Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307990 | sp|Q9LZV3|MAN6_ARATH | 67.684 | 393 | 104 | 5 | 7 | 393 | 8 | 383 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307990 | G7LAQ6 | 95.990 | 399 | 10 | 2 | 1 | 393 | 1 | 399 | 0.0 | 790 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053000 | Msa1307990 | 0.809516 | 1.820319e-50 | -8.615850e-47 |
| Msa0058230 | Msa1307990 | 0.816101 | 6.579263e-52 | -8.615850e-47 |
| Msa0058370 | Msa1307990 | 0.818705 | 1.705456e-52 | -8.615850e-47 |
| Msa1227760 | Msa1307990 | 0.847806 | 9.156807e-60 | -8.615850e-47 |
| Msa1270840 | Msa1307990 | 0.871357 | 7.266980e-67 | -8.615850e-47 |
| Msa1307990 | Msa1363690 | 0.806598 | 7.608862e-50 | -8.615850e-47 |
| Msa1307990 | Msa1369410 | 0.873344 | 1.581209e-67 | -8.615850e-47 |
| Msa1191550 | Msa1307990 | 0.875400 | 3.175954e-68 | -8.615850e-47 |
| Msa0498610 | Msa1307990 | 0.803286 | 3.747951e-49 | -8.615850e-47 |
| Msa0557850 | Msa1307990 | 0.807697 | 4.452737e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307990 | MtrunA17_Chr8g0334501 | 95.739 | 399 | 10 | 3 | 1 | 393 | 1 | 398 | 0.0 | 785 |
| Msa1307990 | MtrunA17_Chr7g0245051 | 80.220 | 364 | 62 | 3 | 40 | 393 | 32 | 395 | 0.0 | 619 |
| Msa1307990 | MtrunA17_Chr7g0245101 | 75.325 | 385 | 84 | 4 | 27 | 400 | 19 | 403 | 0.0 | 607 |
| Msa1307990 | MtrunA17_Chr4g0020521 | 52.083 | 336 | 152 | 3 | 64 | 393 | 35 | 367 | 3.53e-129 | 379 |
| Msa1307990 | MtrunA17_Chr1g0193531 | 52.907 | 344 | 153 | 4 | 64 | 401 | 30 | 370 | 1.02e-128 | 377 |
| Msa1307990 | MtrunA17_Chr5g0404601 | 53.623 | 345 | 151 | 4 | 56 | 393 | 24 | 366 | 2.89e-128 | 377 |
| Msa1307990 | MtrunA17_Chr1g0193611 | 52.679 | 336 | 151 | 3 | 64 | 393 | 33 | 366 | 3.17e-128 | 376 |
| Msa1307990 | MtrunA17_Chr3g0141751 | 51.453 | 344 | 153 | 5 | 58 | 393 | 21 | 358 | 4.53e-125 | 368 |
| Msa1307990 | MtrunA17_Chr1g0193551 | 53.571 | 336 | 146 | 5 | 64 | 393 | 36 | 367 | 1.39e-124 | 367 |
| Msa1307990 | MtrunA17_Chr4g0040121 | 49.296 | 355 | 169 | 5 | 50 | 393 | 23 | 377 | 3.42e-124 | 367 |
| Msa1307990 | MtrunA17_Chr1g0193601 | 52.381 | 336 | 152 | 3 | 64 | 393 | 33 | 366 | 4.68e-124 | 365 |
| Msa1307990 | MtrunA17_Chr7g0271511 | 49.725 | 364 | 164 | 5 | 41 | 398 | 47 | 397 | 8.99e-124 | 365 |
| Msa1307990 | MtrunA17_Chr2g0324441 | 47.399 | 346 | 173 | 4 | 57 | 393 | 34 | 379 | 4.30e-117 | 348 |
| Msa1307990 | MtrunA17_Chr1g0193541 | 46.746 | 338 | 135 | 6 | 64 | 393 | 32 | 332 | 4.11e-99 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1307990 | AT5G01930.1 | 67.684 | 393 | 104 | 5 | 7 | 393 | 8 | 383 | 0.0 | 554 |
| Msa1307990 | AT4G28320.1 | 49.854 | 343 | 165 | 3 | 58 | 393 | 36 | 378 | 1.04e-122 | 363 |
| Msa1307990 | AT3G10900.1 | 50.284 | 352 | 166 | 5 | 64 | 407 | 30 | 380 | 1.49e-122 | 362 |
| Msa1307990 | AT3G10890.1 | 49.852 | 337 | 161 | 4 | 64 | 393 | 32 | 367 | 3.45e-122 | 361 |
| Msa1307990 | AT2G20680.1 | 50.146 | 343 | 164 | 3 | 58 | 393 | 37 | 379 | 6.81e-122 | 361 |
| Msa1307990 | AT5G66460.1 | 50.595 | 336 | 157 | 3 | 64 | 393 | 32 | 364 | 4.74e-118 | 351 |
| Msa1307990 | AT1G02310.1 | 48.529 | 340 | 159 | 7 | 64 | 393 | 30 | 363 | 1.72e-109 | 329 |
| Msa1307990 | AT1G02310.2 | 48.529 | 340 | 159 | 7 | 64 | 393 | 50 | 383 | 3.22e-109 | 329 |
| Msa1307990 | AT3G30540.1 | 45.427 | 328 | 146 | 3 | 64 | 390 | 30 | 325 | 9.30e-99 | 298 |
Find 113 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGTTGAGCATATGAATT+TGG | 0.114525 | 8_4:-4088636 | None:intergenic |
| GGCCAACCTTTCTATGTAAA+TGG | 0.174562 | 8_4:+4087650 | Msa1307990:CDS |
| CCAAATTCCATCTTAACTTA+TGG | 0.180101 | 8_4:+4087470 | Msa1307990:CDS |
| TAAATGGATTCAACACTTAT+TGG | 0.258205 | 8_4:+4087666 | Msa1307990:CDS |
| CCATAAGTTAAGATGGAATT+TGG | 0.274969 | 8_4:-4087470 | None:intergenic |
| GAAAGGAAATAACACATAAT+TGG | 0.289737 | 8_4:-4087358 | None:intergenic |
| CAGAGCAGAGGGAGTTGAAT+AGG | 0.306615 | 8_4:-4089193 | None:intergenic |
| GTTGGCCATTCACTACAAAT+TGG | 0.308540 | 8_4:-4087634 | None:intergenic |
| CTCCTCTGGTGATACGTTAC+AGG | 0.324607 | 8_4:+4088254 | Msa1307990:CDS |
| CAAATTCCATCTTAACTTAT+GGG | 0.334308 | 8_4:+4087471 | Msa1307990:CDS |
| TATTATCATTGGTTAACAAT+TGG | 0.335350 | 8_4:+4087903 | Msa1307990:CDS |
| ATCAGAAACCACCAGGTTCT+AGG | 0.336789 | 8_4:+4088672 | Msa1307990:CDS |
| CCCAAATTCATATGCTCAAC+AGG | 0.348303 | 8_4:+4088635 | Msa1307990:CDS |
| ACTCACAAATATCACTTATA+AGG | 0.349810 | 8_4:+4088176 | Msa1307990:CDS |
| ATTCAACACTTATTGGTTGA+TGG | 0.357211 | 8_4:+4087673 | Msa1307990:CDS |
| TTGAATCCATTTACATAGAA+AGG | 0.367924 | 8_4:-4087656 | None:intergenic |
| ATTATCATTGGTTAACAATT+GGG | 0.370572 | 8_4:+4087904 | Msa1307990:CDS |
| GTATGACAGTTTGTAGGACT+TGG | 0.375713 | 8_4:+4087762 | Msa1307990:intron |
| AAGACTTCACAAATGGGATA+TGG | 0.386757 | 8_4:-4088875 | None:intergenic |
| CTACTGGAGATTGGCCTAGA+AGG | 0.395563 | 8_4:+4088573 | Msa1307990:CDS |
| TTCTCACATCCAACTCTAAG+AGG | 0.402284 | 8_4:+4088004 | Msa1307990:CDS |
| CAGTTGGTATGACAGTTTGT+AGG | 0.408046 | 8_4:+4087756 | Msa1307990:intron |
| TTCTGGTTTAAGGAGTGAAA+TGG | 0.417044 | 8_4:+4087574 | Msa1307990:intron |
| GTCAAGTGGGGCAATGCTGC+TGG | 0.420167 | 8_4:+4087953 | Msa1307990:CDS |
| AATCAGACTCATATTATCAT+TGG | 0.423314 | 8_4:+4087892 | Msa1307990:CDS |
| TCTCCATTGGCCATCATTGA+AGG | 0.427709 | 8_4:-4087786 | None:intergenic |
| TCCATCCAAGACTTCACAAA+TGG | 0.428524 | 8_4:-4088882 | None:intergenic |
| CCAATCTCCAGTAGGTGTTT+CGG | 0.433449 | 8_4:-4088564 | None:intergenic |
| AGGGGCCATAAAATCCTTCT+AGG | 0.439788 | 8_4:-4088587 | None:intergenic |
| AAGGAACCTTACCAAGAGTC+TGG | 0.441773 | 8_4:-4088723 | None:intergenic |
| ATTTCTGAAGGGCTCTCCAT+TGG | 0.442818 | 8_4:-4087799 | None:intergenic |
| GAGGATGCTGAAAAGTATCT+TGG | 0.444822 | 8_4:+4088915 | Msa1307990:CDS |
| ATGACACTGAATATGAAGAT+TGG | 0.449152 | 8_4:+4087429 | Msa1307990:CDS |
| AGAGCAGAGGGAGTTGAATA+GGG | 0.450240 | 8_4:-4089192 | None:intergenic |
| GGAAACCAATTTGTAGTGAA+TGG | 0.455801 | 8_4:+4087629 | Msa1307990:CDS |
| GTTAACAATTGGGAGGCATA+TGG | 0.457775 | 8_4:+4087914 | Msa1307990:CDS |
| CCTGTTGAGCATATGAATTT+GGG | 0.458492 | 8_4:-4088635 | None:intergenic |
| CCGAAACACCTACTGGAGAT+TGG | 0.462360 | 8_4:+4088564 | Msa1307990:CDS |
| TGAAATCTCTGAGGTGTTGA+GGG | 0.462829 | 8_4:-4088606 | None:intergenic |
| ATATCCCATTTGTGAAGTCT+TGG | 0.463092 | 8_4:+4088877 | Msa1307990:CDS |
| GATATCATGCTTGAAATAGA+AGG | 0.473952 | 8_4:-4089149 | None:intergenic |
| ATCCATTTACATAGAAAGGT+TGG | 0.475778 | 8_4:-4087652 | None:intergenic |
| GGGCAAGCCTTGTGGATTGA+AGG | 0.483170 | 8_4:-4089172 | None:intergenic |
| AGGACTTGGGCCTTCAATGA+TGG | 0.484180 | 8_4:+4087776 | Msa1307990:CDS |
| ATTCTAAACTCTACAAAGAA+AGG | 0.486329 | 8_4:+4089035 | Msa1307990:CDS |
| ACATGCATACACACTCTGGC+TGG | 0.489169 | 8_4:+4087300 | None:intergenic |
| CGTTGATCCGAAACACCTAC+TGG | 0.492407 | 8_4:+4088557 | Msa1307990:CDS |
| CGATGCACCTCTGACTCCTC+TGG | 0.493066 | 8_4:+4088240 | Msa1307990:CDS |
| TTGTAGTAGCCTCTTAGAGT+TGG | 0.493262 | 8_4:-4088013 | None:intergenic |
| AAGAAAGGAGGTAGTGGGGC+TGG | 0.494489 | 8_4:+4089050 | Msa1307990:CDS |
| GGTGTATCTGCAAAAGATCC+TGG | 0.494622 | 8_4:+4088963 | Msa1307990:CDS |
| CTCATATATATCCAGACTCT+TGG | 0.494942 | 8_4:+4088712 | Msa1307990:CDS |
| TACGTACCCATAAGTTAAGA+TGG | 0.495593 | 8_4:-4087477 | None:intergenic |
| TGGCTGGGTAACATAACATA+TGG | 0.496590 | 8_4:+4087316 | Msa1307990:exon |
| CTTCACTCACCACAAAATCC+AGG | 0.501627 | 8_4:-4087856 | None:intergenic |
| CAGGAAAGAACTGCCACAAA+AGG | 0.501942 | 8_4:-4089076 | None:intergenic |
| CTATATGTTGAATTATAACC+AGG | 0.502559 | 8_4:-4088981 | None:intergenic |
| TATGACAGTTTGTAGGACTT+GGG | 0.504511 | 8_4:+4087763 | Msa1307990:intron |
| TGGCAGATGGTGCAAAAGAA+AGG | 0.506336 | 8_4:+4087608 | Msa1307990:CDS |
| CCCATTTGTGAAGTCTTGGA+TGG | 0.515184 | 8_4:+4088881 | Msa1307990:CDS |
| TTCAAACATGCATTCTCAGT+TGG | 0.518806 | 8_4:+4087740 | Msa1307990:CDS |
| TGACACTGAATATGAAGATT+GGG | 0.520692 | 8_4:+4087430 | Msa1307990:CDS |
| CCATCCAAGACTTCACAAAT+GGG | 0.521998 | 8_4:-4088881 | None:intergenic |
| TCCTGATGGAACAGATTACA+TGG | 0.526606 | 8_4:+4089094 | Msa1307990:intron |
| CTGAAATCTCTGAGGTGTTG+AGG | 0.529947 | 8_4:-4088607 | None:intergenic |
| TTTGTGAAGTCTTGGATGGA+AGG | 0.530165 | 8_4:+4088885 | Msa1307990:CDS |
| GCAAAGCACAGTATGTCAAG+TGG | 0.532392 | 8_4:+4087939 | Msa1307990:CDS |
| TCTACAAAGAAAGGAGGTAG+TGG | 0.533604 | 8_4:+4089044 | Msa1307990:CDS |
| CATCATCAGAGGTCAAGTTA+AGG | 0.540046 | 8_4:-4087976 | None:intergenic |
| ATCAAACGCAGTTGAGCTGA+AGG | 0.540754 | 8_4:-4087408 | None:intergenic |
| CTACAAAGAAAGGAGGTAGT+GGG | 0.553421 | 8_4:+4089045 | Msa1307990:CDS |
| CGGATGAGTCGACAAGAGGA+AGG | 0.554210 | 8_4:+4087705 | Msa1307990:CDS |
| CATGCATACACACTCTGGCT+GGG | 0.554834 | 8_4:+4087301 | None:intergenic |
| AAAGTGATGGTGATTTCTGA+AGG | 0.556976 | 8_4:-4087811 | None:intergenic |
| GGCAAGCCTTGTGGATTGAA+GGG | 0.560023 | 8_4:-4089171 | None:intergenic |
| CAAAGTCGACACCTAGAACC+TGG | 0.561106 | 8_4:-4088683 | None:intergenic |
| AATTCATATGCTCAACAGGT+TGG | 0.561704 | 8_4:+4088639 | Msa1307990:CDS |
| CAAAGCACAGTATGTCAAGT+GGG | 0.561874 | 8_4:+4087940 | Msa1307990:CDS |
| TTAGGAATGGATAAAAGAGA+TGG | 0.562372 | 8_4:+4088518 | Msa1307990:intron |
| GTGAAATGGAGGAAGCTGAA+TGG | 0.564983 | 8_4:+4087588 | Msa1307990:CDS |
| GTGGCATCTCTCAGAGCAGA+GGG | 0.567107 | 8_4:-4089204 | None:intergenic |
| CAATACATGCATACACACTC+TGG | 0.570822 | 8_4:+4087296 | None:intergenic |
| TGGTTTAAGGAGTGAAATGG+AGG | 0.578038 | 8_4:+4087577 | Msa1307990:intron |
| ATCATTGGTTAACAATTGGG+AGG | 0.578607 | 8_4:+4087907 | Msa1307990:CDS |
| GTTGAATAGGGCAAGCCTTG+TGG | 0.579100 | 8_4:-4089180 | None:intergenic |
| GACAAGAGGAAGGGTCACTC+AGG | 0.585832 | 8_4:+4087715 | Msa1307990:CDS |
| AACTCTAAGAGGCTACTACA+AGG | 0.588864 | 8_4:+4088015 | Msa1307990:CDS |
| CTTCTAGGCCAATCTCCAGT+AGG | 0.593952 | 8_4:-4088572 | None:intergenic |
| GGGCCTTCAATGATGGCCAA+TGG | 0.595028 | 8_4:+4087783 | Msa1307990:CDS |
| CGTATCACCAGAGGAGTCAG+AGG | 0.597961 | 8_4:-4088247 | None:intergenic |
| CTAAACTCTACAAAGAAAGG+AGG | 0.610072 | 8_4:+4089038 | Msa1307990:CDS |
| ACTACTTCATCATAAAGTGA+TGG | 0.615191 | 8_4:-4087824 | None:intergenic |
| TGAAAAGTATCTTGGAATGC+CGG | 0.623758 | 8_4:+4088923 | Msa1307990:CDS |
| AACAATTGGGAGGCATATGG+TGG | 0.626650 | 8_4:+4087917 | Msa1307990:CDS |
| TTGGATGGAAGGCCACATAG+AGG | 0.626696 | 8_4:+4088896 | Msa1307990:CDS |
| TTCACTCACCACAAAATCCA+GGG | 0.626794 | 8_4:-4087855 | None:intergenic |
| AGTGGCATCTCTCAGAGCAG+AGG | 0.630497 | 8_4:-4089205 | None:intergenic |
| GGAACTTAATTACCTTGACA+TGG | 0.634912 | 8_4:-4088039 | None:intergenic |
| TTGGTTGATGGTATTTGCTG+CGG | 0.640214 | 8_4:+4087685 | Msa1307990:CDS |
| GAAATCTCTGAGGTGTTGAG+GGG | 0.645814 | 8_4:-4088605 | None:intergenic |
| GCTGCGGATGAGTCGACAAG+AGG | 0.648322 | 8_4:+4087701 | Msa1307990:CDS |
| AAGTGATGGTGATTTCTGAA+GGG | 0.650216 | 8_4:-4087810 | None:intergenic |
| TACAAAGAAAGGAGGTAGTG+GGG | 0.655170 | 8_4:+4089046 | Msa1307990:CDS |
| CTACTACAAGGACCATGTCA+AGG | 0.659291 | 8_4:+4088027 | Msa1307990:CDS |
| GGAGGAAGCTGAATGGCAGA+TGG | 0.662800 | 8_4:+4087595 | Msa1307990:CDS |
| GGATGAGTCGACAAGAGGAA+GGG | 0.663089 | 8_4:+4087706 | Msa1307990:CDS |
| TGATATCCCTTCAATCCACA+AGG | 0.672007 | 8_4:+4089165 | Msa1307990:CDS |
| GGAACAGATTACATGGACGA+TGG | 0.692260 | 8_4:+4089101 | Msa1307990:intron |
| AAAGCACAGTATGTCAAGTG+GGG | 0.694927 | 8_4:+4087941 | Msa1307990:CDS |
| TACCTGTAACGTATCACCAG+AGG | 0.699288 | 8_4:-4088256 | None:intergenic |
| GGGTTGAACTGAAATCTCTG+AGG | 0.711750 | 8_4:-4088615 | None:intergenic |
| GAGGAGTCAGAGGTGCATCG+AGG | 0.724283 | 8_4:-4088237 | None:intergenic |
| AGTCGACACCTAGAACCTGG+TGG | 0.780190 | 8_4:-4088680 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGAAATTTTTATTAATAAAT+TGG | - | chr8_4:4088380-4088399 | None:intergenic | 10.0% |
| !!! | GGAAATTTTTATTAATAAAT+TGG | - | chr8_4:4088380-4088399 | None:intergenic | 10.0% |
| !! | TGTTAATTCTAATTAACTTT+AGG | + | chr8_4:4087529-4087548 | Msa1307990:intron | 15.0% |
| !! | AATTAAATATATATGGTTTC+TGG | + | chr8_4:4087557-4087576 | Msa1307990:intron | 15.0% |
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | - | chr8_4:4088096-4088115 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | + | chr8_4:4088096-4088115 | Msa1307990:intron | 15.0% |
| !! | TTAGATGTTTAAAGAAATAA+TGG | - | chr8_4:4088808-4088827 | None:intergenic | 15.0% |
| !! | TGTTAATTCTAATTAACTTT+AGG | + | chr8_4:4087529-4087548 | Msa1307990:intron | 15.0% |
| !! | AATTAAATATATATGGTTTC+TGG | + | chr8_4:4087557-4087576 | Msa1307990:intron | 15.0% |
| !!! | AATTAGTTTAAAAGAAAAAC+AGG | - | chr8_4:4088096-4088115 | None:intergenic | 15.0% |
| !!! | GTTTTTCTTTTAAACTAATT+TGG | + | chr8_4:4088096-4088115 | Msa1307990:intron | 15.0% |
| !! | TTAGATGTTTAAAGAAATAA+TGG | - | chr8_4:4088808-4088827 | None:intergenic | 15.0% |
| !! | ATTATTATTATTAGAGTCTC+AGG | + | chr8_4:4087505-4087524 | Msa1307990:intron | 20.0% |
| !! | GGCACTTAATTAAATATATA+TGG | + | chr8_4:4087550-4087569 | Msa1307990:intron | 20.0% |
| !!! | TATTATCATTGGTTAACAAT+TGG | + | chr8_4:4087903-4087922 | Msa1307990:CDS | 20.0% |
| !!! | ATTATCATTGGTTAACAATT+GGG | + | chr8_4:4087904-4087923 | Msa1307990:CDS | 20.0% |
| !! | GCAATATTATTATTGTGTTT+GGG | - | chr8_4:4088439-4088458 | None:intergenic | 20.0% |
| !! | TGCAATATTATTATTGTGTT+TGG | - | chr8_4:4088440-4088459 | None:intergenic | 20.0% |
| !! | AATATATTCAATTGAGTTCA+AGG | - | chr8_4:4088496-4088515 | None:intergenic | 20.0% |
| !! | CTCAATTGAATATATTCTTT+AGG | + | chr8_4:4088500-4088519 | Msa1307990:intron | 20.0% |
| !!! | TTGAATATATTCTTTAGGAA+TGG | + | chr8_4:4088505-4088524 | Msa1307990:intron | 20.0% |
| !! | ATGTTTAAAGAAATAATGGT+TGG | - | chr8_4:4088804-4088823 | None:intergenic | 20.0% |
| !! | ATTATTATTATTAGAGTCTC+AGG | + | chr8_4:4087505-4087524 | Msa1307990:intron | 20.0% |
| !! | GGCACTTAATTAAATATATA+TGG | + | chr8_4:4087550-4087569 | Msa1307990:intron | 20.0% |
| !!! | TATTATCATTGGTTAACAAT+TGG | + | chr8_4:4087903-4087922 | Msa1307990:CDS | 20.0% |
| !!! | ATTATCATTGGTTAACAATT+GGG | + | chr8_4:4087904-4087923 | Msa1307990:CDS | 20.0% |
| !! | GCAATATTATTATTGTGTTT+GGG | - | chr8_4:4088439-4088458 | None:intergenic | 20.0% |
| !! | TGCAATATTATTATTGTGTT+TGG | - | chr8_4:4088440-4088459 | None:intergenic | 20.0% |
| !! | AATATATTCAATTGAGTTCA+AGG | - | chr8_4:4088496-4088515 | None:intergenic | 20.0% |
| !! | CTCAATTGAATATATTCTTT+AGG | + | chr8_4:4088500-4088519 | Msa1307990:intron | 20.0% |
| !!! | TTGAATATATTCTTTAGGAA+TGG | + | chr8_4:4088505-4088524 | Msa1307990:intron | 20.0% |
| !! | ATGTTTAAAGAAATAATGGT+TGG | - | chr8_4:4088804-4088823 | None:intergenic | 20.0% |
| ! | GAAAGGAAATAACACATAAT+TGG | - | chr8_4:4087361-4087380 | None:intergenic | 25.0% |
| ! | AATAGTGAGAAAAATGAGAA+AGG | - | chr8_4:4087378-4087397 | None:intergenic | 25.0% |
| ! | CAAATTCCATCTTAACTTAT+GGG | + | chr8_4:4087471-4087490 | Msa1307990:CDS | 25.0% |
| !!! | TATATATGGTTTCTGGTTTA+AGG | + | chr8_4:4087564-4087583 | Msa1307990:intron | 25.0% |
| ! | TTGAATCCATTTACATAGAA+AGG | - | chr8_4:4087659-4087678 | None:intergenic | 25.0% |
| !! | TAAATGGATTCAACACTTAT+TGG | + | chr8_4:4087666-4087685 | Msa1307990:CDS | 25.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | + | chr8_4:4087832-4087851 | Msa1307990:intron | 25.0% |
| ! | AATCAGACTCATATTATCAT+TGG | + | chr8_4:4087892-4087911 | Msa1307990:CDS | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | - | chr8_4:4088124-4088143 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | + | chr8_4:4088176-4088195 | Msa1307990:CDS | 25.0% |
| ! | TTGTTTCAAAGAGTTCAAAT+TGG | - | chr8_4:4088330-4088349 | None:intergenic | 25.0% |
| ! | TAATAAATTGGCGCTAAAAA+GGG | - | chr8_4:4088368-4088387 | None:intergenic | 25.0% |
| ! | TTAATAAATTGGCGCTAAAA+AGG | - | chr8_4:4088369-4088388 | None:intergenic | 25.0% |
| ! | ATGGAAAAAAGTAGAAAAGA+GGG | - | chr8_4:4088401-4088420 | None:intergenic | 25.0% |
| ! | TATGGAAAAAAGTAGAAAAG+AGG | - | chr8_4:4088402-4088421 | None:intergenic | 25.0% |
| !!! | TGGGTTTGTTTTTGAAAATA+TGG | - | chr8_4:4088420-4088439 | None:intergenic | 25.0% |
| ! | TCTTTAAACATCTAACATTC+AGG | + | chr8_4:4088813-4088832 | Msa1307990:intron | 25.0% |
| ! | CTATATGTTGAATTATAACC+AGG | - | chr8_4:4088984-4089003 | None:intergenic | 25.0% |
| ! | ATTCTAAACTCTACAAAGAA+AGG | + | chr8_4:4089035-4089054 | Msa1307990:CDS | 25.0% |
| ! | GAAAGGAAATAACACATAAT+TGG | - | chr8_4:4087361-4087380 | None:intergenic | 25.0% |
| ! | AATAGTGAGAAAAATGAGAA+AGG | - | chr8_4:4087378-4087397 | None:intergenic | 25.0% |
| ! | CAAATTCCATCTTAACTTAT+GGG | + | chr8_4:4087471-4087490 | Msa1307990:CDS | 25.0% |
| !!! | TATATATGGTTTCTGGTTTA+AGG | + | chr8_4:4087564-4087583 | Msa1307990:intron | 25.0% |
| ! | TTGAATCCATTTACATAGAA+AGG | - | chr8_4:4087659-4087678 | None:intergenic | 25.0% |
| !! | TAAATGGATTCAACACTTAT+TGG | + | chr8_4:4087666-4087685 | Msa1307990:CDS | 25.0% |
| ! | TTATGATGAAGTAGTATTCA+AGG | + | chr8_4:4087832-4087851 | Msa1307990:intron | 25.0% |
| ! | AATCAGACTCATATTATCAT+TGG | + | chr8_4:4087892-4087911 | Msa1307990:CDS | 25.0% |
| ! | GATCAATCAAGAAATAGTAT+AGG | - | chr8_4:4088124-4088143 | None:intergenic | 25.0% |
| ! | ACTCACAAATATCACTTATA+AGG | + | chr8_4:4088176-4088195 | Msa1307990:CDS | 25.0% |
| ! | TTGTTTCAAAGAGTTCAAAT+TGG | - | chr8_4:4088330-4088349 | None:intergenic | 25.0% |
| ! | TAATAAATTGGCGCTAAAAA+GGG | - | chr8_4:4088368-4088387 | None:intergenic | 25.0% |
| ! | TTAATAAATTGGCGCTAAAA+AGG | - | chr8_4:4088369-4088388 | None:intergenic | 25.0% |
| ! | ATGGAAAAAAGTAGAAAAGA+GGG | - | chr8_4:4088401-4088420 | None:intergenic | 25.0% |
| ! | TATGGAAAAAAGTAGAAAAG+AGG | - | chr8_4:4088402-4088421 | None:intergenic | 25.0% |
| !!! | TGGGTTTGTTTTTGAAAATA+TGG | - | chr8_4:4088420-4088439 | None:intergenic | 25.0% |
| ! | TCTTTAAACATCTAACATTC+AGG | + | chr8_4:4088813-4088832 | Msa1307990:intron | 25.0% |
| ! | CTATATGTTGAATTATAACC+AGG | - | chr8_4:4088984-4089003 | None:intergenic | 25.0% |
| ! | ATTCTAAACTCTACAAAGAA+AGG | + | chr8_4:4089035-4089054 | Msa1307990:CDS | 25.0% |
| ATGACACTGAATATGAAGAT+TGG | + | chr8_4:4087429-4087448 | Msa1307990:CDS | 30.0% | |
| TGACACTGAATATGAAGATT+GGG | + | chr8_4:4087430-4087449 | Msa1307990:CDS | 30.0% | |
| CCATAAGTTAAGATGGAATT+TGG | - | chr8_4:4087473-4087492 | None:intergenic | 30.0% | |
| CCAAATTCCATCTTAACTTA+TGG | + | chr8_4:4087470-4087489 | Msa1307990:CDS | 30.0% | |
| ATCCATTTACATAGAAAGGT+TGG | - | chr8_4:4087655-4087674 | None:intergenic | 30.0% | |
| ! | ATTCAACACTTATTGGTTGA+TGG | + | chr8_4:4087673-4087692 | Msa1307990:CDS | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | - | chr8_4:4087827-4087846 | None:intergenic | 30.0% | |
| !!! | AACAGGAAGCATTAAGTTTT+AGG | - | chr8_4:4088079-4088098 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | + | chr8_4:4088199-4088218 | Msa1307990:CDS | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | + | chr8_4:4088200-4088219 | Msa1307990:CDS | 30.0% |
| AATAAATTGGCGCTAAAAAG+GGG | - | chr8_4:4088367-4088386 | None:intergenic | 30.0% | |
| TTAGGAATGGATAAAAGAGA+TGG | + | chr8_4:4088518-4088537 | Msa1307990:intron | 30.0% | |
| TACTTAAGTAGAAGTCATCA+AGG | - | chr8_4:4088749-4088768 | None:intergenic | 30.0% | |
| GATATCATGCTTGAAATAGA+AGG | - | chr8_4:4089152-4089171 | None:intergenic | 30.0% | |
| ATGACACTGAATATGAAGAT+TGG | + | chr8_4:4087429-4087448 | Msa1307990:CDS | 30.0% | |
| TGACACTGAATATGAAGATT+GGG | + | chr8_4:4087430-4087449 | Msa1307990:CDS | 30.0% | |
| CCATAAGTTAAGATGGAATT+TGG | - | chr8_4:4087473-4087492 | None:intergenic | 30.0% | |
| CCAAATTCCATCTTAACTTA+TGG | + | chr8_4:4087470-4087489 | Msa1307990:CDS | 30.0% | |
| ATCCATTTACATAGAAAGGT+TGG | - | chr8_4:4087655-4087674 | None:intergenic | 30.0% | |
| ! | ATTCAACACTTATTGGTTGA+TGG | + | chr8_4:4087673-4087692 | Msa1307990:CDS | 30.0% |
| ACTACTTCATCATAAAGTGA+TGG | - | chr8_4:4087827-4087846 | None:intergenic | 30.0% | |
| !!! | AACAGGAAGCATTAAGTTTT+AGG | - | chr8_4:4088079-4088098 | None:intergenic | 30.0% |
| ! | AAGATCCAACAATTTTTGCT+TGG | + | chr8_4:4088199-4088218 | Msa1307990:CDS | 30.0% |
| ! | AGATCCAACAATTTTTGCTT+GGG | + | chr8_4:4088200-4088219 | Msa1307990:CDS | 30.0% |
| AATAAATTGGCGCTAAAAAG+GGG | - | chr8_4:4088367-4088386 | None:intergenic | 30.0% | |
| TTAGGAATGGATAAAAGAGA+TGG | + | chr8_4:4088518-4088537 | Msa1307990:intron | 30.0% | |
| TACTTAAGTAGAAGTCATCA+AGG | - | chr8_4:4088749-4088768 | None:intergenic | 30.0% | |
| GATATCATGCTTGAAATAGA+AGG | - | chr8_4:4089152-4089171 | None:intergenic | 30.0% | |
| TACGTACCCATAAGTTAAGA+TGG | - | chr8_4:4087480-4087499 | None:intergenic | 35.0% | |
| !! | TTCTGGTTTAAGGAGTGAAA+TGG | + | chr8_4:4087574-4087593 | Msa1307990:intron | 35.0% |
| GGAAACCAATTTGTAGTGAA+TGG | + | chr8_4:4087629-4087648 | Msa1307990:CDS | 35.0% | |
| TTCAAACATGCATTCTCAGT+TGG | + | chr8_4:4087740-4087759 | Msa1307990:CDS | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | + | chr8_4:4087763-4087782 | Msa1307990:intron | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | - | chr8_4:4087813-4087832 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | - | chr8_4:4087814-4087833 | None:intergenic | 35.0% |
| ! | ATCATTGGTTAACAATTGGG+AGG | + | chr8_4:4087907-4087926 | Msa1307990:CDS | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | - | chr8_4:4087990-4088009 | None:intergenic | 35.0% | |
| GGAACTTAATTACCTTGACA+TGG | - | chr8_4:4088042-4088061 | None:intergenic | 35.0% | |
| !! | TTTTAGGTACATCTCAAGCT+AGG | - | chr8_4:4088063-4088082 | None:intergenic | 35.0% |
| ATAAATTGGCGCTAAAAAGG+GGG | - | chr8_4:4088366-4088385 | None:intergenic | 35.0% | |
| !! | ATTGGCCTAGAAGGATTTTA+TGG | + | chr8_4:4088582-4088601 | Msa1307990:CDS | 35.0% |
| CCTGTTGAGCATATGAATTT+GGG | - | chr8_4:4088638-4088657 | None:intergenic | 35.0% | |
| ACCTGTTGAGCATATGAATT+TGG | - | chr8_4:4088639-4088658 | None:intergenic | 35.0% | |
| AATTCATATGCTCAACAGGT+TGG | + | chr8_4:4088639-4088658 | Msa1307990:CDS | 35.0% | |
| ! | TGATTTTATCAGAAACCACC+AGG | + | chr8_4:4088665-4088684 | Msa1307990:CDS | 35.0% |
| CTCATATATATCCAGACTCT+TGG | + | chr8_4:4088712-4088731 | Msa1307990:CDS | 35.0% | |
| ATATATCCAGACTCTTGGTA+AGG | + | chr8_4:4088717-4088736 | Msa1307990:intron | 35.0% | |
| TAAGTAGAAGTCATCAAGGA+AGG | - | chr8_4:4088745-4088764 | None:intergenic | 35.0% | |
| GATTGTGAAATCCTTCAACA+AGG | - | chr8_4:4088843-4088862 | None:intergenic | 35.0% | |
| AAGACTTCACAAATGGGATA+TGG | - | chr8_4:4088878-4088897 | None:intergenic | 35.0% | |
| ATATCCCATTTGTGAAGTCT+TGG | + | chr8_4:4088877-4088896 | Msa1307990:CDS | 35.0% | |
| !! | TGAAAAGTATCTTGGAATGC+CGG | + | chr8_4:4088923-4088942 | Msa1307990:CDS | 35.0% |
| CTAAACTCTACAAAGAAAGG+AGG | + | chr8_4:4089038-4089057 | Msa1307990:CDS | 35.0% | |
| TACGTACCCATAAGTTAAGA+TGG | - | chr8_4:4087480-4087499 | None:intergenic | 35.0% | |
| !! | TTCTGGTTTAAGGAGTGAAA+TGG | + | chr8_4:4087574-4087593 | Msa1307990:intron | 35.0% |
| GGAAACCAATTTGTAGTGAA+TGG | + | chr8_4:4087629-4087648 | Msa1307990:CDS | 35.0% | |
| TTCAAACATGCATTCTCAGT+TGG | + | chr8_4:4087740-4087759 | Msa1307990:CDS | 35.0% | |
| TATGACAGTTTGTAGGACTT+GGG | + | chr8_4:4087763-4087782 | Msa1307990:intron | 35.0% | |
| ! | AAGTGATGGTGATTTCTGAA+GGG | - | chr8_4:4087813-4087832 | None:intergenic | 35.0% |
| ! | AAAGTGATGGTGATTTCTGA+AGG | - | chr8_4:4087814-4087833 | None:intergenic | 35.0% |
| ! | ATCATTGGTTAACAATTGGG+AGG | + | chr8_4:4087907-4087926 | Msa1307990:CDS | 35.0% |
| TGAGAAAAAGTCATCATCAG+AGG | - | chr8_4:4087990-4088009 | None:intergenic | 35.0% | |
| GGAACTTAATTACCTTGACA+TGG | - | chr8_4:4088042-4088061 | None:intergenic | 35.0% | |
| !! | TTTTAGGTACATCTCAAGCT+AGG | - | chr8_4:4088063-4088082 | None:intergenic | 35.0% |
| ATAAATTGGCGCTAAAAAGG+GGG | - | chr8_4:4088366-4088385 | None:intergenic | 35.0% | |
| !! | ATTGGCCTAGAAGGATTTTA+TGG | + | chr8_4:4088582-4088601 | Msa1307990:CDS | 35.0% |
| CCTGTTGAGCATATGAATTT+GGG | - | chr8_4:4088638-4088657 | None:intergenic | 35.0% | |
| ACCTGTTGAGCATATGAATT+TGG | - | chr8_4:4088639-4088658 | None:intergenic | 35.0% | |
| AATTCATATGCTCAACAGGT+TGG | + | chr8_4:4088639-4088658 | Msa1307990:CDS | 35.0% | |
| ! | TGATTTTATCAGAAACCACC+AGG | + | chr8_4:4088665-4088684 | Msa1307990:CDS | 35.0% |
| CTCATATATATCCAGACTCT+TGG | + | chr8_4:4088712-4088731 | Msa1307990:CDS | 35.0% | |
| ATATATCCAGACTCTTGGTA+AGG | + | chr8_4:4088717-4088736 | Msa1307990:intron | 35.0% | |
| TAAGTAGAAGTCATCAAGGA+AGG | - | chr8_4:4088745-4088764 | None:intergenic | 35.0% | |
| GATTGTGAAATCCTTCAACA+AGG | - | chr8_4:4088843-4088862 | None:intergenic | 35.0% | |
| AAGACTTCACAAATGGGATA+TGG | - | chr8_4:4088878-4088897 | None:intergenic | 35.0% | |
| ATATCCCATTTGTGAAGTCT+TGG | + | chr8_4:4088877-4088896 | Msa1307990:CDS | 35.0% | |
| !! | TGAAAAGTATCTTGGAATGC+CGG | + | chr8_4:4088923-4088942 | Msa1307990:CDS | 35.0% |
| CTAAACTCTACAAAGAAAGG+AGG | + | chr8_4:4089038-4089057 | Msa1307990:CDS | 35.0% | |
| TGGCTGGGTAACATAACATA+TGG | + | chr8_4:4087316-4087335 | Msa1307990:exon | 40.0% | |
| TGGTTTAAGGAGTGAAATGG+AGG | + | chr8_4:4087577-4087596 | Msa1307990:intron | 40.0% | |
| GTTGGCCATTCACTACAAAT+TGG | - | chr8_4:4087637-4087656 | None:intergenic | 40.0% | |
| GGCCAACCTTTCTATGTAAA+TGG | + | chr8_4:4087650-4087669 | Msa1307990:CDS | 40.0% | |
| !! | TTGGTTGATGGTATTTGCTG+CGG | + | chr8_4:4087685-4087704 | Msa1307990:CDS | 40.0% |
| ! | CAGTTGGTATGACAGTTTGT+AGG | + | chr8_4:4087756-4087775 | Msa1307990:intron | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | + | chr8_4:4087762-4087781 | Msa1307990:intron | 40.0% | |
| TTCACTCACCACAAAATCCA+GGG | - | chr8_4:4087858-4087877 | None:intergenic | 40.0% | |
| ! | GTTAACAATTGGGAGGCATA+TGG | + | chr8_4:4087914-4087933 | Msa1307990:CDS | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | + | chr8_4:4087940-4087959 | Msa1307990:CDS | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | + | chr8_4:4087941-4087960 | Msa1307990:CDS | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | - | chr8_4:4087979-4087998 | None:intergenic | 40.0% | |
| TTCTCACATCCAACTCTAAG+AGG | + | chr8_4:4088004-4088023 | Msa1307990:CDS | 40.0% | |
| TTGTAGTAGCCTCTTAGAGT+TGG | - | chr8_4:4088016-4088035 | None:intergenic | 40.0% | |
| ! | AACTCTAAGAGGCTACTACA+AGG | + | chr8_4:4088015-4088034 | Msa1307990:CDS | 40.0% |
| AGCTCCCAAGCAAAAATTGT+TGG | - | chr8_4:4088207-4088226 | None:intergenic | 40.0% | |
| !! | TGAAATCTCTGAGGTGTTGA+GGG | - | chr8_4:4088609-4088628 | None:intergenic | 40.0% |
| CCCAAATTCATATGCTCAAC+AGG | + | chr8_4:4088635-4088654 | Msa1307990:CDS | 40.0% | |
| ATTCAGGCTTACCTTGTTGA+AGG | + | chr8_4:4088829-4088848 | Msa1307990:intron | 40.0% | |
| CCATCCAAGACTTCACAAAT+GGG | - | chr8_4:4088884-4088903 | None:intergenic | 40.0% | |
| TCCATCCAAGACTTCACAAA+TGG | - | chr8_4:4088885-4088904 | None:intergenic | 40.0% | |
| TTTGTGAAGTCTTGGATGGA+AGG | + | chr8_4:4088885-4088904 | Msa1307990:CDS | 40.0% | |
| ! | ACTTTTCAGCATCCTCTATG+TGG | - | chr8_4:4088911-4088930 | None:intergenic | 40.0% |
| !! | GAGGATGCTGAAAAGTATCT+TGG | + | chr8_4:4088915-4088934 | Msa1307990:CDS | 40.0% |
| CCAAACTCACCAAAAACAAC+CGG | - | chr8_4:4088945-4088964 | None:intergenic | 40.0% | |
| TCTACAAAGAAAGGAGGTAG+TGG | + | chr8_4:4089044-4089063 | Msa1307990:CDS | 40.0% | |
| CTACAAAGAAAGGAGGTAGT+GGG | + | chr8_4:4089045-4089064 | Msa1307990:CDS | 40.0% | |
| TACAAAGAAAGGAGGTAGTG+GGG | + | chr8_4:4089046-4089065 | Msa1307990:CDS | 40.0% | |
| TCCTGATGGAACAGATTACA+TGG | + | chr8_4:4089094-4089113 | Msa1307990:intron | 40.0% | |
| TCCATGTAATCTGTTCCATC+AGG | - | chr8_4:4089098-4089117 | None:intergenic | 40.0% | |
| TGATATCCCTTCAATCCACA+AGG | + | chr8_4:4089165-4089184 | Msa1307990:CDS | 40.0% | |
| TGGCTGGGTAACATAACATA+TGG | + | chr8_4:4087316-4087335 | Msa1307990:exon | 40.0% | |
| TGGTTTAAGGAGTGAAATGG+AGG | + | chr8_4:4087577-4087596 | Msa1307990:intron | 40.0% | |
| GTTGGCCATTCACTACAAAT+TGG | - | chr8_4:4087637-4087656 | None:intergenic | 40.0% | |
| GGCCAACCTTTCTATGTAAA+TGG | + | chr8_4:4087650-4087669 | Msa1307990:CDS | 40.0% | |
| !! | TTGGTTGATGGTATTTGCTG+CGG | + | chr8_4:4087685-4087704 | Msa1307990:CDS | 40.0% |
| ! | CAGTTGGTATGACAGTTTGT+AGG | + | chr8_4:4087756-4087775 | Msa1307990:intron | 40.0% |
| GTATGACAGTTTGTAGGACT+TGG | + | chr8_4:4087762-4087781 | Msa1307990:intron | 40.0% | |
| TTCACTCACCACAAAATCCA+GGG | - | chr8_4:4087858-4087877 | None:intergenic | 40.0% | |
| ! | GTTAACAATTGGGAGGCATA+TGG | + | chr8_4:4087914-4087933 | Msa1307990:CDS | 40.0% |
| CAAAGCACAGTATGTCAAGT+GGG | + | chr8_4:4087940-4087959 | Msa1307990:CDS | 40.0% | |
| AAAGCACAGTATGTCAAGTG+GGG | + | chr8_4:4087941-4087960 | Msa1307990:CDS | 40.0% | |
| CATCATCAGAGGTCAAGTTA+AGG | - | chr8_4:4087979-4087998 | None:intergenic | 40.0% | |
| TTCTCACATCCAACTCTAAG+AGG | + | chr8_4:4088004-4088023 | Msa1307990:CDS | 40.0% | |
| TTGTAGTAGCCTCTTAGAGT+TGG | - | chr8_4:4088016-4088035 | None:intergenic | 40.0% | |
| ! | AACTCTAAGAGGCTACTACA+AGG | + | chr8_4:4088015-4088034 | Msa1307990:CDS | 40.0% |
| AGCTCCCAAGCAAAAATTGT+TGG | - | chr8_4:4088207-4088226 | None:intergenic | 40.0% | |
| !! | TGAAATCTCTGAGGTGTTGA+GGG | - | chr8_4:4088609-4088628 | None:intergenic | 40.0% |
| CCCAAATTCATATGCTCAAC+AGG | + | chr8_4:4088635-4088654 | Msa1307990:CDS | 40.0% | |
| ATTCAGGCTTACCTTGTTGA+AGG | + | chr8_4:4088829-4088848 | Msa1307990:intron | 40.0% | |
| CCATCCAAGACTTCACAAAT+GGG | - | chr8_4:4088884-4088903 | None:intergenic | 40.0% | |
| TCCATCCAAGACTTCACAAA+TGG | - | chr8_4:4088885-4088904 | None:intergenic | 40.0% | |
| TTTGTGAAGTCTTGGATGGA+AGG | + | chr8_4:4088885-4088904 | Msa1307990:CDS | 40.0% | |
| ! | ACTTTTCAGCATCCTCTATG+TGG | - | chr8_4:4088911-4088930 | None:intergenic | 40.0% |
| !! | GAGGATGCTGAAAAGTATCT+TGG | + | chr8_4:4088915-4088934 | Msa1307990:CDS | 40.0% |
| CCAAACTCACCAAAAACAAC+CGG | - | chr8_4:4088945-4088964 | None:intergenic | 40.0% | |
| TCTACAAAGAAAGGAGGTAG+TGG | + | chr8_4:4089044-4089063 | Msa1307990:CDS | 40.0% | |
| CTACAAAGAAAGGAGGTAGT+GGG | + | chr8_4:4089045-4089064 | Msa1307990:CDS | 40.0% | |
| TACAAAGAAAGGAGGTAGTG+GGG | + | chr8_4:4089046-4089065 | Msa1307990:CDS | 40.0% | |
| TCCTGATGGAACAGATTACA+TGG | + | chr8_4:4089094-4089113 | Msa1307990:intron | 40.0% | |
| TCCATGTAATCTGTTCCATC+AGG | - | chr8_4:4089098-4089117 | None:intergenic | 40.0% | |
| TGATATCCCTTCAATCCACA+AGG | + | chr8_4:4089165-4089184 | Msa1307990:CDS | 40.0% | |
| ATCAAACGCAGTTGAGCTGA+AGG | - | chr8_4:4087411-4087430 | None:intergenic | 45.0% | |
| GTGAAATGGAGGAAGCTGAA+TGG | + | chr8_4:4087588-4087607 | Msa1307990:CDS | 45.0% | |
| TGGCAGATGGTGCAAAAGAA+AGG | + | chr8_4:4087608-4087627 | Msa1307990:CDS | 45.0% | |
| TCTCCATTGGCCATCATTGA+AGG | - | chr8_4:4087789-4087808 | None:intergenic | 45.0% | |
| ! | ATTTCTGAAGGGCTCTCCAT+TGG | - | chr8_4:4087802-4087821 | None:intergenic | 45.0% |
| TGAAGTAGTATTCAAGGCCC+TGG | + | chr8_4:4087838-4087857 | Msa1307990:intron | 45.0% | |
| ! | ATTCAAGGCCCTGGATTTTG+TGG | + | chr8_4:4087847-4087866 | Msa1307990:intron | 45.0% |
| CTTCACTCACCACAAAATCC+AGG | - | chr8_4:4087859-4087878 | None:intergenic | 45.0% | |
| ! | AACAATTGGGAGGCATATGG+TGG | + | chr8_4:4087917-4087936 | Msa1307990:CDS | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | + | chr8_4:4087939-4087958 | Msa1307990:CDS | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | + | chr8_4:4088027-4088046 | Msa1307990:CDS | 45.0% | |
| TACCTGTAACGTATCACCAG+AGG | - | chr8_4:4088259-4088278 | None:intergenic | 45.0% | |
| CCAATCTCCAGTAGGTGTTT+CGG | - | chr8_4:4088567-4088586 | None:intergenic | 45.0% | |
| AGGGGCCATAAAATCCTTCT+AGG | - | chr8_4:4088590-4088609 | None:intergenic | 45.0% | |
| !! | GAAATCTCTGAGGTGTTGAG+GGG | - | chr8_4:4088608-4088627 | None:intergenic | 45.0% |
| !! | CTGAAATCTCTGAGGTGTTG+AGG | - | chr8_4:4088610-4088629 | None:intergenic | 45.0% |
| GGGTTGAACTGAAATCTCTG+AGG | - | chr8_4:4088618-4088637 | None:intergenic | 45.0% | |
| ATCAGAAACCACCAGGTTCT+AGG | + | chr8_4:4088672-4088691 | Msa1307990:CDS | 45.0% | |
| AAGGAACCTTACCAAGAGTC+TGG | - | chr8_4:4088726-4088745 | None:intergenic | 45.0% | |
| CCCATTTGTGAAGTCTTGGA+TGG | + | chr8_4:4088881-4088900 | Msa1307990:CDS | 45.0% | |
| !! | CTTGGAATGCCGGTTGTTTT+TGG | + | chr8_4:4088933-4088952 | Msa1307990:CDS | 45.0% |
| !!! | CCGGTTGTTTTTGGTGAGTT+TGG | + | chr8_4:4088942-4088961 | Msa1307990:CDS | 45.0% |
| GGTGTATCTGCAAAAGATCC+TGG | + | chr8_4:4088963-4088982 | Msa1307990:CDS | 45.0% | |
| CAGGAAAGAACTGCCACAAA+AGG | - | chr8_4:4089079-4089098 | None:intergenic | 45.0% | |
| TTGTGGCAGTTCTTTCCTGA+TGG | + | chr8_4:4089080-4089099 | Msa1307990:intron | 45.0% | |
| GGAACAGATTACATGGACGA+TGG | + | chr8_4:4089101-4089120 | Msa1307990:intron | 45.0% | |
| AGAGCAGAGGGAGTTGAATA+GGG | - | chr8_4:4089195-4089214 | None:intergenic | 45.0% | |
| ATCAAACGCAGTTGAGCTGA+AGG | - | chr8_4:4087411-4087430 | None:intergenic | 45.0% | |
| GTGAAATGGAGGAAGCTGAA+TGG | + | chr8_4:4087588-4087607 | Msa1307990:CDS | 45.0% | |
| TGGCAGATGGTGCAAAAGAA+AGG | + | chr8_4:4087608-4087627 | Msa1307990:CDS | 45.0% | |
| TCTCCATTGGCCATCATTGA+AGG | - | chr8_4:4087789-4087808 | None:intergenic | 45.0% | |
| ! | ATTTCTGAAGGGCTCTCCAT+TGG | - | chr8_4:4087802-4087821 | None:intergenic | 45.0% |
| TGAAGTAGTATTCAAGGCCC+TGG | + | chr8_4:4087838-4087857 | Msa1307990:intron | 45.0% | |
| ! | ATTCAAGGCCCTGGATTTTG+TGG | + | chr8_4:4087847-4087866 | Msa1307990:intron | 45.0% |
| CTTCACTCACCACAAAATCC+AGG | - | chr8_4:4087859-4087878 | None:intergenic | 45.0% | |
| ! | AACAATTGGGAGGCATATGG+TGG | + | chr8_4:4087917-4087936 | Msa1307990:CDS | 45.0% |
| GCAAAGCACAGTATGTCAAG+TGG | + | chr8_4:4087939-4087958 | Msa1307990:CDS | 45.0% | |
| CTACTACAAGGACCATGTCA+AGG | + | chr8_4:4088027-4088046 | Msa1307990:CDS | 45.0% | |
| TACCTGTAACGTATCACCAG+AGG | - | chr8_4:4088259-4088278 | None:intergenic | 45.0% | |
| CCAATCTCCAGTAGGTGTTT+CGG | - | chr8_4:4088567-4088586 | None:intergenic | 45.0% | |
| AGGGGCCATAAAATCCTTCT+AGG | - | chr8_4:4088590-4088609 | None:intergenic | 45.0% | |
| !! | GAAATCTCTGAGGTGTTGAG+GGG | - | chr8_4:4088608-4088627 | None:intergenic | 45.0% |
| !! | CTGAAATCTCTGAGGTGTTG+AGG | - | chr8_4:4088610-4088629 | None:intergenic | 45.0% |
| GGGTTGAACTGAAATCTCTG+AGG | - | chr8_4:4088618-4088637 | None:intergenic | 45.0% | |
| ATCAGAAACCACCAGGTTCT+AGG | + | chr8_4:4088672-4088691 | Msa1307990:CDS | 45.0% | |
| AAGGAACCTTACCAAGAGTC+TGG | - | chr8_4:4088726-4088745 | None:intergenic | 45.0% | |
| CCCATTTGTGAAGTCTTGGA+TGG | + | chr8_4:4088881-4088900 | Msa1307990:CDS | 45.0% | |
| !! | CTTGGAATGCCGGTTGTTTT+TGG | + | chr8_4:4088933-4088952 | Msa1307990:CDS | 45.0% |
| !!! | CCGGTTGTTTTTGGTGAGTT+TGG | + | chr8_4:4088942-4088961 | Msa1307990:CDS | 45.0% |
| GGTGTATCTGCAAAAGATCC+TGG | + | chr8_4:4088963-4088982 | Msa1307990:CDS | 45.0% | |
| CAGGAAAGAACTGCCACAAA+AGG | - | chr8_4:4089079-4089098 | None:intergenic | 45.0% | |
| TTGTGGCAGTTCTTTCCTGA+TGG | + | chr8_4:4089080-4089099 | Msa1307990:intron | 45.0% | |
| GGAACAGATTACATGGACGA+TGG | + | chr8_4:4089101-4089120 | Msa1307990:intron | 45.0% | |
| AGAGCAGAGGGAGTTGAATA+GGG | - | chr8_4:4089195-4089214 | None:intergenic | 45.0% | |
| GGATGAGTCGACAAGAGGAA+GGG | + | chr8_4:4087706-4087725 | Msa1307990:CDS | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | + | chr8_4:4087776-4087795 | Msa1307990:CDS | 50.0% | |
| CTCCTCTGGTGATACGTTAC+AGG | + | chr8_4:4088254-4088273 | Msa1307990:CDS | 50.0% | |
| CGTTGATCCGAAACACCTAC+TGG | + | chr8_4:4088557-4088576 | Msa1307990:CDS | 50.0% | |
| CCGAAACACCTACTGGAGAT+TGG | + | chr8_4:4088564-4088583 | Msa1307990:CDS | 50.0% | |
| CTTCTAGGCCAATCTCCAGT+AGG | - | chr8_4:4088575-4088594 | None:intergenic | 50.0% | |
| !! | CTACTGGAGATTGGCCTAGA+AGG | + | chr8_4:4088573-4088592 | Msa1307990:CDS | 50.0% |
| CAAAGTCGACACCTAGAACC+TGG | - | chr8_4:4088686-4088705 | None:intergenic | 50.0% | |
| TTGGATGGAAGGCCACATAG+AGG | + | chr8_4:4088896-4088915 | Msa1307990:CDS | 50.0% | |
| ! | GGCAAGCCTTGTGGATTGAA+GGG | - | chr8_4:4089174-4089193 | None:intergenic | 50.0% |
| GTTGAATAGGGCAAGCCTTG+TGG | - | chr8_4:4089183-4089202 | None:intergenic | 50.0% | |
| CAGAGCAGAGGGAGTTGAAT+AGG | - | chr8_4:4089196-4089215 | None:intergenic | 50.0% | |
| GGATGAGTCGACAAGAGGAA+GGG | + | chr8_4:4087706-4087725 | Msa1307990:CDS | 50.0% | |
| AGGACTTGGGCCTTCAATGA+TGG | + | chr8_4:4087776-4087795 | Msa1307990:CDS | 50.0% | |
| CTCCTCTGGTGATACGTTAC+AGG | + | chr8_4:4088254-4088273 | Msa1307990:CDS | 50.0% | |
| CGTTGATCCGAAACACCTAC+TGG | + | chr8_4:4088557-4088576 | Msa1307990:CDS | 50.0% | |
| CCGAAACACCTACTGGAGAT+TGG | + | chr8_4:4088564-4088583 | Msa1307990:CDS | 50.0% | |
| CTTCTAGGCCAATCTCCAGT+AGG | - | chr8_4:4088575-4088594 | None:intergenic | 50.0% | |
| !! | CTACTGGAGATTGGCCTAGA+AGG | + | chr8_4:4088573-4088592 | Msa1307990:CDS | 50.0% |
| CAAAGTCGACACCTAGAACC+TGG | - | chr8_4:4088686-4088705 | None:intergenic | 50.0% | |
| TTGGATGGAAGGCCACATAG+AGG | + | chr8_4:4088896-4088915 | Msa1307990:CDS | 50.0% | |
| ! | GGCAAGCCTTGTGGATTGAA+GGG | - | chr8_4:4089174-4089193 | None:intergenic | 50.0% |
| GTTGAATAGGGCAAGCCTTG+TGG | - | chr8_4:4089183-4089202 | None:intergenic | 50.0% | |
| CAGAGCAGAGGGAGTTGAAT+AGG | - | chr8_4:4089196-4089215 | None:intergenic | 50.0% | |
| GGAGGAAGCTGAATGGCAGA+TGG | + | chr8_4:4087595-4087614 | Msa1307990:CDS | 55.0% | |
| CGGATGAGTCGACAAGAGGA+AGG | + | chr8_4:4087705-4087724 | Msa1307990:CDS | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | + | chr8_4:4087715-4087734 | Msa1307990:CDS | 55.0% | |
| GGGCCTTCAATGATGGCCAA+TGG | + | chr8_4:4087783-4087802 | Msa1307990:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | - | chr8_4:4088250-4088269 | None:intergenic | 55.0% | |
| AGTCGACACCTAGAACCTGG+TGG | - | chr8_4:4088683-4088702 | None:intergenic | 55.0% | |
| !! | AAGAAAGGAGGTAGTGGGGC+TGG | + | chr8_4:4089050-4089069 | Msa1307990:CDS | 55.0% |
| ! | GGGCAAGCCTTGTGGATTGA+AGG | - | chr8_4:4089175-4089194 | None:intergenic | 55.0% |
| GGAGGAAGCTGAATGGCAGA+TGG | + | chr8_4:4087595-4087614 | Msa1307990:CDS | 55.0% | |
| CGGATGAGTCGACAAGAGGA+AGG | + | chr8_4:4087705-4087724 | Msa1307990:CDS | 55.0% | |
| GACAAGAGGAAGGGTCACTC+AGG | + | chr8_4:4087715-4087734 | Msa1307990:CDS | 55.0% | |
| GGGCCTTCAATGATGGCCAA+TGG | + | chr8_4:4087783-4087802 | Msa1307990:CDS | 55.0% | |
| CGTATCACCAGAGGAGTCAG+AGG | - | chr8_4:4088250-4088269 | None:intergenic | 55.0% | |
| AGTCGACACCTAGAACCTGG+TGG | - | chr8_4:4088683-4088702 | None:intergenic | 55.0% | |
| !! | AAGAAAGGAGGTAGTGGGGC+TGG | + | chr8_4:4089050-4089069 | Msa1307990:CDS | 55.0% |
| ! | GGGCAAGCCTTGTGGATTGA+AGG | - | chr8_4:4089175-4089194 | None:intergenic | 55.0% |
| GCTGCGGATGAGTCGACAAG+AGG | + | chr8_4:4087701-4087720 | Msa1307990:CDS | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | + | chr8_4:4087953-4087972 | Msa1307990:CDS | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | - | chr8_4:4088240-4088259 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | + | chr8_4:4088240-4088259 | Msa1307990:CDS | 60.0% | |
| ! | GTGGGGCTGGAAGCCTTTTG+TGG | + | chr8_4:4089063-4089082 | Msa1307990:CDS | 60.0% |
| GCTGCGGATGAGTCGACAAG+AGG | + | chr8_4:4087701-4087720 | Msa1307990:CDS | 60.0% | |
| GTCAAGTGGGGCAATGCTGC+TGG | + | chr8_4:4087953-4087972 | Msa1307990:CDS | 60.0% | |
| ! | GAGGAGTCAGAGGTGCATCG+AGG | - | chr8_4:4088240-4088259 | None:intergenic | 60.0% |
| CGATGCACCTCTGACTCCTC+TGG | + | chr8_4:4088240-4088259 | Msa1307990:CDS | 60.0% | |
| ! | GTGGGGCTGGAAGCCTTTTG+TGG | + | chr8_4:4089063-4089082 | Msa1307990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 4087304 | 4089216 | 4087304 | ID=Msa1307990;Name=Msa1307990 |
| chr8_4 | mRNA | 4087304 | 4089216 | 4087304 | ID=Msa1307990-mRNA-1;Parent=Msa1307990;Name=Msa1307990-mRNA-1;_AED=0.18;_eAED=0.18;_QI=31|0.57|0.37|1|0.57|0.5|8|0|427 |
| chr8_4 | exon | 4087304 | 4087492 | 4087304 | ID=Msa1307990-mRNA-1:exon:1189;Parent=Msa1307990-mRNA-1 |
| chr8_4 | exon | 4087586 | 4087761 | 4087586 | ID=Msa1307990-mRNA-1:exon:1190;Parent=Msa1307990-mRNA-1 |
| chr8_4 | exon | 4087771 | 4087844 | 4087771 | ID=Msa1307990-mRNA-1:exon:1191;Parent=Msa1307990-mRNA-1 |
| chr8_4 | exon | 4087854 | 4088048 | 4087854 | ID=Msa1307990-mRNA-1:exon:1192;Parent=Msa1307990-mRNA-1 |
| chr8_4 | exon | 4088153 | 4088275 | 4088153 | ID=Msa1307990-mRNA-1:exon:1193;Parent=Msa1307990-mRNA-1 |
| chr8_4 | exon | 4088522 | 4088733 | 4088522 | ID=Msa1307990-mRNA-1:exon:1194;Parent=Msa1307990-mRNA-1 |
| chr8_4 | exon | 4088851 | 4089087 | 4088851 | ID=Msa1307990-mRNA-1:exon:1195;Parent=Msa1307990-mRNA-1 |
| chr8_4 | exon | 4089108 | 4089216 | 4089108 | ID=Msa1307990-mRNA-1:exon:1196;Parent=Msa1307990-mRNA-1 |
| chr8_4 | five_prime_UTR | 4087304 | 4087334 | 4087304 | ID=Msa1307990-mRNA-1:five_prime_utr;Parent=Msa1307990-mRNA-1 |
| chr8_4 | CDS | 4087335 | 4087492 | 4087335 | ID=Msa1307990-mRNA-1:cds;Parent=Msa1307990-mRNA-1 |
| chr8_4 | CDS | 4087586 | 4087761 | 4087586 | ID=Msa1307990-mRNA-1:cds;Parent=Msa1307990-mRNA-1 |
| chr8_4 | CDS | 4087771 | 4087844 | 4087771 | ID=Msa1307990-mRNA-1:cds;Parent=Msa1307990-mRNA-1 |
| chr8_4 | CDS | 4087854 | 4088048 | 4087854 | ID=Msa1307990-mRNA-1:cds;Parent=Msa1307990-mRNA-1 |
| chr8_4 | CDS | 4088153 | 4088275 | 4088153 | ID=Msa1307990-mRNA-1:cds;Parent=Msa1307990-mRNA-1 |
| chr8_4 | CDS | 4088522 | 4088733 | 4088522 | ID=Msa1307990-mRNA-1:cds;Parent=Msa1307990-mRNA-1 |
| chr8_4 | CDS | 4088851 | 4089087 | 4088851 | ID=Msa1307990-mRNA-1:cds;Parent=Msa1307990-mRNA-1 |
| chr8_4 | CDS | 4089108 | 4089216 | 4089108 | ID=Msa1307990-mRNA-1:cds;Parent=Msa1307990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
