Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305040 | GAU11476.1 | 87.461 | 319 | 39 | 1 | 1 | 319 | 1 | 318 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305040 | sp|I6YGS0|EPHA_MYCTU | 36.308 | 325 | 189 | 6 | 1 | 316 | 1 | 316 | 5.62e-62 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305040 | A2Q320 | 84.639 | 319 | 49 | 0 | 1 | 319 | 1 | 319 | 0.0 | 568 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621940 | Msa1305040 | 0.999291 | 4.520940e-301 | -8.615850e-47 |
| Msa0622010 | Msa1305040 | 0.996557 | 4.512964e-229 | -8.615850e-47 |
| Msa1305040 | Msa1433300 | 0.998092 | 5.865898e-256 | -8.615850e-47 |
| Msa1039480 | Msa1305040 | 0.884753 | 1.464221e-71 | -8.615850e-47 |
| Msa1085590 | Msa1305040 | 0.864554 | 1.118364e-64 | -8.615850e-47 |
| Msa0575990 | Msa1305040 | 0.826744 | 2.293035e-54 | -8.615850e-47 |
| Msa0576100 | Msa1305040 | 0.821888 | 3.178154e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305040 | MtrunA17_Chr7g0272481 | 84.639 | 319 | 49 | 0 | 1 | 319 | 1 | 319 | 0.0 | 568 |
| Msa1305040 | MtrunA17_Chr7g0272531 | 82.759 | 319 | 55 | 0 | 1 | 319 | 31 | 349 | 0.0 | 567 |
| Msa1305040 | MtrunA17_Chr7g0272501 | 82.445 | 319 | 56 | 0 | 1 | 319 | 1 | 319 | 0.0 | 563 |
| Msa1305040 | MtrunA17_Chr7g0272181 | 81.818 | 319 | 58 | 0 | 1 | 319 | 1 | 319 | 0.0 | 559 |
| Msa1305040 | MtrunA17_Chr7g0272171 | 81.191 | 319 | 60 | 0 | 1 | 319 | 1 | 319 | 0.0 | 553 |
| Msa1305040 | MtrunA17_Chr7g0272431 | 72.897 | 321 | 83 | 2 | 1 | 319 | 1 | 319 | 4.28e-179 | 497 |
| Msa1305040 | MtrunA17_Chr7g0272441 | 73.832 | 321 | 80 | 2 | 1 | 319 | 1 | 319 | 1.85e-177 | 493 |
| Msa1305040 | MtrunA17_Chr4g0000111 | 71.207 | 323 | 88 | 3 | 1 | 319 | 1 | 322 | 7.57e-175 | 487 |
| Msa1305040 | MtrunA17_Chr7g0272451 | 71.160 | 319 | 89 | 2 | 1 | 319 | 1 | 316 | 2.56e-174 | 485 |
| Msa1305040 | MtrunA17_Chr4g0067581 | 61.059 | 321 | 121 | 3 | 1 | 319 | 37 | 355 | 1.94e-142 | 406 |
| Msa1305040 | MtrunA17_Chr7g0269471 | 56.740 | 319 | 136 | 2 | 1 | 319 | 1 | 317 | 3.02e-134 | 384 |
| Msa1305040 | MtrunA17_Chr8g0372491 | 46.708 | 319 | 166 | 3 | 1 | 319 | 3 | 317 | 1.24e-103 | 306 |
| Msa1305040 | MtrunA17_Chr7g0272471 | 82.051 | 156 | 28 | 0 | 1 | 156 | 1 | 156 | 9.05e-96 | 280 |
| Msa1305040 | MtrunA17_Chr1g0192291 | 73.585 | 159 | 38 | 2 | 1 | 156 | 1 | 158 | 3.10e-83 | 249 |
| Msa1305040 | MtrunA17_Chr2g0324141 | 37.383 | 321 | 187 | 7 | 1 | 318 | 1 | 310 | 1.14e-66 | 211 |
| Msa1305040 | MtrunA17_Chr2g0324161 | 36.760 | 321 | 189 | 7 | 1 | 318 | 1 | 310 | 3.80e-64 | 205 |
| Msa1305040 | MtrunA17_Chr4g0047701 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 6.95e-62 | 199 |
| Msa1305040 | MtrunA17_Chr4g0047681 | 34.579 | 321 | 195 | 6 | 1 | 318 | 1 | 309 | 2.08e-59 | 192 |
| Msa1305040 | MtrunA17_Chr7g0272391 | 69.231 | 117 | 14 | 2 | 161 | 276 | 1 | 96 | 2.65e-45 | 150 |
| Msa1305040 | MtrunA17_Chr7g0272461 | 59.813 | 107 | 39 | 2 | 177 | 281 | 1 | 105 | 1.22e-36 | 128 |
| Msa1305040 | MtrunA17_Chr3g0086531 | 72.603 | 73 | 20 | 0 | 80 | 152 | 1 | 73 | 1.58e-33 | 119 |
| Msa1305040 | MtrunA17_Chr7g0272511 | 76.316 | 38 | 9 | 0 | 278 | 315 | 29 | 66 | 8.87e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305040 | AT3G05600.1 | 61.111 | 324 | 121 | 4 | 1 | 319 | 1 | 324 | 5.20e-149 | 422 |
| Msa1305040 | AT4G02340.1 | 56.386 | 321 | 133 | 4 | 1 | 319 | 1 | 316 | 3.32e-134 | 384 |
| Msa1305040 | AT4G15960.1 | 54.154 | 325 | 142 | 3 | 1 | 319 | 51 | 374 | 1.37e-125 | 364 |
| Msa1305040 | AT2G26740.1 | 59.317 | 322 | 124 | 4 | 4 | 319 | 1 | 321 | 8.38e-125 | 360 |
| Msa1305040 | AT2G26750.1 | 57.632 | 321 | 130 | 4 | 4 | 319 | 1 | 320 | 1.32e-119 | 347 |
| Msa1305040 | AT3G05600.2 | 61.728 | 243 | 88 | 4 | 1 | 238 | 1 | 243 | 3.92e-109 | 317 |
| Msa1305040 | AT4G15955.3 | 51.077 | 325 | 123 | 5 | 5 | 319 | 6 | 304 | 7.53e-106 | 311 |
| Msa1305040 | AT3G51000.1 | 44.954 | 327 | 159 | 6 | 3 | 319 | 4 | 319 | 1.33e-97 | 291 |
| Msa1305040 | AT4G15955.2 | 57.471 | 174 | 64 | 2 | 5 | 168 | 6 | 179 | 1.34e-67 | 209 |
| Msa1305040 | AT4G15955.1 | 57.576 | 165 | 60 | 2 | 5 | 159 | 6 | 170 | 1.51e-63 | 199 |
Find 96 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTAGGCTTTGACTCTTTC+AGG | 0.145162 | 8_3:-68340717 | None:intergenic |
| CTACTATATCTGCAGATTTC+AGG | 0.187669 | 8_3:+68340818 | Msa1305040:CDS |
| CATGATTGGGGTGCCTTAAT+TGG | 0.213822 | 8_3:+68340672 | Msa1305040:CDS |
| CCAGTAGTCTTGTTCCTTCA+TGG | 0.244564 | 8_3:+68340447 | Msa1305040:CDS |
| TCTTTCTTGTTGCTCATGAT+TGG | 0.261993 | 8_3:+68340658 | Msa1305040:CDS |
| GAGGAAGTGATTGTACAAAA+AGG | 0.277197 | 8_3:+68341453 | Msa1305040:CDS |
| GTCATAGGAACCAGGTAAAA+TGG | 0.282976 | 8_3:+68340962 | Msa1305040:intron |
| CTTTCTTGTTGCTCATGATT+GGG | 0.285427 | 8_3:+68340659 | Msa1305040:CDS |
| AAAATGCATCTTGCAGAAAA+AGG | 0.286834 | 8_3:+68340414 | Msa1305040:CDS |
| ATAGATTATACCATCTTATA+TGG | 0.288780 | 8_3:+68341709 | Msa1305040:three_prime_UTR |
| TTAACATCTTTGTCACGTTT+AGG | 0.290784 | 8_3:-68341559 | None:intergenic |
| AGCCAAGAGGGCAAGGTGTC+AGG | 0.303963 | 8_3:-68341104 | None:intergenic |
| CCCCTGACACCTTGCCCTCT+TGG | 0.306808 | 8_3:+68341102 | Msa1305040:CDS |
| CGCCATGAGTACCAGAGTTC+GGG | 0.318900 | 8_3:-68340474 | None:intergenic |
| TAACATCTTTGTCACGTTTA+GGG | 0.321271 | 8_3:-68341558 | None:intergenic |
| ACAAAGATACCAACCAATTA+AGG | 0.323697 | 8_3:-68340685 | None:intergenic |
| GTCTCTAAATTTGACAAAAC+AGG | 0.325042 | 8_3:+68341152 | Msa1305040:CDS |
| ATCCTCACAACACGGAAAAT+TGG | 0.340437 | 8_3:+68341029 | Msa1305040:CDS |
| GGCAAGGTGTCAGGGGTATC+CGG | 0.344243 | 8_3:-68341095 | None:intergenic |
| TACGTAGAAACCCAAATAAA+AGG | 0.378449 | 8_3:+68340760 | Msa1305040:CDS |
| GCTCCCGATCTCCGTGGCTT+TGG | 0.388680 | 8_3:+68340540 | Msa1305040:CDS |
| GTGCCAGTGAAATTCATTAC+AGG | 0.390811 | 8_3:+68341348 | Msa1305040:CDS |
| TTTGACAAAACAGGCTTCAC+TGG | 0.391236 | 8_3:+68341161 | Msa1305040:CDS |
| AGGGCACCGATTAGAACTTC+AGG | 0.393206 | 8_3:-68341539 | None:intergenic |
| ACAATCACTTCCTCTAAATT+CGG | 0.394533 | 8_3:-68341444 | None:intergenic |
| CTTCTTTGTTTGCAGACTCT+GGG | 0.399025 | 8_3:+68341290 | Msa1305040:intron |
| TACACAATCTTCCACTTAGT+TGG | 0.410078 | 8_3:+68340594 | Msa1305040:CDS |
| GCGCCATGAGTACCAGAGTT+CGG | 0.415510 | 8_3:-68340475 | None:intergenic |
| CTGCTTCTTGATTATTAAAG+TGG | 0.416796 | 8_3:-68341482 | None:intergenic |
| GAATCCAGTTCCGTACTTGC+CGG | 0.427409 | 8_3:-68341069 | None:intergenic |
| ACTTAAAATCATCAAGGTCT+TGG | 0.445786 | 8_3:-68341682 | None:intergenic |
| GTCTCCAAAGCCACGGAGAT+CGG | 0.447397 | 8_3:-68340544 | None:intergenic |
| CATTACAGGTGAGCTAGATA+TGG | 0.453391 | 8_3:+68341362 | Msa1305040:CDS |
| TCTCCAAAGCCACGGAGATC+GGG | 0.455811 | 8_3:-68340543 | None:intergenic |
| GGAAGATGTGCCGAATTTAG+AGG | 0.457691 | 8_3:+68341434 | Msa1305040:CDS |
| GGGAACTGAGGGCCACAATC+TGG | 0.459581 | 8_3:-68340500 | None:intergenic |
| TACTTGCCGGTGGGAAGTAT+TGG | 0.475789 | 8_3:-68341056 | None:intergenic |
| CCCACCGGCAAGTACGGAAC+TGG | 0.478584 | 8_3:+68341065 | Msa1305040:CDS |
| GCCAAGAGGGCAAGGTGTCA+GGG | 0.488708 | 8_3:-68341103 | None:intergenic |
| GATCACTTGCGTGATGTGTA+TGG | 0.490923 | 8_3:+68340789 | Msa1305040:CDS |
| TTCATGGCTTCCCCGAACTC+TGG | 0.493938 | 8_3:+68340463 | Msa1305040:CDS |
| GCAAGGTGTCAGGGGTATCC+GGG | 0.499424 | 8_3:-68341094 | None:intergenic |
| ATTCATCCTGAAGTTCTAAT+CGG | 0.501509 | 8_3:+68341533 | Msa1305040:exon |
| TTTCTTGTTGCTCATGATTG+GGG | 0.508757 | 8_3:+68340660 | Msa1305040:CDS |
| ATTTGGGTTTCTACGTAGGA+AGG | 0.512776 | 8_3:-68340754 | None:intergenic |
| TCCCCGAACTCTGGTACTCA+TGG | 0.513767 | 8_3:+68340472 | Msa1305040:CDS |
| TATACATGGAGGAGGAATGA+AGG | 0.514026 | 8_3:+68341413 | Msa1305040:CDS |
| CACAGAACAGTGGAAGTGAA+TGG | 0.515742 | 8_3:+68340387 | Msa1305040:CDS |
| GCCACGGAGATCGGGAGCTA+CGG | 0.522060 | 8_3:-68340535 | None:intergenic |
| ATTGGGGTGCCTTAATTGGT+TGG | 0.526960 | 8_3:+68340676 | Msa1305040:CDS |
| ATACTTCCCACCGGCAAGTA+CGG | 0.526961 | 8_3:+68341059 | Msa1305040:CDS |
| TTCTGTAAGCCAAGAGGGCA+AGG | 0.536914 | 8_3:-68341111 | None:intergenic |
| CTCATGGCGCCACCAGATTG+TGG | 0.538156 | 8_3:+68340488 | Msa1305040:CDS |
| CAACGATATCACCAACTAAG+TGG | 0.540284 | 8_3:-68340605 | None:intergenic |
| GAGCTACGGCGTGGTAGCCG+AGG | 0.552775 | 8_3:-68340521 | None:intergenic |
| TTGCCGGTGGGAAGTATTGG+AGG | 0.553767 | 8_3:-68341053 | None:intergenic |
| ATGCAAACTTAAAATCATCA+AGG | 0.555240 | 8_3:-68341688 | None:intergenic |
| GTGTAGTTGCTTATTGAAGT+GGG | 0.557721 | 8_3:-68340576 | None:intergenic |
| ACTAGTACAACCATATAAGA+TGG | 0.557805 | 8_3:-68341719 | None:intergenic |
| TCACCTGTAATGAATTTCAC+TGG | 0.565006 | 8_3:-68341351 | None:intergenic |
| AGAGTTCGGGGAAGCCATGA+AGG | 0.565421 | 8_3:-68340461 | None:intergenic |
| TCTGGGAGCTCACAACTCCA+TGG | 0.565482 | 8_3:+68341307 | Msa1305040:CDS |
| TCCAGTTCCGTACTTGCCGG+TGG | 0.566439 | 8_3:-68341066 | None:intergenic |
| CCATGAAGGAACAAGACTAC+TGG | 0.567142 | 8_3:-68340447 | None:intergenic |
| TGATCCATGTCATAGGAACC+AGG | 0.570861 | 8_3:+68340954 | Msa1305040:intron |
| TTTGGGTTTCTACGTAGGAA+GGG | 0.576884 | 8_3:-68340753 | None:intergenic |
| TCGTCTTCTGTAAGCCAAGA+GGG | 0.589343 | 8_3:-68341116 | None:intergenic |
| GAAGCTGAGATTGCTGAAGT+TGG | 0.590696 | 8_3:+68340984 | Msa1305040:CDS |
| GGCATGAAGGAGTATATACA+TGG | 0.590893 | 8_3:+68341399 | Msa1305040:CDS |
| TGTGTAGTTGCTTATTGAAG+TGG | 0.591667 | 8_3:-68340577 | None:intergenic |
| GAGCTCACAACTCCATGGAC+CGG | 0.592214 | 8_3:+68341312 | Msa1305040:CDS |
| AAGGAGTATATACATGGAGG+AGG | 0.594079 | 8_3:+68341405 | Msa1305040:CDS |
| GACAAAACAGGCTTCACTGG+AGG | 0.595419 | 8_3:+68341164 | Msa1305040:CDS |
| AGCTACGGCGTGGTAGCCGA+GGG | 0.595559 | 8_3:-68340520 | None:intergenic |
| GATATGGTGTACACTTCGCT+AGG | 0.598016 | 8_3:+68341378 | Msa1305040:CDS |
| ATTTAGAGACAAAGTAAGCA+AGG | 0.606314 | 8_3:-68341139 | None:intergenic |
| CGTGGTAGCCGAGGGAACTG+AGG | 0.611603 | 8_3:-68340512 | None:intergenic |
| GTGGTAGCCGAGGGAACTGA+GGG | 0.612520 | 8_3:-68340511 | None:intergenic |
| ATTGTGGCCCTCAGTTCCCT+CGG | 0.614475 | 8_3:+68340504 | Msa1305040:CDS |
| AACTGAGGGCCACAATCTGG+TGG | 0.616466 | 8_3:-68340497 | None:intergenic |
| CCAGTTCCGTACTTGCCGGT+GGG | 0.621230 | 8_3:-68341065 | None:intergenic |
| GTACACTTCGCTAGGCATGA+AGG | 0.627184 | 8_3:+68341386 | Msa1305040:CDS |
| CCAAGAGGGCAAGGTGTCAG+GGG | 0.630193 | 8_3:-68341102 | None:intergenic |
| CATCACTGTCTCCAAAGCCA+CGG | 0.638680 | 8_3:-68340551 | None:intergenic |
| ATGGACCGGAGTGAAAACCT+TGG | 0.641351 | 8_3:+68341326 | Msa1305040:CDS |
| GGTCCTCCAATACTTCCCAC+CGG | 0.646331 | 8_3:+68341050 | Msa1305040:CDS |
| GTTGCTCTCATAGACTCACT+TGG | 0.649822 | 8_3:+68340624 | Msa1305040:CDS |
| AATGAATTTCACTGGCACCA+AGG | 0.651882 | 8_3:-68341343 | None:intergenic |
| GTCGTCTTCTGTAAGCCAAG+AGG | 0.663533 | 8_3:-68341117 | None:intergenic |
| GGAGATCGGGAGCTACGGCG+TGG | 0.695350 | 8_3:-68340530 | None:intergenic |
| GCCATGAGTACCAGAGTTCG+GGG | 0.700987 | 8_3:-68340473 | None:intergenic |
| GTACGGAACTGGATTCAACC+CGG | 0.702183 | 8_3:+68341076 | Msa1305040:CDS |
| AGGCATAGAACACAGAACAG+TGG | 0.709768 | 8_3:+68340377 | Msa1305040:CDS |
| GCCGTAGCTCCCGATCTCCG+TGG | 0.712868 | 8_3:+68340534 | Msa1305040:CDS |
| GGGACTACTAAGACAAACGT+AGG | 0.722492 | 8_3:-68340733 | None:intergenic |
| ATGAAGGAGTATATACATGG+AGG | 0.728089 | 8_3:+68341402 | Msa1305040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTACTTTAATGAATGAT+TGG | + | chr8_3:68340913-68340932 | Msa1305040:intron | 15.0% |
| !!! | GATAATCAAATTTTCATTTA+GGG | + | chr8_3:68341242-68341261 | Msa1305040:intron | 15.0% |
| !!! | ATTTTACTTTAATGAATGAT+TGG | + | chr8_3:68340913-68340932 | Msa1305040:intron | 15.0% |
| !!! | GATAATCAAATTTTCATTTA+GGG | + | chr8_3:68341242-68341261 | Msa1305040:intron | 15.0% |
| !!! | TTTGAAATATGATCATATAG+AGG | - | chr8_3:68340860-68340879 | None:intergenic | 20.0% |
| !!! | GGATAATCAAATTTTCATTT+AGG | + | chr8_3:68341241-68341260 | Msa1305040:intron | 20.0% |
| !! | ATAGATTATACCATCTTATA+TGG | + | chr8_3:68341709-68341728 | Msa1305040:three_prime_UTR | 20.0% |
| !!! | TTTGAAATATGATCATATAG+AGG | - | chr8_3:68340860-68340879 | None:intergenic | 20.0% |
| !!! | GGATAATCAAATTTTCATTT+AGG | + | chr8_3:68341241-68341260 | Msa1305040:intron | 20.0% |
| !! | ATAGATTATACCATCTTATA+TGG | + | chr8_3:68341709-68341728 | Msa1305040:three_prime_UTR | 20.0% |
| !!! | TCCATCTCTTTTTTTTCTTA+CGG | - | chr8_3:68340357-68340376 | None:intergenic | 25.0% |
| ! | TAAGAAAAAAAAGAGATGGA+AGG | + | chr8_3:68340357-68340376 | Msa1305040:exon | 25.0% |
| !!! | GATCTATGATCCTTTTATTT+GGG | - | chr8_3:68340773-68340792 | None:intergenic | 25.0% |
| !! | TGATCTATGATCCTTTTATT+TGG | - | chr8_3:68340774-68340793 | None:intergenic | 25.0% |
| ! | ATGAAAATTTGATTATCCCA+AGG | - | chr8_3:68341239-68341258 | None:intergenic | 25.0% |
| ! | ATGCAAACTTAAAATCATCA+AGG | - | chr8_3:68341691-68341710 | None:intergenic | 25.0% |
| !!! | TCCATCTCTTTTTTTTCTTA+CGG | - | chr8_3:68340357-68340376 | None:intergenic | 25.0% |
| ! | TAAGAAAAAAAAGAGATGGA+AGG | + | chr8_3:68340357-68340376 | Msa1305040:exon | 25.0% |
| !!! | GATCTATGATCCTTTTATTT+GGG | - | chr8_3:68340773-68340792 | None:intergenic | 25.0% |
| !! | TGATCTATGATCCTTTTATT+TGG | - | chr8_3:68340774-68340793 | None:intergenic | 25.0% |
| ! | ATGAAAATTTGATTATCCCA+AGG | - | chr8_3:68341239-68341258 | None:intergenic | 25.0% |
| ! | ATGCAAACTTAAAATCATCA+AGG | - | chr8_3:68341691-68341710 | None:intergenic | 25.0% |
| TCCGTAAGAAAAAAAAGAGA+TGG | + | chr8_3:68340353-68340372 | Msa1305040:exon | 30.0% | |
| AAAATGCATCTTGCAGAAAA+AGG | + | chr8_3:68340414-68340433 | Msa1305040:CDS | 30.0% | |
| ACAAAGATACCAACCAATTA+AGG | - | chr8_3:68340688-68340707 | None:intergenic | 30.0% | |
| !! | TTTTATTTGGGTTTCTACGT+AGG | - | chr8_3:68340761-68340780 | None:intergenic | 30.0% |
| TACGTAGAAACCCAAATAAA+AGG | + | chr8_3:68340760-68340779 | Msa1305040:CDS | 30.0% | |
| AAATATGATCATATAGAGGC+TGG | - | chr8_3:68340856-68340875 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGATCCATGTCAT+AGG | + | chr8_3:68340947-68340966 | Msa1305040:intron | 30.0% |
| !! | GATATTTTTCAGCACATAAG+CGG | - | chr8_3:68341012-68341031 | None:intergenic | 30.0% |
| TGAAAAATATCCTCACAACA+CGG | + | chr8_3:68341021-68341040 | Msa1305040:CDS | 30.0% | |
| ATTTAGAGACAAAGTAAGCA+AGG | - | chr8_3:68341142-68341161 | None:intergenic | 30.0% | |
| GTCTCTAAATTTGACAAAAC+AGG | + | chr8_3:68341152-68341171 | Msa1305040:CDS | 30.0% | |
| ACAATCACTTCCTCTAAATT+CGG | - | chr8_3:68341447-68341466 | None:intergenic | 30.0% | |
| CTGCTTCTTGATTATTAAAG+TGG | - | chr8_3:68341485-68341504 | None:intergenic | 30.0% | |
| ! | ATTCATCCTGAAGTTCTAAT+CGG | + | chr8_3:68341533-68341552 | Msa1305040:exon | 30.0% |
| TAACATCTTTGTCACGTTTA+GGG | - | chr8_3:68341561-68341580 | None:intergenic | 30.0% | |
| TTAACATCTTTGTCACGTTT+AGG | - | chr8_3:68341562-68341581 | None:intergenic | 30.0% | |
| ACTTAAAATCATCAAGGTCT+TGG | - | chr8_3:68341685-68341704 | None:intergenic | 30.0% | |
| ACTAGTACAACCATATAAGA+TGG | - | chr8_3:68341722-68341741 | None:intergenic | 30.0% | |
| TCCGTAAGAAAAAAAAGAGA+TGG | + | chr8_3:68340353-68340372 | Msa1305040:exon | 30.0% | |
| AAAATGCATCTTGCAGAAAA+AGG | + | chr8_3:68340414-68340433 | Msa1305040:CDS | 30.0% | |
| ACAAAGATACCAACCAATTA+AGG | - | chr8_3:68340688-68340707 | None:intergenic | 30.0% | |
| !! | TTTTATTTGGGTTTCTACGT+AGG | - | chr8_3:68340761-68340780 | None:intergenic | 30.0% |
| TACGTAGAAACCCAAATAAA+AGG | + | chr8_3:68340760-68340779 | Msa1305040:CDS | 30.0% | |
| AAATATGATCATATAGAGGC+TGG | - | chr8_3:68340856-68340875 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTGATCCATGTCAT+AGG | + | chr8_3:68340947-68340966 | Msa1305040:intron | 30.0% |
| !! | GATATTTTTCAGCACATAAG+CGG | - | chr8_3:68341012-68341031 | None:intergenic | 30.0% |
| TGAAAAATATCCTCACAACA+CGG | + | chr8_3:68341021-68341040 | Msa1305040:CDS | 30.0% | |
| ATTTAGAGACAAAGTAAGCA+AGG | - | chr8_3:68341142-68341161 | None:intergenic | 30.0% | |
| GTCTCTAAATTTGACAAAAC+AGG | + | chr8_3:68341152-68341171 | Msa1305040:CDS | 30.0% | |
| ACAATCACTTCCTCTAAATT+CGG | - | chr8_3:68341447-68341466 | None:intergenic | 30.0% | |
| CTGCTTCTTGATTATTAAAG+TGG | - | chr8_3:68341485-68341504 | None:intergenic | 30.0% | |
| ! | ATTCATCCTGAAGTTCTAAT+CGG | + | chr8_3:68341533-68341552 | Msa1305040:exon | 30.0% |
| TAACATCTTTGTCACGTTTA+GGG | - | chr8_3:68341561-68341580 | None:intergenic | 30.0% | |
| TTAACATCTTTGTCACGTTT+AGG | - | chr8_3:68341562-68341581 | None:intergenic | 30.0% | |
| ACTTAAAATCATCAAGGTCT+TGG | - | chr8_3:68341685-68341704 | None:intergenic | 30.0% | |
| ACTAGTACAACCATATAAGA+TGG | - | chr8_3:68341722-68341741 | None:intergenic | 30.0% | |
| TCTTGCAGAAAAAGGAAAAG+AGG | + | chr8_3:68340422-68340441 | Msa1305040:CDS | 35.0% | |
| CTTGCAGAAAAAGGAAAAGA+GGG | + | chr8_3:68340423-68340442 | Msa1305040:CDS | 35.0% | |
| GTGTAGTTGCTTATTGAAGT+GGG | - | chr8_3:68340579-68340598 | None:intergenic | 35.0% | |
| TGTGTAGTTGCTTATTGAAG+TGG | - | chr8_3:68340580-68340599 | None:intergenic | 35.0% | |
| TACACAATCTTCCACTTAGT+TGG | + | chr8_3:68340594-68340613 | Msa1305040:CDS | 35.0% | |
| TCTTTCTTGTTGCTCATGAT+TGG | + | chr8_3:68340658-68340677 | Msa1305040:CDS | 35.0% | |
| CTTTCTTGTTGCTCATGATT+GGG | + | chr8_3:68340659-68340678 | Msa1305040:CDS | 35.0% | |
| TTTCTTGTTGCTCATGATTG+GGG | + | chr8_3:68340660-68340679 | Msa1305040:CDS | 35.0% | |
| CTACTATATCTGCAGATTTC+AGG | + | chr8_3:68340818-68340837 | Msa1305040:CDS | 35.0% | |
| TCACCTGTAATGAATTTCAC+TGG | - | chr8_3:68341354-68341373 | None:intergenic | 35.0% | |
| ! | ATGAAGGAGTATATACATGG+AGG | + | chr8_3:68341402-68341421 | Msa1305040:CDS | 35.0% |
| GAGGAAGTGATTGTACAAAA+AGG | + | chr8_3:68341453-68341472 | Msa1305040:CDS | 35.0% | |
| AGTGATTGTACAAAAAGGAG+TGG | + | chr8_3:68341458-68341477 | Msa1305040:CDS | 35.0% | |
| GTGATTGTACAAAAAGGAGT+GGG | + | chr8_3:68341459-68341478 | Msa1305040:CDS | 35.0% | |
| TCTTGCAGAAAAAGGAAAAG+AGG | + | chr8_3:68340422-68340441 | Msa1305040:CDS | 35.0% | |
| CTTGCAGAAAAAGGAAAAGA+GGG | + | chr8_3:68340423-68340442 | Msa1305040:CDS | 35.0% | |
| GTGTAGTTGCTTATTGAAGT+GGG | - | chr8_3:68340579-68340598 | None:intergenic | 35.0% | |
| TGTGTAGTTGCTTATTGAAG+TGG | - | chr8_3:68340580-68340599 | None:intergenic | 35.0% | |
| TACACAATCTTCCACTTAGT+TGG | + | chr8_3:68340594-68340613 | Msa1305040:CDS | 35.0% | |
| TCTTTCTTGTTGCTCATGAT+TGG | + | chr8_3:68340658-68340677 | Msa1305040:CDS | 35.0% | |
| CTTTCTTGTTGCTCATGATT+GGG | + | chr8_3:68340659-68340678 | Msa1305040:CDS | 35.0% | |
| TTTCTTGTTGCTCATGATTG+GGG | + | chr8_3:68340660-68340679 | Msa1305040:CDS | 35.0% | |
| CTACTATATCTGCAGATTTC+AGG | + | chr8_3:68340818-68340837 | Msa1305040:CDS | 35.0% | |
| TCACCTGTAATGAATTTCAC+TGG | - | chr8_3:68341354-68341373 | None:intergenic | 35.0% | |
| ! | ATGAAGGAGTATATACATGG+AGG | + | chr8_3:68341402-68341421 | Msa1305040:CDS | 35.0% |
| GAGGAAGTGATTGTACAAAA+AGG | + | chr8_3:68341453-68341472 | Msa1305040:CDS | 35.0% | |
| AGTGATTGTACAAAAAGGAG+TGG | + | chr8_3:68341458-68341477 | Msa1305040:CDS | 35.0% | |
| GTGATTGTACAAAAAGGAGT+GGG | + | chr8_3:68341459-68341478 | Msa1305040:CDS | 35.0% | |
| CAACGATATCACCAACTAAG+TGG | - | chr8_3:68340608-68340627 | None:intergenic | 40.0% | |
| ! | TTTGGGTTTCTACGTAGGAA+GGG | - | chr8_3:68340756-68340775 | None:intergenic | 40.0% |
| ! | ATTTGGGTTTCTACGTAGGA+AGG | - | chr8_3:68340757-68340776 | None:intergenic | 40.0% |
| TTTACCTGGTTCCTATGACA+TGG | - | chr8_3:68340961-68340980 | None:intergenic | 40.0% | |
| GTCATAGGAACCAGGTAAAA+TGG | + | chr8_3:68340962-68340981 | Msa1305040:intron | 40.0% | |
| ! | ATCTCAGCTTCCATTTTACC+TGG | - | chr8_3:68340975-68340994 | None:intergenic | 40.0% |
| ATCCTCACAACACGGAAAAT+TGG | + | chr8_3:68341029-68341048 | Msa1305040:CDS | 40.0% | |
| TTTGACAAAACAGGCTTCAC+TGG | + | chr8_3:68341161-68341180 | Msa1305040:CDS | 40.0% | |
| ACAAACAATCAGAGAGCTAC+AGG | - | chr8_3:68341214-68341233 | None:intergenic | 40.0% | |
| TCTCTGATTGTTTGTCTCCT+TGG | + | chr8_3:68341219-68341238 | Msa1305040:intron | 40.0% | |
| CTCTGATTGTTTGTCTCCTT+GGG | + | chr8_3:68341220-68341239 | Msa1305040:intron | 40.0% | |
| ! | CTTCTTTGTTTGCAGACTCT+GGG | + | chr8_3:68341290-68341309 | Msa1305040:intron | 40.0% |
| AATGAATTTCACTGGCACCA+AGG | - | chr8_3:68341346-68341365 | None:intergenic | 40.0% | |
| GTGCCAGTGAAATTCATTAC+AGG | + | chr8_3:68341348-68341367 | Msa1305040:CDS | 40.0% | |
| CATTACAGGTGAGCTAGATA+TGG | + | chr8_3:68341362-68341381 | Msa1305040:CDS | 40.0% | |
| ! | GGCATGAAGGAGTATATACA+TGG | + | chr8_3:68341399-68341418 | Msa1305040:CDS | 40.0% |
| ! | AAGGAGTATATACATGGAGG+AGG | + | chr8_3:68341405-68341424 | Msa1305040:CDS | 40.0% |
| TATACATGGAGGAGGAATGA+AGG | + | chr8_3:68341413-68341432 | Msa1305040:CDS | 40.0% | |
| CAACGATATCACCAACTAAG+TGG | - | chr8_3:68340608-68340627 | None:intergenic | 40.0% | |
| ! | TTTGGGTTTCTACGTAGGAA+GGG | - | chr8_3:68340756-68340775 | None:intergenic | 40.0% |
| ! | ATTTGGGTTTCTACGTAGGA+AGG | - | chr8_3:68340757-68340776 | None:intergenic | 40.0% |
| TTTACCTGGTTCCTATGACA+TGG | - | chr8_3:68340961-68340980 | None:intergenic | 40.0% | |
| GTCATAGGAACCAGGTAAAA+TGG | + | chr8_3:68340962-68340981 | Msa1305040:intron | 40.0% | |
| ! | ATCTCAGCTTCCATTTTACC+TGG | - | chr8_3:68340975-68340994 | None:intergenic | 40.0% |
| ATCCTCACAACACGGAAAAT+TGG | + | chr8_3:68341029-68341048 | Msa1305040:CDS | 40.0% | |
| TTTGACAAAACAGGCTTCAC+TGG | + | chr8_3:68341161-68341180 | Msa1305040:CDS | 40.0% | |
| ACAAACAATCAGAGAGCTAC+AGG | - | chr8_3:68341214-68341233 | None:intergenic | 40.0% | |
| TCTCTGATTGTTTGTCTCCT+TGG | + | chr8_3:68341219-68341238 | Msa1305040:intron | 40.0% | |
| CTCTGATTGTTTGTCTCCTT+GGG | + | chr8_3:68341220-68341239 | Msa1305040:intron | 40.0% | |
| ! | CTTCTTTGTTTGCAGACTCT+GGG | + | chr8_3:68341290-68341309 | Msa1305040:intron | 40.0% |
| AATGAATTTCACTGGCACCA+AGG | - | chr8_3:68341346-68341365 | None:intergenic | 40.0% | |
| GTGCCAGTGAAATTCATTAC+AGG | + | chr8_3:68341348-68341367 | Msa1305040:CDS | 40.0% | |
| CATTACAGGTGAGCTAGATA+TGG | + | chr8_3:68341362-68341381 | Msa1305040:CDS | 40.0% | |
| ! | GGCATGAAGGAGTATATACA+TGG | + | chr8_3:68341399-68341418 | Msa1305040:CDS | 40.0% |
| ! | AAGGAGTATATACATGGAGG+AGG | + | chr8_3:68341405-68341424 | Msa1305040:CDS | 40.0% |
| TATACATGGAGGAGGAATGA+AGG | + | chr8_3:68341413-68341432 | Msa1305040:CDS | 40.0% | |
| AGGCATAGAACACAGAACAG+TGG | + | chr8_3:68340377-68340396 | Msa1305040:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | chr8_3:68340387-68340406 | Msa1305040:CDS | 45.0% | |
| CCATGAAGGAACAAGACTAC+TGG | - | chr8_3:68340450-68340469 | None:intergenic | 45.0% | |
| !! | CCAGTAGTCTTGTTCCTTCA+TGG | + | chr8_3:68340447-68340466 | Msa1305040:CDS | 45.0% |
| GTTGCTCTCATAGACTCACT+TGG | + | chr8_3:68340624-68340643 | Msa1305040:CDS | 45.0% | |
| ! | CATGATTGGGGTGCCTTAAT+TGG | + | chr8_3:68340672-68340691 | Msa1305040:CDS | 45.0% |
| ! | ATTGGGGTGCCTTAATTGGT+TGG | + | chr8_3:68340676-68340695 | Msa1305040:CDS | 45.0% |
| ! | ACGTAGGCTTTGACTCTTTC+AGG | - | chr8_3:68340720-68340739 | None:intergenic | 45.0% |
| GGGACTACTAAGACAAACGT+AGG | - | chr8_3:68340736-68340755 | None:intergenic | 45.0% | |
| GATCACTTGCGTGATGTGTA+TGG | + | chr8_3:68340789-68340808 | Msa1305040:CDS | 45.0% | |
| TGATCCATGTCATAGGAACC+AGG | + | chr8_3:68340954-68340973 | Msa1305040:intron | 45.0% | |
| GAAGCTGAGATTGCTGAAGT+TGG | + | chr8_3:68340984-68341003 | Msa1305040:CDS | 45.0% | |
| ! | GACCAATTTTCCGTGTTGTG+AGG | - | chr8_3:68341034-68341053 | None:intergenic | 45.0% |
| TCGTCTTCTGTAAGCCAAGA+GGG | - | chr8_3:68341119-68341138 | None:intergenic | 45.0% | |
| ! | GCTTCTTTGTTTGCAGACTC+TGG | + | chr8_3:68341289-68341308 | Msa1305040:intron | 45.0% |
| GATATGGTGTACACTTCGCT+AGG | + | chr8_3:68341378-68341397 | Msa1305040:CDS | 45.0% | |
| GGAAGATGTGCCGAATTTAG+AGG | + | chr8_3:68341434-68341453 | Msa1305040:CDS | 45.0% | |
| AGGCATAGAACACAGAACAG+TGG | + | chr8_3:68340377-68340396 | Msa1305040:CDS | 45.0% | |
| CACAGAACAGTGGAAGTGAA+TGG | + | chr8_3:68340387-68340406 | Msa1305040:CDS | 45.0% | |
| CCATGAAGGAACAAGACTAC+TGG | - | chr8_3:68340450-68340469 | None:intergenic | 45.0% | |
| !! | CCAGTAGTCTTGTTCCTTCA+TGG | + | chr8_3:68340447-68340466 | Msa1305040:CDS | 45.0% |
| GTTGCTCTCATAGACTCACT+TGG | + | chr8_3:68340624-68340643 | Msa1305040:CDS | 45.0% | |
| ! | CATGATTGGGGTGCCTTAAT+TGG | + | chr8_3:68340672-68340691 | Msa1305040:CDS | 45.0% |
| ! | ATTGGGGTGCCTTAATTGGT+TGG | + | chr8_3:68340676-68340695 | Msa1305040:CDS | 45.0% |
| ! | ACGTAGGCTTTGACTCTTTC+AGG | - | chr8_3:68340720-68340739 | None:intergenic | 45.0% |
| GGGACTACTAAGACAAACGT+AGG | - | chr8_3:68340736-68340755 | None:intergenic | 45.0% | |
| GATCACTTGCGTGATGTGTA+TGG | + | chr8_3:68340789-68340808 | Msa1305040:CDS | 45.0% | |
| TGATCCATGTCATAGGAACC+AGG | + | chr8_3:68340954-68340973 | Msa1305040:intron | 45.0% | |
| GAAGCTGAGATTGCTGAAGT+TGG | + | chr8_3:68340984-68341003 | Msa1305040:CDS | 45.0% | |
| ! | GACCAATTTTCCGTGTTGTG+AGG | - | chr8_3:68341034-68341053 | None:intergenic | 45.0% |
| TCGTCTTCTGTAAGCCAAGA+GGG | - | chr8_3:68341119-68341138 | None:intergenic | 45.0% | |
| ! | GCTTCTTTGTTTGCAGACTC+TGG | + | chr8_3:68341289-68341308 | Msa1305040:intron | 45.0% |
| GATATGGTGTACACTTCGCT+AGG | + | chr8_3:68341378-68341397 | Msa1305040:CDS | 45.0% | |
| GGAAGATGTGCCGAATTTAG+AGG | + | chr8_3:68341434-68341453 | Msa1305040:CDS | 45.0% | |
| CATCACTGTCTCCAAAGCCA+CGG | - | chr8_3:68340554-68340573 | None:intergenic | 50.0% | |
| ! | TACTTGCCGGTGGGAAGTAT+TGG | - | chr8_3:68341059-68341078 | None:intergenic | 50.0% |
| ATACTTCCCACCGGCAAGTA+CGG | + | chr8_3:68341059-68341078 | Msa1305040:CDS | 50.0% | |
| GAATCCAGTTCCGTACTTGC+CGG | - | chr8_3:68341072-68341091 | None:intergenic | 50.0% | |
| GTACGGAACTGGATTCAACC+CGG | + | chr8_3:68341076-68341095 | Msa1305040:CDS | 50.0% | |
| TTCTGTAAGCCAAGAGGGCA+AGG | - | chr8_3:68341114-68341133 | None:intergenic | 50.0% | |
| GTCGTCTTCTGTAAGCCAAG+AGG | - | chr8_3:68341120-68341139 | None:intergenic | 50.0% | |
| GACAAAACAGGCTTCACTGG+AGG | + | chr8_3:68341164-68341183 | Msa1305040:CDS | 50.0% | |
| ! | AAGGTTTTCACTCCGGTCCA+TGG | - | chr8_3:68341327-68341346 | None:intergenic | 50.0% |
| ATGGACCGGAGTGAAAACCT+TGG | + | chr8_3:68341326-68341345 | Msa1305040:CDS | 50.0% | |
| ! | TGGCACCAAGGTTTTCACTC+CGG | - | chr8_3:68341334-68341353 | None:intergenic | 50.0% |
| GTACACTTCGCTAGGCATGA+AGG | + | chr8_3:68341386-68341405 | Msa1305040:CDS | 50.0% | |
| !! | AGGGCACCGATTAGAACTTC+AGG | - | chr8_3:68341542-68341561 | None:intergenic | 50.0% |
| CATCACTGTCTCCAAAGCCA+CGG | - | chr8_3:68340554-68340573 | None:intergenic | 50.0% | |
| ! | TACTTGCCGGTGGGAAGTAT+TGG | - | chr8_3:68341059-68341078 | None:intergenic | 50.0% |
| ATACTTCCCACCGGCAAGTA+CGG | + | chr8_3:68341059-68341078 | Msa1305040:CDS | 50.0% | |
| GAATCCAGTTCCGTACTTGC+CGG | - | chr8_3:68341072-68341091 | None:intergenic | 50.0% | |
| GTACGGAACTGGATTCAACC+CGG | + | chr8_3:68341076-68341095 | Msa1305040:CDS | 50.0% | |
| TTCTGTAAGCCAAGAGGGCA+AGG | - | chr8_3:68341114-68341133 | None:intergenic | 50.0% | |
| GTCGTCTTCTGTAAGCCAAG+AGG | - | chr8_3:68341120-68341139 | None:intergenic | 50.0% | |
| GACAAAACAGGCTTCACTGG+AGG | + | chr8_3:68341164-68341183 | Msa1305040:CDS | 50.0% | |
| ! | AAGGTTTTCACTCCGGTCCA+TGG | - | chr8_3:68341327-68341346 | None:intergenic | 50.0% |
| ATGGACCGGAGTGAAAACCT+TGG | + | chr8_3:68341326-68341345 | Msa1305040:CDS | 50.0% | |
| ! | TGGCACCAAGGTTTTCACTC+CGG | - | chr8_3:68341334-68341353 | None:intergenic | 50.0% |
| GTACACTTCGCTAGGCATGA+AGG | + | chr8_3:68341386-68341405 | Msa1305040:CDS | 50.0% | |
| !! | AGGGCACCGATTAGAACTTC+AGG | - | chr8_3:68341542-68341561 | None:intergenic | 50.0% |
| AGAGTTCGGGGAAGCCATGA+AGG | - | chr8_3:68340464-68340483 | None:intergenic | 55.0% | |
| TTCATGGCTTCCCCGAACTC+TGG | + | chr8_3:68340463-68340482 | Msa1305040:CDS | 55.0% | |
| TCCCCGAACTCTGGTACTCA+TGG | + | chr8_3:68340472-68340491 | Msa1305040:CDS | 55.0% | |
| GCCATGAGTACCAGAGTTCG+GGG | - | chr8_3:68340476-68340495 | None:intergenic | 55.0% | |
| CGCCATGAGTACCAGAGTTC+GGG | - | chr8_3:68340477-68340496 | None:intergenic | 55.0% | |
| GCGCCATGAGTACCAGAGTT+CGG | - | chr8_3:68340478-68340497 | None:intergenic | 55.0% | |
| AACTGAGGGCCACAATCTGG+TGG | - | chr8_3:68340500-68340519 | None:intergenic | 55.0% | |
| ATTGTGGCCCTCAGTTCCCT+CGG | + | chr8_3:68340504-68340523 | Msa1305040:CDS | 55.0% | |
| TCTCCAAAGCCACGGAGATC+GGG | - | chr8_3:68340546-68340565 | None:intergenic | 55.0% | |
| GTCTCCAAAGCCACGGAGAT+CGG | - | chr8_3:68340547-68340566 | None:intergenic | 55.0% | |
| GGTCCTCCAATACTTCCCAC+CGG | + | chr8_3:68341050-68341069 | Msa1305040:CDS | 55.0% | |
| !! | TTGCCGGTGGGAAGTATTGG+AGG | - | chr8_3:68341056-68341075 | None:intergenic | 55.0% |
| TCTGGGAGCTCACAACTCCA+TGG | + | chr8_3:68341307-68341326 | Msa1305040:CDS | 55.0% | |
| GAGCTCACAACTCCATGGAC+CGG | + | chr8_3:68341312-68341331 | Msa1305040:CDS | 55.0% | |
| AGAGTTCGGGGAAGCCATGA+AGG | - | chr8_3:68340464-68340483 | None:intergenic | 55.0% | |
| TTCATGGCTTCCCCGAACTC+TGG | + | chr8_3:68340463-68340482 | Msa1305040:CDS | 55.0% | |
| TCCCCGAACTCTGGTACTCA+TGG | + | chr8_3:68340472-68340491 | Msa1305040:CDS | 55.0% | |
| GCCATGAGTACCAGAGTTCG+GGG | - | chr8_3:68340476-68340495 | None:intergenic | 55.0% | |
| CGCCATGAGTACCAGAGTTC+GGG | - | chr8_3:68340477-68340496 | None:intergenic | 55.0% | |
| GCGCCATGAGTACCAGAGTT+CGG | - | chr8_3:68340478-68340497 | None:intergenic | 55.0% | |
| AACTGAGGGCCACAATCTGG+TGG | - | chr8_3:68340500-68340519 | None:intergenic | 55.0% | |
| ATTGTGGCCCTCAGTTCCCT+CGG | + | chr8_3:68340504-68340523 | Msa1305040:CDS | 55.0% | |
| TCTCCAAAGCCACGGAGATC+GGG | - | chr8_3:68340546-68340565 | None:intergenic | 55.0% | |
| GTCTCCAAAGCCACGGAGAT+CGG | - | chr8_3:68340547-68340566 | None:intergenic | 55.0% | |
| GGTCCTCCAATACTTCCCAC+CGG | + | chr8_3:68341050-68341069 | Msa1305040:CDS | 55.0% | |
| !! | TTGCCGGTGGGAAGTATTGG+AGG | - | chr8_3:68341056-68341075 | None:intergenic | 55.0% |
| TCTGGGAGCTCACAACTCCA+TGG | + | chr8_3:68341307-68341326 | Msa1305040:CDS | 55.0% | |
| GAGCTCACAACTCCATGGAC+CGG | + | chr8_3:68341312-68341331 | Msa1305040:CDS | 55.0% | |
| CTCATGGCGCCACCAGATTG+TGG | + | chr8_3:68340488-68340507 | Msa1305040:CDS | 60.0% | |
| GGGAACTGAGGGCCACAATC+TGG | - | chr8_3:68340503-68340522 | None:intergenic | 60.0% | |
| GTGGTAGCCGAGGGAACTGA+GGG | - | chr8_3:68340514-68340533 | None:intergenic | 60.0% | |
| CCAGTTCCGTACTTGCCGGT+GGG | - | chr8_3:68341068-68341087 | None:intergenic | 60.0% | |
| TCCAGTTCCGTACTTGCCGG+TGG | - | chr8_3:68341069-68341088 | None:intergenic | 60.0% | |
| !! | GCAAGGTGTCAGGGGTATCC+GGG | - | chr8_3:68341097-68341116 | None:intergenic | 60.0% |
| !! | GGCAAGGTGTCAGGGGTATC+CGG | - | chr8_3:68341098-68341117 | None:intergenic | 60.0% |
| ! | CCAAGAGGGCAAGGTGTCAG+GGG | - | chr8_3:68341105-68341124 | None:intergenic | 60.0% |
| ! | GCCAAGAGGGCAAGGTGTCA+GGG | - | chr8_3:68341106-68341125 | None:intergenic | 60.0% |
| ! | AGCCAAGAGGGCAAGGTGTC+AGG | - | chr8_3:68341107-68341126 | None:intergenic | 60.0% |
| CTCATGGCGCCACCAGATTG+TGG | + | chr8_3:68340488-68340507 | Msa1305040:CDS | 60.0% | |
| GGGAACTGAGGGCCACAATC+TGG | - | chr8_3:68340503-68340522 | None:intergenic | 60.0% | |
| GTGGTAGCCGAGGGAACTGA+GGG | - | chr8_3:68340514-68340533 | None:intergenic | 60.0% | |
| CCAGTTCCGTACTTGCCGGT+GGG | - | chr8_3:68341068-68341087 | None:intergenic | 60.0% | |
| TCCAGTTCCGTACTTGCCGG+TGG | - | chr8_3:68341069-68341088 | None:intergenic | 60.0% | |
| !! | GCAAGGTGTCAGGGGTATCC+GGG | - | chr8_3:68341097-68341116 | None:intergenic | 60.0% |
| !! | GGCAAGGTGTCAGGGGTATC+CGG | - | chr8_3:68341098-68341117 | None:intergenic | 60.0% |
| ! | CCAAGAGGGCAAGGTGTCAG+GGG | - | chr8_3:68341105-68341124 | None:intergenic | 60.0% |
| ! | GCCAAGAGGGCAAGGTGTCA+GGG | - | chr8_3:68341106-68341125 | None:intergenic | 60.0% |
| ! | AGCCAAGAGGGCAAGGTGTC+AGG | - | chr8_3:68341107-68341126 | None:intergenic | 60.0% |
| CGTGGTAGCCGAGGGAACTG+AGG | - | chr8_3:68340515-68340534 | None:intergenic | 65.0% | |
| AGCTACGGCGTGGTAGCCGA+GGG | - | chr8_3:68340523-68340542 | None:intergenic | 65.0% | |
| GCCACGGAGATCGGGAGCTA+CGG | - | chr8_3:68340538-68340557 | None:intergenic | 65.0% | |
| GCTCCCGATCTCCGTGGCTT+TGG | + | chr8_3:68340540-68340559 | Msa1305040:CDS | 65.0% | |
| CCCACCGGCAAGTACGGAAC+TGG | + | chr8_3:68341065-68341084 | Msa1305040:CDS | 65.0% | |
| CCCCTGACACCTTGCCCTCT+TGG | + | chr8_3:68341102-68341121 | Msa1305040:CDS | 65.0% | |
| CGTGGTAGCCGAGGGAACTG+AGG | - | chr8_3:68340515-68340534 | None:intergenic | 65.0% | |
| AGCTACGGCGTGGTAGCCGA+GGG | - | chr8_3:68340523-68340542 | None:intergenic | 65.0% | |
| GCCACGGAGATCGGGAGCTA+CGG | - | chr8_3:68340538-68340557 | None:intergenic | 65.0% | |
| GCTCCCGATCTCCGTGGCTT+TGG | + | chr8_3:68340540-68340559 | Msa1305040:CDS | 65.0% | |
| CCCACCGGCAAGTACGGAAC+TGG | + | chr8_3:68341065-68341084 | Msa1305040:CDS | 65.0% | |
| CCCCTGACACCTTGCCCTCT+TGG | + | chr8_3:68341102-68341121 | Msa1305040:CDS | 65.0% | |
| GAGCTACGGCGTGGTAGCCG+AGG | - | chr8_3:68340524-68340543 | None:intergenic | 70.0% | |
| GGAGATCGGGAGCTACGGCG+TGG | - | chr8_3:68340533-68340552 | None:intergenic | 70.0% | |
| GCCGTAGCTCCCGATCTCCG+TGG | + | chr8_3:68340534-68340553 | Msa1305040:CDS | 70.0% | |
| GAGCTACGGCGTGGTAGCCG+AGG | - | chr8_3:68340524-68340543 | None:intergenic | 70.0% | |
| GGAGATCGGGAGCTACGGCG+TGG | - | chr8_3:68340533-68340552 | None:intergenic | 70.0% | |
| GCCGTAGCTCCCGATCTCCG+TGG | + | chr8_3:68340534-68340553 | Msa1305040:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 68340346 | 68341851 | 68340346 | ID=Msa1305040;Name=Msa1305040 |
| chr8_3 | mRNA | 68340346 | 68341851 | 68340346 | ID=Msa1305040-mRNA-1;Parent=Msa1305040;Name=Msa1305040-mRNA-1;_AED=0.06;_eAED=0.06;_QI=26|1|1|1|1|1|3|300|319 |
| chr8_3 | exon | 68340346 | 68340839 | 68340346 | ID=Msa1305040-mRNA-1:exon:21142;Parent=Msa1305040-mRNA-1 |
| chr8_3 | exon | 68340969 | 68341213 | 68340969 | ID=Msa1305040-mRNA-1:exon:21143;Parent=Msa1305040-mRNA-1 |
| chr8_3 | exon | 68341305 | 68341851 | 68341305 | ID=Msa1305040-mRNA-1:exon:21144;Parent=Msa1305040-mRNA-1 |
| chr8_3 | five_prime_UTR | 68340346 | 68340371 | 68340346 | ID=Msa1305040-mRNA-1:five_prime_utr;Parent=Msa1305040-mRNA-1 |
| chr8_3 | CDS | 68340372 | 68340839 | 68340372 | ID=Msa1305040-mRNA-1:cds;Parent=Msa1305040-mRNA-1 |
| chr8_3 | CDS | 68340969 | 68341213 | 68340969 | ID=Msa1305040-mRNA-1:cds;Parent=Msa1305040-mRNA-1 |
| chr8_3 | CDS | 68341305 | 68341551 | 68341305 | ID=Msa1305040-mRNA-1:cds;Parent=Msa1305040-mRNA-1 |
| chr8_3 | three_prime_UTR | 68341552 | 68341851 | 68341552 | ID=Msa1305040-mRNA-1:three_prime_utr;Parent=Msa1305040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
