AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1227760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1227760 MtrunA17_Chr8g0334501 97.619 462 10 1 1 462 1 461 0.0 943
Msa1227760 MtrunA17_Chr7g0245051 80.047 426 81 1 40 461 32 457 0.0 739
Msa1227760 MtrunA17_Chr7g0245101 76.818 440 97 2 27 461 19 458 0.0 726
Msa1227760 MtrunA17_Chr4g0020521 51.187 379 182 1 64 442 35 410 3.22e-148 428
Msa1227760 MtrunA17_Chr5g0404601 51.938 387 183 2 56 441 24 408 7.33e-145 421
Msa1227760 MtrunA17_Chr1g0193531 52.703 370 172 2 64 433 30 396 3.58e-143 415
Msa1227760 MtrunA17_Chr1g0193611 51.081 370 179 1 64 433 33 400 5.55e-141 410
Msa1227760 MtrunA17_Chr7g0271511 49.618 393 185 3 41 433 47 426 1.60e-140 409
Msa1227760 MtrunA17_Chr3g0141751 49.602 377 182 3 58 432 21 391 1.67e-139 406
Msa1227760 MtrunA17_Chr1g0193551 52.162 370 173 3 64 433 36 401 1.89e-139 406
Msa1227760 MtrunA17_Chr1g0193601 51.081 370 179 1 64 433 33 400 4.01e-138 402
Msa1227760 MtrunA17_Chr4g0040121 47.959 392 199 3 50 436 23 414 4.41e-136 398
Msa1227760 MtrunA17_Chr2g0324441 46.579 380 200 2 57 433 34 413 2.10e-130 384
Msa1227760 MtrunA17_Chr1g0193541 46.237 372 161 4 64 433 32 366 4.94e-114 341
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1227760 AT5G01930.1 67.615 457 129 4 7 461 8 447 0.0 654
Msa1227760 AT4G28320.1 47.848 395 196 2 58 442 36 430 4.10e-138 404
Msa1227760 AT2G20680.1 49.337 377 190 1 58 433 37 413 1.83e-135 397
Msa1227760 AT5G66460.1 49.471 378 188 1 64 441 32 406 4.45e-135 396
Msa1227760 AT3G10890.1 48.257 373 191 2 64 435 32 403 2.54e-133 391
Msa1227760 AT3G10900.1 48.930 374 188 3 64 435 30 402 1.24e-130 384
Msa1227760 AT1G02310.2 47.326 374 186 6 64 432 50 417 1.19e-121 362
Msa1227760 AT1G02310.1 47.326 374 186 6 64 432 30 397 1.26e-121 361
Msa1227760 AT3G30540.1 44.012 334 148 3 64 396 30 325 4.26e-95 290

Find 124 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGTTGAGCATATGAATT+TGG 0.114525 8_2:+3143365 None:intergenic
GACCAACCTTTCTATGTAAA+TGG 0.163607 8_2:-3144351 Msa1227760:CDS
CCAAATTCCATCTTAACTTA+TGG 0.180101 8_2:-3144531 Msa1227760:CDS
CCATAAGTTAAGATGGAATT+TGG 0.274969 8_2:+3144531 None:intergenic
TAAATGGATTCAACACTTAC+TGG 0.284522 8_2:-3144335 Msa1227760:CDS
GAAAGGAAATAACACATAAT+TGG 0.289737 8_2:+3144643 None:intergenic
CAGAGCAGAGGGAGTTGAAT+AGG 0.306615 8_2:+3142808 None:intergenic
CTCCTCTGGTGATACGTTAC+AGG 0.324607 8_2:-3143751 Msa1227760:intron
GTTGGTCATTCACTGCAAAT+TGG 0.331406 8_2:+3144367 None:intergenic
CAAATTCCATCTTAACTTAT+GGG 0.334308 8_2:-3144530 Msa1227760:intron
TATTATCATTGGTTAACAAT+TGG 0.335350 8_2:-3144098 Msa1227760:CDS
ATCAGAAACCACCAGGTTCT+AGG 0.336789 8_2:-3143329 Msa1227760:CDS
CCCAAATTCATATGCTCAAC+AGG 0.348303 8_2:-3143366 Msa1227760:CDS
ACTCACAAATATCACTTATA+AGG 0.349810 8_2:-3143829 Msa1227760:CDS
TTGAATCCATTTACATAGAA+AGG 0.367924 8_2:+3144345 None:intergenic
ATTATCATTGGTTAACAATT+GGG 0.370572 8_2:-3144097 Msa1227760:CDS
GTATGACAGTTTGTAGGACT+TGG 0.375713 8_2:-3144239 Msa1227760:CDS
AAGACTTCACAAATGGGATA+TGG 0.386757 8_2:+3143126 None:intergenic
ATTCAACACTTACTGGTTGA+TGG 0.393983 8_2:-3144328 Msa1227760:CDS
CTACTGGAGATTGGCCTAGA+AGG 0.395563 8_2:-3143428 Msa1227760:CDS
CTGGGGTTGTAAGAAGAAAA+AGG 0.407765 8_2:-3142775 Msa1227760:CDS
CAGTTGGTATGACAGTTTGT+AGG 0.408046 8_2:-3144245 Msa1227760:CDS
AGTTAAGTTGGAATAAATAA+AGG 0.409659 8_2:-3142719 Msa1227760:three_prime_UTR
TTGTGGCAGTTCTTTCCTGA+TGG 0.418500 8_2:-3142921 Msa1227760:CDS
GTCAAGTGGGGCAATGCTGC+TGG 0.420167 8_2:-3144048 Msa1227760:CDS
AATCAGACTCATATTATCAT+TGG 0.423314 8_2:-3144109 Msa1227760:CDS
TCTCCATTGGCCATCATTGA+AGG 0.427709 8_2:+3144215 None:intergenic
TCCATCCAAGACTTCACAAA+TGG 0.428524 8_2:+3143119 None:intergenic
CCAATCTCCAGTAGGTGTTT+CGG 0.433449 8_2:+3143437 None:intergenic
AGGGGCCATAAAATCCTTCT+AGG 0.439788 8_2:+3143414 None:intergenic
AAGGAACCTTACCAAGAGTC+TGG 0.441773 8_2:+3143278 None:intergenic
ATTTCTGAAGGGCTCTCCAT+TGG 0.442818 8_2:+3144202 None:intergenic
GAGGATGCTGAAAAGTATCT+TGG 0.444822 8_2:-3143086 Msa1227760:CDS
ATGACACTGAATATGAAGAT+TGG 0.449152 8_2:-3144572 Msa1227760:CDS
TTATGATGAAGTAGTATTCA+AGG 0.449801 8_2:-3144169 Msa1227760:CDS
AGAGCAGAGGGAGTTGAATA+GGG 0.450240 8_2:+3142809 None:intergenic
CTGCTCTGAGAGATGCCACT+GGG 0.450365 8_2:-3142793 Msa1227760:CDS
GTTAACAATTGGGAGGCATA+TGG 0.457775 8_2:-3144087 Msa1227760:CDS
CCTGTTGAGCATATGAATTT+GGG 0.458492 8_2:+3143366 None:intergenic
CCGAAACACCTACTGGAGAT+TGG 0.462360 8_2:-3143437 Msa1227760:CDS
TGAAATCTCTGAGGTGTTGA+GGG 0.462829 8_2:+3143395 None:intergenic
ATATCCCATTTGTGAAGTCT+TGG 0.463092 8_2:-3143124 Msa1227760:CDS
GATATCATGCTTGAAATAGA+AGG 0.473952 8_2:+3142852 None:intergenic
AGGATGAGGAGTAGTTAAGT+TGG 0.477048 8_2:-3142731 Msa1227760:exon
GGGCAAGCCTTGTGGATTGA+AGG 0.483170 8_2:+3142829 None:intergenic
AGGACTTGGGCCTTCAATGA+TGG 0.484180 8_2:-3144225 Msa1227760:CDS
ATCCATTTACATAGAAAGGT+TGG 0.484246 8_2:+3144349 None:intergenic
TCTGCTCTGAGAGATGCCAC+TGG 0.484589 8_2:-3142794 Msa1227760:CDS
ATTCTAAACTCTACAAAGAA+AGG 0.486329 8_2:-3142966 Msa1227760:CDS
ACATGCATACACACTCTGGC+TGG 0.489169 8_2:-3144701 None:intergenic
TCCATGTAATCTGTTCCATC+AGG 0.489401 8_2:+3142906 None:intergenic
CGTTGATCCGAAACACCTAC+TGG 0.492407 8_2:-3143444 Msa1227760:CDS
CGATGCACCTCTGACTCCTC+TGG 0.493066 8_2:-3143765 Msa1227760:CDS
AAGAAAGGAGGTAGTGGGGC+TGG 0.494489 8_2:-3142951 Msa1227760:CDS
GGTGTATCTGCAAAAGATCC+TGG 0.494622 8_2:-3143038 Msa1227760:CDS
CTCATATATATCCAGACTCT+TGG 0.494942 8_2:-3143289 Msa1227760:intron
TACGTACCCATAAGTTAAGA+TGG 0.495593 8_2:+3144524 None:intergenic
TGGCTGGGTAACATAACATA+TGG 0.496590 8_2:-3144685 Msa1227760:exon
CTTCACTCACCACAAAATCC+AGG 0.501627 8_2:+3144145 None:intergenic
CAGGAAAGAACTGCCACAAA+AGG 0.501942 8_2:+3142925 None:intergenic
CTATATGTTGAATTATAACC+AGG 0.502559 8_2:+3143020 None:intergenic
TATGACAGTTTGTAGGACTT+GGG 0.504511 8_2:-3144238 Msa1227760:CDS
TGGCAGATGGTGCAAAAGAA+AGG 0.506336 8_2:-3144393 Msa1227760:CDS
TGAAGTAGTATTCAAGGCCC+TGG 0.508682 8_2:-3144163 Msa1227760:CDS
CCCATTTGTGAAGTCTTGGA+TGG 0.515184 8_2:-3143120 Msa1227760:CDS
TTCAAACATGCATTCTCAGT+TGG 0.518806 8_2:-3144261 Msa1227760:CDS
TTGTAGTAGCCTCTGAGAGT+TGG 0.519117 8_2:+3143988 None:intergenic
TGACACTGAATATGAAGATT+GGG 0.520692 8_2:-3144571 Msa1227760:CDS
ATCAAATGCAGTTGAGCTGA+AGG 0.526679 8_2:+3144593 None:intergenic
TCCTGATGGAACAGATTACA+TGG 0.528541 8_2:-3142907 Msa1227760:CDS
CTGAAATCTCTGAGGTGTTG+AGG 0.529947 8_2:+3143394 None:intergenic
CCATCCAAGACTTCACAAAT+GGG 0.530333 8_2:+3143120 None:intergenic
GCAAAGCACAGTATGTCAAG+TGG 0.532392 8_2:-3144062 Msa1227760:CDS
TCTACAAAGAAAGGAGGTAG+TGG 0.533604 8_2:-3142957 Msa1227760:CDS
CATCATCAGAGGTCAAGTTA+AGG 0.540046 8_2:+3144025 None:intergenic
CTACAAAGAAAGGAGGTAGT+GGG 0.553421 8_2:-3142956 Msa1227760:CDS
CATGCATACACACTCTGGCT+GGG 0.554834 8_2:-3144700 Msa1227760:five_prime_UTR
AAAGTGATGGTGATTTCTGA+AGG 0.556976 8_2:+3144190 None:intergenic
CGGACGAGTCGACAAGAGGA+AGG 0.559006 8_2:-3144296 Msa1227760:CDS
GGCAAGCCTTGTGGATTGAA+GGG 0.560023 8_2:+3142830 None:intergenic
CAAAGTCGACACCTAGAACC+TGG 0.561106 8_2:+3143318 None:intergenic
AATTCATATGCTCAACAGGT+TGG 0.561704 8_2:-3143362 Msa1227760:CDS
CAAAGCACAGTATGTCAAGT+GGG 0.561874 8_2:-3144061 Msa1227760:CDS
TTAGGAATGGATAAAAGAGA+TGG 0.562372 8_2:-3143483 Msa1227760:intron
TTCTTCGTTTATAAAAGAAG+TGG 0.564709 8_2:+3142577 None:intergenic
GTGAAATGGAGGAAGCTGAA+TGG 0.564983 8_2:-3144413 Msa1227760:CDS
AAATGTAGTCTACGAGGATG+AGG 0.567019 8_2:-3142745 Msa1227760:CDS
GTGGCATCTCTCAGAGCAGA+GGG 0.567107 8_2:+3142797 None:intergenic
CAATACATGCATACACACTC+TGG 0.570822 8_2:-3144705 None:intergenic
TCTTCGTTTATAAAAGAAGT+GGG 0.571401 8_2:+3142578 None:intergenic
TGGTTTAAGGAGTGAAATGG+AGG 0.578038 8_2:-3144424 Msa1227760:intron
ATCATTGGTTAACAATTGGG+AGG 0.578607 8_2:-3144094 Msa1227760:CDS
AACTCTCAGAGGCTACTACA+AGG 0.578621 8_2:-3143986 Msa1227760:CDS
GTTGAATAGGGCAAGCCTTG+TGG 0.579100 8_2:+3142821 None:intergenic
GACAAGAGGAAGGGTCACTC+AGG 0.585832 8_2:-3144286 Msa1227760:CDS
GCTGCGGACGAGTCGACAAG+AGG 0.586696 8_2:-3144300 Msa1227760:CDS
CTTCTAGGCCAATCTCCAGT+AGG 0.593952 8_2:+3143429 None:intergenic
GGGCCTTCAATGATGGCCAA+TGG 0.595028 8_2:-3144218 Msa1227760:CDS
CGTATCACCAGAGGAGTCAG+AGG 0.597961 8_2:+3143758 None:intergenic
TTCTCACATCCAACTCTCAG+AGG 0.605503 8_2:-3143997 Msa1227760:CDS
CTGGTTGATGGTATTTGCTG+CGG 0.606752 8_2:-3144316 Msa1227760:CDS
GGAACAGATTACATGGATGA+TGG 0.606894 8_2:-3142900 Msa1227760:CDS
CTAAACTCTACAAAGAAAGG+AGG 0.610072 8_2:-3142963 Msa1227760:CDS
ACTACTTCATCATAAAGTGA+TGG 0.615191 8_2:+3144177 None:intergenic
TGAAAAGTATCTTGGAATGC+CGG 0.623758 8_2:-3143078 Msa1227760:CDS
AACAATTGGGAGGCATATGG+TGG 0.626650 8_2:-3144084 Msa1227760:CDS
TTGGATGGAAGCCCACATAG+AGG 0.626696 8_2:-3143105 Msa1227760:CDS
TTCACTCACCACAAAATCCA+GGG 0.626794 8_2:+3144146 None:intergenic
AGTGGCATCTCTCAGAGCAG+AGG 0.630497 8_2:+3142796 None:intergenic
GGACGAGTCGACAAGAGGAA+GGG 0.630959 8_2:-3144295 Msa1227760:CDS
GAAATCTCTGAGGTGTTGAG+GGG 0.645814 8_2:+3143396 None:intergenic
AAGTGATGGTGATTTCTGAA+GGG 0.650216 8_2:+3144191 None:intergenic
TGCTCTGAGAGATGCCACTG+GGG 0.651417 8_2:-3142792 Msa1227760:CDS
TACAAAGAAAGGAGGTAGTG+GGG 0.655170 8_2:-3142955 Msa1227760:CDS
CTACTACAAGGACCATGTCA+AGG 0.659291 8_2:-3143974 Msa1227760:intron
GGAGGAAGCTGAATGGCAGA+TGG 0.662800 8_2:-3144406 Msa1227760:CDS
GCTAGGAACTTACCTTGACA+TGG 0.669271 8_2:+3143962 None:intergenic
TGATATCCCTTCAATCCACA+AGG 0.672007 8_2:-3142836 Msa1227760:CDS
AAAGCACAGTATGTCAAGTG+GGG 0.694927 8_2:-3144060 Msa1227760:CDS
TACCTGTAACGTATCACCAG+AGG 0.699288 8_2:+3143749 None:intergenic
GGGTTGAACTGAAATCTCTG+AGG 0.711750 8_2:+3143386 None:intergenic
GAGGAGTCAGAGGTGCATCG+AGG 0.724283 8_2:+3143768 None:intergenic
GTTGCAAAATGTAGTCTACG+AGG 0.776748 8_2:-3142751 Msa1227760:CDS
AGTCGACACCTAGAACCTGG+TGG 0.780190 8_2:+3143321 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAATATATATGGTTTT+TGG - chr8_2:3142652-3142671 Msa1227760:three_prime_UTR 10.0%
!!! AATTAGTTTAAAAGAAAAAT+AGG + chr8_2:3143187-3143206 None:intergenic 10.0%
!!! ATTTTTCTTTTAAACTAATT+TGG - chr8_2:3143187-3143206 Msa1227760:intron 10.0%
!!! GGAAATTTTTATTAATAAAT+TGG + chr8_2:3143470-3143489 None:intergenic 10.0%
!!! AATAATTAATGTTTTTTCTA+CGG - chr8_2:3144633-3144652 Msa1227760:CDS 10.0%
!!! AATTAAATATATATGGTTTT+TGG - chr8_2:3142652-3142671 Msa1227760:three_prime_UTR 10.0%
!!! AATTAGTTTAAAAGAAAAAT+AGG + chr8_2:3143187-3143206 None:intergenic 10.0%
!!! ATTTTTCTTTTAAACTAATT+TGG - chr8_2:3143187-3143206 Msa1227760:intron 10.0%
!!! GGAAATTTTTATTAATAAAT+TGG + chr8_2:3143470-3143489 None:intergenic 10.0%
!!! AATAATTAATGTTTTTTCTA+CGG - chr8_2:3144633-3144652 Msa1227760:CDS 10.0%
!! ATTATTATTATTAGAGTCTT+AGG - chr8_2:3142600-3142619 Msa1227760:three_prime_UTR 15.0%
!! TGTTAATTCTAATTAACTTT+AGG - chr8_2:3142624-3142643 Msa1227760:three_prime_UTR 15.0%
!! TTAGATGTTTAAAGAAATAA+TGG + chr8_2:3143903-3143922 None:intergenic 15.0%
!!! ATTTTTTCAAAAACAAAAGT+TGG + chr8_2:3144580-3144599 None:intergenic 15.0%
!! TTTGAAAAAATCAAAAGTTA+AGG - chr8_2:3144589-3144608 Msa1227760:CDS 15.0%
!!! ATAATTAATGTTTTTTCTAC+GGG - chr8_2:3144634-3144653 Msa1227760:CDS 15.0%
!! ATTATTATTATTAGAGTCTT+AGG - chr8_2:3142600-3142619 Msa1227760:three_prime_UTR 15.0%
!! TGTTAATTCTAATTAACTTT+AGG - chr8_2:3142624-3142643 Msa1227760:three_prime_UTR 15.0%
!! TTAGATGTTTAAAGAAATAA+TGG + chr8_2:3143903-3143922 None:intergenic 15.0%
!!! ATTTTTTCAAAAACAAAAGT+TGG + chr8_2:3144580-3144599 None:intergenic 15.0%
!! TTTGAAAAAATCAAAAGTTA+AGG - chr8_2:3144589-3144608 Msa1227760:CDS 15.0%
!!! ATAATTAATGTTTTTTCTAC+GGG - chr8_2:3144634-3144653 Msa1227760:CDS 15.0%
!! GGCACTTAATTAAATATATA+TGG - chr8_2:3142645-3142664 Msa1227760:three_prime_UTR 20.0%
!!! TATATATGGTTTTTGGTTTA+AGG - chr8_2:3142659-3142678 Msa1227760:three_prime_UTR 20.0%
!!! TATTATCATTGGTTAACAAT+TGG - chr8_2:3142998-3143017 Msa1227760:CDS 20.0%
!!! ATTATCATTGGTTAACAATT+GGG - chr8_2:3142999-3143018 Msa1227760:CDS 20.0%
!! ATGGAAAAAATTAGAAAAGA+GGG + chr8_2:3143491-3143510 None:intergenic 20.0%
!! TATGGAAAAAATTAGAAAAG+AGG + chr8_2:3143492-3143511 None:intergenic 20.0%
!! GCAATATTATTATTGTGTTT+GGG + chr8_2:3143529-3143548 None:intergenic 20.0%
!! TGCAATATTATTATTGTGTT+TGG + chr8_2:3143530-3143549 None:intergenic 20.0%
!! AATATATTCAATTGAGTTCA+AGG + chr8_2:3143591-3143610 None:intergenic 20.0%
!! CTCAATTGAATATATTCTTT+AGG - chr8_2:3143595-3143614 Msa1227760:intron 20.0%
!!! TTGAATATATTCTTTAGGAA+TGG - chr8_2:3143600-3143619 Msa1227760:intron 20.0%
!! ATGTTTAAAGAAATAATGGT+TGG + chr8_2:3143899-3143918 None:intergenic 20.0%
!!! AGTTAAGTTGGAATAAATAA+AGG - chr8_2:3144377-3144396 Msa1227760:CDS 20.0%
!!! AAAAACAATTATTTTGAGAC+AGG - chr8_2:3144478-3144497 Msa1227760:intron 20.0%
!!! AAAACAATTATTTTGAGACA+GGG - chr8_2:3144479-3144498 Msa1227760:intron 20.0%
!! GGCACTTAATTAAATATATA+TGG - chr8_2:3142645-3142664 Msa1227760:three_prime_UTR 20.0%
!!! TATATATGGTTTTTGGTTTA+AGG - chr8_2:3142659-3142678 Msa1227760:three_prime_UTR 20.0%
!!! TATTATCATTGGTTAACAAT+TGG - chr8_2:3142998-3143017 Msa1227760:CDS 20.0%
!!! ATTATCATTGGTTAACAATT+GGG - chr8_2:3142999-3143018 Msa1227760:CDS 20.0%
!! ATGGAAAAAATTAGAAAAGA+GGG + chr8_2:3143491-3143510 None:intergenic 20.0%
!! TATGGAAAAAATTAGAAAAG+AGG + chr8_2:3143492-3143511 None:intergenic 20.0%
!! GCAATATTATTATTGTGTTT+GGG + chr8_2:3143529-3143548 None:intergenic 20.0%
!! TGCAATATTATTATTGTGTT+TGG + chr8_2:3143530-3143549 None:intergenic 20.0%
!! AATATATTCAATTGAGTTCA+AGG + chr8_2:3143591-3143610 None:intergenic 20.0%
!! CTCAATTGAATATATTCTTT+AGG - chr8_2:3143595-3143614 Msa1227760:intron 20.0%
!!! TTGAATATATTCTTTAGGAA+TGG - chr8_2:3143600-3143619 Msa1227760:intron 20.0%
!! ATGTTTAAAGAAATAATGGT+TGG + chr8_2:3143899-3143918 None:intergenic 20.0%
!!! AGTTAAGTTGGAATAAATAA+AGG - chr8_2:3144377-3144396 Msa1227760:CDS 20.0%
!!! AAAAACAATTATTTTGAGAC+AGG - chr8_2:3144478-3144497 Msa1227760:intron 20.0%
!!! AAAACAATTATTTTGAGACA+GGG - chr8_2:3144479-3144498 Msa1227760:intron 20.0%
! GAAAGGAAATAACACATAAT+TGG + chr8_2:3142456-3142475 None:intergenic 25.0%
! AATAGTGAGAAAAATGAGAA+AGG + chr8_2:3142473-3142492 None:intergenic 25.0%
! CAAATTCCATCTTAACTTAT+GGG - chr8_2:3142566-3142585 Msa1227760:three_prime_UTR 25.0%
! TTGAATCCATTTACATAGAA+AGG + chr8_2:3142754-3142773 None:intergenic 25.0%
! TTATGATGAAGTAGTATTCA+AGG - chr8_2:3142927-3142946 Msa1227760:CDS 25.0%
! AATCAGACTCATATTATCAT+TGG - chr8_2:3142987-3143006 Msa1227760:CDS 25.0%
!!! AATAGGAAGCATTAAGTTTT+AGG + chr8_2:3143170-3143189 None:intergenic 25.0%
! GATCAATCAAGAAATAGTAT+AGG + chr8_2:3143215-3143234 None:intergenic 25.0%
! ACTCACAAATATCACTTATA+AGG - chr8_2:3143267-3143286 Msa1227760:intron 25.0%
! TTGTTTCAAAGAGTTCAAAT+TGG + chr8_2:3143420-3143439 None:intergenic 25.0%
! TAATAAATTGGCGCTAAAAA+GGG + chr8_2:3143458-3143477 None:intergenic 25.0%
! TTAATAAATTGGCGCTAAAA+AGG + chr8_2:3143459-3143478 None:intergenic 25.0%
!!! TGGGTTTCTTTTTGAAAATA+TGG + chr8_2:3143510-3143529 None:intergenic 25.0%
! TCTTTAAACATCTAACATTC+AGG - chr8_2:3143908-3143927 Msa1227760:intron 25.0%
! CTATATGTTGAATTATAACC+AGG + chr8_2:3144079-3144098 None:intergenic 25.0%
! ATTCTAAACTCTACAAAGAA+AGG - chr8_2:3144130-3144149 Msa1227760:CDS 25.0%
! TCTTCGTTTATAAAAGAAGT+GGG + chr8_2:3144521-3144540 None:intergenic 25.0%
! TTCTTCGTTTATAAAAGAAG+TGG + chr8_2:3144522-3144541 None:intergenic 25.0%
! GAAAGGAAATAACACATAAT+TGG + chr8_2:3142456-3142475 None:intergenic 25.0%
! AATAGTGAGAAAAATGAGAA+AGG + chr8_2:3142473-3142492 None:intergenic 25.0%
! CAAATTCCATCTTAACTTAT+GGG - chr8_2:3142566-3142585 Msa1227760:three_prime_UTR 25.0%
! TTGAATCCATTTACATAGAA+AGG + chr8_2:3142754-3142773 None:intergenic 25.0%
! TTATGATGAAGTAGTATTCA+AGG - chr8_2:3142927-3142946 Msa1227760:CDS 25.0%
! AATCAGACTCATATTATCAT+TGG - chr8_2:3142987-3143006 Msa1227760:CDS 25.0%
!!! AATAGGAAGCATTAAGTTTT+AGG + chr8_2:3143170-3143189 None:intergenic 25.0%
! GATCAATCAAGAAATAGTAT+AGG + chr8_2:3143215-3143234 None:intergenic 25.0%
! ACTCACAAATATCACTTATA+AGG - chr8_2:3143267-3143286 Msa1227760:intron 25.0%
! TTGTTTCAAAGAGTTCAAAT+TGG + chr8_2:3143420-3143439 None:intergenic 25.0%
! TAATAAATTGGCGCTAAAAA+GGG + chr8_2:3143458-3143477 None:intergenic 25.0%
! TTAATAAATTGGCGCTAAAA+AGG + chr8_2:3143459-3143478 None:intergenic 25.0%
!!! TGGGTTTCTTTTTGAAAATA+TGG + chr8_2:3143510-3143529 None:intergenic 25.0%
! TCTTTAAACATCTAACATTC+AGG - chr8_2:3143908-3143927 Msa1227760:intron 25.0%
! CTATATGTTGAATTATAACC+AGG + chr8_2:3144079-3144098 None:intergenic 25.0%
! ATTCTAAACTCTACAAAGAA+AGG - chr8_2:3144130-3144149 Msa1227760:CDS 25.0%
! TCTTCGTTTATAAAAGAAGT+GGG + chr8_2:3144521-3144540 None:intergenic 25.0%
! TTCTTCGTTTATAAAAGAAG+TGG + chr8_2:3144522-3144541 None:intergenic 25.0%
ATGACACTGAATATGAAGAT+TGG - chr8_2:3142524-3142543 Msa1227760:three_prime_UTR 30.0%
TGACACTGAATATGAAGATT+GGG - chr8_2:3142525-3142544 Msa1227760:three_prime_UTR 30.0%
CCATAAGTTAAGATGGAATT+TGG + chr8_2:3142568-3142587 None:intergenic 30.0%
CCAAATTCCATCTTAACTTA+TGG - chr8_2:3142565-3142584 Msa1227760:three_prime_UTR 30.0%
!!! TTTTGGTTTAAGGAGTGAAA+TGG - chr8_2:3142669-3142688 Msa1227760:three_prime_UTR 30.0%
ATCCATTTACATAGAAAGGT+TGG + chr8_2:3142750-3142769 None:intergenic 30.0%
! TAAATGGATTCAACACTTAC+TGG - chr8_2:3142761-3142780 Msa1227760:CDS 30.0%
ACTACTTCATCATAAAGTGA+TGG + chr8_2:3142922-3142941 None:intergenic 30.0%
! AAGATCCAACAATTTTTGCT+TGG - chr8_2:3143290-3143309 Msa1227760:CDS 30.0%
! AGATCCAACAATTTTTGCTT+GGG - chr8_2:3143291-3143310 Msa1227760:CDS 30.0%
AATAAATTGGCGCTAAAAAG+GGG + chr8_2:3143457-3143476 None:intergenic 30.0%
TATTCAATTGAGTTCAAGGA+AGG + chr8_2:3143587-3143606 None:intergenic 30.0%
TTAGGAATGGATAAAAGAGA+TGG - chr8_2:3143613-3143632 Msa1227760:intron 30.0%
TACTTAAGTAGAAGTCATCA+AGG + chr8_2:3143844-3143863 None:intergenic 30.0%
GATATCATGCTTGAAATAGA+AGG + chr8_2:3144247-3144266 None:intergenic 30.0%
ATGACACTGAATATGAAGAT+TGG - chr8_2:3142524-3142543 Msa1227760:three_prime_UTR 30.0%
TGACACTGAATATGAAGATT+GGG - chr8_2:3142525-3142544 Msa1227760:three_prime_UTR 30.0%
CCATAAGTTAAGATGGAATT+TGG + chr8_2:3142568-3142587 None:intergenic 30.0%
CCAAATTCCATCTTAACTTA+TGG - chr8_2:3142565-3142584 Msa1227760:three_prime_UTR 30.0%
!!! TTTTGGTTTAAGGAGTGAAA+TGG - chr8_2:3142669-3142688 Msa1227760:three_prime_UTR 30.0%
ATCCATTTACATAGAAAGGT+TGG + chr8_2:3142750-3142769 None:intergenic 30.0%
! TAAATGGATTCAACACTTAC+TGG - chr8_2:3142761-3142780 Msa1227760:CDS 30.0%
ACTACTTCATCATAAAGTGA+TGG + chr8_2:3142922-3142941 None:intergenic 30.0%
! AAGATCCAACAATTTTTGCT+TGG - chr8_2:3143290-3143309 Msa1227760:CDS 30.0%
! AGATCCAACAATTTTTGCTT+GGG - chr8_2:3143291-3143310 Msa1227760:CDS 30.0%
AATAAATTGGCGCTAAAAAG+GGG + chr8_2:3143457-3143476 None:intergenic 30.0%
TATTCAATTGAGTTCAAGGA+AGG + chr8_2:3143587-3143606 None:intergenic 30.0%
TTAGGAATGGATAAAAGAGA+TGG - chr8_2:3143613-3143632 Msa1227760:intron 30.0%
TACTTAAGTAGAAGTCATCA+AGG + chr8_2:3143844-3143863 None:intergenic 30.0%
GATATCATGCTTGAAATAGA+AGG + chr8_2:3144247-3144266 None:intergenic 30.0%
TACGTACCCATAAGTTAAGA+TGG + chr8_2:3142575-3142594 None:intergenic 35.0%
GACCAACCTTTCTATGTAAA+TGG - chr8_2:3142745-3142764 Msa1227760:CDS 35.0%
! ATTCAACACTTACTGGTTGA+TGG - chr8_2:3142768-3142787 Msa1227760:CDS 35.0%
TTCAAACATGCATTCTCAGT+TGG - chr8_2:3142835-3142854 Msa1227760:CDS 35.0%
TATGACAGTTTGTAGGACTT+GGG - chr8_2:3142858-3142877 Msa1227760:CDS 35.0%
! AAGTGATGGTGATTTCTGAA+GGG + chr8_2:3142908-3142927 None:intergenic 35.0%
! AAAGTGATGGTGATTTCTGA+AGG + chr8_2:3142909-3142928 None:intergenic 35.0%
! ATCATTGGTTAACAATTGGG+AGG - chr8_2:3143002-3143021 Msa1227760:CDS 35.0%
TGAGAAAAAGTCATCATCAG+AGG + chr8_2:3143085-3143104 None:intergenic 35.0%
!! TTTTAGGTACATCTCAAGCT+AGG + chr8_2:3143154-3143173 None:intergenic 35.0%
ATAAATTGGCGCTAAAAAGG+GGG + chr8_2:3143456-3143475 None:intergenic 35.0%
!! ATTGGCCTAGAAGGATTTTA+TGG - chr8_2:3143677-3143696 Msa1227760:intron 35.0%
CCTGTTGAGCATATGAATTT+GGG + chr8_2:3143733-3143752 None:intergenic 35.0%
ACCTGTTGAGCATATGAATT+TGG + chr8_2:3143734-3143753 None:intergenic 35.0%
AATTCATATGCTCAACAGGT+TGG - chr8_2:3143734-3143753 Msa1227760:intron 35.0%
! TGATTTTATCAGAAACCACC+AGG - chr8_2:3143760-3143779 Msa1227760:CDS 35.0%
CTCATATATATCCAGACTCT+TGG - chr8_2:3143807-3143826 Msa1227760:CDS 35.0%
ATATATCCAGACTCTTGGTA+AGG - chr8_2:3143812-3143831 Msa1227760:CDS 35.0%
TAAGTAGAAGTCATCAAGGA+AGG + chr8_2:3143840-3143859 None:intergenic 35.0%
GATTGTGAAATCCTTCAACA+AGG + chr8_2:3143938-3143957 None:intergenic 35.0%
AAGACTTCACAAATGGGATA+TGG + chr8_2:3143973-3143992 None:intergenic 35.0%
ATATCCCATTTGTGAAGTCT+TGG - chr8_2:3143972-3143991 Msa1227760:intron 35.0%
!! TGAAAAGTATCTTGGAATGC+CGG - chr8_2:3144018-3144037 Msa1227760:CDS 35.0%
CTAAACTCTACAAAGAAAGG+AGG - chr8_2:3144133-3144152 Msa1227760:CDS 35.0%
TACGTACCCATAAGTTAAGA+TGG + chr8_2:3142575-3142594 None:intergenic 35.0%
GACCAACCTTTCTATGTAAA+TGG - chr8_2:3142745-3142764 Msa1227760:CDS 35.0%
! ATTCAACACTTACTGGTTGA+TGG - chr8_2:3142768-3142787 Msa1227760:CDS 35.0%
TTCAAACATGCATTCTCAGT+TGG - chr8_2:3142835-3142854 Msa1227760:CDS 35.0%
TATGACAGTTTGTAGGACTT+GGG - chr8_2:3142858-3142877 Msa1227760:CDS 35.0%
! AAGTGATGGTGATTTCTGAA+GGG + chr8_2:3142908-3142927 None:intergenic 35.0%
! AAAGTGATGGTGATTTCTGA+AGG + chr8_2:3142909-3142928 None:intergenic 35.0%
! ATCATTGGTTAACAATTGGG+AGG - chr8_2:3143002-3143021 Msa1227760:CDS 35.0%
TGAGAAAAAGTCATCATCAG+AGG + chr8_2:3143085-3143104 None:intergenic 35.0%
!! TTTTAGGTACATCTCAAGCT+AGG + chr8_2:3143154-3143173 None:intergenic 35.0%
ATAAATTGGCGCTAAAAAGG+GGG + chr8_2:3143456-3143475 None:intergenic 35.0%
!! ATTGGCCTAGAAGGATTTTA+TGG - chr8_2:3143677-3143696 Msa1227760:intron 35.0%
CCTGTTGAGCATATGAATTT+GGG + chr8_2:3143733-3143752 None:intergenic 35.0%
ACCTGTTGAGCATATGAATT+TGG + chr8_2:3143734-3143753 None:intergenic 35.0%
AATTCATATGCTCAACAGGT+TGG - chr8_2:3143734-3143753 Msa1227760:intron 35.0%
! TGATTTTATCAGAAACCACC+AGG - chr8_2:3143760-3143779 Msa1227760:CDS 35.0%
CTCATATATATCCAGACTCT+TGG - chr8_2:3143807-3143826 Msa1227760:CDS 35.0%
ATATATCCAGACTCTTGGTA+AGG - chr8_2:3143812-3143831 Msa1227760:CDS 35.0%
TAAGTAGAAGTCATCAAGGA+AGG + chr8_2:3143840-3143859 None:intergenic 35.0%
GATTGTGAAATCCTTCAACA+AGG + chr8_2:3143938-3143957 None:intergenic 35.0%
AAGACTTCACAAATGGGATA+TGG + chr8_2:3143973-3143992 None:intergenic 35.0%
ATATCCCATTTGTGAAGTCT+TGG - chr8_2:3143972-3143991 Msa1227760:intron 35.0%
!! TGAAAAGTATCTTGGAATGC+CGG - chr8_2:3144018-3144037 Msa1227760:CDS 35.0%
CTAAACTCTACAAAGAAAGG+AGG - chr8_2:3144133-3144152 Msa1227760:CDS 35.0%
TGGCTGGGTAACATAACATA+TGG - chr8_2:3142411-3142430 Msa1227760:three_prime_UTR 40.0%
ATCAAATGCAGTTGAGCTGA+AGG + chr8_2:3142506-3142525 None:intergenic 40.0%
TGGTTTAAGGAGTGAAATGG+AGG - chr8_2:3142672-3142691 Msa1227760:three_prime_UTR 40.0%
GTTGGTCATTCACTGCAAAT+TGG + chr8_2:3142732-3142751 None:intergenic 40.0%
! CAGTTGGTATGACAGTTTGT+AGG - chr8_2:3142851-3142870 Msa1227760:CDS 40.0%
GTATGACAGTTTGTAGGACT+TGG - chr8_2:3142857-3142876 Msa1227760:CDS 40.0%
TTCACTCACCACAAAATCCA+GGG + chr8_2:3142953-3142972 None:intergenic 40.0%
! GTTAACAATTGGGAGGCATA+TGG - chr8_2:3143009-3143028 Msa1227760:CDS 40.0%
CAAAGCACAGTATGTCAAGT+GGG - chr8_2:3143035-3143054 Msa1227760:CDS 40.0%
AAAGCACAGTATGTCAAGTG+GGG - chr8_2:3143036-3143055 Msa1227760:CDS 40.0%
CATCATCAGAGGTCAAGTTA+AGG + chr8_2:3143074-3143093 None:intergenic 40.0%
AGCTCCCAAGCAAAAATTGT+TGG + chr8_2:3143298-3143317 None:intergenic 40.0%
!! TGAAATCTCTGAGGTGTTGA+GGG + chr8_2:3143704-3143723 None:intergenic 40.0%
CCCAAATTCATATGCTCAAC+AGG - chr8_2:3143730-3143749 Msa1227760:intron 40.0%
ATTCAGGCTTACCTTGTTGA+AGG - chr8_2:3143924-3143943 Msa1227760:intron 40.0%
CCATCCAAGACTTCACAAAT+GGG + chr8_2:3143979-3143998 None:intergenic 40.0%
TCCATCCAAGACTTCACAAA+TGG + chr8_2:3143980-3143999 None:intergenic 40.0%
! CTTTTCAGCATCCTCTATGT+GGG + chr8_2:3144005-3144024 None:intergenic 40.0%
! ACTTTTCAGCATCCTCTATG+TGG + chr8_2:3144006-3144025 None:intergenic 40.0%
!! GAGGATGCTGAAAAGTATCT+TGG - chr8_2:3144010-3144029 Msa1227760:CDS 40.0%
CCAAACTCACCAAAAACAAC+CGG + chr8_2:3144040-3144059 None:intergenic 40.0%
TCTACAAAGAAAGGAGGTAG+TGG - chr8_2:3144139-3144158 Msa1227760:CDS 40.0%
CTACAAAGAAAGGAGGTAGT+GGG - chr8_2:3144140-3144159 Msa1227760:CDS 40.0%
TACAAAGAAAGGAGGTAGTG+GGG - chr8_2:3144141-3144160 Msa1227760:CDS 40.0%
TCCTGATGGAACAGATTACA+TGG - chr8_2:3144189-3144208 Msa1227760:CDS 40.0%
TCCATGTAATCTGTTCCATC+AGG + chr8_2:3144193-3144212 None:intergenic 40.0%
GGAACAGATTACATGGATGA+TGG - chr8_2:3144196-3144215 Msa1227760:CDS 40.0%
TGATATCCCTTCAATCCACA+AGG - chr8_2:3144260-3144279 Msa1227760:CDS 40.0%
! TTTTCTTCTTACAACCCCAG+TGG + chr8_2:3144321-3144340 None:intergenic 40.0%
CTGGGGTTGTAAGAAGAAAA+AGG - chr8_2:3144321-3144340 Msa1227760:CDS 40.0%
GTTGCAAAATGTAGTCTACG+AGG - chr8_2:3144345-3144364 Msa1227760:CDS 40.0%
AAATGTAGTCTACGAGGATG+AGG - chr8_2:3144351-3144370 Msa1227760:CDS 40.0%
AGGATGAGGAGTAGTTAAGT+TGG - chr8_2:3144365-3144384 Msa1227760:CDS 40.0%
TGGCTGGGTAACATAACATA+TGG - chr8_2:3142411-3142430 Msa1227760:three_prime_UTR 40.0%
ATCAAATGCAGTTGAGCTGA+AGG + chr8_2:3142506-3142525 None:intergenic 40.0%
TGGTTTAAGGAGTGAAATGG+AGG - chr8_2:3142672-3142691 Msa1227760:three_prime_UTR 40.0%
GTTGGTCATTCACTGCAAAT+TGG + chr8_2:3142732-3142751 None:intergenic 40.0%
! CAGTTGGTATGACAGTTTGT+AGG - chr8_2:3142851-3142870 Msa1227760:CDS 40.0%
GTATGACAGTTTGTAGGACT+TGG - chr8_2:3142857-3142876 Msa1227760:CDS 40.0%
TTCACTCACCACAAAATCCA+GGG + chr8_2:3142953-3142972 None:intergenic 40.0%
! GTTAACAATTGGGAGGCATA+TGG - chr8_2:3143009-3143028 Msa1227760:CDS 40.0%
CAAAGCACAGTATGTCAAGT+GGG - chr8_2:3143035-3143054 Msa1227760:CDS 40.0%
AAAGCACAGTATGTCAAGTG+GGG - chr8_2:3143036-3143055 Msa1227760:CDS 40.0%
CATCATCAGAGGTCAAGTTA+AGG + chr8_2:3143074-3143093 None:intergenic 40.0%
AGCTCCCAAGCAAAAATTGT+TGG + chr8_2:3143298-3143317 None:intergenic 40.0%
!! TGAAATCTCTGAGGTGTTGA+GGG + chr8_2:3143704-3143723 None:intergenic 40.0%
CCCAAATTCATATGCTCAAC+AGG - chr8_2:3143730-3143749 Msa1227760:intron 40.0%
ATTCAGGCTTACCTTGTTGA+AGG - chr8_2:3143924-3143943 Msa1227760:intron 40.0%
CCATCCAAGACTTCACAAAT+GGG + chr8_2:3143979-3143998 None:intergenic 40.0%
TCCATCCAAGACTTCACAAA+TGG + chr8_2:3143980-3143999 None:intergenic 40.0%
! CTTTTCAGCATCCTCTATGT+GGG + chr8_2:3144005-3144024 None:intergenic 40.0%
! ACTTTTCAGCATCCTCTATG+TGG + chr8_2:3144006-3144025 None:intergenic 40.0%
!! GAGGATGCTGAAAAGTATCT+TGG - chr8_2:3144010-3144029 Msa1227760:CDS 40.0%
CCAAACTCACCAAAAACAAC+CGG + chr8_2:3144040-3144059 None:intergenic 40.0%
TCTACAAAGAAAGGAGGTAG+TGG - chr8_2:3144139-3144158 Msa1227760:CDS 40.0%
CTACAAAGAAAGGAGGTAGT+GGG - chr8_2:3144140-3144159 Msa1227760:CDS 40.0%
TACAAAGAAAGGAGGTAGTG+GGG - chr8_2:3144141-3144160 Msa1227760:CDS 40.0%
TCCTGATGGAACAGATTACA+TGG - chr8_2:3144189-3144208 Msa1227760:CDS 40.0%
TCCATGTAATCTGTTCCATC+AGG + chr8_2:3144193-3144212 None:intergenic 40.0%
GGAACAGATTACATGGATGA+TGG - chr8_2:3144196-3144215 Msa1227760:CDS 40.0%
TGATATCCCTTCAATCCACA+AGG - chr8_2:3144260-3144279 Msa1227760:CDS 40.0%
! TTTTCTTCTTACAACCCCAG+TGG + chr8_2:3144321-3144340 None:intergenic 40.0%
CTGGGGTTGTAAGAAGAAAA+AGG - chr8_2:3144321-3144340 Msa1227760:CDS 40.0%
GTTGCAAAATGTAGTCTACG+AGG - chr8_2:3144345-3144364 Msa1227760:CDS 40.0%
AAATGTAGTCTACGAGGATG+AGG - chr8_2:3144351-3144370 Msa1227760:CDS 40.0%
AGGATGAGGAGTAGTTAAGT+TGG - chr8_2:3144365-3144384 Msa1227760:CDS 40.0%
GTGAAATGGAGGAAGCTGAA+TGG - chr8_2:3142683-3142702 Msa1227760:three_prime_UTR 45.0%
TGGCAGATGGTGCAAAAGAA+AGG - chr8_2:3142703-3142722 Msa1227760:three_prime_UTR 45.0%
!! CTGGTTGATGGTATTTGCTG+CGG - chr8_2:3142780-3142799 Msa1227760:CDS 45.0%
TCTCCATTGGCCATCATTGA+AGG + chr8_2:3142884-3142903 None:intergenic 45.0%
! ATTTCTGAAGGGCTCTCCAT+TGG + chr8_2:3142897-3142916 None:intergenic 45.0%
TGAAGTAGTATTCAAGGCCC+TGG - chr8_2:3142933-3142952 Msa1227760:CDS 45.0%
! ATTCAAGGCCCTGGATTTTG+TGG - chr8_2:3142942-3142961 Msa1227760:CDS 45.0%
CTTCACTCACCACAAAATCC+AGG + chr8_2:3142954-3142973 None:intergenic 45.0%
! AACAATTGGGAGGCATATGG+TGG - chr8_2:3143012-3143031 Msa1227760:CDS 45.0%
GCAAAGCACAGTATGTCAAG+TGG - chr8_2:3143034-3143053 Msa1227760:CDS 45.0%
TTCTCACATCCAACTCTCAG+AGG - chr8_2:3143099-3143118 Msa1227760:CDS 45.0%
! TTGTAGTAGCCTCTGAGAGT+TGG + chr8_2:3143111-3143130 None:intergenic 45.0%
AACTCTCAGAGGCTACTACA+AGG - chr8_2:3143110-3143129 Msa1227760:CDS 45.0%
CTACTACAAGGACCATGTCA+AGG - chr8_2:3143122-3143141 Msa1227760:CDS 45.0%
GCTAGGAACTTACCTTGACA+TGG + chr8_2:3143137-3143156 None:intergenic 45.0%
TACCTGTAACGTATCACCAG+AGG + chr8_2:3143350-3143369 None:intergenic 45.0%
CCAATCTCCAGTAGGTGTTT+CGG + chr8_2:3143662-3143681 None:intergenic 45.0%
AGGGGCCATAAAATCCTTCT+AGG + chr8_2:3143685-3143704 None:intergenic 45.0%
!! GAAATCTCTGAGGTGTTGAG+GGG + chr8_2:3143703-3143722 None:intergenic 45.0%
!! CTGAAATCTCTGAGGTGTTG+AGG + chr8_2:3143705-3143724 None:intergenic 45.0%
GGGTTGAACTGAAATCTCTG+AGG + chr8_2:3143713-3143732 None:intergenic 45.0%
ATCAGAAACCACCAGGTTCT+AGG - chr8_2:3143767-3143786 Msa1227760:CDS 45.0%
AAGGAACCTTACCAAGAGTC+TGG + chr8_2:3143821-3143840 None:intergenic 45.0%
CCCATTTGTGAAGTCTTGGA+TGG - chr8_2:3143976-3143995 Msa1227760:CDS 45.0%
!! CTTGGAATGCCGGTTGTTTT+TGG - chr8_2:3144028-3144047 Msa1227760:CDS 45.0%
!!! CCGGTTGTTTTTGGTGAGTT+TGG - chr8_2:3144037-3144056 Msa1227760:CDS 45.0%
GGTGTATCTGCAAAAGATCC+TGG - chr8_2:3144058-3144077 Msa1227760:CDS 45.0%
CAGGAAAGAACTGCCACAAA+AGG + chr8_2:3144174-3144193 None:intergenic 45.0%
TTGTGGCAGTTCTTTCCTGA+TGG - chr8_2:3144175-3144194 Msa1227760:CDS 45.0%
AGAGCAGAGGGAGTTGAATA+GGG + chr8_2:3144290-3144309 None:intergenic 45.0%
GTGAAATGGAGGAAGCTGAA+TGG - chr8_2:3142683-3142702 Msa1227760:three_prime_UTR 45.0%
TGGCAGATGGTGCAAAAGAA+AGG - chr8_2:3142703-3142722 Msa1227760:three_prime_UTR 45.0%
!! CTGGTTGATGGTATTTGCTG+CGG - chr8_2:3142780-3142799 Msa1227760:CDS 45.0%
TCTCCATTGGCCATCATTGA+AGG + chr8_2:3142884-3142903 None:intergenic 45.0%
! ATTTCTGAAGGGCTCTCCAT+TGG + chr8_2:3142897-3142916 None:intergenic 45.0%
TGAAGTAGTATTCAAGGCCC+TGG - chr8_2:3142933-3142952 Msa1227760:CDS 45.0%
! ATTCAAGGCCCTGGATTTTG+TGG - chr8_2:3142942-3142961 Msa1227760:CDS 45.0%
CTTCACTCACCACAAAATCC+AGG + chr8_2:3142954-3142973 None:intergenic 45.0%
! AACAATTGGGAGGCATATGG+TGG - chr8_2:3143012-3143031 Msa1227760:CDS 45.0%
GCAAAGCACAGTATGTCAAG+TGG - chr8_2:3143034-3143053 Msa1227760:CDS 45.0%
TTCTCACATCCAACTCTCAG+AGG - chr8_2:3143099-3143118 Msa1227760:CDS 45.0%
! TTGTAGTAGCCTCTGAGAGT+TGG + chr8_2:3143111-3143130 None:intergenic 45.0%
AACTCTCAGAGGCTACTACA+AGG - chr8_2:3143110-3143129 Msa1227760:CDS 45.0%
CTACTACAAGGACCATGTCA+AGG - chr8_2:3143122-3143141 Msa1227760:CDS 45.0%
GCTAGGAACTTACCTTGACA+TGG + chr8_2:3143137-3143156 None:intergenic 45.0%
TACCTGTAACGTATCACCAG+AGG + chr8_2:3143350-3143369 None:intergenic 45.0%
CCAATCTCCAGTAGGTGTTT+CGG + chr8_2:3143662-3143681 None:intergenic 45.0%
AGGGGCCATAAAATCCTTCT+AGG + chr8_2:3143685-3143704 None:intergenic 45.0%
!! GAAATCTCTGAGGTGTTGAG+GGG + chr8_2:3143703-3143722 None:intergenic 45.0%
!! CTGAAATCTCTGAGGTGTTG+AGG + chr8_2:3143705-3143724 None:intergenic 45.0%
GGGTTGAACTGAAATCTCTG+AGG + chr8_2:3143713-3143732 None:intergenic 45.0%
ATCAGAAACCACCAGGTTCT+AGG - chr8_2:3143767-3143786 Msa1227760:CDS 45.0%
AAGGAACCTTACCAAGAGTC+TGG + chr8_2:3143821-3143840 None:intergenic 45.0%
CCCATTTGTGAAGTCTTGGA+TGG - chr8_2:3143976-3143995 Msa1227760:CDS 45.0%
!! CTTGGAATGCCGGTTGTTTT+TGG - chr8_2:3144028-3144047 Msa1227760:CDS 45.0%
!!! CCGGTTGTTTTTGGTGAGTT+TGG - chr8_2:3144037-3144056 Msa1227760:CDS 45.0%
GGTGTATCTGCAAAAGATCC+TGG - chr8_2:3144058-3144077 Msa1227760:CDS 45.0%
CAGGAAAGAACTGCCACAAA+AGG + chr8_2:3144174-3144193 None:intergenic 45.0%
TTGTGGCAGTTCTTTCCTGA+TGG - chr8_2:3144175-3144194 Msa1227760:CDS 45.0%
AGAGCAGAGGGAGTTGAATA+GGG + chr8_2:3144290-3144309 None:intergenic 45.0%
AGGACTTGGGCCTTCAATGA+TGG - chr8_2:3142871-3142890 Msa1227760:CDS 50.0%
CTCCTCTGGTGATACGTTAC+AGG - chr8_2:3143345-3143364 Msa1227760:CDS 50.0%
CGTTGATCCGAAACACCTAC+TGG - chr8_2:3143652-3143671 Msa1227760:intron 50.0%
CCGAAACACCTACTGGAGAT+TGG - chr8_2:3143659-3143678 Msa1227760:intron 50.0%
CTTCTAGGCCAATCTCCAGT+AGG + chr8_2:3143670-3143689 None:intergenic 50.0%
!! CTACTGGAGATTGGCCTAGA+AGG - chr8_2:3143668-3143687 Msa1227760:intron 50.0%
CAAAGTCGACACCTAGAACC+TGG + chr8_2:3143781-3143800 None:intergenic 50.0%
TTGGATGGAAGCCCACATAG+AGG - chr8_2:3143991-3144010 Msa1227760:CDS 50.0%
! GGCAAGCCTTGTGGATTGAA+GGG + chr8_2:3144269-3144288 None:intergenic 50.0%
GTTGAATAGGGCAAGCCTTG+TGG + chr8_2:3144278-3144297 None:intergenic 50.0%
CAGAGCAGAGGGAGTTGAAT+AGG + chr8_2:3144291-3144310 None:intergenic 50.0%
AGGACTTGGGCCTTCAATGA+TGG - chr8_2:3142871-3142890 Msa1227760:CDS 50.0%
CTCCTCTGGTGATACGTTAC+AGG - chr8_2:3143345-3143364 Msa1227760:CDS 50.0%
CGTTGATCCGAAACACCTAC+TGG - chr8_2:3143652-3143671 Msa1227760:intron 50.0%
CCGAAACACCTACTGGAGAT+TGG - chr8_2:3143659-3143678 Msa1227760:intron 50.0%
CTTCTAGGCCAATCTCCAGT+AGG + chr8_2:3143670-3143689 None:intergenic 50.0%
!! CTACTGGAGATTGGCCTAGA+AGG - chr8_2:3143668-3143687 Msa1227760:intron 50.0%
CAAAGTCGACACCTAGAACC+TGG + chr8_2:3143781-3143800 None:intergenic 50.0%
TTGGATGGAAGCCCACATAG+AGG - chr8_2:3143991-3144010 Msa1227760:CDS 50.0%
! GGCAAGCCTTGTGGATTGAA+GGG + chr8_2:3144269-3144288 None:intergenic 50.0%
GTTGAATAGGGCAAGCCTTG+TGG + chr8_2:3144278-3144297 None:intergenic 50.0%
CAGAGCAGAGGGAGTTGAAT+AGG + chr8_2:3144291-3144310 None:intergenic 50.0%
GGAGGAAGCTGAATGGCAGA+TGG - chr8_2:3142690-3142709 Msa1227760:three_prime_UTR 55.0%
GGACGAGTCGACAAGAGGAA+GGG - chr8_2:3142801-3142820 Msa1227760:CDS 55.0%
GACAAGAGGAAGGGTCACTC+AGG - chr8_2:3142810-3142829 Msa1227760:CDS 55.0%
GGGCCTTCAATGATGGCCAA+TGG - chr8_2:3142878-3142897 Msa1227760:CDS 55.0%
CGTATCACCAGAGGAGTCAG+AGG + chr8_2:3143341-3143360 None:intergenic 55.0%
AGTCGACACCTAGAACCTGG+TGG + chr8_2:3143778-3143797 None:intergenic 55.0%
!! AAGAAAGGAGGTAGTGGGGC+TGG - chr8_2:3144145-3144164 Msa1227760:CDS 55.0%
! GGGCAAGCCTTGTGGATTGA+AGG + chr8_2:3144270-3144289 None:intergenic 55.0%
GTGGCATCTCTCAGAGCAGA+GGG + chr8_2:3144302-3144321 None:intergenic 55.0%
AGTGGCATCTCTCAGAGCAG+AGG + chr8_2:3144303-3144322 None:intergenic 55.0%
!! TCTGCTCTGAGAGATGCCAC+TGG - chr8_2:3144302-3144321 Msa1227760:CDS 55.0%
!! CTGCTCTGAGAGATGCCACT+GGG - chr8_2:3144303-3144322 Msa1227760:CDS 55.0%
!! TGCTCTGAGAGATGCCACTG+GGG - chr8_2:3144304-3144323 Msa1227760:CDS 55.0%
GGAGGAAGCTGAATGGCAGA+TGG - chr8_2:3142690-3142709 Msa1227760:three_prime_UTR 55.0%
GGACGAGTCGACAAGAGGAA+GGG - chr8_2:3142801-3142820 Msa1227760:CDS 55.0%
GACAAGAGGAAGGGTCACTC+AGG - chr8_2:3142810-3142829 Msa1227760:CDS 55.0%
GGGCCTTCAATGATGGCCAA+TGG - chr8_2:3142878-3142897 Msa1227760:CDS 55.0%
CGTATCACCAGAGGAGTCAG+AGG + chr8_2:3143341-3143360 None:intergenic 55.0%
AGTCGACACCTAGAACCTGG+TGG + chr8_2:3143778-3143797 None:intergenic 55.0%
!! AAGAAAGGAGGTAGTGGGGC+TGG - chr8_2:3144145-3144164 Msa1227760:CDS 55.0%
! GGGCAAGCCTTGTGGATTGA+AGG + chr8_2:3144270-3144289 None:intergenic 55.0%
GTGGCATCTCTCAGAGCAGA+GGG + chr8_2:3144302-3144321 None:intergenic 55.0%
AGTGGCATCTCTCAGAGCAG+AGG + chr8_2:3144303-3144322 None:intergenic 55.0%
!! TCTGCTCTGAGAGATGCCAC+TGG - chr8_2:3144302-3144321 Msa1227760:CDS 55.0%
!! CTGCTCTGAGAGATGCCACT+GGG - chr8_2:3144303-3144322 Msa1227760:CDS 55.0%
!! TGCTCTGAGAGATGCCACTG+GGG - chr8_2:3144304-3144323 Msa1227760:CDS 55.0%
CGGACGAGTCGACAAGAGGA+AGG - chr8_2:3142800-3142819 Msa1227760:CDS 60.0%
GTCAAGTGGGGCAATGCTGC+TGG - chr8_2:3143048-3143067 Msa1227760:CDS 60.0%
! GAGGAGTCAGAGGTGCATCG+AGG + chr8_2:3143331-3143350 None:intergenic 60.0%
CGATGCACCTCTGACTCCTC+TGG - chr8_2:3143331-3143350 Msa1227760:CDS 60.0%
! GTGGGGCTGGAAGCCTTTTG+TGG - chr8_2:3144158-3144177 Msa1227760:CDS 60.0%
CGGACGAGTCGACAAGAGGA+AGG - chr8_2:3142800-3142819 Msa1227760:CDS 60.0%
GTCAAGTGGGGCAATGCTGC+TGG - chr8_2:3143048-3143067 Msa1227760:CDS 60.0%
! GAGGAGTCAGAGGTGCATCG+AGG + chr8_2:3143331-3143350 None:intergenic 60.0%
CGATGCACCTCTGACTCCTC+TGG - chr8_2:3143331-3143350 Msa1227760:CDS 60.0%
! GTGGGGCTGGAAGCCTTTTG+TGG - chr8_2:3144158-3144177 Msa1227760:CDS 60.0%
GCTGCGGACGAGTCGACAAG+AGG - chr8_2:3142796-3142815 Msa1227760:CDS 65.0%
GCTGCGGACGAGTCGACAAG+AGG - chr8_2:3142796-3142815 Msa1227760:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 3142399 3144719 3142399 ID=Msa1227760;Name=Msa1227760
chr8_2 mRNA 3142399 3144719 3142399 ID=Msa1227760-mRNA-1;Parent=Msa1227760;Name=Msa1227760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=31|1|1|1|1|1|5|341|462
chr8_2 exon 3142399 3143172 3142399 ID=Msa1227760-mRNA-1:exon:913;Parent=Msa1227760-mRNA-1
chr8_2 exon 3143290 3143501 3143290 ID=Msa1227760-mRNA-1:exon:912;Parent=Msa1227760-mRNA-1
chr8_2 exon 3143752 3143874 3143752 ID=Msa1227760-mRNA-1:exon:911;Parent=Msa1227760-mRNA-1
chr8_2 exon 3143975 3144437 3143975 ID=Msa1227760-mRNA-1:exon:910;Parent=Msa1227760-mRNA-1
chr8_2 exon 3144531 3144719 3144531 ID=Msa1227760-mRNA-1:exon:909;Parent=Msa1227760-mRNA-1
chr8_2 five_prime_UTR 3144689 3144719 3144689 ID=Msa1227760-mRNA-1:five_prime_utr;Parent=Msa1227760-mRNA-1
chr8_2 CDS 3144531 3144688 3144531 ID=Msa1227760-mRNA-1:cds;Parent=Msa1227760-mRNA-1
chr8_2 CDS 3143975 3144437 3143975 ID=Msa1227760-mRNA-1:cds;Parent=Msa1227760-mRNA-1
chr8_2 CDS 3143752 3143874 3143752 ID=Msa1227760-mRNA-1:cds;Parent=Msa1227760-mRNA-1
chr8_2 CDS 3143290 3143501 3143290 ID=Msa1227760-mRNA-1:cds;Parent=Msa1227760-mRNA-1
chr8_2 CDS 3142740 3143172 3142740 ID=Msa1227760-mRNA-1:cds;Parent=Msa1227760-mRNA-1
chr8_2 three_prime_UTR 3142399 3142739 3142399 ID=Msa1227760-mRNA-1:three_prime_utr;Parent=Msa1227760-mRNA-1
Gene Sequence

>Msa1227760

ATGGAAGCAATATTCAAGAGATTCCAATTATGTGTTATTTCCTTTCTCATTTTTCTCACTATTCTTACTCAAACCTTCAGCTCAACTGCATTTGATGACACTGAATATGAAGATTGGGAAAGCAATATTCATATACCAAATTCCATCTTAACTTATGGGAGTGAAATGGAGGAAGCTGAATGGCAGATGGTGCAAAAGAAAGGAAACCAATTTGCAGTGAATGACCAACCTTTCTATGTAAATGGATTCAACACTTACTGGTTGATGGTATTTGCTGCGGACGAGTCGACAAGAGGAAGGGTCACTCAGGTGTTCAAACATGCATTCTCAGTTGGTATGACAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGAGAGCCCTTCAGAAATCACCATCACTTTATGATGAAGTAGTATTCAAGGCCCTGGATTTTGTGGTGAGTGAAGCAAAGAAATACAGAATCAGACTCATATTATCATTGGTTAACAATTGGGAGGCATATGGTGGCAAAGCACAGTATGTCAAGTGGGGCAATGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTTTTCTCACATCCAACTCTCAGAGGCTACTACAAGGACCATGTCAAGACTGTGCTCAATAGAGTTAACACACTCACAAATATCACTTATAAGGAAGATCCAACAATTTTTGCTTGGGAGCTAATGAATGAGCCTCGATGCACCTCTGACTCCTCTGGTGATACGTTACAGGAATGGATAAAAGAGATGGCATTCTATGTTAAGAGCGTTGATCCGAAACACCTACTGGAGATTGGCCTAGAAGGATTTTATGGCCCCTCAACACCTCAGAGATTTCAGTTCAACCCAAATTCATATGCTCAACAGGTTGGAACTGATTTTATCAGAAACCACCAGGTTCTAGGTGTCGACTTTGCTTCTGCTCATATATATCCAGACTCTTGGATTTCACAATCAGTTGCTGATAGCCATATCCCATTTGTGAAGTCTTGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCGGTTGTTTTTGGTGAGTTTGGTGTATCTGCAAAAGATCCTGGTTATAATTCAACATATAGAGATACATTTATAAATACTGTGTACAAGACAATTCTAAACTCTACAAAGAAAGGAGGTAGTGGGGCTGGAAGCCTTTTGTGGCAGTTCTTTCCTGATGGAACAGATTACATGGATGATGGTTATGCAATTGTTCTCTCAAAAGCTCCTTCTATTTCAAGCATGATATCCCTTCAATCCACAAGGCTTGCCCTATTCAACTCCCTCTGCTCTGAGAGATGCCACTGGGGTTGTAAGAAGAAAAAGGTGTTGCAAAATGTAGTCTACGAGGATGAGGAGTAG

Protein sequence

>Msa1227760

MEAIFKRFQLCVISFLIFLTILTQTFSSTAFDDTEYEDWESNIHIPNSILTYGSEMEEAEWQMVQKKGNQFAVNDQPFYVNGFNTYWLMVFAADESTRGRVTQVFKHAFSVGMTVCRTWAFNDGQWRALQKSPSLYDEVVFKALDFVVSEAKKYRIRLILSLVNNWEAYGGKAQYVKWGNAAGLNLTSDDDFFSHPTLRGYYKDHVKTVLNRVNTLTNITYKEDPTIFAWELMNEPRCTSDSSGDTLQEWIKEMAFYVKSVDPKHLLEIGLEGFYGPSTPQRFQFNPNSYAQQVGTDFIRNHQVLGVDFASAHIYPDSWISQSVADSHIPFVKSWMEAHIEDAEKYLGMPVVFGEFGVSAKDPGYNSTYRDTFINTVYKTILNSTKKGGSGAGSLLWQFFPDGTDYMDDGYAIVLSKAPSISSMISLQSTRLALFNSLCSERCHWGCKKKKVLQNVVYEDEE*