Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085590 | XP_003631146.1 | 93.774 | 257 | 2 | 2 | 20 | 276 | 73 | 315 | 8.93e-172 | 487 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085590 | sp|Q9C9X3|ANXD5_ARATH | 53.617 | 235 | 108 | 1 | 42 | 275 | 81 | 315 | 2.36e-87 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085590 | G7LE90 | 93.774 | 257 | 2 | 2 | 20 | 276 | 73 | 315 | 4.27e-172 | 487 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa1085590 | -0.820118 | 8.121794e-53 | -8.615850e-47 |
| Msa0039380 | Msa1085590 | 0.826237 | 3.029677e-54 | -8.615850e-47 |
| Msa0040520 | Msa1085590 | 0.804837 | 1.783234e-49 | -8.615850e-47 |
| Msa0043680 | Msa1085590 | -0.805428 | 1.341497e-49 | -8.615850e-47 |
| Msa0043960 | Msa1085590 | 0.809440 | 1.890287e-50 | -8.615850e-47 |
| Msa0044050 | Msa1085590 | 0.804545 | 2.052118e-49 | -8.615850e-47 |
| Msa0049400 | Msa1085590 | 0.805070 | 1.594031e-49 | -8.615850e-47 |
| Msa0076240 | Msa1085590 | 0.803942 | 2.740363e-49 | -8.615850e-47 |
| Msa0086020 | Msa1085590 | 0.832471 | 9.277553e-56 | -8.615850e-47 |
| Msa0621940 | Msa1085590 | 0.869514 | 2.924944e-66 | -8.615850e-47 |
| Msa0622010 | Msa1085590 | 0.855460 | 6.217581e-62 | -8.615850e-47 |
| Msa0642650 | Msa1085590 | -0.815845 | 7.502867e-52 | -8.615850e-47 |
| Msa0681890 | Msa1085590 | -0.801322 | 9.511704e-49 | -8.615850e-47 |
| Msa0145950 | Msa1085590 | -0.805459 | 1.321260e-49 | -8.615850e-47 |
| Msa0146470 | Msa1085590 | -0.814332 | 1.625820e-51 | -8.615850e-47 |
| Msa0168640 | Msa1085590 | 0.823935 | 1.059244e-53 | -8.615850e-47 |
| Msa0183190 | Msa1085590 | 0.823049 | 1.707233e-53 | -8.615850e-47 |
| Msa0183800 | Msa1085590 | 0.809274 | 2.051687e-50 | -8.615850e-47 |
| Msa0185390 | Msa1085590 | -0.805439 | 1.333934e-49 | -8.615850e-47 |
| Msa0193620 | Msa1085590 | 0.809777 | 1.600301e-50 | -8.615850e-47 |
| Msa0196020 | Msa1085590 | 0.822213 | 2.672205e-53 | -8.615850e-47 |
| Msa0222070 | Msa1085590 | -0.802907 | 4.488568e-49 | -8.615850e-47 |
| Msa0222120 | Msa1085590 | -0.805918 | 1.058266e-49 | -8.615850e-47 |
| Msa0417630 | Msa1085590 | -0.811801 | 5.836668e-51 | -8.615850e-47 |
| Msa0427590 | Msa1085590 | -0.800200 | 1.611300e-48 | -8.615850e-47 |
| Msa0469910 | Msa1085590 | 0.806843 | 6.754492e-50 | -8.615850e-47 |
| Msa1002040 | Msa1085590 | -0.807350 | 5.276365e-50 | -8.615850e-47 |
| Msa1027790 | Msa1085590 | -0.817624 | 2.994067e-52 | -8.615850e-47 |
| Msa1028470 | Msa1085590 | 0.829238 | 5.757204e-55 | -8.615850e-47 |
| Msa1030570 | Msa1085590 | 0.802644 | 5.086566e-49 | -8.615850e-47 |
| Msa1037060 | Msa1085590 | 0.804318 | 2.287990e-49 | -8.615850e-47 |
| Msa1039480 | Msa1085590 | 0.889921 | 1.570365e-73 | -8.615850e-47 |
| Msa1069660 | Msa1085590 | 0.823388 | 1.423176e-53 | -8.615850e-47 |
| Msa1077940 | Msa1085590 | 0.803196 | 3.911921e-49 | -8.615850e-47 |
| Msa1085590 | Msa1112610 | -0.819462 | 1.146649e-52 | -8.615850e-47 |
| Msa1085590 | Msa1149760 | -0.815405 | 9.402117e-52 | -8.615850e-47 |
| Msa1085590 | Msa1157920 | -0.805163 | 1.524031e-49 | -8.615850e-47 |
| Msa1085590 | Msa1164800 | 0.810001 | 1.432049e-50 | -8.615850e-47 |
| Msa1085590 | Msa1214900 | -0.800818 | 1.205693e-48 | -8.615850e-47 |
| Msa1085590 | Msa1269580 | 0.801044 | 1.084297e-48 | -8.615850e-47 |
| Msa1085590 | Msa1271510 | -0.801040 | 1.086020e-48 | -8.615850e-47 |
| Msa1085590 | Msa1305040 | 0.864554 | 1.118364e-64 | -8.615850e-47 |
| Msa1085590 | Msa1306720 | 0.866359 | 3.020610e-65 | -8.615850e-47 |
| Msa1085590 | Msa1365870 | -0.807595 | 4.680695e-50 | -8.615850e-47 |
| Msa1085590 | Msa1370670 | 0.806668 | 7.354923e-50 | -8.615850e-47 |
| Msa1085590 | Msa1381130 | -0.803110 | 4.075110e-49 | -8.615850e-47 |
| Msa1085590 | Msa1433300 | 0.871315 | 7.505022e-67 | -8.615850e-47 |
| Msa1085590 | Msa1442220 | 0.861105 | 1.296324e-63 | -8.615850e-47 |
| Msa0256290 | Msa1085590 | 0.824075 | 9.821903e-54 | -8.615850e-47 |
| Msa0260120 | Msa1085590 | 0.826611 | 2.467581e-54 | -8.615850e-47 |
| Msa0263620 | Msa1085590 | -0.805305 | 1.423511e-49 | -8.615850e-47 |
| Msa0275400 | Msa1085590 | 0.850239 | 1.930697e-60 | -8.615850e-47 |
| Msa0546740 | Msa1085590 | -0.818808 | 1.615684e-52 | -8.615850e-47 |
| Msa0575990 | Msa1085590 | 0.969808 | 1.138182e-130 | -8.615850e-47 |
| Msa0576100 | Msa1085590 | 0.966787 | 2.172191e-126 | -8.615850e-47 |
| Msa0579340 | Msa1085590 | -0.800737 | 1.252688e-48 | -8.615850e-47 |
| Msa0844530 | Msa1085590 | -0.814782 | 1.293032e-51 | -8.615850e-47 |
| Msa0900320 | Msa1085590 | -0.801876 | 7.320942e-49 | -8.615850e-47 |
| Msa0955260 | Msa1085590 | -0.810704 | 1.009589e-50 | -8.615850e-47 |
| Msa0958020 | Msa1085590 | -0.806756 | 7.046704e-50 | -8.615850e-47 |
| Msa0965960 | Msa1085590 | -0.808473 | 3.044083e-50 | -8.615850e-47 |
| Msa0972730 | Msa1085590 | -0.824687 | 7.052088e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085590 | MtrunA17_Chr8g0393281 | 93.774 | 257 | 2 | 2 | 20 | 276 | 73 | 315 | 8.22e-176 | 487 |
| Msa1085590 | MtrunA17_Chr6g0479421 | 77.350 | 234 | 53 | 0 | 42 | 275 | 81 | 314 | 2.41e-127 | 364 |
| Msa1085590 | MtrunA17_Chr6g0479411 | 73.932 | 234 | 61 | 0 | 42 | 275 | 108 | 341 | 4.04e-127 | 365 |
| Msa1085590 | MtrunA17_Chr1g0210981 | 76.068 | 234 | 56 | 0 | 42 | 275 | 81 | 314 | 5.22e-125 | 358 |
| Msa1085590 | MtrunA17_Chr6g0479391 | 75.862 | 232 | 56 | 0 | 44 | 275 | 83 | 314 | 1.38e-124 | 357 |
| Msa1085590 | MtrunA17_Chr1g0162071 | 58.898 | 236 | 93 | 3 | 42 | 275 | 81 | 314 | 3.65e-97 | 288 |
| Msa1085590 | MtrunA17_Chr1g0162071 | 33.333 | 141 | 90 | 2 | 130 | 270 | 15 | 151 | 4.14e-15 | 73.9 |
| Msa1085590 | MtrunA17_Chr8g0352571 | 39.574 | 235 | 135 | 3 | 44 | 273 | 83 | 315 | 8.77e-46 | 156 |
| Msa1085590 | MtrunA17_Chr3g0083901 | 35.470 | 234 | 149 | 2 | 42 | 274 | 80 | 312 | 2.21e-44 | 152 |
| Msa1085590 | MtrunA17_Chr8g0352621 | 34.764 | 233 | 150 | 2 | 42 | 273 | 79 | 310 | 2.92e-41 | 144 |
| Msa1085590 | MtrunA17_Chr5g0425971 | 34.894 | 235 | 149 | 4 | 44 | 276 | 83 | 315 | 4.21e-41 | 144 |
| Msa1085590 | MtrunA17_Chr3g0083921 | 35.043 | 234 | 150 | 2 | 44 | 276 | 82 | 314 | 1.51e-40 | 142 |
| Msa1085590 | MtrunA17_Chr2g0293441 | 33.476 | 233 | 153 | 2 | 42 | 273 | 80 | 311 | 1.89e-40 | 142 |
| Msa1085590 | MtrunA17_Chr8g0352611 | 33.906 | 233 | 153 | 1 | 44 | 276 | 82 | 313 | 5.90e-39 | 138 |
| Msa1085590 | MtrunA17_Chr8g0352611 | 29.448 | 163 | 103 | 4 | 110 | 272 | 1 | 151 | 1.48e-11 | 63.5 |
| Msa1085590 | MtrunA17_Chr8g0352591 | 35.065 | 231 | 137 | 3 | 44 | 273 | 82 | 300 | 4.92e-38 | 135 |
| Msa1085590 | MtrunA17_Chr8g0382281 | 33.191 | 235 | 153 | 3 | 44 | 276 | 83 | 315 | 5.04e-37 | 133 |
| Msa1085590 | MtrunA17_Chr6g0461141 | 33.621 | 232 | 148 | 5 | 45 | 271 | 77 | 307 | 6.55e-31 | 117 |
| Msa1085590 | MtrunA17_Chr8g0352581 | 31.933 | 238 | 148 | 5 | 42 | 273 | 82 | 311 | 3.14e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085590 | AT1G68090.1 | 53.617 | 235 | 108 | 1 | 42 | 275 | 81 | 315 | 2.40e-88 | 266 |
| Msa1085590 | AT1G68090.1 | 28.767 | 146 | 100 | 2 | 131 | 276 | 16 | 157 | 3.48e-11 | 63.2 |
| Msa1085590 | AT1G68090.2 | 48.235 | 170 | 87 | 1 | 42 | 210 | 81 | 250 | 2.64e-51 | 169 |
| Msa1085590 | AT1G68090.2 | 29.577 | 142 | 96 | 2 | 131 | 272 | 16 | 153 | 1.52e-11 | 63.5 |
| Msa1085590 | AT5G10230.1 | 36.515 | 241 | 146 | 3 | 34 | 273 | 78 | 312 | 5.43e-48 | 162 |
| Msa1085590 | AT5G10230.1 | 32.653 | 147 | 95 | 2 | 127 | 273 | 12 | 154 | 1.26e-14 | 73.2 |
| Msa1085590 | AT5G10220.1 | 38.034 | 234 | 139 | 5 | 44 | 273 | 83 | 314 | 6.22e-48 | 162 |
| Msa1085590 | AT5G65020.2 | 37.339 | 233 | 141 | 4 | 44 | 273 | 68 | 298 | 4.49e-47 | 159 |
| Msa1085590 | AT5G65020.2 | 30.714 | 140 | 94 | 1 | 134 | 273 | 3 | 139 | 2.32e-13 | 69.3 |
| Msa1085590 | AT5G65020.1 | 37.339 | 233 | 141 | 4 | 44 | 273 | 83 | 313 | 7.54e-47 | 159 |
| Msa1085590 | AT5G65020.1 | 32.000 | 150 | 98 | 2 | 124 | 273 | 9 | 154 | 2.12e-14 | 72.4 |
| Msa1085590 | AT5G12380.1 | 34.764 | 233 | 146 | 3 | 44 | 273 | 82 | 311 | 6.13e-42 | 146 |
| Msa1085590 | AT1G35720.1 | 34.188 | 234 | 151 | 3 | 44 | 275 | 83 | 315 | 1.63e-41 | 145 |
| Msa1085590 | AT1G35720.1 | 32.867 | 143 | 92 | 2 | 130 | 272 | 15 | 153 | 8.15e-14 | 70.9 |
| Msa1085590 | AT2G38760.1 | 32.353 | 238 | 153 | 3 | 43 | 273 | 82 | 318 | 4.40e-35 | 129 |
| Msa1085590 | AT2G38750.2 | 32.653 | 245 | 143 | 8 | 42 | 275 | 68 | 301 | 3.12e-24 | 99.4 |
| Msa1085590 | AT2G38750.1 | 32.653 | 245 | 143 | 8 | 42 | 275 | 85 | 318 | 3.53e-24 | 99.8 |
Find 96 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTTATCTTCTGAGCTTTC+TGG | 0.083778 | 7_2:-86389702 | Msa1085590:CDS |
| TATATAGTATAATATAATTT+TGG | 0.090554 | 7_2:-86390133 | Msa1085590:five_prime_UTR |
| CATCCCAGCTCCAATATTTA+AGG | 0.208022 | 7_2:-86389544 | Msa1085590:CDS |
| TATATTATACTATATATTAT+TGG | 0.214575 | 7_2:+86390140 | None:intergenic |
| AGACGGTCAGAGTCTGTTTA+AGG | 0.250402 | 7_2:+86389612 | None:intergenic |
| TTCTGAGCTTTCTGGCAAAT+TGG | 0.253655 | 7_2:-86389694 | Msa1085590:CDS |
| TGGAGAATGCTATTCTTCTT+TGG | 0.262983 | 7_2:-86389674 | Msa1085590:CDS |
| CTATGGTCATTCATTGAAAA+AGG | 0.272511 | 7_2:-86389185 | Msa1085590:intron |
| CTTTGATTTCCGTCTGCATT+TGG | 0.310705 | 7_2:-86390074 | Msa1085590:five_prime_UTR |
| ACCTTTGCGAAATACTTTGC+AGG | 0.321834 | 7_2:+86386913 | None:intergenic |
| TGCCTCTGGGGATCATAAAA+AGG | 0.322450 | 7_2:-86389468 | Msa1085590:intron |
| GGTAAATCTGCCTTAAATAT+TGG | 0.325628 | 7_2:+86389534 | None:intergenic |
| CGAAGTGTTAGTTGGCGATT+TGG | 0.327963 | 7_2:-86390167 | Msa1085590:five_prime_UTR |
| TAAAGCAGGTGAGAAGAAAC+TGG | 0.345893 | 7_2:-86389293 | Msa1085590:CDS |
| AAGTTGCATAGCATCGTCTC+TGG | 0.368282 | 7_2:+86390004 | None:intergenic |
| TATTAACCTCGGGGCCTTCA+TGG | 0.371117 | 7_2:+86389350 | None:intergenic |
| CTCCACACAAAACATGCATT+TGG | 0.381699 | 7_2:+86386203 | None:intergenic |
| TTTCAATGAATGACCATAGT+TGG | 0.381777 | 7_2:+86389189 | None:intergenic |
| AGGCATTTCTTTCAATATCA+TGG | 0.384021 | 7_2:+86389486 | None:intergenic |
| GATAAACGCCGAATCTAGTA+TGG | 0.386843 | 7_2:+86389513 | None:intergenic |
| GCCATTTCTCTATTAACCTC+GGG | 0.416575 | 7_2:+86389340 | None:intergenic |
| ATGATCGCATCGCGGGTGGC+AGG | 0.418114 | 7_2:+86389635 | None:intergenic |
| TGCTATTCTTCTTTGGATGC+AGG | 0.419687 | 7_2:-86389667 | Msa1085590:CDS |
| GCAATAAAGAATGAAACATC+AGG | 0.421465 | 7_2:-86386982 | Msa1085590:CDS |
| CATTTGGACTGCTACTGGTT+GGG | 0.425583 | 7_2:+86386219 | None:intergenic |
| ACGTAAGGCAATGAAAGGTC+TGG | 0.431308 | 7_2:-86386406 | Msa1085590:CDS |
| CAGATTTACCATACTAGATT+CGG | 0.431656 | 7_2:-86389521 | Msa1085590:CDS |
| AATATCAATAAAGAAAAGAT+TGG | 0.443691 | 7_2:+86386145 | None:intergenic |
| CCGATGACACGAAACTTATG+AGG | 0.444443 | 7_2:-86386380 | Msa1085590:CDS |
| TTTGAGAAGATCTTCAGAAT+AGG | 0.444725 | 7_2:+86389725 | None:intergenic |
| TAGCTCTGTATTCTTGTTGG+AGG | 0.449864 | 7_2:+86389748 | None:intergenic |
| TCTGCCTTAAATATTGGAGC+TGG | 0.456137 | 7_2:+86389540 | None:intergenic |
| ACATGCATTTGGACTGCTAC+TGG | 0.459471 | 7_2:+86386214 | None:intergenic |
| CCAACTGTGCGGCACTCCGT+TGG | 0.459909 | 7_2:+86389236 | None:intergenic |
| GCAGTTCACTCGGAAACATC+TGG | 0.461957 | 7_2:-86386276 | Msa1085590:CDS |
| CCCCGAGGTTAATAGAGAAA+TGG | 0.469091 | 7_2:-86389341 | Msa1085590:CDS |
| CATCTCATCGAAGTGTTAGT+TGG | 0.469886 | 7_2:-86390175 | Msa1085590:five_prime_UTR |
| CGTAAGGCAATGAAAGGTCT+GGG | 0.471119 | 7_2:-86386405 | Msa1085590:CDS |
| CGGAAACATCTGGCCACTAC+AGG | 0.473093 | 7_2:-86386266 | Msa1085590:CDS |
| GCCAAGGTTCTTTATAAAGC+AGG | 0.481064 | 7_2:-86389307 | Msa1085590:CDS |
| AGGTAGCTCTGTATTCTTGT+TGG | 0.495794 | 7_2:+86389745 | None:intergenic |
| AGCCATTTCTCTATTAACCT+CGG | 0.502469 | 7_2:+86389339 | None:intergenic |
| GATATTGAAAGAAATGCCTC+TGG | 0.502650 | 7_2:-86389482 | Msa1085590:CDS |
| CTTAAATATTGGAGCTGGGA+TGG | 0.506218 | 7_2:+86389545 | None:intergenic |
| TCTGTATTCTTGTTGGAGGT+AGG | 0.508043 | 7_2:+86389752 | None:intergenic |
| CAACTTCACCGTGCTTTCAA+AGG | 0.508493 | 7_2:-86389987 | Msa1085590:intron |
| CCTCATAAGTTTCGTGTCAT+CGG | 0.515712 | 7_2:+86386380 | None:intergenic |
| CCAACGGAGTGCCGCACAGT+TGG | 0.517490 | 7_2:-86389236 | Msa1085590:CDS |
| ACCTCGGGGCCTTCATGGCG+TGG | 0.520754 | 7_2:+86389355 | None:intergenic |
| AGCATATTGCACATATATGA+TGG | 0.521402 | 7_2:-86386053 | Msa1085590:three_prime_UTR |
| TTTAAGGATGATCGCATCGC+GGG | 0.525060 | 7_2:+86389628 | None:intergenic |
| ATGTAGATCTATCTCACTCC+TGG | 0.533758 | 7_2:+86386347 | None:intergenic |
| TGTATGTATCTATATATGCA+TGG | 0.542822 | 7_2:-86386018 | Msa1085590:three_prime_UTR |
| GCATTTGGACTGCTACTGGT+TGG | 0.546867 | 7_2:+86386218 | None:intergenic |
| GAAATACTTTGCAGGACTCT+CGG | 0.548694 | 7_2:+86386921 | None:intergenic |
| CTGCCTTAAATATTGGAGCT+GGG | 0.548696 | 7_2:+86389541 | None:intergenic |
| ACCTGCTTTATAAAGAACCT+TGG | 0.551796 | 7_2:+86389306 | None:intergenic |
| TCATAGAGATGCCACTCAGC+GGG | 0.554538 | 7_2:-86389775 | Msa1085590:exon |
| GCTCATTTATTCAACAACAT+AGG | 0.563805 | 7_2:+86386172 | None:intergenic |
| ATGAATGACCATAGTTGGCA+TGG | 0.568883 | 7_2:+86389194 | None:intergenic |
| AAGTATATTGATCACAGCGC+TGG | 0.572934 | 7_2:+86389800 | None:intergenic |
| GTATGTATCTATATATGCAT+GGG | 0.577181 | 7_2:-86386017 | Msa1085590:three_prime_UTR |
| TGATCGCATCGCGGGTGGCA+GGG | 0.577286 | 7_2:+86389636 | None:intergenic |
| TTGTGCAAATATTCAGCCAA+CGG | 0.579000 | 7_2:-86389252 | Msa1085590:CDS |
| AGAGAAGAAAAGCCCTGTAG+TGG | 0.580742 | 7_2:+86386253 | None:intergenic |
| TTGCAGGACTCTCGGCACAT+TGG | 0.581738 | 7_2:+86386929 | None:intergenic |
| GTAAGCACGCCACGCCATGA+AGG | 0.585985 | 7_2:-86389364 | Msa1085590:CDS |
| AGTTGCATAGCATCGTCTCT+GGG | 0.589297 | 7_2:+86390005 | None:intergenic |
| AGAAGGAACCTTTGAAAGCA+CGG | 0.590481 | 7_2:+86389979 | None:intergenic |
| GTCCTACGTAAGGCAATGAA+AGG | 0.594808 | 7_2:-86386411 | Msa1085590:CDS |
| ATATTGAAAGAAATGCCTCT+GGG | 0.595614 | 7_2:-86389481 | Msa1085590:CDS |
| GCTGAATGATGCAGTTCACT+CGG | 0.599454 | 7_2:-86386286 | Msa1085590:CDS |
| ATGTATGCAGGTCCTACGTA+AGG | 0.602486 | 7_2:-86386421 | Msa1085590:intron |
| AAGGATGATCGCATCGCGGG+TGG | 0.610475 | 7_2:+86389631 | None:intergenic |
| TTCTTCGATCCAAATGCAGA+CGG | 0.613358 | 7_2:+86390065 | None:intergenic |
| GGAAACATCTGGCCACTACA+GGG | 0.629881 | 7_2:-86386265 | Msa1085590:CDS |
| GTTTAAGGATGATCGCATCG+CGG | 0.634734 | 7_2:+86389627 | None:intergenic |
| TCCTGCAAAGTATTTCGCAA+AGG | 0.635917 | 7_2:-86386914 | Msa1085590:intron |
| CAATAAAGAATGAAACATCA+GGG | 0.640821 | 7_2:-86386981 | Msa1085590:CDS |
| TTGGAGGTAGGCCCGCTGAG+TGG | 0.643177 | 7_2:+86389764 | None:intergenic |
| CAAATGCAGACGGAAATCAA+AGG | 0.646428 | 7_2:+86390075 | None:intergenic |
| TTGCATAGCATCGTCTCTGG+GGG | 0.646475 | 7_2:+86390007 | None:intergenic |
| CCATTTCTCTATTAACCTCG+GGG | 0.647560 | 7_2:+86389341 | None:intergenic |
| TCGAGAACATATAACTTCAG+TGG | 0.648591 | 7_2:+86389571 | None:intergenic |
| AAAGCAGGTGAGAAGAAACT+GGG | 0.649440 | 7_2:-86389292 | Msa1085590:CDS |
| AATGGCTGAGAACGATGCCA+AGG | 0.650141 | 7_2:-86389323 | Msa1085590:CDS |
| GTTGCATAGCATCGTCTCTG+GGG | 0.658534 | 7_2:+86390006 | None:intergenic |
| TTATGAGGGTGATTGTAACC+AGG | 0.659039 | 7_2:-86386365 | Msa1085590:CDS |
| AATATGTACACAAACTCACT+CGG | 0.659493 | 7_2:-86386097 | Msa1085590:three_prime_UTR |
| CGATGACACGAAACTTATGA+GGG | 0.666861 | 7_2:-86386379 | Msa1085590:CDS |
| CTCATAGAGATGCCACTCAG+CGG | 0.668547 | 7_2:-86389776 | Msa1085590:exon |
| GACCTTTCATTGCCTTACGT+AGG | 0.695083 | 7_2:+86386409 | None:intergenic |
| GCCACGCCATGAAGGCCCCG+AGG | 0.698151 | 7_2:-86389356 | Msa1085590:CDS |
| TATTGAAAGAAATGCCTCTG+GGG | 0.698736 | 7_2:-86389480 | Msa1085590:CDS |
| GTAAGGCAATGAAAGGTCTG+GGG | 0.711244 | 7_2:-86386404 | Msa1085590:CDS |
| ATTTATGGCAGCCAACTGTG+CGG | 0.736814 | 7_2:+86389225 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAATTTAAAATTTTATT+AGG | - | chr7_2:86387283-86387302 | Msa1085590:intron | 0.0% |
| !!! | ACTTATTGTTAAAATAATTT+TGG | - | chr7_2:86389393-86389412 | Msa1085590:intron | 10.0% |
| !!! | CTTATTGTTAAAATAATTTT+GGG | - | chr7_2:86389394-86389413 | Msa1085590:intron | 10.0% |
| !!! | TGAATAAGTTATTTTGAAAA+AGG | + | chr7_2:86388254-86388273 | None:intergenic | 15.0% |
| !!! | TGAATAAGTTATTTTGAAAA+AGG | - | chr7_2:86388254-86388273 | Msa1085590:intron | 15.0% |
| !!! | TGAATAAGTTATTTTGAAAA+AGG | - | chr7_2:86388254-86388273 | Msa1085590:intron | 15.0% |
| !!! | TAAATAAGTTGTTTTGAAAA+AGG | - | chr7_2:86388346-86388365 | Msa1085590:intron | 15.0% |
| !! | AAATAAATACAATAAAGCTT+AGG | + | chr7_2:86389535-86389554 | None:intergenic | 15.0% |
| !! | AATATCAATAAAGAAAAGAT+TGG | + | chr7_2:86390023-86390042 | None:intergenic | 15.0% |
| !! | GAATTAGAATTAGAATTAGA+AGG | + | chr7_2:86386304-86386323 | None:intergenic | 20.0% |
| !!! | TTAAGGGTATAAATTTAAAG+TGG | + | chr7_2:86387024-86387043 | None:intergenic | 20.0% |
| !! | TTAAATTTATACCCTTAACT+AGG | - | chr7_2:86387026-86387045 | Msa1085590:intron | 20.0% |
| !! | TAAATTTATACCCTTAACTA+GGG | - | chr7_2:86387027-86387046 | Msa1085590:intron | 20.0% |
| !!! | CTGAATTGTTTTTGAATTTA+TGG | + | chr7_2:86387147-86387166 | None:intergenic | 20.0% |
| !! | ATGGTTCAAATATATTAAAC+TGG | + | chr7_2:86387194-86387213 | None:intergenic | 20.0% |
| !!! | GAAAGTGTACTAAAAAAATA+TGG | + | chr7_2:86387213-86387232 | None:intergenic | 20.0% |
| !! | TTTACACAAAACAACTTATT+AGG | - | chr7_2:86387890-86387909 | Msa1085590:intron | 20.0% |
| !! | AACAACTTATTTACGTAAAA+CGG | - | chr7_2:86387941-86387960 | Msa1085590:intron | 20.0% |
| !! | TTTATGCAAAATAGCTTATT+AGG | - | chr7_2:86388010-86388029 | Msa1085590:intron | 20.0% |
| !!! | TAAATAAGCTGTTTTGAAAA+AGG | - | chr7_2:86388300-86388319 | Msa1085590:intron | 20.0% |
| !! | TTTATGCAAAACAGTTTATT+AGG | + | chr7_2:86388330-86388349 | None:intergenic | 20.0% |
| !! | AACAACTTATTTACGTAAAA+CGG | + | chr7_2:86387941-86387960 | None:intergenic | 20.0% |
| !! | TTTACAAAAAACAGCTTATT+AGG | + | chr7_2:86388630-86388649 | None:intergenic | 20.0% |
| !! | TTTACGTAAAACAACTTATT+AGG | + | chr7_2:86388810-86388829 | None:intergenic | 20.0% |
| !!! | GATTTTAGTCATTGTTTATT+AGG | + | chr7_2:86388856-86388875 | None:intergenic | 20.0% |
| !!! | TAAACCAGTTTTTTTTAAAG+TGG | - | chr7_2:86389027-86389046 | Msa1085590:intron | 20.0% |
| !!! | AAAACCACTTTAAAAAAAAC+TGG | + | chr7_2:86389034-86389053 | None:intergenic | 20.0% |
| !!! | TTAAAATAATTTTGGGAAGA+AGG | - | chr7_2:86389401-86389420 | Msa1085590:intron | 20.0% |
| ! | TTACATATGCAAGTAAAATC+TGG | + | chr7_2:86386785-86386804 | None:intergenic | 25.0% |
| ! | AAATTTATACCCTTAACTAG+GGG | - | chr7_2:86387028-86387047 | Msa1085590:intron | 25.0% |
| !!! | TTAAATGGTGCAGTTTTTTT+TGG | + | chr7_2:86387107-86387126 | None:intergenic | 25.0% |
| ! | AAAAAACTGCACCATTTAAA+TGG | - | chr7_2:86387108-86387127 | Msa1085590:intron | 25.0% |
| ! | CAGTTCATAAACCATTTAAA+TGG | + | chr7_2:86387122-86387141 | None:intergenic | 25.0% |
| !! | ATTCAGTTCAAGTTTAAAAC+CGG | - | chr7_2:86387161-86387180 | Msa1085590:intron | 25.0% |
| ! | TTTATGCAAAACAGCTTATT+AGG | - | chr7_2:86387343-86387362 | Msa1085590:intron | 25.0% |
| !! | AATAAGTTGTTTCGAATAAG+CGG | + | chr7_2:86387388-86387407 | None:intergenic | 25.0% |
| ! | AACAGCTTATTTACGTAAAA+CGG | - | chr7_2:86387517-86387536 | Msa1085590:intron | 25.0% |
| ! | TTTACGCAAAATAGCTTATT+AGG | - | chr7_2:86387586-86387605 | Msa1085590:intron | 25.0% |
| ! | TTTACACAAAACAGCTTATT+AGG | - | chr7_2:86387466-86387485 | Msa1085590:intron | 25.0% |
| ! | TTTACACAAAACAGCTTATT+AGG | - | chr7_2:86387466-86387485 | Msa1085590:intron | 25.0% |
| ! | TTTATGCAAAACGACTTATT+AGG | - | chr7_2:86387646-86387665 | Msa1085590:intron | 25.0% |
| ! | TTTACACAAAACAGCTTATT+AGG | - | chr7_2:86387466-86387485 | Msa1085590:intron | 25.0% |
| ! | CAATAAAGAATGAAACATCA+GGG | - | chr7_2:86389184-86389203 | Msa1085590:intron | 25.0% |
| !!! | CTGGCAATAAAATTTTTAAG+AGG | + | chr7_2:86389685-86389704 | None:intergenic | 25.0% |
| !! | CTCTTAAAAATTTTATTGCC+AGG | - | chr7_2:86389683-86389702 | Msa1085590:CDS | 25.0% |
| !! | TTTTATTGCCAGGATAATTA+AGG | - | chr7_2:86389693-86389712 | Msa1085590:CDS | 25.0% |
| ! | TGTATGTATCTATATATGCA+TGG | - | chr7_2:86390147-86390166 | Msa1085590:five_prime_UTR | 25.0% |
| ! | GTATGTATCTATATATGCAT+GGG | - | chr7_2:86390148-86390167 | Msa1085590:five_prime_UTR | 25.0% |
| GAAGAAATGAAAACCAAAGA+AGG | + | chr7_2:86386206-86386225 | None:intergenic | 30.0% | |
| AGAATTAGAATTAGAAGGCA+TGG | + | chr7_2:86386299-86386318 | None:intergenic | 30.0% | |
| ! | TCATTCTGTCATCTTTTATC+AGG | - | chr7_2:86386328-86386347 | Msa1085590:CDS | 30.0% |
| ! | TGTCATCTTTTATCAGGATT+TGG | - | chr7_2:86386334-86386353 | Msa1085590:CDS | 30.0% |
| ! | GTCATCTTTTATCAGGATTT+GGG | - | chr7_2:86386335-86386354 | Msa1085590:CDS | 30.0% |
| TTTGAGAAGATCTTCAGAAT+AGG | + | chr7_2:86386443-86386462 | None:intergenic | 30.0% | |
| GGTAAATCTGCCTTAAATAT+TGG | + | chr7_2:86386634-86386653 | None:intergenic | 30.0% | |
| CAGATTTACCATACTAGATT+CGG | - | chr7_2:86386644-86386663 | Msa1085590:intron | 30.0% | |
| AGGCATTTCTTTCAATATCA+TGG | + | chr7_2:86386682-86386701 | None:intergenic | 30.0% | |
| ATATTGAAAGAAATGCCTCT+GGG | - | chr7_2:86386684-86386703 | Msa1085590:intron | 30.0% | |
| GGCATGGTAAAAATGATTTA+TGG | + | chr7_2:86386958-86386977 | None:intergenic | 30.0% | |
| TTTCAATGAATGACCATAGT+TGG | + | chr7_2:86386979-86386998 | None:intergenic | 30.0% | |
| CTATGGTCATTCATTGAAAA+AGG | - | chr7_2:86386980-86386999 | Msa1085590:CDS | 30.0% | |
| TTTACGTAAAACGGCTTATT+AGG | - | chr7_2:86387526-86387545 | Msa1085590:intron | 30.0% | |
| TTTACGTAAAACGGCTTAAT+AGG | - | chr7_2:86387950-86387969 | Msa1085590:intron | 30.0% | |
| TTTACGTAAAACGGCTTATT+AGG | + | chr7_2:86387526-86387545 | None:intergenic | 30.0% | |
| AAACCAGTTCAAGAATAATC+TGG | - | chr7_2:86388884-86388903 | Msa1085590:intron | 30.0% | |
| ! | GAATAATCTGGTTCAAAAAC+TGG | - | chr7_2:86388896-86388915 | Msa1085590:intron | 30.0% |
| ! | ACTGGTTTAAAACTGTAAAC+CGG | - | chr7_2:86388914-86388933 | Msa1085590:intron | 30.0% |
| ! | CTGGTTCGAAATAAATAAAC+CGG | - | chr7_2:86388944-86388963 | Msa1085590:intron | 30.0% |
| CTGAATTGTATCCATTAATG+TGG | - | chr7_2:86389059-86389078 | Msa1085590:intron | 30.0% | |
| GCAATAAAGAATGAAACATC+AGG | - | chr7_2:86389183-86389202 | Msa1085590:intron | 30.0% | |
| AAGGTGAAAATAATGTAGGA+GGG | + | chr7_2:86389285-86389304 | None:intergenic | 30.0% | |
| CATCAAGGTGAAAATAATGT+AGG | + | chr7_2:86389289-86389308 | None:intergenic | 30.0% | |
| ! | CTACATTATTTTCACCTTGA+TGG | - | chr7_2:86389287-86389306 | Msa1085590:CDS | 30.0% |
| ! | AATTGTATTAGTCTCCATCA+AGG | + | chr7_2:86389304-86389323 | None:intergenic | 30.0% |
| AGTGTTAACGCTAAATTATG+TGG | - | chr7_2:86389630-86389649 | Msa1085590:CDS | 30.0% | |
| !!! | TTGGTTGTTTTTAAGGATAG+AGG | - | chr7_2:86389656-86389675 | Msa1085590:CDS | 30.0% |
| !!! | TGGTTGTTTTTAAGGATAGA+GGG | - | chr7_2:86389657-86389676 | Msa1085590:CDS | 30.0% |
| GCTCATTTATTCAACAACAT+AGG | + | chr7_2:86389996-86390015 | None:intergenic | 30.0% | |
| AATATGTACACAAACTCACT+CGG | - | chr7_2:86390068-86390087 | Msa1085590:five_prime_UTR | 30.0% | |
| AGCATATTGCACATATATGA+TGG | - | chr7_2:86390112-86390131 | Msa1085590:five_prime_UTR | 30.0% | |
| TGGAGAATGCTATTCTTCTT+TGG | - | chr7_2:86386491-86386510 | Msa1085590:intron | 35.0% | |
| !! | AGCTTCAAGATTTTTGGAGA+CGG | + | chr7_2:86386573-86386592 | None:intergenic | 35.0% |
| ! | AGTGGTAGCTTCAAGATTTT+TGG | + | chr7_2:86386579-86386598 | None:intergenic | 35.0% |
| TCGAGAACATATAACTTCAG+TGG | + | chr7_2:86386597-86386616 | None:intergenic | 35.0% | |
| GATATTGAAAGAAATGCCTC+TGG | - | chr7_2:86386683-86386702 | Msa1085590:intron | 35.0% | |
| TATTGAAAGAAATGCCTCTG+GGG | - | chr7_2:86386685-86386704 | Msa1085590:intron | 35.0% | |
| AGCCATTTCTCTATTAACCT+CGG | + | chr7_2:86386829-86386848 | None:intergenic | 35.0% | |
| ACCTGCTTTATAAAGAACCT+TGG | + | chr7_2:86386862-86386881 | None:intergenic | 35.0% | |
| TTGTGCAAATATTCAGCCAA+CGG | - | chr7_2:86386913-86386932 | Msa1085590:intron | 35.0% | |
| ! | CATTTTTACCATGCCAACTA+TGG | - | chr7_2:86386963-86386982 | Msa1085590:CDS | 35.0% |
| ATCCATAAACTGAACCAAAC+TGG | - | chr7_2:86387080-86387099 | Msa1085590:intron | 35.0% | |
| !!! | CAGTTTTTTTTGGTCCAGTT+TGG | + | chr7_2:86387097-86387116 | None:intergenic | 35.0% |
| ! | GTTCAAGTTTAAAACCGGTT+CGG | - | chr7_2:86387166-86387185 | Msa1085590:intron | 35.0% |
| ! | ATATTAAACTGGTTCCGAAC+CGG | + | chr7_2:86387183-86387202 | None:intergenic | 35.0% |
| !!! | TCTTGAACTGGTTTTCAAAC+TGG | + | chr7_2:86388878-86388897 | None:intergenic | 35.0% |
| GAACCAGATTATTCTTGAAC+TGG | + | chr7_2:86388890-86388909 | None:intergenic | 35.0% | |
| ! | TTTTCAAACCAGTTCCAGTT+CGG | + | chr7_2:86389006-86389025 | None:intergenic | 35.0% |
| TTGGAACTGAACCACATTAA+TGG | + | chr7_2:86389073-86389092 | None:intergenic | 35.0% | |
| !! | TTCATGGTTCTAAACTGCAT+TGG | + | chr7_2:86389092-86389111 | None:intergenic | 35.0% |
| TGAGAGAAGACTATGGTTAA+GGG | + | chr7_2:86389123-86389142 | None:intergenic | 35.0% | |
| TAAAGAGTGAGAGAAGACTA+TGG | + | chr7_2:86389130-86389149 | None:intergenic | 35.0% | |
| ATGAATTCAGCTTGGATATG+TGG | + | chr7_2:86389160-86389179 | None:intergenic | 35.0% | |
| ATATCCAAGCTGAATTCATC+AGG | - | chr7_2:86389161-86389180 | Msa1085590:intron | 35.0% | |
| CAAGGTGAAAATAATGTAGG+AGG | + | chr7_2:86389286-86389305 | None:intergenic | 35.0% | |
| !! | AACTTGGTTGCTTTGAAACT+AGG | - | chr7_2:86389427-86389446 | Msa1085590:intron | 35.0% |
| ! | TCCTTTTCTCACTGAAAGAA+AGG | - | chr7_2:86389595-86389614 | Msa1085590:CDS | 35.0% |
| ACCTTTCTTTCAGTGAGAAA+AGG | + | chr7_2:86389599-86389618 | None:intergenic | 35.0% | |
| TTTCTCACTGAAAGAAAGGT+TGG | - | chr7_2:86389599-86389618 | Msa1085590:CDS | 35.0% | |
| ACGCTAAATTATGTGGTTGT+TGG | - | chr7_2:86389637-86389656 | Msa1085590:CDS | 35.0% | |
| !!! | GTGGTTGTTGGTTGTTTTTA+AGG | - | chr7_2:86389649-86389668 | Msa1085590:CDS | 35.0% |
| GCTTATCTCCTTAATTATCC+TGG | + | chr7_2:86389704-86389723 | None:intergenic | 35.0% | |
| !! | GCTTTTCTTCTCTCACTTTT+AGG | - | chr7_2:86389922-86389941 | Msa1085590:intron | 35.0% |
| ! | CATCTCATCGAAGTGTTAGT+TGG | - | chr7_2:86385990-86386009 | Msa1085590:three_prime_UTR | 40.0% |
| CAAATGCAGACGGAAATCAA+AGG | + | chr7_2:86386093-86386112 | None:intergenic | 40.0% | |
| ! | CTTTGATTTCCGTCTGCATT+TGG | - | chr7_2:86386091-86386110 | Msa1085590:three_prime_UTR | 40.0% |
| TTCTTCGATCCAAATGCAGA+CGG | + | chr7_2:86386103-86386122 | None:intergenic | 40.0% | |
| ! | AGAAGGAACCTTTGAAAGCA+CGG | + | chr7_2:86386189-86386208 | None:intergenic | 40.0% |
| GCTTTCAAAGGTTCCTTCTT+TGG | - | chr7_2:86386190-86386209 | Msa1085590:three_prime_UTR | 40.0% | |
| AAGTATATTGATCACAGCGC+TGG | + | chr7_2:86386368-86386387 | None:intergenic | 40.0% | |
| TCTGTATTCTTGTTGGAGGT+AGG | + | chr7_2:86386416-86386435 | None:intergenic | 40.0% | |
| ! | TAGCTCTGTATTCTTGTTGG+AGG | + | chr7_2:86386420-86386439 | None:intergenic | 40.0% |
| ! | AGGTAGCTCTGTATTCTTGT+TGG | + | chr7_2:86386423-86386442 | None:intergenic | 40.0% |
| ! | TTCTGAGCTTTCTGGCAAAT+TGG | - | chr7_2:86386471-86386490 | Msa1085590:intron | 40.0% |
| TGCTATTCTTCTTTGGATGC+AGG | - | chr7_2:86386498-86386517 | Msa1085590:intron | 40.0% | |
| CTTAAATATTGGAGCTGGGA+TGG | + | chr7_2:86386623-86386642 | None:intergenic | 40.0% | |
| CATCCCAGCTCCAATATTTA+AGG | - | chr7_2:86386621-86386640 | Msa1085590:intron | 40.0% | |
| CTGCCTTAAATATTGGAGCT+GGG | + | chr7_2:86386627-86386646 | None:intergenic | 40.0% | |
| TCTGCCTTAAATATTGGAGC+TGG | + | chr7_2:86386628-86386647 | None:intergenic | 40.0% | |
| GATAAACGCCGAATCTAGTA+TGG | + | chr7_2:86386655-86386674 | None:intergenic | 40.0% | |
| ! | TACCTTTTTATGATCCCCAG+AGG | + | chr7_2:86386702-86386721 | None:intergenic | 40.0% |
| CCATTTCTCTATTAACCTCG+GGG | + | chr7_2:86386827-86386846 | None:intergenic | 40.0% | |
| GCCATTTCTCTATTAACCTC+GGG | + | chr7_2:86386828-86386847 | None:intergenic | 40.0% | |
| GCCAAGGTTCTTTATAAAGC+AGG | - | chr7_2:86386858-86386877 | Msa1085590:intron | 40.0% | |
| TAAAGCAGGTGAGAAGAAAC+TGG | - | chr7_2:86386872-86386891 | Msa1085590:intron | 40.0% | |
| AAAGCAGGTGAGAAGAAACT+GGG | - | chr7_2:86386873-86386892 | Msa1085590:intron | 40.0% | |
| ATGAATGACCATAGTTGGCA+TGG | + | chr7_2:86386974-86386993 | None:intergenic | 40.0% | |
| ! | TTTTGCACACCCCTAGTTAA+GGG | + | chr7_2:86387040-86387059 | None:intergenic | 40.0% |
| ! | TTTTTGCACACCCCTAGTTA+AGG | + | chr7_2:86387041-86387060 | None:intergenic | 40.0% |
| ! | GTCCAGTTTGGTTCAGTTTA+TGG | + | chr7_2:86387085-86387104 | None:intergenic | 40.0% |
| ATTTCGAACCAGTTTCGAAC+CGG | + | chr7_2:86388936-86388955 | None:intergenic | 40.0% | |
| ! | ACCGGTTCAAAACTGTAAAC+CGG | - | chr7_2:86388962-86388981 | Msa1085590:intron | 40.0% |
| !!! | ACCGGTTTACAGTTTTGAAC+CGG | + | chr7_2:86388966-86388985 | None:intergenic | 40.0% |
| ! | GTTTAAAACCGGTTCAGAAC+CGG | + | chr7_2:86388984-86389003 | None:intergenic | 40.0% |
| ! | GTTCCAGTTCGGTTTAAAAC+CGG | + | chr7_2:86388995-86389014 | None:intergenic | 40.0% |
| !! | GTTTTAAACCGAACTGGAAC+TGG | - | chr7_2:86388995-86389014 | Msa1085590:intron | 40.0% |
| AAGACTATGGTTAAGGGTAG+GGG | + | chr7_2:86389117-86389136 | None:intergenic | 40.0% | |
| GAAGACTATGGTTAAGGGTA+GGG | + | chr7_2:86389118-86389137 | None:intergenic | 40.0% | |
| AGAAGACTATGGTTAAGGGT+AGG | + | chr7_2:86389119-86389138 | None:intergenic | 40.0% | |
| GTGAGAGAAGACTATGGTTA+AGG | + | chr7_2:86389124-86389143 | None:intergenic | 40.0% | |
| AATTCAGCTTGGATATGTGG+CGG | + | chr7_2:86389157-86389176 | None:intergenic | 40.0% | |
| ATTGCCTGATGAATTCAGCT+TGG | + | chr7_2:86389168-86389187 | None:intergenic | 40.0% | |
| GAAATACTTTGCAGGACTCT+CGG | + | chr7_2:86389247-86389266 | None:intergenic | 40.0% | |
| ! | TCCTGCAAAGTATTTCGCAA+AGG | - | chr7_2:86389251-86389270 | Msa1085590:CDS | 40.0% |
| ACCTTTGCGAAATACTTTGC+AGG | + | chr7_2:86389255-86389274 | None:intergenic | 40.0% | |
| TTATCTGTACAACAACGTGC+TGG | - | chr7_2:86389555-86389574 | Msa1085590:CDS | 40.0% | |
| CCTCATAAGTTTCGTGTCAT+CGG | + | chr7_2:86389788-86389807 | None:intergenic | 40.0% | |
| CGATGACACGAAACTTATGA+GGG | - | chr7_2:86389786-86389805 | Msa1085590:exon | 40.0% | |
| TTATGAGGGTGATTGTAACC+AGG | - | chr7_2:86389800-86389819 | Msa1085590:five_prime_UTR | 40.0% | |
| ATGTAGATCTATCTCACTCC+TGG | + | chr7_2:86389821-86389840 | None:intergenic | 40.0% | |
| ! | GTCCAAATGCATGTTTTGTG+TGG | - | chr7_2:86389960-86389979 | Msa1085590:intron | 40.0% |
| CTCCACACAAAACATGCATT+TGG | + | chr7_2:86389965-86389984 | None:intergenic | 40.0% | |
| ! | CGAAGTGTTAGTTGGCGATT+TGG | - | chr7_2:86385998-86386017 | Msa1085590:three_prime_UTR | 45.0% |
| ! | AGGAATAGGGGGTACATTCA+CGG | + | chr7_2:86386134-86386153 | None:intergenic | 45.0% |
| AGTTGCATAGCATCGTCTCT+GGG | + | chr7_2:86386163-86386182 | None:intergenic | 45.0% | |
| AAGTTGCATAGCATCGTCTC+TGG | + | chr7_2:86386164-86386183 | None:intergenic | 45.0% | |
| CAACTTCACCGTGCTTTCAA+AGG | - | chr7_2:86386178-86386197 | Msa1085590:three_prime_UTR | 45.0% | |
| CGCTTATCTTCTGAGCTTTC+TGG | - | chr7_2:86386463-86386482 | Msa1085590:intron | 45.0% | |
| TTTAAGGATGATCGCATCGC+GGG | + | chr7_2:86386540-86386559 | None:intergenic | 45.0% | |
| GTTTAAGGATGATCGCATCG+CGG | + | chr7_2:86386541-86386560 | None:intergenic | 45.0% | |
| AGACGGTCAGAGTCTGTTTA+AGG | + | chr7_2:86386556-86386575 | None:intergenic | 45.0% | |
| ! | TGCCTCTGGGGATCATAAAA+AGG | - | chr7_2:86386697-86386716 | Msa1085590:intron | 45.0% |
| CCCCGAGGTTAATAGAGAAA+TGG | - | chr7_2:86386824-86386843 | Msa1085590:intron | 45.0% | |
| ATTTATGGCAGCCAACTGTG+CGG | + | chr7_2:86386943-86386962 | None:intergenic | 45.0% | |
| !! | ACTGTAAACCGGTTCGAAAC+TGG | - | chr7_2:86388925-86388944 | Msa1085590:intron | 45.0% |
| !! | ACTGTAAACCGGTTCTGAAC+CGG | - | chr7_2:86388973-86388992 | Msa1085590:intron | 45.0% |
| !!! | GAACCGGTTTTAAACCGAAC+TGG | - | chr7_2:86388989-86389008 | Msa1085590:intron | 45.0% |
| TTTGGGAAGAAGGAGCAACT+TGG | - | chr7_2:86389411-86389430 | Msa1085590:intron | 45.0% | |
| ACGTTTGCCACTATGTATGC+AGG | - | chr7_2:86389732-86389751 | Msa1085590:CDS | 45.0% | |
| ATGTATGCAGGTCCTACGTA+AGG | - | chr7_2:86389744-86389763 | Msa1085590:CDS | 45.0% | |
| GTCCTACGTAAGGCAATGAA+AGG | - | chr7_2:86389754-86389773 | Msa1085590:CDS | 45.0% | |
| GACCTTTCATTGCCTTACGT+AGG | + | chr7_2:86389759-86389778 | None:intergenic | 45.0% | |
| ACGTAAGGCAATGAAAGGTC+TGG | - | chr7_2:86389759-86389778 | Msa1085590:CDS | 45.0% | |
| CGTAAGGCAATGAAAGGTCT+GGG | - | chr7_2:86389760-86389779 | Msa1085590:CDS | 45.0% | |
| GTAAGGCAATGAAAGGTCTG+GGG | - | chr7_2:86389761-86389780 | Msa1085590:CDS | 45.0% | |
| CCGATGACACGAAACTTATG+AGG | - | chr7_2:86389785-86389804 | Msa1085590:exon | 45.0% | |
| GCTGAATGATGCAGTTCACT+CGG | - | chr7_2:86389879-86389898 | Msa1085590:intron | 45.0% | |
| AGAGAAGAAAAGCCCTGTAG+TGG | + | chr7_2:86389915-86389934 | None:intergenic | 45.0% | |
| ! | CATTTGGACTGCTACTGGTT+GGG | + | chr7_2:86389949-86389968 | None:intergenic | 45.0% |
| ACATGCATTTGGACTGCTAC+TGG | + | chr7_2:86389954-86389973 | None:intergenic | 45.0% | |
| !! | TATATTATACTATATATTAT+TGG | + | chr7_2:86386028-86386047 | None:intergenic | 5.0% |
| !!! | TATATAGTATAATATAATTT+TGG | - | chr7_2:86386032-86386051 | Msa1085590:three_prime_UTR | 5.0% |
| !!! | ATATAGTATAATATAATTTT+GGG | - | chr7_2:86386033-86386052 | Msa1085590:three_prime_UTR | 5.0% |
| TTGCATAGCATCGTCTCTGG+GGG | + | chr7_2:86386161-86386180 | None:intergenic | 50.0% | |
| GTTGCATAGCATCGTCTCTG+GGG | + | chr7_2:86386162-86386181 | None:intergenic | 50.0% | |
| CTCATAGAGATGCCACTCAG+CGG | - | chr7_2:86386389-86386408 | Msa1085590:CDS | 50.0% | |
| TCATAGAGATGCCACTCAGC+GGG | - | chr7_2:86386390-86386409 | Msa1085590:CDS | 50.0% | |
| TATTAACCTCGGGGCCTTCA+TGG | + | chr7_2:86386818-86386837 | None:intergenic | 50.0% | |
| AATGGCTGAGAACGATGCCA+AGG | - | chr7_2:86386842-86386861 | Msa1085590:intron | 50.0% | |
| !! | GTTAAGGGTAGGGGTGTTCA+TGG | + | chr7_2:86389108-86389127 | None:intergenic | 50.0% |
| CGTAGGACCTGCATACATAG+TGG | + | chr7_2:86389742-86389761 | None:intergenic | 50.0% | |
| GCAGTTCACTCGGAAACATC+TGG | - | chr7_2:86389889-86389908 | Msa1085590:intron | 50.0% | |
| GGAAACATCTGGCCACTACA+GGG | - | chr7_2:86389900-86389919 | Msa1085590:intron | 50.0% | |
| GCATTTGGACTGCTACTGGT+TGG | + | chr7_2:86389950-86389969 | None:intergenic | 50.0% | |
| TCTGGGGGAAGGAGGAATAG+GGG | + | chr7_2:86386146-86386165 | None:intergenic | 55.0% | |
| ! | CTCTGGGGGAAGGAGGAATA+GGG | + | chr7_2:86386147-86386166 | None:intergenic | 55.0% |
| ! | TCTCTGGGGGAAGGAGGAAT+AGG | + | chr7_2:86386148-86386167 | None:intergenic | 55.0% |
| ! | ATAGCATCGTCTCTGGGGGA+AGG | + | chr7_2:86386157-86386176 | None:intergenic | 55.0% |
| TTGCAGGACTCTCGGCACAT+TGG | + | chr7_2:86389239-86389258 | None:intergenic | 55.0% | |
| CGGAAACATCTGGCCACTAC+AGG | - | chr7_2:86389899-86389918 | Msa1085590:intron | 55.0% | |
| CTGGGGGAAGGAGGAATAGG+GGG | + | chr7_2:86386145-86386164 | None:intergenic | 60.0% | |
| AAGGATGATCGCATCGCGGG+TGG | + | chr7_2:86386537-86386556 | None:intergenic | 60.0% | |
| GTAAGCACGCCACGCCATGA+AGG | - | chr7_2:86386801-86386820 | Msa1085590:intron | 60.0% | |
| ! | GCATCGTCTCTGGGGGAAGG+AGG | + | chr7_2:86386154-86386173 | None:intergenic | 65.0% |
| TTGGAGGTAGGCCCGCTGAG+TGG | + | chr7_2:86386404-86386423 | None:intergenic | 65.0% | |
| TGATCGCATCGCGGGTGGCA+GGG | + | chr7_2:86386532-86386551 | None:intergenic | 65.0% | |
| ATGATCGCATCGCGGGTGGC+AGG | + | chr7_2:86386533-86386552 | None:intergenic | 65.0% | |
| CCAACTGTGCGGCACTCCGT+TGG | + | chr7_2:86386932-86386951 | None:intergenic | 65.0% | |
| !! | CCAACGGAGTGCCGCACAGT+TGG | - | chr7_2:86386929-86386948 | Msa1085590:CDS | 65.0% |
| ACCTCGGGGCCTTCATGGCG+TGG | + | chr7_2:86386813-86386832 | None:intergenic | 70.0% | |
| GCCACGCCATGAAGGCCCCG+AGG | - | chr7_2:86386809-86386828 | Msa1085590:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 86385983 | 86390204 | 86385983 | ID=Msa1085590;Name=Msa1085590 |
| chr7_2 | mRNA | 86385983 | 86390204 | 86385983 | ID=Msa1085590-mRNA-1;Parent=Msa1085590;Name=Msa1085590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=265|1|1|1|1|0.8|5|247|276 |
| chr7_2 | exon | 86385983 | 86386433 | 86385983 | ID=Msa1085590-mRNA-1:exon:23426;Parent=Msa1085590-mRNA-1 |
| chr7_2 | exon | 86386915 | 86387004 | 86386915 | ID=Msa1085590-mRNA-1:exon:23425;Parent=Msa1085590-mRNA-1 |
| chr7_2 | exon | 86389186 | 86389401 | 86389186 | ID=Msa1085590-mRNA-1:exon:23424;Parent=Msa1085590-mRNA-1 |
| chr7_2 | exon | 86389469 | 86389837 | 86389469 | ID=Msa1085590-mRNA-1:exon:23423;Parent=Msa1085590-mRNA-1 |
| chr7_2 | exon | 86389988 | 86390204 | 86389988 | ID=Msa1085590-mRNA-1:exon:23422;Parent=Msa1085590-mRNA-1 |
| chr7_2 | five_prime_UTR | 86389988 | 86390204 | 86389988 | ID=Msa1085590-mRNA-1:five_prime_utr;Parent=Msa1085590-mRNA-1 |
| chr7_2 | five_prime_UTR | 86389790 | 86389837 | 86389790 | ID=Msa1085590-mRNA-1:five_prime_utr;Parent=Msa1085590-mRNA-1 |
| chr7_2 | CDS | 86389469 | 86389789 | 86389469 | ID=Msa1085590-mRNA-1:cds;Parent=Msa1085590-mRNA-1 |
| chr7_2 | CDS | 86389186 | 86389401 | 86389186 | ID=Msa1085590-mRNA-1:cds;Parent=Msa1085590-mRNA-1 |
| chr7_2 | CDS | 86386915 | 86387004 | 86386915 | ID=Msa1085590-mRNA-1:cds;Parent=Msa1085590-mRNA-1 |
| chr7_2 | CDS | 86386230 | 86386433 | 86386230 | ID=Msa1085590-mRNA-1:cds;Parent=Msa1085590-mRNA-1 |
| chr7_2 | three_prime_UTR | 86385983 | 86386229 | 86385983 | ID=Msa1085590-mRNA-1:three_prime_utr;Parent=Msa1085590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
