AlfalfaGEDB | Msa1039480

M. sativa cultivar zhongmu-4 / Msa1039480

KEGG: K08726
GO: GO:0000287 GO:0001676 GO:0003008 GO:0003013 GO:0003018 GO:0003674 GO:0003824 GO:0004301 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0005829 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006633 GO:0006690 GO:0006725 GO:0006793 GO:0006796 GO:0006805 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006886 GO:0006950 GO:0006952 GO:0006954 GO:0006996 GO:0007031 GO:0008015 GO:0008104 GO:0008150 GO:0008152 GO:0008217 GO:0008610 GO:0009056 GO:0009058 GO:0009410 GO:0009636 GO:0009810 GO:0009893 GO:0009987 GO:0010468 GO:0010604 GO:0010628 GO:0015031 GO:0015643 GO:0015833 GO:0016043 GO:0016053 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0017144 GO:0018904 GO:0019216 GO:0019218 GO:0019222 GO:0019369 GO:0019373 GO:0019439 GO:0019725 GO:0019752 GO:0030003 GO:0030258 GO:0031907 GO:0031974 GO:0032501 GO:0032787 GO:0033036 GO:0033365 GO:0033559 GO:0034613 GO:0035150 GO:0035296 GO:0042221 GO:0042577 GO:0042578 GO:0042579 GO:0042592 GO:0042632 GO:0042759 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046272 GO:0046394 GO:0046483 GO:0046839 GO:0046872 GO:0046907 GO:0046983 GO:0048518 GO:0048878 GO:0050789 GO:0050801 GO:0050880 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055088 GO:0055092 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070887 GO:0071466 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072330 GO:0072503 GO:0072507 GO:0072593 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0090066 GO:0090181 GO:0097176 GO:0097746 GO:0097755 GO:0098771 GO:1900673 GO:1901360 GO:1901361 GO:1901568 GO:1901575 GO:1901576
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1039480	GAU11476.1	88.050	159	19	0	1	159	160	318	2.28e-96	291

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1039480	sp\|I6YGS0\|EPHA_MYCTU	34.188	117	67	2	42	156	208	316	2.89e-16	77.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1039480	Q8LPE6	86.792	159	21	0	1	159	117	275	1.93e-95	286

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0256290	Msa1039480	0.823830	1.121498e-53	-8.615850e-47
Msa0260120	Msa1039480	0.825842	3.759171e-54	-8.615850e-47
Msa0575990	Msa1039480	0.863840	1.867498e-64	-8.615850e-47
Msa0576100	Msa1039480	0.859210	4.840764e-63	-8.615850e-47
Msa0621940	Msa1039480	0.890792	7.147026e-74	-8.615850e-47
Msa0622010	Msa1039480	0.881865	1.681521e-70	-8.615850e-47
Msa0689770	Msa1039480	0.805613	1.226751e-49	-8.615850e-47
Msa1039480	Msa1085590	0.889921	1.570365e-73	-8.615850e-47
Msa1039480	Msa1305040	0.884753	1.464221e-71	-8.615850e-47
Msa1039480	Msa1306720	0.808297	3.319445e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1039480	MtrunA17_Chr7g0272181	83.648	159	26	0	1	159	161	319	2.56e-96	281
Msa1039480	MtrunA17_Chr7g0272531	83.648	159	26	0	1	159	191	349	6.01e-96	281
Msa1039480	MtrunA17_Chr7g0272481	84.277	159	25	0	1	159	161	319	2.15e-95	278
Msa1039480	MtrunA17_Chr7g0272501	82.390	159	28	0	1	159	161	319	8.71e-94	274
Msa1039480	MtrunA17_Chr7g0272171	81.132	159	30	0	1	159	161	319	3.13e-92	270
Msa1039480	MtrunA17_Chr4g0000111	68.553	159	49	1	2	159	164	322	1.46e-77	233
Msa1039480	MtrunA17_Chr7g0272431	60.870	161	59	2	1	159	161	319	4.50e-65	201
Msa1039480	MtrunA17_Chr7g0272441	62.112	161	57	2	1	159	161	319	7.66e-65	201
Msa1039480	MtrunA17_Chr7g0272451	59.748	159	61	2	1	159	161	316	1.73e-63	197
Msa1039480	MtrunA17_Chr4g0067581	58.491	159	65	1	1	159	198	355	1.39e-59	188

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1039480	AT3G05600.1	54.658	161	71	2	1	159	164	324	3.14e-58	184
Msa1039480	AT4G02340.1	50.311	161	74	3	1	159	160	316	2.60e-50	164
Msa1039480	AT4G15960.1	51.572	159	76	1	1	159	217	374	2.07e-49	163
Msa1039480	AT2G26740.1	55.975	159	69	1	1	159	164	321	1.01e-45	152
Msa1039480	AT2G26750.1	54.717	159	71	1	1	159	163	320	5.55e-44	147
Msa1039480	AT4G15955.3	54.167	120	55	0	40	159	185	304	8.86e-40	136
Msa1039480	AT3G51000.1	37.126	167	86	4	2	159	163	319	4.54e-28	106
Msa1039480	AT3G05600.2	48.750	80	39	2	1	78	164	243	1.32e-18	79.7

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Find 94 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCATATAGCAGAAAA+AGG	0.330788	7_1:-76716593	Msa1039480:five_prime_UTR
AACTGAGGGCCACAATCTGG+TGG	0.616466	7_1:+76716510	None:intergenic
AAGGAGTATATACATGGAGG+AGG	0.594079	7_1:-76715600	Msa1039480:CDS
AATGAATTTCACTGGCACCA+AGG	0.651882	7_1:+76715662	None:intergenic
ACAAAGATACCAACCAATTA+AGG	0.323697	7_1:+76716320	None:intergenic
ACAATCACTTCCTCTAAATT+CGG	0.394533	7_1:+76715561	None:intergenic
ACATAGGCTTTGACTCTTTC+AGG	0.142456	7_1:+76716288	None:intergenic
ACTAGTACAACCATATAAGA+TGG	0.557805	7_1:+76715286	None:intergenic
ACTTAAAATCATCAAGGTCT+TGG	0.445786	7_1:+76715323	None:intergenic
AGAGTTCGGGGAAGCCATGA+AGG	0.565421	7_1:+76716546	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGAAAAAACAGAGATGGA+AGG	-	chr7_1:76715176-76715195	Msa1039480:three_prime_UTR	30.0%
TATAGCAGAAAAAGGAAAAG+AGG	-	chr7_1:76715241-76715260	Msa1039480:three_prime_UTR	30.0%
ATAGCAGAAAAAGGAAAAGA+GGG	-	chr7_1:76715242-76715261	Msa1039480:three_prime_UTR	30.0%
ACAAAGATACCAACCAATTA+AGG	+	chr7_1:76715509-76715528	None:intergenic	30.0%
TACGTAGAAACCCAAATAAA+AGG	-	chr7_1:76715581-76715600	Msa1039480:CDS	30.0%
AAATATGATCATATAGAGGC+TGG	+	chr7_1:76715677-76715696	None:intergenic	30.0%
TGAAAAATATCCTCACAACA+CGG	-	chr7_1:76715842-76715861	Msa1039480:CDS	30.0%
ATTTAGAGACAAAGTAAGCA+AGG	+	chr7_1:76715963-76715982	None:intergenic	30.0%
GTCTCTAAATTTGACAAAAC+AGG	-	chr7_1:76715973-76715992	Msa1039480:CDS	30.0%
ACAATCACTTCCTCTAAATT+CGG	+	chr7_1:76716268-76716287	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	76715165	76716683	76715165	ID=Msa1039480;Name=Msa1039480
chr7_1	mRNA	76715165	76716683	76715165	ID=Msa1039480-mRNA-1;Parent=Msa1039480;Name=Msa1039480-mRNA-1;_AED=0.07;_eAED=0.07;_QI=508\|1\|1\|1\|0.5\|0.66\|3\|311\|159
chr7_1	exon	76715165	76715722	76715165	ID=Msa1039480-mRNA-1:exon:19968;Parent=Msa1039480-mRNA-1
chr7_1	exon	76715814	76716058	76715814	ID=Msa1039480-mRNA-1:exon:19967;Parent=Msa1039480-mRNA-1
chr7_1	exon	76716188	76716683	76716188	ID=Msa1039480-mRNA-1:exon:19966;Parent=Msa1039480-mRNA-1
chr7_1	five_prime_UTR	76716188	76716683	76716188	ID=Msa1039480-mRNA-1:five_prime_utr;Parent=Msa1039480-mRNA-1
chr7_1	five_prime_UTR	76716047	76716058	76716047	ID=Msa1039480-mRNA-1:five_prime_utr;Parent=Msa1039480-mRNA-1
chr7_1	CDS	76715814	76716046	76715814	ID=Msa1039480-mRNA-1:cds;Parent=Msa1039480-mRNA-1
chr7_1	CDS	76715476	76715722	76715476	ID=Msa1039480-mRNA-1:cds;Parent=Msa1039480-mRNA-1
chr7_1	three_prime_UTR	76715165	76715475	76715165	ID=Msa1039480-mRNA-1:three_prime_utr;Parent=Msa1039480-mRNA-1

Gene Sequence

>Msa1039480

ATGGAAGCTGAGATTGCTGAAGTTGGCACCGCTTATGTGCTGAAAAATATCCTCACAACACGGAAAATTGGTCCTCCAATACTTCCCAACGGCGAGTACGGAACTGGATTCAACCCGGATACCCCTGACACCTTGCCCTCTTGGCTTACAGAAGACGACCTTGCTTACTTTGTCTCTAAATTTGACAAAACAGGCTTCACTGGAGGATTGAACTACTACAGAAACATAGACCTACTCTGGGAGCTCACAGCTCCATGGACCGGAGTGAAAACCTTGGTGCCAGTGAAATTCATTACAGGTGAGCTAGATATGGTGTACACTTCGCTAGGCATGAAGGAGTATATACATGGAGGAGGAATGAAGGAAGATGTGCCGAATTTAGAGGAAGTGATTGTACAAAAAGGAGTGGGCCACTTTAATAATCAAGAAGCAGCATCAGAAATCAGTAAACACATTCACGAATTCATCCTGAAGTTCTAA

Protein sequence

>Msa1039480

MEAEIAEVGTAYVLKNILTTRKIGPPILPNGEYGTGFNPDTPDTLPSWLTEDDLAYFVSKFDKTGFTGGLNYYRNIDLLWELTAPWTGVKTLVPVKFITGELDMVYTSLGMKEYIHGGGMKEDVPNLEEVIVQKGVGHFNNQEAASEISKHIHEFILKF*