Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1312140 | sp|Q9LIK7|ACA13_ARATH | 67.583 | 1018 | 301 | 11 | 12 | 1018 | 17 | 1016 | 0.0 | 1313 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1312140 | A0A072U776 | 91.266 | 1019 | 87 | 2 | 1 | 1017 | 1 | 1019 | 0.0 | 1885 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0043850 | Msa1312140 | 0.803936 | 2.748138e-49 | -8.615850e-47 |
Msa0137980 | Msa1312140 | 0.803256 | 3.801901e-49 | -8.615850e-47 |
Msa1231360 | Msa1312140 | 0.825993 | 3.460887e-54 | -8.615850e-47 |
Msa1312140 | Msa1379020 | 0.800161 | 1.640902e-48 | -8.615850e-47 |
Msa1312140 | Msa1407880 | 0.813351 | 2.674636e-51 | -8.615850e-47 |
Msa1031460 | Msa1312140 | 0.828860 | 7.109840e-55 | -8.615850e-47 |
Msa1070540 | Msa1312140 | 0.842474 | 2.529662e-58 | -8.615850e-47 |
Msa1101240 | Msa1312140 | 0.840251 | 9.728904e-58 | -8.615850e-47 |
Msa1180930 | Msa1312140 | 0.812838 | 3.465279e-51 | -8.615850e-47 |
Msa0843700 | Msa1312140 | 0.807517 | 4.862113e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1312140 | MtrunA17_Chr6g0456201 | 91.266 | 1019 | 87 | 2 | 1 | 1017 | 1 | 1019 | 0.0 | 1885 |
Msa1312140 | MtrunA17_Chr7g0260401 | 68.096 | 956 | 289 | 8 | 71 | 1017 | 104 | 1052 | 0.0 | 1256 |
Msa1312140 | MtrunA17_Chr8g0340261 | 93.892 | 573 | 18 | 1 | 447 | 1019 | 1 | 556 | 0.0 | 1096 |
Msa1312140 | MtrunA17_Chr2g0298871 | 55.843 | 967 | 403 | 9 | 52 | 1009 | 123 | 1074 | 0.0 | 1020 |
Msa1312140 | MtrunA17_Chr4g0002331 | 56.231 | 971 | 397 | 12 | 50 | 1009 | 133 | 1086 | 0.0 | 1012 |
Msa1312140 | MtrunA17_Chr1g0173111 | 48.133 | 964 | 455 | 16 | 55 | 1004 | 79 | 1011 | 0.0 | 863 |
Msa1312140 | MtrunA17_Chr8g0340271 | 92.998 | 457 | 26 | 1 | 1 | 457 | 1 | 451 | 0.0 | 857 |
Msa1312140 | MtrunA17_Chr8g0382071 | 47.479 | 952 | 459 | 15 | 69 | 1007 | 94 | 1017 | 0.0 | 845 |
Msa1312140 | MtrunA17_Chr4g0054021 | 48.330 | 958 | 460 | 14 | 56 | 1004 | 6 | 937 | 0.0 | 816 |
Msa1312140 | MtrunA17_Chr5g0401211 | 47.331 | 974 | 472 | 15 | 41 | 1004 | 72 | 1014 | 0.0 | 805 |
Msa1312140 | MtrunA17_Chr3g0134771 | 46.410 | 961 | 478 | 12 | 55 | 1004 | 82 | 1016 | 0.0 | 796 |
Msa1312140 | MtrunA17_Chr4g0020551 | 46.400 | 875 | 426 | 14 | 69 | 928 | 27 | 873 | 0.0 | 748 |
Msa1312140 | MtrunA17_Chr8g0355421 | 41.474 | 950 | 511 | 16 | 69 | 1004 | 87 | 1005 | 0.0 | 689 |
Msa1312140 | MtrunA17_Chr5g0447521 | 33.257 | 875 | 526 | 16 | 151 | 1002 | 165 | 1004 | 2.75e-138 | 442 |
Msa1312140 | MtrunA17_Chr4g0005551 | 30.572 | 1014 | 627 | 22 | 19 | 1004 | 3 | 967 | 1.04e-137 | 439 |
Msa1312140 | MtrunA17_Chr2g0334231 | 51.095 | 411 | 189 | 3 | 40 | 450 | 106 | 504 | 1.12e-123 | 387 |
Msa1312140 | MtrunA17_Chr7g0263361 | 32.836 | 871 | 453 | 27 | 101 | 881 | 38 | 866 | 2.38e-107 | 359 |
Msa1312140 | MtrunA17_Chr8g0346461 | 31.603 | 867 | 479 | 23 | 105 | 885 | 30 | 868 | 4.90e-95 | 325 |
Msa1312140 | MtrunA17_Chr3g0134951 | 29.804 | 869 | 499 | 19 | 95 | 890 | 3 | 833 | 2.91e-89 | 308 |
Msa1312140 | MtrunA17_Chr2g0334221 | 51.839 | 299 | 137 | 6 | 468 | 764 | 43 | 336 | 2.25e-83 | 274 |
Msa1312140 | MtrunA17_Chr2g0334201 | 55.621 | 169 | 70 | 1 | 846 | 1009 | 1 | 169 | 1.53e-61 | 207 |
Msa1312140 | MtrunA17_Chr4g0065481 | 23.188 | 759 | 468 | 23 | 71 | 816 | 1 | 657 | 8.19e-47 | 182 |
Msa1312140 | MtrunA17_Chr4g0072131 | 23.109 | 727 | 464 | 19 | 94 | 816 | 24 | 659 | 3.42e-46 | 180 |
Msa1312140 | MtrunA17_Chr2g0298031 | 23.561 | 747 | 469 | 18 | 77 | 816 | 11 | 662 | 9.13e-46 | 178 |
Msa1312140 | MtrunA17_Chr8g0381711 | 24.571 | 757 | 469 | 20 | 153 | 881 | 69 | 751 | 9.66e-46 | 178 |
Msa1312140 | MtrunA17_Chr2g0304941 | 22.559 | 758 | 471 | 23 | 80 | 824 | 10 | 664 | 1.51e-44 | 174 |
Msa1312140 | MtrunA17_Chr3g0138931 | 24.958 | 601 | 369 | 15 | 218 | 816 | 136 | 656 | 3.18e-43 | 171 |
Msa1312140 | MtrunA17_Chr2g0333721 | 24.595 | 618 | 365 | 17 | 218 | 824 | 134 | 661 | 3.33e-43 | 170 |
Msa1312140 | MtrunA17_Chr1g0148031 | 23.286 | 700 | 446 | 18 | 122 | 816 | 43 | 656 | 4.36e-43 | 170 |
Msa1312140 | MtrunA17_Chr6g0452721 | 23.548 | 620 | 369 | 17 | 218 | 824 | 138 | 665 | 2.09e-42 | 168 |
Msa1312140 | MtrunA17_Chr8g0365021 | 24.086 | 602 | 373 | 15 | 218 | 816 | 206 | 726 | 7.43e-42 | 166 |
Msa1312140 | MtrunA17_Chr4g0059961 | 23.548 | 620 | 369 | 17 | 218 | 824 | 140 | 667 | 1.11e-41 | 166 |
Msa1312140 | MtrunA17_Chr1g0147981 | 22.535 | 710 | 439 | 18 | 122 | 816 | 60 | 673 | 3.43e-41 | 164 |
Msa1312140 | MtrunA17_Chr8g0335291 | 22.900 | 607 | 388 | 13 | 218 | 824 | 144 | 670 | 7.01e-38 | 154 |
Msa1312140 | MtrunA17_Chr7g0276551 | 24.201 | 657 | 388 | 21 | 385 | 1019 | 42 | 610 | 7.16e-34 | 139 |
Msa1312140 | MtrunA17_Chr5g0421231 | 76.250 | 80 | 19 | 0 | 520 | 599 | 279 | 358 | 1.47e-31 | 134 |
Msa1312140 | MtrunA17_Chr3g0131151 | 23.719 | 683 | 388 | 22 | 174 | 779 | 217 | 843 | 1.25e-22 | 105 |
Msa1312140 | MtrunA17_Chr2g0297051 | 31.188 | 202 | 105 | 4 | 620 | 821 | 804 | 971 | 1.01e-19 | 95.5 |
Msa1312140 | MtrunA17_Chr8g0374331 | 29.508 | 183 | 97 | 3 | 639 | 821 | 42 | 192 | 7.50e-19 | 87.4 |
Msa1312140 | MtrunA17_Chr4g0052521 | 29.798 | 198 | 106 | 4 | 624 | 821 | 775 | 939 | 1.27e-18 | 91.7 |
Msa1312140 | MtrunA17_Chr8g0374391 | 29.508 | 183 | 97 | 3 | 639 | 821 | 35 | 185 | 2.73e-18 | 85.5 |
Msa1312140 | MtrunA17_Chr5g0397621 | 31.694 | 183 | 89 | 5 | 619 | 798 | 671 | 820 | 8.22e-17 | 85.9 |
Msa1312140 | MtrunA17_Chr8g0339181 | 30.332 | 211 | 107 | 5 | 630 | 839 | 751 | 922 | 3.44e-16 | 84.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1312140 | AT3G22910.1 | 67.583 | 1018 | 301 | 11 | 12 | 1018 | 17 | 1016 | 0.0 | 1313 |
Msa1312140 | AT3G63380.1 | 66.004 | 1006 | 305 | 10 | 28 | 1013 | 27 | 1015 | 0.0 | 1276 |
Msa1312140 | AT4G29900.1 | 56.531 | 957 | 400 | 8 | 69 | 1017 | 114 | 1062 | 0.0 | 1058 |
Msa1312140 | AT4G29900.2 | 56.531 | 957 | 400 | 8 | 69 | 1017 | 114 | 1062 | 0.0 | 1058 |
Msa1312140 | AT5G57110.1 | 56.029 | 962 | 405 | 7 | 64 | 1017 | 109 | 1060 | 0.0 | 1052 |
Msa1312140 | AT5G57110.3 | 56.029 | 962 | 405 | 7 | 64 | 1017 | 109 | 1060 | 0.0 | 1052 |
Msa1312140 | AT5G57110.2 | 56.029 | 962 | 405 | 7 | 64 | 1017 | 109 | 1060 | 0.0 | 1052 |
Msa1312140 | AT3G21180.1 | 55.959 | 965 | 404 | 11 | 65 | 1017 | 124 | 1079 | 0.0 | 1016 |
Msa1312140 | AT3G57330.1 | 47.594 | 956 | 464 | 12 | 56 | 1004 | 80 | 1005 | 0.0 | 862 |
Msa1312140 | AT3G57330.2 | 47.594 | 956 | 464 | 12 | 56 | 1004 | 25 | 950 | 0.0 | 860 |
Msa1312140 | AT2G41560.1 | 44.466 | 1012 | 515 | 15 | 6 | 1007 | 37 | 1011 | 0.0 | 838 |
Msa1312140 | AT2G41560.2 | 46.645 | 939 | 461 | 14 | 79 | 1007 | 1 | 909 | 0.0 | 825 |
Msa1312140 | AT2G41560.3 | 46.645 | 939 | 461 | 14 | 79 | 1007 | 1 | 909 | 0.0 | 825 |
Msa1312140 | AT2G41560.4 | 46.645 | 939 | 461 | 14 | 79 | 1007 | 1 | 909 | 0.0 | 825 |
Msa1312140 | AT1G27770.4 | 46.674 | 962 | 475 | 14 | 55 | 1004 | 82 | 1017 | 0.0 | 811 |
Msa1312140 | AT1G27770.1 | 46.674 | 962 | 475 | 14 | 55 | 1004 | 82 | 1017 | 0.0 | 811 |
Msa1312140 | AT1G27770.3 | 46.820 | 959 | 472 | 14 | 58 | 1004 | 22 | 954 | 0.0 | 811 |
Msa1312140 | AT4G37640.1 | 46.930 | 961 | 474 | 13 | 55 | 1004 | 79 | 1014 | 0.0 | 787 |
Msa1312140 | AT2G22950.1 | 47.034 | 961 | 474 | 13 | 55 | 1004 | 79 | 1015 | 0.0 | 781 |
Msa1312140 | AT5G53010.1 | 37.939 | 912 | 483 | 20 | 69 | 951 | 140 | 997 | 3.85e-178 | 547 |
Msa1312140 | AT5G53010.2 | 37.213 | 653 | 389 | 12 | 62 | 712 | 133 | 766 | 1.89e-124 | 398 |
Msa1312140 | AT1G27770.2 | 40.448 | 581 | 316 | 10 | 55 | 621 | 82 | 646 | 5.05e-119 | 388 |
Msa1312140 | AT1G27770.2 | 57.929 | 309 | 125 | 2 | 701 | 1004 | 635 | 943 | 1.71e-109 | 362 |
Msa1312140 | AT1G07670.2 | 33.413 | 835 | 465 | 24 | 122 | 885 | 54 | 868 | 1.11e-108 | 363 |
Msa1312140 | AT1G07670.1 | 33.413 | 835 | 465 | 24 | 122 | 885 | 54 | 868 | 1.11e-108 | 363 |
Msa1312140 | AT1G07810.1 | 33.413 | 835 | 465 | 24 | 122 | 885 | 54 | 868 | 2.95e-108 | 362 |
Msa1312140 | AT4G00900.2 | 33.411 | 862 | 458 | 27 | 94 | 868 | 14 | 846 | 3.83e-102 | 345 |
Msa1312140 | AT4G00900.1 | 33.411 | 862 | 458 | 27 | 94 | 868 | 14 | 846 | 3.83e-102 | 345 |
Msa1312140 | AT1G10130.1 | 28.807 | 972 | 554 | 27 | 122 | 995 | 32 | 963 | 7.94e-90 | 310 |
Msa1312140 | AT2G24520.2 | 25.632 | 593 | 359 | 14 | 225 | 816 | 188 | 699 | 3.77e-45 | 177 |
Msa1312140 | AT2G24520.3 | 25.632 | 593 | 359 | 14 | 225 | 816 | 125 | 636 | 5.17e-45 | 176 |
Msa1312140 | AT2G24520.1 | 25.632 | 593 | 359 | 14 | 225 | 816 | 125 | 636 | 5.17e-45 | 176 |
Msa1312140 | AT1G80660.2 | 24.149 | 617 | 369 | 18 | 218 | 824 | 10 | 537 | 8.05e-45 | 175 |
Msa1312140 | AT1G80660.3 | 24.149 | 617 | 369 | 18 | 218 | 824 | 139 | 666 | 1.22e-44 | 175 |
Msa1312140 | AT1G80660.4 | 24.149 | 617 | 369 | 18 | 218 | 824 | 139 | 666 | 1.29e-44 | 175 |
Msa1312140 | AT1G80660.1 | 24.149 | 617 | 369 | 18 | 218 | 824 | 139 | 666 | 1.36e-44 | 175 |
Msa1312140 | AT3G60330.4 | 23.284 | 743 | 455 | 24 | 94 | 824 | 22 | 661 | 1.77e-44 | 175 |
Msa1312140 | AT3G60330.3 | 23.284 | 743 | 455 | 24 | 94 | 824 | 22 | 661 | 1.77e-44 | 175 |
Msa1312140 | AT3G42640.1 | 23.421 | 760 | 466 | 25 | 78 | 824 | 8 | 664 | 2.83e-44 | 174 |
Msa1312140 | AT3G60330.2 | 23.149 | 743 | 456 | 24 | 94 | 824 | 22 | 661 | 3.86e-44 | 174 |
Msa1312140 | AT3G60330.1 | 23.149 | 743 | 456 | 24 | 94 | 824 | 22 | 661 | 3.86e-44 | 174 |
Msa1312140 | AT2G07560.1 | 23.312 | 785 | 481 | 24 | 78 | 847 | 8 | 686 | 5.31e-44 | 173 |
Msa1312140 | AT1G17260.1 | 23.974 | 609 | 364 | 13 | 218 | 816 | 142 | 661 | 6.54e-42 | 167 |
Msa1312140 | AT3G47950.1 | 23.586 | 619 | 370 | 18 | 218 | 824 | 142 | 669 | 8.32e-42 | 166 |
Msa1312140 | AT3G47950.2 | 23.586 | 619 | 370 | 18 | 218 | 824 | 142 | 669 | 8.32e-42 | 166 |
Msa1312140 | AT4G30190.1 | 24.224 | 644 | 381 | 17 | 218 | 847 | 134 | 684 | 9.82e-42 | 166 |
Msa1312140 | AT2G18960.3 | 24.224 | 644 | 381 | 17 | 218 | 847 | 70 | 620 | 2.84e-41 | 164 |
Msa1312140 | AT2G18960.2 | 24.224 | 644 | 381 | 17 | 218 | 847 | 70 | 620 | 2.84e-41 | 164 |
Msa1312140 | AT2G18960.1 | 24.224 | 644 | 381 | 17 | 218 | 847 | 134 | 684 | 3.75e-41 | 164 |
Msa1312140 | AT5G62670.1 | 23.290 | 614 | 378 | 16 | 218 | 824 | 138 | 665 | 4.48e-41 | 164 |
Msa1312140 | AT5G57350.4 | 24.092 | 606 | 368 | 16 | 218 | 816 | 135 | 655 | 1.90e-40 | 162 |
Msa1312140 | AT5G57350.2 | 24.092 | 606 | 368 | 16 | 218 | 816 | 135 | 655 | 1.90e-40 | 162 |
Msa1312140 | AT5G57350.1 | 24.092 | 606 | 368 | 16 | 218 | 816 | 135 | 655 | 1.90e-40 | 162 |
Msa1312140 | AT4G30190.2 | 23.423 | 666 | 392 | 19 | 218 | 847 | 134 | 717 | 1.02e-38 | 157 |
Msa1312140 | AT2G24520.4 | 24.306 | 432 | 276 | 8 | 385 | 816 | 13 | 393 | 9.39e-29 | 124 |
Msa1312140 | AT5G57350.3 | 24.194 | 434 | 274 | 10 | 385 | 816 | 13 | 393 | 3.03e-28 | 122 |
Msa1312140 | AT5G23630.1 | 23.433 | 670 | 379 | 22 | 174 | 766 | 217 | 829 | 3.64e-22 | 103 |
Msa1312140 | AT1G63440.1 | 31.148 | 183 | 94 | 2 | 639 | 821 | 787 | 937 | 2.43e-19 | 94.7 |
Msa1312140 | AT5G44790.1 | 32.512 | 203 | 103 | 5 | 619 | 821 | 780 | 948 | 6.79e-19 | 93.2 |
Msa1312140 | AT4G11730.1 | 23.235 | 340 | 215 | 13 | 122 | 454 | 45 | 345 | 2.20e-17 | 88.2 |
Msa1312140 | AT4G30110.1 | 27.830 | 212 | 113 | 4 | 636 | 847 | 508 | 679 | 3.48e-15 | 81.3 |
Msa1312140 | AT4G30110.2 | 27.830 | 212 | 113 | 4 | 636 | 847 | 508 | 679 | 3.48e-15 | 81.3 |
Find 163 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAACAGCAGTTCAATTATTA+TGG | 0.176402 | 8_4:-9057829 | Msa1312140:CDS |
TCATGACAATCTATTGTTCT+AGG | 0.188399 | 8_4:-9060515 | Msa1312140:CDS |
TTGTTGACTCTTCAGTTTAA+AGG | 0.188937 | 8_4:-9057647 | Msa1312140:CDS |
TGAGTTTAATGCAAGGAAAT+TGG | 0.225227 | 8_4:-9057546 | Msa1312140:CDS |
TCTTATATTGTTTGTGTTGT+TGG | 0.228608 | 8_4:+9060551 | None:intergenic |
ATTATGGGTGAATTTGATTA+TGG | 0.241738 | 8_4:-9057813 | Msa1312140:CDS |
CTATAGTAACAGTTATAAAT+TGG | 0.242031 | 8_4:-9057964 | Msa1312140:CDS |
TTTAACAATTCTTATTCTTT+TGG | 0.264806 | 8_4:-9060166 | Msa1312140:CDS |
ACTTTCTGCATGTGAAACTA+TGG | 0.271109 | 8_4:-9059341 | Msa1312140:CDS |
AATGCTATCTTGGGCTGTTT+TGG | 0.282495 | 8_4:-9058949 | Msa1312140:CDS |
TTTGGAATTGAAAATGGATA+TGG | 0.303373 | 8_4:-9058931 | Msa1312140:CDS |
CAATGATATTCAAATTGATT+TGG | 0.308945 | 8_4:-9059980 | Msa1312140:CDS |
TATCAAATATTGATACCTTT+TGG | 0.309835 | 8_4:+9059941 | None:intergenic |
AAATGAAGGTGACAAAGTTT+TGG | 0.310296 | 8_4:-9059136 | Msa1312140:CDS |
GTTATCAGTCTTCGTGTTCC+CGG | 0.311426 | 8_4:+9059549 | None:intergenic |
GAGTCAACAAAATTACTATT+TGG | 0.316887 | 8_4:+9057660 | None:intergenic |
TTCGTCAATGTCGTTGCTTA+TGG | 0.324687 | 8_4:+9059678 | None:intergenic |
CTTTCCAATGTGCAATAGTT+TGG | 0.325768 | 8_4:+9058814 | None:intergenic |
GCTGCTGTTTCTTGGCCAAT+TGG | 0.334729 | 8_4:-9057365 | Msa1312140:CDS |
GCTACTCTTTCACTTGGCTT+TGG | 0.339406 | 8_4:-9060138 | Msa1312140:CDS |
GTTAGGACTTGTCGGCATTA+AGG | 0.342087 | 8_4:-9058565 | Msa1312140:CDS |
CTTAAAACTAACGTTGAGTT+TGG | 0.343232 | 8_4:-9060312 | Msa1312140:CDS |
GACAATGGTTTAACATTGTT+AGG | 0.351609 | 8_4:-9058582 | Msa1312140:CDS |
GTTTCATTTGTGTCCTGATT+TGG | 0.353718 | 8_4:+9058262 | None:intergenic |
TATAGTAACAGTTATAAATT+GGG | 0.361053 | 8_4:-9057963 | Msa1312140:CDS |
CACATAATGTTAGTTATAAG+AGG | 0.361954 | 8_4:+9057710 | None:intergenic |
CTAATACTGAGAGGTTGAAT+TGG | 0.365165 | 8_4:-9057415 | Msa1312140:CDS |
GTTCAATGCTTAAAACAAAA+AGG | 0.379356 | 8_4:-9058130 | Msa1312140:CDS |
GCATTGAAAGAAGCTGATAT+TGG | 0.384204 | 8_4:-9058064 | Msa1312140:CDS |
CTCAATCGGAAAGGTTGGTT+TGG | 0.386409 | 8_4:-9059617 | Msa1312140:CDS |
GATGTGATGAATGCAGTTAT+TGG | 0.388736 | 8_4:-9059487 | Msa1312140:CDS |
AATTTGATTATGGATACATT+AGG | 0.389466 | 8_4:-9057803 | Msa1312140:CDS |
TTGTTTGTGTTGTTGGTGTT+TGG | 0.395216 | 8_4:+9060558 | None:intergenic |
AATAATTGAACTGCTGTTAG+TGG | 0.396163 | 8_4:+9057833 | None:intergenic |
TCAATTCGACAACAAGTGTT+TGG | 0.401723 | 8_4:-9060255 | Msa1312140:CDS |
AAAACCAACTAAGGATTTGA+TGG | 0.402456 | 8_4:-9057759 | Msa1312140:CDS |
GATGTTGTTTGTTTGAAGAT+TGG | 0.403237 | 8_4:-9059907 | Msa1312140:CDS |
GCCGATGGATTGTTCCTAGA+TGG | 0.404691 | 8_4:-9059871 | Msa1312140:CDS |
CGGAATTCTTCAACCAAATC+AGG | 0.406571 | 8_4:-9058275 | Msa1312140:CDS |
GGTGTTCACAAATTGAAATC+AGG | 0.407128 | 8_4:-9059017 | Msa1312140:CDS |
TTGATCAACTGAAGAACAAA+TGG | 0.407577 | 8_4:+9059068 | None:intergenic |
AGAGGCTTTGTTCTACCAAC+AGG | 0.415046 | 8_4:+9057728 | None:intergenic |
TTATCCATCAAATCCTTAGT+TGG | 0.417137 | 8_4:+9057755 | None:intergenic |
GTTCTTCAGTTGATCAAAGA+AGG | 0.419515 | 8_4:-9059062 | Msa1312140:CDS |
TGCATCATTTGTTCCATCTC+CGG | 0.420701 | 8_4:+9058090 | None:intergenic |
AACAGCAGTTCAATTATTAT+GGG | 0.424661 | 8_4:-9057828 | Msa1312140:CDS |
CATGACAATCTATTGTTCTA+GGG | 0.426996 | 8_4:-9060514 | Msa1312140:CDS |
AGCTGATATTGGACTCTCAA+TGG | 0.430102 | 8_4:-9058053 | Msa1312140:CDS |
CAAACCAACCTTTCCGATTG+AGG | 0.434963 | 8_4:+9059618 | None:intergenic |
GTGAATGTCAAAATGATTAC+AGG | 0.438056 | 8_4:-9058489 | Msa1312140:intron |
AGTGTCAATGTCACAGCTAA+TGG | 0.439120 | 8_4:+9059412 | None:intergenic |
AGAGGTTGAATTGGAGAGAG+TGG | 0.441904 | 8_4:-9057406 | Msa1312140:CDS |
ACCATTAGAAGTTTATCAAA+AGG | 0.442657 | 8_4:+9058151 | None:intergenic |
CGAAAGCATTATTCAAGGTA+TGG | 0.444612 | 8_4:-9058700 | Msa1312140:CDS |
TTTGTCGCGGCGGTTTCGGC+AGG | 0.445086 | 8_4:-9057863 | Msa1312140:CDS |
TACGAGAGTTTCTTGATCAA+TGG | 0.446567 | 8_4:+9060404 | None:intergenic |
TCAATATTTGATATTGTTGT+TGG | 0.451599 | 8_4:-9059931 | Msa1312140:CDS |
CAGAAACATGGTGGAGTTGA+AGG | 0.451952 | 8_4:-9060348 | Msa1312140:CDS |
GTCGTTGTTGCTATCCCTGA+GGG | 0.454074 | 8_4:-9059439 | Msa1312140:CDS |
AACTTCACAACAAAACCAAT+TGG | 0.455892 | 8_4:+9057350 | None:intergenic |
GGACTCTCAATGGGAATTCA+AGG | 0.457786 | 8_4:-9058043 | Msa1312140:CDS |
GAGAAGAAGAATGTGTTTGA+AGG | 0.463945 | 8_4:-9057524 | Msa1312140:CDS |
AGAGAGTGGATTGTTTGTAT+TGG | 0.469398 | 8_4:-9057392 | Msa1312140:CDS |
GGAGTTGCTCTCAACACAAC+TGG | 0.473577 | 8_4:-9059041 | Msa1312140:CDS |
GGTCACGTAGTTGCTGTAAC+CGG | 0.473722 | 8_4:-9058109 | Msa1312140:CDS |
AAATCAACCACGGTGAAAGA+TGG | 0.474976 | 8_4:+9060447 | None:intergenic |
TCAAAATACCACGATGGTTG+TGG | 0.475860 | 8_4:-9058762 | Msa1312140:CDS |
TATGGATACATTAGGTGCAT+TGG | 0.476382 | 8_4:-9057795 | Msa1312140:CDS |
AAATTCGAAAGCATTATTCA+AGG | 0.477862 | 8_4:-9058705 | Msa1312140:CDS |
ACAGCTAATGGCAAACCCTC+AGG | 0.478867 | 8_4:+9059424 | None:intergenic |
TCAACCGCGGTCTTCACTCC+TGG | 0.480063 | 8_4:+9058531 | None:intergenic |
GACGAAGAGCTTGGAGTTGA+AGG | 0.481741 | 8_4:-9058630 | Msa1312140:CDS |
GCTGATATTGGACTCTCAAT+GGG | 0.482404 | 8_4:-9058052 | Msa1312140:CDS |
GAATATGCACCAACTTCCAT+TGG | 0.484480 | 8_4:+9059101 | None:intergenic |
ATATCAGCTTCTTTCAATGC+TGG | 0.486714 | 8_4:+9058067 | None:intergenic |
AATCAACCACGGTGAAAGAT+GGG | 0.488185 | 8_4:+9060448 | None:intergenic |
TTAACATTGTTAGGACTTGT+CGG | 0.492019 | 8_4:-9058573 | Msa1312140:CDS |
CTGTTGATTCGATATTTCAC+CGG | 0.495373 | 8_4:-9059568 | Msa1312140:CDS |
GTTTGTGCTACTCTTTCACT+TGG | 0.496780 | 8_4:-9060144 | Msa1312140:CDS |
GGTTTAGAACCAATGGAAGT+TGG | 0.498433 | 8_4:-9059110 | Msa1312140:CDS |
CTCTCAACGAATGTCCATCT+AGG | 0.502870 | 8_4:+9059857 | None:intergenic |
GTTGATGAATCGAGCATGAC+CGG | 0.505360 | 8_4:-9059835 | Msa1312140:CDS |
CGGTTGGTATGAACACAACA+TGG | 0.507879 | 8_4:-9059717 | Msa1312140:CDS |
AATAAACTAACATCCTCAAT+CGG | 0.510354 | 8_4:-9059631 | Msa1312140:CDS |
GTCAAAGAAGGTTGGTATGA+TGG | 0.512824 | 8_4:-9060099 | Msa1312140:CDS |
AAGAAACTCCTTTGCAAACA+AGG | 0.516856 | 8_4:-9059657 | Msa1312140:CDS |
GGGAATTGTTGGTGTGACAT+TGG | 0.521518 | 8_4:-9057477 | Msa1312140:CDS |
GTGGTTCAAGTTTGTGAACA+AGG | 0.521853 | 8_4:+9060602 | None:intergenic |
AGAACAATAGATTGTCATGA+AGG | 0.524303 | 8_4:+9060518 | None:intergenic |
CTCTTATAACTAACATTATG+TGG | 0.531696 | 8_4:-9057709 | Msa1312140:CDS |
CAAATTGATTTGGTTCGTAG+TGG | 0.532205 | 8_4:-9059970 | Msa1312140:CDS |
AGTAATGGTTTATCTGAGAC+TGG | 0.534339 | 8_4:+9057323 | None:intergenic |
AAAGTTACCGACGAAGAGCT+TGG | 0.534806 | 8_4:-9058639 | Msa1312140:CDS |
GTCTTCACTCCTGGACGACA+TGG | 0.535794 | 8_4:+9058540 | None:intergenic |
AACTCAAAGAAGAAAAGAAG+TGG | 0.537966 | 8_4:-9058864 | Msa1312140:CDS |
AAAGAGCATGGAGTCAAAGA+AGG | 0.538580 | 8_4:-9060111 | Msa1312140:CDS |
AGAAGAAGAATGTGTTTGAA+GGG | 0.540107 | 8_4:-9057523 | Msa1312140:CDS |
AAAATGCTCGTTACATCGGT+TGG | 0.541310 | 8_4:-9059733 | Msa1312140:CDS |
ATTGGTGCTTCAAGTTGTGA+TGG | 0.541508 | 8_4:-9057459 | Msa1312140:CDS |
GTAGTTGCTGTAACCGGAGA+TGG | 0.545548 | 8_4:-9058103 | Msa1312140:CDS |
CTTTCTGCATGTGAAACTAT+GGG | 0.545575 | 8_4:-9059340 | Msa1312140:CDS |
CTTCACACACGAAGAGAGGT+TGG | 0.545743 | 8_4:-9058212 | Msa1312140:CDS |
GGCTTTGGAATCAAAGAGCA+TGG | 0.545764 | 8_4:-9060123 | Msa1312140:CDS |
TTGGCTTGGTTTAGAACCAA+TGG | 0.546364 | 8_4:-9059117 | Msa1312140:CDS |
ACAACACAAACAATATAAGA+TGG | 0.547366 | 8_4:-9060548 | Msa1312140:CDS |
ACATCCTCAATCGGAAAGGT+TGG | 0.547400 | 8_4:-9059622 | Msa1312140:CDS |
ACAAATGAAACAGTGGTTGA+AGG | 0.547600 | 8_4:-9058250 | Msa1312140:CDS |
ACTCACTTTGAATCAAATGA+AGG | 0.553950 | 8_4:-9059150 | Msa1312140:CDS |
TTATTCAACCTTGTTTGCAA+AGG | 0.556386 | 8_4:+9059649 | None:intergenic |
AAATTGATTTGGTTCGTAGT+GGG | 0.562240 | 8_4:-9059969 | Msa1312140:CDS |
CTCTACATGATCGCTCTCAC+CGG | 0.562804 | 8_4:+9059816 | None:intergenic |
TCCGGAACAAAAGTTGCCGA+TGG | 0.563913 | 8_4:-9059763 | Msa1312140:CDS |
TTGGAAAGGAGCAGCAGAGA+TGG | 0.565912 | 8_4:-9058799 | Msa1312140:CDS |
ATTAAGGATCCATGTCGTCC+AGG | 0.566040 | 8_4:-9058549 | Msa1312140:CDS |
AGCATGGAGTCAAAGAAGGT+TGG | 0.566589 | 8_4:-9060107 | Msa1312140:CDS |
TCTAGGAACAATCCATCGGC+TGG | 0.567484 | 8_4:+9059874 | None:intergenic |
AGTTGAGAAAATCTCTGTGA+TGG | 0.570853 | 8_4:-9058185 | Msa1312140:CDS |
TGTTGATTCGATATTTCACC+GGG | 0.582880 | 8_4:-9059567 | Msa1312140:CDS |
AAAGAAGGTTGGTATGATGG+TGG | 0.584489 | 8_4:-9060096 | Msa1312140:CDS |
GTTGAAGCTTGCCAACATGC+TGG | 0.584909 | 8_4:-9058513 | Msa1312140:CDS |
TGTGAACAAGGGCATTGACA+TGG | 0.585662 | 8_4:+9060614 | None:intergenic |
GCAACTTCACACACGAAGAG+AGG | 0.586009 | 8_4:-9058216 | Msa1312140:CDS |
CAAACTATTGCACATTGGAA+AGG | 0.587059 | 8_4:-9058813 | Msa1312140:CDS |
TGATCAATGGTAAAAGAATG+AGG | 0.588924 | 8_4:+9060417 | None:intergenic |
ACTATTTGCACTGATAAGAC+AGG | 0.589952 | 8_4:-9059307 | Msa1312140:intron |
GGGAACACGAAGACTGATAA+CGG | 0.595313 | 8_4:-9059547 | Msa1312140:CDS |
TGACATTCACACCAGCATGT+TGG | 0.604962 | 8_4:+9058502 | None:intergenic |
TTCAACTCCAAGCTCTTCGT+CGG | 0.604998 | 8_4:+9058632 | None:intergenic |
TGGTTCAAGTTTGTGAACAA+GGG | 0.619115 | 8_4:+9060603 | None:intergenic |
CAGCTAATGGCAAACCCTCA+GGG | 0.620845 | 8_4:+9059425 | None:intergenic |
TGAAGGAGAGACAAACAAGA+TGG | 0.622434 | 8_4:-9058613 | Msa1312140:CDS |
ACTAACATCCTCAATCGGAA+AGG | 0.622770 | 8_4:-9059626 | Msa1312140:CDS |
TCCATCTAGGAACAATCCAT+CGG | 0.623925 | 8_4:+9059870 | None:intergenic |
TGTTTAATGAGTTTAATGCA+AGG | 0.630387 | 8_4:-9057553 | Msa1312140:CDS |
TGTCGTTGTTGCTATCCCTG+AGG | 0.631694 | 8_4:-9059440 | Msa1312140:CDS |
GGTGATCAAGTACCAGCCGA+TGG | 0.639660 | 8_4:-9059886 | Msa1312140:CDS |
GGTTGGTATGAACACAACAT+GGG | 0.640345 | 8_4:-9059716 | Msa1312140:CDS |
ATAACCAAACTATTGCACAT+TGG | 0.646246 | 8_4:-9058818 | Msa1312140:CDS |
ATAGTAACAGTTATAAATTG+GGG | 0.650143 | 8_4:-9057962 | Msa1312140:CDS |
AAGATGGTGGTAAAAGACAA+TGG | 0.652183 | 8_4:-9058597 | Msa1312140:CDS |
TCAAAATTCCACAACCATCG+TGG | 0.657262 | 8_4:+9058754 | None:intergenic |
AATGATGACTGATCAAGCAA+TGG | 0.658307 | 8_4:-9059371 | Msa1312140:CDS |
AGAAGTTTGCTAATACTGAG+AGG | 0.658673 | 8_4:-9057424 | Msa1312140:CDS |
ATCAACCACGGTGAAAGATG+GGG | 0.660270 | 8_4:+9060449 | None:intergenic |
TTGATGGATAAAGAACCTGT+TGG | 0.661951 | 8_4:-9057743 | Msa1312140:CDS |
AATGCTTTCGAATTTCAACA+TGG | 0.662441 | 8_4:+9058713 | None:intergenic |
ATGTTGGCAAGCTTCAACCG+CGG | 0.662762 | 8_4:+9058518 | None:intergenic |
TTATAACTAACATTATGTGG+AGG | 0.663994 | 8_4:-9057706 | Msa1312140:CDS |
ATTGACACACTTCAGAAACA+TGG | 0.669798 | 8_4:-9060360 | Msa1312140:CDS |
AGGAGAGACAAACAAGATGG+TGG | 0.673808 | 8_4:-9058610 | Msa1312140:CDS |
TCAGGACACAAATGAAACAG+TGG | 0.673826 | 8_4:-9058257 | Msa1312140:CDS |
GTTGCTCTCAACACAACTGG+TGG | 0.689491 | 8_4:-9059038 | Msa1312140:CDS |
AACGGAGTTAGAGAGTTCAA+CGG | 0.695815 | 8_4:-9059529 | Msa1312140:CDS |
GTTGGTATGAACACAACATG+GGG | 0.705560 | 8_4:-9059715 | Msa1312140:CDS |
ACCTACCCCATCTTTCACCG+TGG | 0.707453 | 8_4:-9060454 | Msa1312140:CDS |
AGGTGAAGTTAAATCAACCA+CGG | 0.715490 | 8_4:+9060437 | None:intergenic |
ATGTGTTCAAAATACCACGA+TGG | 0.719605 | 8_4:-9058768 | Msa1312140:CDS |
AAAGCTATAGCATTTGAATG+CGG | 0.720955 | 8_4:-9058295 | Msa1312140:CDS |
ACCACGGTGAAAGATGGGGT+AGG | 0.724166 | 8_4:+9060453 | None:intergenic |
GACACACTTCAGAAACATGG+TGG | 0.728054 | 8_4:-9060357 | Msa1312140:CDS |
ATCGAATCAACAGAACAACA+AGG | 0.735048 | 8_4:+9059578 | None:intergenic |
CATTGAGAAGTGTCTCAATG+TGG | 0.745193 | 8_4:+9060583 | None:intergenic |
TCGTCCAGGAGTGAAGACCG+CGG | 0.774693 | 8_4:-9058535 | Msa1312140:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAACAATTCTTATTCTTT+TGG | - | chr8_4:9057738-9057757 | Msa1312140:CDS | 15.0% |
!! | TATAGTAACAGTTATAAATT+GGG | - | chr8_4:9059941-9059960 | Msa1312140:CDS | 15.0% |
!! | AAATTCAAAAAATCAAGTAA+TGG | + | chr8_4:9060599-9060618 | None:intergenic | 15.0% |
!!! | TACTTGATTTTTTGAATTTT+AGG | - | chr8_4:9060600-9060619 | Msa1312140:CDS | 15.0% |
!! | CAATGATATTCAAATTGATT+TGG | - | chr8_4:9057924-9057943 | Msa1312140:CDS | 20.0% |
!!! | TATCAAATATTGATACCTTT+TGG | + | chr8_4:9057966-9057985 | None:intergenic | 20.0% |
!! | TCAATATTTGATATTGTTGT+TGG | - | chr8_4:9057973-9057992 | Msa1312140:CDS | 20.0% |
!! | TGGTTAATTAACAATTAGTT+AGG | + | chr8_4:9059543-9059562 | None:intergenic | 20.0% |
!! | CTATAGTAACAGTTATAAAT+TGG | - | chr8_4:9059940-9059959 | Msa1312140:CDS | 20.0% |
!! | ATAGTAACAGTTATAAATTG+GGG | - | chr8_4:9059942-9059961 | Msa1312140:CDS | 20.0% |
!! | AATTTGATTATGGATACATT+AGG | - | chr8_4:9060101-9060120 | Msa1312140:CDS | 20.0% |
! | TCTTATATTGTTTGTGTTGT+TGG | + | chr8_4:9057356-9057375 | None:intergenic | 25.0% |
! | ACAACACAAACAATATAAGA+TGG | - | chr8_4:9057356-9057375 | Msa1312140:CDS | 25.0% |
!! | AAATGAAAGAAGCTTTTAGA+AGG | + | chr8_4:9057697-9057716 | None:intergenic | 25.0% |
!!! | TTTTGTTGTTGAAGCTTTTA+AGG | - | chr8_4:9057714-9057733 | Msa1312140:CDS | 25.0% |
!!! | TTTCATCCTTTTTTGTTTTC+CGG | - | chr8_4:9058123-9058142 | Msa1312140:CDS | 25.0% |
! | AATAAACTAACATCCTCAAT+CGG | - | chr8_4:9058273-9058292 | Msa1312140:CDS | 25.0% |
!! | TTTGGAATTGAAAATGGATA+TGG | - | chr8_4:9058973-9058992 | Msa1312140:CDS | 25.0% |
!!! | AATTTTGAAAGATCTTGACA+AGG | - | chr8_4:9059165-9059184 | Msa1312140:intron | 25.0% |
!!! | AAATTCGAAAGCATTATTCA+AGG | - | chr8_4:9059199-9059218 | Msa1312140:intron | 25.0% |
! | TCAGAGATTAAGTATGTTAA+TGG | + | chr8_4:9059563-9059582 | None:intergenic | 25.0% |
!! | ACCTTTTGATAAACTTCTAA+TGG | - | chr8_4:9059752-9059771 | Msa1312140:CDS | 25.0% |
! | ACCATTAGAAGTTTATCAAA+AGG | + | chr8_4:9059756-9059775 | None:intergenic | 25.0% |
! | GTTCAATGCTTAAAACAAAA+AGG | - | chr8_4:9059774-9059793 | Msa1312140:CDS | 25.0% |
!! | ACTAGTTATAAATTTTGTCG+CGG | - | chr8_4:9060028-9060047 | Msa1312140:CDS | 25.0% |
! | TAACAGCAGTTCAATTATTA+TGG | - | chr8_4:9060075-9060094 | Msa1312140:CDS | 25.0% |
! | AACAGCAGTTCAATTATTAT+GGG | - | chr8_4:9060076-9060095 | Msa1312140:CDS | 25.0% |
! | ATTATGGGTGAATTTGATTA+TGG | - | chr8_4:9060091-9060110 | Msa1312140:CDS | 25.0% |
! | CACATAATGTTAGTTATAAG+AGG | + | chr8_4:9060197-9060216 | None:intergenic | 25.0% |
! | CTCTTATAACTAACATTATG+TGG | - | chr8_4:9060195-9060214 | Msa1312140:CDS | 25.0% |
! | TTATAACTAACATTATGTGG+AGG | - | chr8_4:9060198-9060217 | Msa1312140:CDS | 25.0% |
! | GAGTCAACAAAATTACTATT+TGG | + | chr8_4:9060247-9060266 | None:intergenic | 25.0% |
!! | TTTAAAGGTGAGACTATTTT+TGG | - | chr8_4:9060272-9060291 | Msa1312140:CDS | 25.0% |
! | TGTTTAATGAGTTTAATGCA+AGG | - | chr8_4:9060351-9060370 | Msa1312140:CDS | 25.0% |
!!! | ATTTAAGAGCAAGTTGTTTT+TGG | - | chr8_4:9060406-9060425 | Msa1312140:CDS | 25.0% |
!!! | TTTAAGAGCAAGTTGTTTTT+GGG | - | chr8_4:9060407-9060426 | Msa1312140:CDS | 25.0% |
AGAACAATAGATTGTCATGA+AGG | + | chr8_4:9057389-9057408 | None:intergenic | 30.0% | |
TCATGACAATCTATTGTTCT+AGG | - | chr8_4:9057389-9057408 | Msa1312140:CDS | 30.0% | |
CATGACAATCTATTGTTCTA+GGG | - | chr8_4:9057390-9057409 | Msa1312140:CDS | 30.0% | |
TGATCAATGGTAAAAGAATG+AGG | + | chr8_4:9057490-9057509 | None:intergenic | 30.0% | |
CTTAAAACTAACGTTGAGTT+TGG | - | chr8_4:9057592-9057611 | Msa1312140:CDS | 30.0% | |
!! | AAATTGATTTGGTTCGTAGT+GGG | - | chr8_4:9057935-9057954 | Msa1312140:CDS | 30.0% |
! | CAAATATTGATACCTTTTGG+CGG | + | chr8_4:9057963-9057982 | None:intergenic | 30.0% |
! | GATGTTGTTTGTTTGAAGAT+TGG | - | chr8_4:9057997-9058016 | Msa1312140:CDS | 30.0% |
TTTGTTCCGGAAAACAAAAA+AGG | + | chr8_4:9058132-9058151 | None:intergenic | 30.0% | |
! | TTATTCAACCTTGTTTGCAA+AGG | + | chr8_4:9058258-9058277 | None:intergenic | 30.0% |
TGTTACAAATCACATGATCA+AGG | + | chr8_4:9058729-9058748 | None:intergenic | 30.0% | |
! | TTGATCATGTGATTTGTAAC+AGG | - | chr8_4:9058728-9058747 | Msa1312140:CDS | 30.0% |
ACTCACTTTGAATCAAATGA+AGG | - | chr8_4:9058754-9058773 | Msa1312140:CDS | 30.0% | |
! | AAATGAAGGTGACAAAGTTT+TGG | - | chr8_4:9058768-9058787 | Msa1312140:CDS | 30.0% |
TTGATCAACTGAAGAACAAA+TGG | + | chr8_4:9058839-9058858 | None:intergenic | 30.0% | |
AACTCAAAGAAGAAAAGAAG+TGG | - | chr8_4:9059040-9059059 | Msa1312140:CDS | 30.0% | |
ATAACCAAACTATTGCACAT+TGG | - | chr8_4:9059086-9059105 | Msa1312140:CDS | 30.0% | |
AATGCTTTCGAATTTCAACA+TGG | + | chr8_4:9059194-9059213 | None:intergenic | 30.0% | |
GACAATGGTTTAACATTGTT+AGG | - | chr8_4:9059322-9059341 | Msa1312140:CDS | 30.0% | |
TTAACATTGTTAGGACTTGT+CGG | - | chr8_4:9059331-9059350 | Msa1312140:CDS | 30.0% | |
GTGAATGTCAAAATGATTAC+AGG | - | chr8_4:9059415-9059434 | Msa1312140:CDS | 30.0% | |
AAAGCTATAGCATTTGAATG+CGG | - | chr8_4:9059609-9059628 | Msa1312140:CDS | 30.0% | |
AATAATTGAACTGCTGTTAG+TGG | + | chr8_4:9060074-9060093 | None:intergenic | 30.0% | |
AAAACCAACTAAGGATTTGA+TGG | - | chr8_4:9060145-9060164 | Msa1312140:CDS | 30.0% | |
TTATCCATCAAATCCTTAGT+TGG | + | chr8_4:9060152-9060171 | None:intergenic | 30.0% | |
!! | TTGTTGACTCTTCAGTTTAA+AGG | - | chr8_4:9060257-9060276 | Msa1312140:CDS | 30.0% |
TGAGTTTAATGCAAGGAAAT+TGG | - | chr8_4:9060358-9060377 | Msa1312140:CDS | 30.0% | |
AGAAGAAGAATGTGTTTGAA+GGG | - | chr8_4:9060381-9060400 | Msa1312140:CDS | 30.0% | |
!!! | AAGTTGTTTTTGGGAATTGT+TGG | - | chr8_4:9060416-9060435 | Msa1312140:CDS | 30.0% |
AACTTCACAACAAAACCAAT+TGG | + | chr8_4:9060557-9060576 | None:intergenic | 30.0% | |
! | TGGTTCAAGTTTGTGAACAA+GGG | + | chr8_4:9057304-9057323 | None:intergenic | 35.0% |
! | TTGTTTGTGTTGTTGGTGTT+TGG | + | chr8_4:9057349-9057368 | None:intergenic | 35.0% |
!!! | AGGTGTGATTTTTGGTTTCT+TGG | + | chr8_4:9057434-9057453 | None:intergenic | 35.0% |
AGGTGAAGTTAAATCAACCA+CGG | + | chr8_4:9057470-9057489 | None:intergenic | 35.0% | |
TACGAGAGTTTCTTGATCAA+TGG | + | chr8_4:9057503-9057522 | None:intergenic | 35.0% | |
ATTGACACACTTCAGAAACA+TGG | - | chr8_4:9057544-9057563 | Msa1312140:CDS | 35.0% | |
TCAATTCGACAACAAGTGTT+TGG | - | chr8_4:9057649-9057668 | Msa1312140:CDS | 35.0% | |
!!! | AGGTGGTTTTTTGTATGTGT+TGG | + | chr8_4:9057677-9057696 | None:intergenic | 35.0% |
!! | TGAAAGAAGCTTTTAGAAGG+TGG | + | chr8_4:9057694-9057713 | None:intergenic | 35.0% |
!! | CAAATTGATTTGGTTCGTAG+TGG | - | chr8_4:9057934-9057953 | Msa1312140:CDS | 35.0% |
! | GAGCATTTTTGCATATCCAT+CGG | + | chr8_4:9058160-9058179 | None:intergenic | 35.0% |
TGCAAAAATGCTCGTTACAT+CGG | - | chr8_4:9058167-9058186 | Msa1312140:CDS | 35.0% | |
AAGAAACTCCTTTGCAAACA+AGG | - | chr8_4:9058247-9058266 | Msa1312140:CDS | 35.0% | |
ATCGAATCAACAGAACAACA+AGG | + | chr8_4:9058329-9058348 | None:intergenic | 35.0% | |
!! | CTGTTGATTCGATATTTCAC+CGG | - | chr8_4:9058336-9058355 | Msa1312140:intron | 35.0% |
!! | TGTTGATTCGATATTTCACC+GGG | - | chr8_4:9058337-9058356 | Msa1312140:intron | 35.0% |
GATGTGATGAATGCAGTTAT+TGG | - | chr8_4:9058417-9058436 | Msa1312140:intron | 35.0% | |
AATGATGACTGATCAAGCAA+TGG | - | chr8_4:9058533-9058552 | Msa1312140:CDS | 35.0% | |
ACTTTCTGCATGTGAAACTA+TGG | - | chr8_4:9058563-9058582 | Msa1312140:CDS | 35.0% | |
CTTTCTGCATGTGAAACTAT+GGG | - | chr8_4:9058564-9058583 | Msa1312140:CDS | 35.0% | |
! | ACTATTTGCACTGATAAGAC+AGG | - | chr8_4:9058597-9058616 | Msa1312140:CDS | 35.0% |
GTTCTTCAGTTGATCAAAGA+AGG | - | chr8_4:9058842-9058861 | Msa1312140:CDS | 35.0% | |
GGTGTTCACAAATTGAAATC+AGG | - | chr8_4:9058887-9058906 | Msa1312140:CDS | 35.0% | |
!! | GATTCTGAATTCGAGTTTTC+AGG | - | chr8_4:9058914-9058933 | Msa1312140:CDS | 35.0% |
GGAAAAAGCAATGCTATCTT+GGG | - | chr8_4:9058946-9058965 | Msa1312140:CDS | 35.0% | |
!!! | GGCTGTTTTGGAATTGAAAA+TGG | - | chr8_4:9058967-9058986 | Msa1312140:CDS | 35.0% |
!!! | GAAGTGGAGTTTTGTTAAGA+AGG | - | chr8_4:9059056-9059075 | Msa1312140:CDS | 35.0% |
CTTTCCAATGTGCAATAGTT+TGG | + | chr8_4:9059093-9059112 | None:intergenic | 35.0% | |
CAAACTATTGCACATTGGAA+AGG | - | chr8_4:9059091-9059110 | Msa1312140:CDS | 35.0% | |
ATGTGTTCAAAATACCACGA+TGG | - | chr8_4:9059136-9059155 | Msa1312140:CDS | 35.0% | |
!! | CGAAAGCATTATTCAAGGTA+TGG | - | chr8_4:9059204-9059223 | Msa1312140:intron | 35.0% |
! | AAGATGGTGGTAAAAGACAA+TGG | - | chr8_4:9059307-9059326 | Msa1312140:intron | 35.0% |
CATACTTAATCTCTGATGAC+AGG | - | chr8_4:9059567-9059586 | Msa1312140:CDS | 35.0% | |
GTTTCATTTGTGTCCTGATT+TGG | + | chr8_4:9059645-9059664 | None:intergenic | 35.0% | |
ACAAATGAAACAGTGGTTGA+AGG | - | chr8_4:9059654-9059673 | Msa1312140:CDS | 35.0% | |
AGTTGAGAAAATCTCTGTGA+TGG | - | chr8_4:9059719-9059738 | Msa1312140:CDS | 35.0% | |
ATATCAGCTTCTTTCAATGC+TGG | + | chr8_4:9059840-9059859 | None:intergenic | 35.0% | |
GCATTGAAAGAAGCTGATAT+TGG | - | chr8_4:9059840-9059859 | Msa1312140:CDS | 35.0% | |
! | AGTTATAAATTTTGTCGCGG+CGG | - | chr8_4:9060031-9060050 | Msa1312140:CDS | 35.0% |
TATGGATACATTAGGTGCAT+TGG | - | chr8_4:9060109-9060128 | Msa1312140:CDS | 35.0% | |
TGCAACTGAAAAACCAACTA+AGG | - | chr8_4:9060136-9060155 | Msa1312140:CDS | 35.0% | |
! | TTGATGGATAAAGAACCTGT+TGG | - | chr8_4:9060161-9060180 | Msa1312140:CDS | 35.0% |
!!! | TATTTTTGGTGTGACTTCGA+AGG | - | chr8_4:9060286-9060305 | Msa1312140:CDS | 35.0% |
GAGAAGAAGAATGTGTTTGA+AGG | - | chr8_4:9060380-9060399 | Msa1312140:CDS | 35.0% | |
!! | AGAAGTTTGCTAATACTGAG+AGG | - | chr8_4:9060480-9060499 | Msa1312140:CDS | 35.0% |
CTAATACTGAGAGGTTGAAT+TGG | - | chr8_4:9060489-9060508 | Msa1312140:CDS | 35.0% | |
!! | AGAGAGTGGATTGTTTGTAT+TGG | - | chr8_4:9060512-9060531 | Msa1312140:CDS | 35.0% |
! | AGTAATGGTTTATCTGAGAC+TGG | + | chr8_4:9060584-9060603 | None:intergenic | 35.0% |
! | GTGGTTCAAGTTTGTGAACA+AGG | + | chr8_4:9057305-9057324 | None:intergenic | 40.0% |
!! | CATTGAGAAGTGTCTCAATG+TGG | + | chr8_4:9057324-9057343 | None:intergenic | 40.0% |
AATCAACCACGGTGAAAGAT+GGG | + | chr8_4:9057459-9057478 | None:intergenic | 40.0% | |
AAATCAACCACGGTGAAAGA+TGG | + | chr8_4:9057460-9057479 | None:intergenic | 40.0% | |
! | GTTTGTGCTACTCTTTCACT+TGG | - | chr8_4:9057760-9057779 | Msa1312140:CDS | 40.0% |
! | AAAGAGCATGGAGTCAAAGA+AGG | - | chr8_4:9057793-9057812 | Msa1312140:CDS | 40.0% |
!! | GTCAAAGAAGGTTGGTATGA+TGG | - | chr8_4:9057805-9057824 | Msa1312140:CDS | 40.0% |
!! | AAAGAAGGTTGGTATGATGG+TGG | - | chr8_4:9057808-9057827 | Msa1312140:CDS | 40.0% |
TCCATCTAGGAACAATCCAT+CGG | + | chr8_4:9058037-9058056 | None:intergenic | 40.0% | |
AAAATGCTCGTTACATCGGT+TGG | - | chr8_4:9058171-9058190 | Msa1312140:CDS | 40.0% | |
! | GGTTGGTATGAACACAACAT+GGG | - | chr8_4:9058188-9058207 | Msa1312140:CDS | 40.0% |
GTTGGTATGAACACAACATG+GGG | - | chr8_4:9058189-9058208 | Msa1312140:CDS | 40.0% | |
TTCGTCAATGTCGTTGCTTA+TGG | + | chr8_4:9058229-9058248 | None:intergenic | 40.0% | |
ACTAACATCCTCAATCGGAA+AGG | - | chr8_4:9058278-9058297 | Msa1312140:CDS | 40.0% | |
AACGGAGTTAGAGAGTTCAA+CGG | - | chr8_4:9058375-9058394 | Msa1312140:intron | 40.0% | |
AGTGTCAATGTCACAGCTAA+TGG | + | chr8_4:9058495-9058514 | None:intergenic | 40.0% | |
!!! | AAGGTGACAAAGTTTTGGCT+TGG | - | chr8_4:9058773-9058792 | Msa1312140:CDS | 40.0% |
!! | TTGGCTTGGTTTAGAACCAA+TGG | - | chr8_4:9058787-9058806 | Msa1312140:CDS | 40.0% |
! | GGTTTAGAACCAATGGAAGT+TGG | - | chr8_4:9058794-9058813 | Msa1312140:CDS | 40.0% |
GAATATGCACCAACTTCCAT+TGG | + | chr8_4:9058806-9058825 | None:intergenic | 40.0% | |
!!! | GATAGCATTGCTTTTTCCGT+CGG | + | chr8_4:9058944-9058963 | None:intergenic | 40.0% |
CGGAAAAAGCAATGCTATCT+TGG | - | chr8_4:9058945-9058964 | Msa1312140:CDS | 40.0% | |
! | AATGCTATCTTGGGCTGTTT+TGG | - | chr8_4:9058955-9058974 | Msa1312140:CDS | 40.0% |
TCAAAATACCACGATGGTTG+TGG | - | chr8_4:9059142-9059161 | Msa1312140:CDS | 40.0% | |
TCAAAATTCCACAACCATCG+TGG | + | chr8_4:9059153-9059172 | None:intergenic | 40.0% | |
TGAAGGAGAGACAAACAAGA+TGG | - | chr8_4:9059291-9059310 | Msa1312140:intron | 40.0% | |
CGGAATTCTTCAACCAAATC+AGG | - | chr8_4:9059629-9059648 | Msa1312140:CDS | 40.0% | |
TCAGGACACAAATGAAACAG+TGG | - | chr8_4:9059647-9059666 | Msa1312140:CDS | 40.0% | |
TGCATCATTTGTTCCATCTC+CGG | + | chr8_4:9059817-9059836 | None:intergenic | 40.0% | |
AGCTGATATTGGACTCTCAA+TGG | - | chr8_4:9059851-9059870 | Msa1312140:CDS | 40.0% | |
GCTGATATTGGACTCTCAAT+GGG | - | chr8_4:9059852-9059871 | Msa1312140:CDS | 40.0% | |
!! | ATTGGTGCTTCAAGTTGTGA+TGG | - | chr8_4:9060445-9060464 | Msa1312140:CDS | 40.0% |
!!! | TTGGTTTTGCTGCTGTTTCT+TGG | - | chr8_4:9060531-9060550 | Msa1312140:CDS | 40.0% |
! | GATGGGGTAGGTGTGATTTT+TGG | + | chr8_4:9057442-9057461 | None:intergenic | 45.0% |
ATCAACCACGGTGAAAGATG+GGG | + | chr8_4:9057458-9057477 | None:intergenic | 45.0% | |
GACACACTTCAGAAACATGG+TGG | - | chr8_4:9057547-9057566 | Msa1312140:CDS | 45.0% | |
! | CAGAAACATGGTGGAGTTGA+AGG | - | chr8_4:9057556-9057575 | Msa1312140:CDS | 45.0% |
GCTACTCTTTCACTTGGCTT+TGG | - | chr8_4:9057766-9057785 | Msa1312140:CDS | 45.0% | |
!! | GGCTTTGGAATCAAAGAGCA+TGG | - | chr8_4:9057781-9057800 | Msa1312140:CDS | 45.0% |
AGCATGGAGTCAAAGAAGGT+TGG | - | chr8_4:9057797-9057816 | Msa1312140:CDS | 45.0% | |
CTCTCAACGAATGTCCATCT+AGG | + | chr8_4:9058050-9058069 | None:intergenic | 45.0% | |
! | GTTGATGAATCGAGCATGAC+CGG | - | chr8_4:9058069-9058088 | Msa1312140:CDS | 45.0% |
! | TCCATCGGCAACTTTTGTTC+CGG | + | chr8_4:9058145-9058164 | None:intergenic | 45.0% |
! | CGGTTGGTATGAACACAACA+TGG | - | chr8_4:9058187-9058206 | Msa1312140:CDS | 45.0% |
ACATCCTCAATCGGAAAGGT+TGG | - | chr8_4:9058282-9058301 | Msa1312140:CDS | 45.0% | |
CAAACCAACCTTTCCGATTG+AGG | + | chr8_4:9058289-9058308 | None:intergenic | 45.0% | |
! | CTCAATCGGAAAGGTTGGTT+TGG | - | chr8_4:9058287-9058306 | Msa1312140:CDS | 45.0% |
GTTATCAGTCTTCGTGTTCC+CGG | + | chr8_4:9058358-9058377 | None:intergenic | 45.0% | |
GGGAACACGAAGACTGATAA+CGG | - | chr8_4:9058357-9058376 | Msa1312140:intron | 45.0% | |
AAAGTTACCGACGAAGAGCT+TGG | - | chr8_4:9059265-9059284 | Msa1312140:intron | 45.0% | |
TTCAACTCCAAGCTCTTCGT+CGG | + | chr8_4:9059275-9059294 | None:intergenic | 45.0% | |
AGGAGAGACAAACAAGATGG+TGG | - | chr8_4:9059294-9059313 | Msa1312140:intron | 45.0% | |
GTTAGGACTTGTCGGCATTA+AGG | - | chr8_4:9059339-9059358 | Msa1312140:CDS | 45.0% | |
ATTAAGGATCCATGTCGTCC+AGG | - | chr8_4:9059355-9059374 | Msa1312140:CDS | 45.0% | |
TGACATTCACACCAGCATGT+TGG | + | chr8_4:9059405-9059424 | None:intergenic | 45.0% | |
GGACTCTCAATGGGAATTCA+AGG | - | chr8_4:9059861-9059880 | Msa1312140:CDS | 45.0% | |
! | AAATTTTGTCGCGGCGGTTT+CGG | - | chr8_4:9060037-9060056 | Msa1312140:CDS | 45.0% |
!! | AGAGGCTTTGTTCTACCAAC+AGG | + | chr8_4:9060179-9060198 | None:intergenic | 45.0% |
GGGAATTGTTGGTGTGACAT+TGG | - | chr8_4:9060427-9060446 | Msa1312140:CDS | 45.0% | |
AGAGGTTGAATTGGAGAGAG+TGG | - | chr8_4:9060498-9060517 | Msa1312140:CDS | 45.0% | |
TCTAGGAACAATCCATCGGC+TGG | + | chr8_4:9058033-9058052 | None:intergenic | 50.0% | |
!! | GCCGATGGATTGTTCCTAGA+TGG | - | chr8_4:9058033-9058052 | Msa1312140:CDS | 50.0% |
CTCTACATGATCGCTCTCAC+CGG | + | chr8_4:9058091-9058110 | None:intergenic | 50.0% | |
TCCGGAACAAAAGTTGCCGA+TGG | - | chr8_4:9058141-9058160 | Msa1312140:CDS | 50.0% | |
TGTCGTTGTTGCTATCCCTG+AGG | - | chr8_4:9058464-9058483 | Msa1312140:intron | 50.0% | |
GTCGTTGTTGCTATCCCTGA+GGG | - | chr8_4:9058465-9058484 | Msa1312140:intron | 50.0% | |
CAGCTAATGGCAAACCCTCA+GGG | + | chr8_4:9058482-9058501 | None:intergenic | 50.0% | |
ACAGCTAATGGCAAACCCTC+AGG | + | chr8_4:9058483-9058502 | None:intergenic | 50.0% | |
GGAGTTGCTCTCAACACAAC+TGG | - | chr8_4:9058863-9058882 | Msa1312140:CDS | 50.0% | |
GTTGCTCTCAACACAACTGG+TGG | - | chr8_4:9058866-9058885 | Msa1312140:CDS | 50.0% | |
!!! | CGAGTTTTCAGGTAGTCCGA+CGG | - | chr8_4:9058925-9058944 | Msa1312140:CDS | 50.0% |
TTGGAAAGGAGCAGCAGAGA+TGG | - | chr8_4:9059105-9059124 | Msa1312140:CDS | 50.0% | |
GACGAAGAGCTTGGAGTTGA+AGG | - | chr8_4:9059274-9059293 | Msa1312140:intron | 50.0% | |
ATGTTGGCAAGCTTCAACCG+CGG | + | chr8_4:9059389-9059408 | None:intergenic | 50.0% | |
GTTGAAGCTTGCCAACATGC+TGG | - | chr8_4:9059391-9059410 | Msa1312140:CDS | 50.0% | |
GCAACTTCACACACGAAGAG+AGG | - | chr8_4:9059688-9059707 | Msa1312140:CDS | 50.0% | |
CTTCACACACGAAGAGAGGT+TGG | - | chr8_4:9059692-9059711 | Msa1312140:CDS | 50.0% | |
GGTCACGTAGTTGCTGTAAC+CGG | - | chr8_4:9059795-9059814 | Msa1312140:CDS | 50.0% | |
GTAGTTGCTGTAACCGGAGA+TGG | - | chr8_4:9059801-9059820 | Msa1312140:CDS | 50.0% | |
!! | GCTGCTGTTTCTTGGCCAAT+TGG | - | chr8_4:9060539-9060558 | Msa1312140:CDS | 50.0% |
ACCTACCCCATCTTTCACCG+TGG | - | chr8_4:9057450-9057469 | Msa1312140:CDS | 55.0% | |
ACCACGGTGAAAGATGGGGT+AGG | + | chr8_4:9057454-9057473 | None:intergenic | 55.0% | |
GGTGATCAAGTACCAGCCGA+TGG | - | chr8_4:9058018-9058037 | Msa1312140:CDS | 55.0% | |
GTCTTCACTCCTGGACGACA+TGG | + | chr8_4:9059367-9059386 | None:intergenic | 55.0% | |
TCGTCCAGGAGTGAAGACCG+CGG | - | chr8_4:9059369-9059388 | Msa1312140:CDS | 60.0% | |
TCAACCGCGGTCTTCACTCC+TGG | + | chr8_4:9059376-9059395 | None:intergenic | 60.0% | |
!! | TCGTAGTGGGCGCCGCCAAA+AGG | - | chr8_4:9057948-9057967 | Msa1312140:CDS | 65.0% |
TTTGTCGCGGCGGTTTCGGC+AGG | - | chr8_4:9060041-9060060 | Msa1312140:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 9057292 | 9060634 | 9057292 | ID=Msa1312140;Name=Msa1312140 |
chr8_4 | mRNA | 9057292 | 9060634 | 9057292 | ID=Msa1312140-mRNA-1;Parent=Msa1312140;Name=Msa1312140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|3|0|1019 |
chr8_4 | exon | 9059308 | 9060634 | 9059308 | ID=Msa1312140-mRNA-1:exon:3343;Parent=Msa1312140-mRNA-1 |
chr8_4 | exon | 9058490 | 9059176 | 9058490 | ID=Msa1312140-mRNA-1:exon:3342;Parent=Msa1312140-mRNA-1 |
chr8_4 | exon | 9057292 | 9058337 | 9057292 | ID=Msa1312140-mRNA-1:exon:3341;Parent=Msa1312140-mRNA-1 |
chr8_4 | CDS | 9059308 | 9060634 | 9059308 | ID=Msa1312140-mRNA-1:cds;Parent=Msa1312140-mRNA-1 |
chr8_4 | CDS | 9058490 | 9059176 | 9058490 | ID=Msa1312140-mRNA-1:cds;Parent=Msa1312140-mRNA-1 |
chr8_4 | CDS | 9057292 | 9058337 | 9057292 | ID=Msa1312140-mRNA-1:cds;Parent=Msa1312140-mRNA-1 |
Gene Sequence |
Protein sequence |