTTGTTGTTGTTCAA+TGG	0.409950	8_3:+51537352	None:intergenic
AACTTACCCTAAAGCTACTT+TGG	0.426096	8_3:+51538539	None:intergenic
AAGAAGCATGGAGTGAAACT+AGG	0.529232	8_3:-51537614	Msa1293940:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATCAATGTCATACCAT+TGG	+	chr8_3:51536418-51536437	None:intergenic	30.0%
ACGATGTTTCATGTGTAAAA+CGG	+	chr8_3:51536727-51536746	None:intergenic	30.0%
CAATTTATCTTGCTTCTTTG+AGG	-	chr8_3:51536841-51536860	Msa1293940:intron	30.0%
TTTGCAATAAATGGAAGAGA+TGG	+	chr8_3:51536877-51536896	None:intergenic	30.0%
ATATATCAAAAGATCCTTGG+AGG	-	chr8_3:51537089-51537108	Msa1293940:intron	30.0%
TTCCTTGTCCTAAATATTGA+TGG	-	chr8_3:51537280-51537299	Msa1293940:exon	30.0%
TGCAGAAAAGTAAATTCGAT+AGG	+	chr8_3:51537339-51537358	None:intergenic	30.0%
TCTGCAGTTGAATATTCAAT+TGG	-	chr8_3:51537353-51537372	Msa1293940:CDS	30.0%
TGCCATCCTGAAAAATAAAA+CGG	+	chr8_3:51537384-51537403	None:intergenic	30.0%
ACTTACAATGACAGGAATTA+AGG	+	chr8_3:51537424-51537443	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	51536360	51540742	51536360	ID=Msa1293940;Name=Msa1293940
chr8_3	mRNA	51536360	51540742	51536360	ID=Msa1293940-mRNA-1;Parent=Msa1293940;Name=Msa1293940-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|0.8\|0.81\|1\|0.5\|0.63\|11\|242\|366
chr8_3	exon	51536360	51536440	51536360	ID=Msa1293940-mRNA-1:exon:14478;Parent=Msa1293940-mRNA-1
chr8_3	exon	51537137	51537714	51537137	ID=Msa1293940-mRNA-1:exon:14477;Parent=Msa1293940-mRNA-1
chr8_3	exon	51538129	51538165	51538129	ID=Msa1293940-mRNA-1:exon:14476;Parent=Msa1293940-mRNA-1
chr8_3	exon	51538546	51538613	51538546	ID=Msa1293940-mRNA-1:exon:14475;Parent=Msa1293940-mRNA-1
chr8_3	exon	51539093	51539266	51539093	ID=Msa1293940-mRNA-1:exon:14474;Parent=Msa1293940-mRNA-1
chr8_3	exon	51539665	51539705	51539665	ID=Msa1293940-mRNA-1:exon:14473;Parent=Msa1293940-mRNA-1
chr8_3	exon	51539801	51539850	51539801	ID=Msa1293940-mRNA-1:exon:14472;Parent=Msa1293940-mRNA-1
chr8_3	exon	51539963	51540051	51539963	ID=Msa1293940-mRNA-1:exon:14471;Parent=Msa1293940-mRNA-1
chr8_3	exon	51540125	51540199	51540125	ID=Msa1293940-mRNA-1:exon:14470;Parent=Msa1293940-mRNA-1
chr8_3	exon	51540303	51540391	51540303	ID=Msa1293940-mRNA-1:exon:14469;Parent=Msa1293940-mRNA-1
chr8_3	exon	51540682	51540742	51540682	ID=Msa1293940-mRNA-1:exon:14468;Parent=Msa1293940-mRNA-1
chr8_3	CDS	51540682	51540742	51540682	ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1
chr8_3	CDS	51540303	51540391	51540303	ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1
chr8_3	CDS	51540125	51540199	51540125	ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1
chr8_3	CDS	51539963	51540051	51539963	ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1
chr8_3	CDS	51539801	51539850	51539801	ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1
chr8_3	CDS	51539665	51539705	51539665	ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1
chr8_3	CDS	51539093	51539266	51539093	ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1
chr8_3	CDS	51538546	51538613	51538546	ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1
chr8_3	CDS	51538129	51538165	51538129	ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1
chr8_3	CDS	51537298	51537714	51537298	ID=Msa1293940-mRNA-1:cds;Parent=Msa1293940-mRNA-1
chr8_3	three_prime_UTR	51537137	51537297	51537137	ID=Msa1293940-mRNA-1:three_prime_utr;Parent=Msa1293940-mRNA-1
chr8_3	three_prime_UTR	51536360	51536440	51536360	ID=Msa1293940-mRNA-1:three_prime_utr;Parent=Msa1293940-mRNA-1

Gene Sequence

>Msa1293940

ATACGAGGATGGAAGGCATGGGAGGCAGAGACATCGTCTCACGGATACGAGTTTGCCAATGATCCTTCAAGATTCCGTTTTACACATGAAACATCGTTTGTTAGACAACATGCCACTTGTTGGACTAAAATTCCAATCTTCTTCTATATAAGTTGCTTCTTTAGACAGTTCTATAGGTCTGTCGAGAAAGCTGACTACCTGACTCTGCGGAACGGATTTATCGCGGTCCACCTGTCACCAGGAAGTAAATTTAACTTTCAAAAATATATCAAAAGATCCTTGGAGGATGACTTCAAGGTGGTTGTTGGAGTCAGTCCTGTCCTTTGGGCGTCATTCGTTGTTTTCCTTGTCCTAAATATTGATGGATGGCATGCTATGTTTTGGGGATCCTTAATTCCTGTCATTATGATTTTGGCTGTTGGAACAAAACTTCAAGTCACATTGTCAAAGATGGCCATTGAAATGACAGAAAGACATGCTGTGGTCCAAGGGATTCCCCTTGTTCAAGGCTCAGACAAATATTTTTGGTTTGGGAAGCCTCAGTTGCTTCTTCATCTTATCCATTTTGCCTTGTTCCAGTATTCTTTCGGGCTGATAAATTGTTTCCATGCTGATTACAAGCTTGCAATAGCCAAAGTAGCTTTAGGTTACATCACCCTTCCATTATATGCTCTTGTTACTCAGATGGGATCAACAATGAAAAAATCAATATTTGATGATCAAACATCAAAGGCGTTAAAAAAATGGCACAATAGTGTGAAAAAGAAGCATGGAGTGAAACTAGGAAAGTCGAGTGTGCGAACCAGGGACGGAAGCACCACCGATTCAACAGTGCACTCTATTGGTCCCACGTTACACCGTCACAAAACTACGGGTCACTCTACTCGCTACGATAACGACCAAGATGATTACCAATCTGATATTGAATTGACTCCCACATCACCAACGTCAAACATGCTAACAGTAAGAGTAGATCATGTTGAGCAAGATGCAAAAGAAAATGAACACCAAGCCATTGTAGAAACCATTGAACAACAACAAACAGTTCTACGTAGCTTGTCATTTGTCAAGCCTGATCATCCGGAAAGAAGCGCGGATTAA

Protein sequence

>Msa1293940

IRGWKAWEAETSSHGYEFANDPSRFRFTHETSFVRQHATCWTKIPIFFYISCFFRQFYRSVEKADYLTLRNGFIAVHLSPGSKFNFQKYIKRSLEDDFKVVVGVSPVLWASFVVFLVLNIDGWHAMFWGSLIPVIMILAVGTKLQVTLSKMAIEMTERHAVVQGIPLVQGSDKYFWFGKPQLLLHLIHFALFQYSFGLINCFHADYKLAIAKVALGYITLPLYALVTQMGSTMKKSIFDDQTSKALKKWHNSVKKKHGVKLGKSSVRTRDGSTTDSTVHSIGPTLHRHKTTGHSTRYDNDQDDYQSDIELTPTSPTSNMLTVRVDHVEQDAKENEHQAIVETIEQQQTVLRSLSFVKPDHPERSAD*