AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1312140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1312140 MtrunA17_Chr6g0456201 91.266 1019 87 2 1 1017 1 1019 0.0 1885
Msa1312140 MtrunA17_Chr7g0260401 68.096 956 289 8 71 1017 104 1052 0.0 1256
Msa1312140 MtrunA17_Chr8g0340261 93.892 573 18 1 447 1019 1 556 0.0 1096
Msa1312140 MtrunA17_Chr2g0298871 55.843 967 403 9 52 1009 123 1074 0.0 1020
Msa1312140 MtrunA17_Chr4g0002331 56.231 971 397 12 50 1009 133 1086 0.0 1012
Msa1312140 MtrunA17_Chr1g0173111 48.133 964 455 16 55 1004 79 1011 0.0 863
Msa1312140 MtrunA17_Chr8g0340271 92.998 457 26 1 1 457 1 451 0.0 857
Msa1312140 MtrunA17_Chr8g0382071 47.479 952 459 15 69 1007 94 1017 0.0 845
Msa1312140 MtrunA17_Chr4g0054021 48.330 958 460 14 56 1004 6 937 0.0 816
Msa1312140 MtrunA17_Chr5g0401211 47.331 974 472 15 41 1004 72 1014 0.0 805
Msa1312140 MtrunA17_Chr3g0134771 46.410 961 478 12 55 1004 82 1016 0.0 796
Msa1312140 MtrunA17_Chr4g0020551 46.400 875 426 14 69 928 27 873 0.0 748
Msa1312140 MtrunA17_Chr8g0355421 41.474 950 511 16 69 1004 87 1005 0.0 689
Msa1312140 MtrunA17_Chr5g0447521 33.257 875 526 16 151 1002 165 1004 2.75e-138 442
Msa1312140 MtrunA17_Chr4g0005551 30.572 1014 627 22 19 1004 3 967 1.04e-137 439
Msa1312140 MtrunA17_Chr2g0334231 51.095 411 189 3 40 450 106 504 1.12e-123 387
Msa1312140 MtrunA17_Chr7g0263361 32.836 871 453 27 101 881 38 866 2.38e-107 359
Msa1312140 MtrunA17_Chr8g0346461 31.603 867 479 23 105 885 30 868 4.90e-95 325
Msa1312140 MtrunA17_Chr3g0134951 29.804 869 499 19 95 890 3 833 2.91e-89 308
Msa1312140 MtrunA17_Chr2g0334221 51.839 299 137 6 468 764 43 336 2.25e-83 274
Msa1312140 MtrunA17_Chr2g0334201 55.621 169 70 1 846 1009 1 169 1.53e-61 207
Msa1312140 MtrunA17_Chr4g0065481 23.188 759 468 23 71 816 1 657 8.19e-47 182
Msa1312140 MtrunA17_Chr4g0072131 23.109 727 464 19 94 816 24 659 3.42e-46 180
Msa1312140 MtrunA17_Chr2g0298031 23.561 747 469 18 77 816 11 662 9.13e-46 178
Msa1312140 MtrunA17_Chr8g0381711 24.571 757 469 20 153 881 69 751 9.66e-46 178
Msa1312140 MtrunA17_Chr2g0304941 22.559 758 471 23 80 824 10 664 1.51e-44 174
Msa1312140 MtrunA17_Chr3g0138931 24.958 601 369 15 218 816 136 656 3.18e-43 171
Msa1312140 MtrunA17_Chr2g0333721 24.595 618 365 17 218 824 134 661 3.33e-43 170
Msa1312140 MtrunA17_Chr1g0148031 23.286 700 446 18 122 816 43 656 4.36e-43 170
Msa1312140 MtrunA17_Chr6g0452721 23.548 620 369 17 218 824 138 665 2.09e-42 168
Msa1312140 MtrunA17_Chr8g0365021 24.086 602 373 15 218 816 206 726 7.43e-42 166
Msa1312140 MtrunA17_Chr4g0059961 23.548 620 369 17 218 824 140 667 1.11e-41 166
Msa1312140 MtrunA17_Chr1g0147981 22.535 710 439 18 122 816 60 673 3.43e-41 164
Msa1312140 MtrunA17_Chr8g0335291 22.900 607 388 13 218 824 144 670 7.01e-38 154
Msa1312140 MtrunA17_Chr7g0276551 24.201 657 388 21 385 1019 42 610 7.16e-34 139
Msa1312140 MtrunA17_Chr5g0421231 76.250 80 19 0 520 599 279 358 1.47e-31 134
Msa1312140 MtrunA17_Chr3g0131151 23.719 683 388 22 174 779 217 843 1.25e-22 105
Msa1312140 MtrunA17_Chr2g0297051 31.188 202 105 4 620 821 804 971 1.01e-19 95.5
Msa1312140 MtrunA17_Chr8g0374331 29.508 183 97 3 639 821 42 192 7.50e-19 87.4
Msa1312140 MtrunA17_Chr4g0052521 29.798 198 106 4 624 821 775 939 1.27e-18 91.7
Msa1312140 MtrunA17_Chr8g0374391 29.508 183 97 3 639 821 35 185 2.73e-18 85.5
Msa1312140 MtrunA17_Chr5g0397621 31.694 183 89 5 619 798 671 820 8.22e-17 85.9
Msa1312140 MtrunA17_Chr8g0339181 30.332 211 107 5 630 839 751 922 3.44e-16 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1312140 AT3G22910.1 67.583 1018 301 11 12 1018 17 1016 0.0 1313
Msa1312140 AT3G63380.1 66.004 1006 305 10 28 1013 27 1015 0.0 1276
Msa1312140 AT4G29900.1 56.531 957 400 8 69 1017 114 1062 0.0 1058
Msa1312140 AT4G29900.2 56.531 957 400 8 69 1017 114 1062 0.0 1058
Msa1312140 AT5G57110.1 56.029 962 405 7 64 1017 109 1060 0.0 1052
Msa1312140 AT5G57110.3 56.029 962 405 7 64 1017 109 1060 0.0 1052
Msa1312140 AT5G57110.2 56.029 962 405 7 64 1017 109 1060 0.0 1052
Msa1312140 AT3G21180.1 55.959 965 404 11 65 1017 124 1079 0.0 1016
Msa1312140 AT3G57330.1 47.594 956 464 12 56 1004 80 1005 0.0 862
Msa1312140 AT3G57330.2 47.594 956 464 12 56 1004 25 950 0.0 860
Msa1312140 AT2G41560.1 44.466 1012 515 15 6 1007 37 1011 0.0 838
Msa1312140 AT2G41560.2 46.645 939 461 14 79 1007 1 909 0.0 825
Msa1312140 AT2G41560.3 46.645 939 461 14 79 1007 1 909 0.0 825
Msa1312140 AT2G41560.4 46.645 939 461 14 79 1007 1 909 0.0 825
Msa1312140 AT1G27770.4 46.674 962 475 14 55 1004 82 1017 0.0 811
Msa1312140 AT1G27770.1 46.674 962 475 14 55 1004 82 1017 0.0 811
Msa1312140 AT1G27770.3 46.820 959 472 14 58 1004 22 954 0.0 811
Msa1312140 AT4G37640.1 46.930 961 474 13 55 1004 79 1014 0.0 787
Msa1312140 AT2G22950.1 47.034 961 474 13 55 1004 79 1015 0.0 781
Msa1312140 AT5G53010.1 37.939 912 483 20 69 951 140 997 3.85e-178 547
Msa1312140 AT5G53010.2 37.213 653 389 12 62 712 133 766 1.89e-124 398
Msa1312140 AT1G27770.2 40.448 581 316 10 55 621 82 646 5.05e-119 388
Msa1312140 AT1G27770.2 57.929 309 125 2 701 1004 635 943 1.71e-109 362
Msa1312140 AT1G07670.2 33.413 835 465 24 122 885 54 868 1.11e-108 363
Msa1312140 AT1G07670.1 33.413 835 465 24 122 885 54 868 1.11e-108 363
Msa1312140 AT1G07810.1 33.413 835 465 24 122 885 54 868 2.95e-108 362
Msa1312140 AT4G00900.2 33.411 862 458 27 94 868 14 846 3.83e-102 345
Msa1312140 AT4G00900.1 33.411 862 458 27 94 868 14 846 3.83e-102 345
Msa1312140 AT1G10130.1 28.807 972 554 27 122 995 32 963 7.94e-90 310
Msa1312140 AT2G24520.2 25.632 593 359 14 225 816 188 699 3.77e-45 177
Msa1312140 AT2G24520.3 25.632 593 359 14 225 816 125 636 5.17e-45 176
Msa1312140 AT2G24520.1 25.632 593 359 14 225 816 125 636 5.17e-45 176
Msa1312140 AT1G80660.2 24.149 617 369 18 218 824 10 537 8.05e-45 175
Msa1312140 AT1G80660.3 24.149 617 369 18 218 824 139 666 1.22e-44 175
Msa1312140 AT1G80660.4 24.149 617 369 18 218 824 139 666 1.29e-44 175
Msa1312140 AT1G80660.1 24.149 617 369 18 218 824 139 666 1.36e-44 175
Msa1312140 AT3G60330.4 23.284 743 455 24 94 824 22 661 1.77e-44 175
Msa1312140 AT3G60330.3 23.284 743 455 24 94 824 22 661 1.77e-44 175
Msa1312140 AT3G42640.1 23.421 760 466 25 78 824 8 664 2.83e-44 174
Msa1312140 AT3G60330.2 23.149 743 456 24 94 824 22 661 3.86e-44 174
Msa1312140 AT3G60330.1 23.149 743 456 24 94 824 22 661 3.86e-44 174
Msa1312140 AT2G07560.1 23.312 785 481 24 78 847 8 686 5.31e-44 173
Msa1312140 AT1G17260.1 23.974 609 364 13 218 816 142 661 6.54e-42 167
Msa1312140 AT3G47950.1 23.586 619 370 18 218 824 142 669 8.32e-42 166
Msa1312140 AT3G47950.2 23.586 619 370 18 218 824 142 669 8.32e-42 166
Msa1312140 AT4G30190.1 24.224 644 381 17 218 847 134 684 9.82e-42 166
Msa1312140 AT2G18960.3 24.224 644 381 17 218 847 70 620 2.84e-41 164
Msa1312140 AT2G18960.2 24.224 644 381 17 218 847 70 620 2.84e-41 164
Msa1312140 AT2G18960.1 24.224 644 381 17 218 847 134 684 3.75e-41 164
Msa1312140 AT5G62670.1 23.290 614 378 16 218 824 138 665 4.48e-41 164
Msa1312140 AT5G57350.4 24.092 606 368 16 218 816 135 655 1.90e-40 162
Msa1312140 AT5G57350.2 24.092 606 368 16 218 816 135 655 1.90e-40 162
Msa1312140 AT5G57350.1 24.092 606 368 16 218 816 135 655 1.90e-40 162
Msa1312140 AT4G30190.2 23.423 666 392 19 218 847 134 717 1.02e-38 157
Msa1312140 AT2G24520.4 24.306 432 276 8 385 816 13 393 9.39e-29 124
Msa1312140 AT5G57350.3 24.194 434 274 10 385 816 13 393 3.03e-28 122
Msa1312140 AT5G23630.1 23.433 670 379 22 174 766 217 829 3.64e-22 103
Msa1312140 AT1G63440.1 31.148 183 94 2 639 821 787 937 2.43e-19 94.7
Msa1312140 AT5G44790.1 32.512 203 103 5 619 821 780 948 6.79e-19 93.2
Msa1312140 AT4G11730.1 23.235 340 215 13 122 454 45 345 2.20e-17 88.2
Msa1312140 AT4G30110.1 27.830 212 113 4 636 847 508 679 3.48e-15 81.3
Msa1312140 AT4G30110.2 27.830 212 113 4 636 847 508 679 3.48e-15 81.3

Find 163 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAGCAGTTCAATTATTA+TGG 0.176402 8_4:-9057829 Msa1312140:CDS
TCATGACAATCTATTGTTCT+AGG 0.188399 8_4:-9060515 Msa1312140:CDS
TTGTTGACTCTTCAGTTTAA+AGG 0.188937 8_4:-9057647 Msa1312140:CDS
TGAGTTTAATGCAAGGAAAT+TGG 0.225227 8_4:-9057546 Msa1312140:CDS
TCTTATATTGTTTGTGTTGT+TGG 0.228608 8_4:+9060551 None:intergenic
ATTATGGGTGAATTTGATTA+TGG 0.241738 8_4:-9057813 Msa1312140:CDS
CTATAGTAACAGTTATAAAT+TGG 0.242031 8_4:-9057964 Msa1312140:CDS
TTTAACAATTCTTATTCTTT+TGG 0.264806 8_4:-9060166 Msa1312140:CDS
ACTTTCTGCATGTGAAACTA+TGG 0.271109 8_4:-9059341 Msa1312140:CDS
AATGCTATCTTGGGCTGTTT+TGG 0.282495 8_4:-9058949 Msa1312140:CDS
TTTGGAATTGAAAATGGATA+TGG 0.303373 8_4:-9058931 Msa1312140:CDS
CAATGATATTCAAATTGATT+TGG 0.308945 8_4:-9059980 Msa1312140:CDS
TATCAAATATTGATACCTTT+TGG 0.309835 8_4:+9059941 None:intergenic
AAATGAAGGTGACAAAGTTT+TGG 0.310296 8_4:-9059136 Msa1312140:CDS
GTTATCAGTCTTCGTGTTCC+CGG 0.311426 8_4:+9059549 None:intergenic
GAGTCAACAAAATTACTATT+TGG 0.316887 8_4:+9057660 None:intergenic
TTCGTCAATGTCGTTGCTTA+TGG 0.324687 8_4:+9059678 None:intergenic
CTTTCCAATGTGCAATAGTT+TGG 0.325768 8_4:+9058814 None:intergenic
GCTGCTGTTTCTTGGCCAAT+TGG 0.334729 8_4:-9057365 Msa1312140:CDS
GCTACTCTTTCACTTGGCTT+TGG 0.339406 8_4:-9060138 Msa1312140:CDS
GTTAGGACTTGTCGGCATTA+AGG 0.342087 8_4:-9058565 Msa1312140:CDS
CTTAAAACTAACGTTGAGTT+TGG 0.343232 8_4:-9060312 Msa1312140:CDS
GACAATGGTTTAACATTGTT+AGG 0.351609 8_4:-9058582 Msa1312140:CDS
GTTTCATTTGTGTCCTGATT+TGG 0.353718 8_4:+9058262 None:intergenic
TATAGTAACAGTTATAAATT+GGG 0.361053 8_4:-9057963 Msa1312140:CDS
CACATAATGTTAGTTATAAG+AGG 0.361954 8_4:+9057710 None:intergenic
CTAATACTGAGAGGTTGAAT+TGG 0.365165 8_4:-9057415 Msa1312140:CDS
GTTCAATGCTTAAAACAAAA+AGG 0.379356 8_4:-9058130 Msa1312140:CDS
GCATTGAAAGAAGCTGATAT+TGG 0.384204 8_4:-9058064 Msa1312140:CDS
CTCAATCGGAAAGGTTGGTT+TGG 0.386409 8_4:-9059617 Msa1312140:CDS
GATGTGATGAATGCAGTTAT+TGG 0.388736 8_4:-9059487 Msa1312140:CDS
AATTTGATTATGGATACATT+AGG 0.389466 8_4:-9057803 Msa1312140:CDS
TTGTTTGTGTTGTTGGTGTT+TGG 0.395216 8_4:+9060558 None:intergenic
AATAATTGAACTGCTGTTAG+TGG 0.396163 8_4:+9057833 None:intergenic
TCAATTCGACAACAAGTGTT+TGG 0.401723 8_4:-9060255 Msa1312140:CDS
AAAACCAACTAAGGATTTGA+TGG 0.402456 8_4:-9057759 Msa1312140:CDS
GATGTTGTTTGTTTGAAGAT+TGG 0.403237 8_4:-9059907 Msa1312140:CDS
GCCGATGGATTGTTCCTAGA+TGG 0.404691 8_4:-9059871 Msa1312140:CDS
CGGAATTCTTCAACCAAATC+AGG 0.406571 8_4:-9058275 Msa1312140:CDS
GGTGTTCACAAATTGAAATC+AGG 0.407128 8_4:-9059017 Msa1312140:CDS
TTGATCAACTGAAGAACAAA+TGG 0.407577 8_4:+9059068 None:intergenic
AGAGGCTTTGTTCTACCAAC+AGG 0.415046 8_4:+9057728 None:intergenic
TTATCCATCAAATCCTTAGT+TGG 0.417137 8_4:+9057755 None:intergenic
GTTCTTCAGTTGATCAAAGA+AGG 0.419515 8_4:-9059062 Msa1312140:CDS
TGCATCATTTGTTCCATCTC+CGG 0.420701 8_4:+9058090 None:intergenic
AACAGCAGTTCAATTATTAT+GGG 0.424661 8_4:-9057828 Msa1312140:CDS
CATGACAATCTATTGTTCTA+GGG 0.426996 8_4:-9060514 Msa1312140:CDS
AGCTGATATTGGACTCTCAA+TGG 0.430102 8_4:-9058053 Msa1312140:CDS
CAAACCAACCTTTCCGATTG+AGG 0.434963 8_4:+9059618 None:intergenic
GTGAATGTCAAAATGATTAC+AGG 0.438056 8_4:-9058489 Msa1312140:intron
AGTGTCAATGTCACAGCTAA+TGG 0.439120 8_4:+9059412 None:intergenic
AGAGGTTGAATTGGAGAGAG+TGG 0.441904 8_4:-9057406 Msa1312140:CDS
ACCATTAGAAGTTTATCAAA+AGG 0.442657 8_4:+9058151 None:intergenic
CGAAAGCATTATTCAAGGTA+TGG 0.444612 8_4:-9058700 Msa1312140:CDS
TTTGTCGCGGCGGTTTCGGC+AGG 0.445086 8_4:-9057863 Msa1312140:CDS
TACGAGAGTTTCTTGATCAA+TGG 0.446567 8_4:+9060404 None:intergenic
TCAATATTTGATATTGTTGT+TGG 0.451599 8_4:-9059931 Msa1312140:CDS
CAGAAACATGGTGGAGTTGA+AGG 0.451952 8_4:-9060348 Msa1312140:CDS
GTCGTTGTTGCTATCCCTGA+GGG 0.454074 8_4:-9059439 Msa1312140:CDS
AACTTCACAACAAAACCAAT+TGG 0.455892 8_4:+9057350 None:intergenic
GGACTCTCAATGGGAATTCA+AGG 0.457786 8_4:-9058043 Msa1312140:CDS
GAGAAGAAGAATGTGTTTGA+AGG 0.463945 8_4:-9057524 Msa1312140:CDS
AGAGAGTGGATTGTTTGTAT+TGG 0.469398 8_4:-9057392 Msa1312140:CDS
GGAGTTGCTCTCAACACAAC+TGG 0.473577 8_4:-9059041 Msa1312140:CDS
GGTCACGTAGTTGCTGTAAC+CGG 0.473722 8_4:-9058109 Msa1312140:CDS
AAATCAACCACGGTGAAAGA+TGG 0.474976 8_4:+9060447 None:intergenic
TCAAAATACCACGATGGTTG+TGG 0.475860 8_4:-9058762 Msa1312140:CDS
TATGGATACATTAGGTGCAT+TGG 0.476382 8_4:-9057795 Msa1312140:CDS
AAATTCGAAAGCATTATTCA+AGG 0.477862 8_4:-9058705 Msa1312140:CDS
ACAGCTAATGGCAAACCCTC+AGG 0.478867 8_4:+9059424 None:intergenic
TCAACCGCGGTCTTCACTCC+TGG 0.480063 8_4:+9058531 None:intergenic
GACGAAGAGCTTGGAGTTGA+AGG 0.481741 8_4:-9058630 Msa1312140:CDS
GCTGATATTGGACTCTCAAT+GGG 0.482404 8_4:-9058052 Msa1312140:CDS
GAATATGCACCAACTTCCAT+TGG 0.484480 8_4:+9059101 None:intergenic
ATATCAGCTTCTTTCAATGC+TGG 0.486714 8_4:+9058067 None:intergenic
AATCAACCACGGTGAAAGAT+GGG 0.488185 8_4:+9060448 None:intergenic
TTAACATTGTTAGGACTTGT+CGG 0.492019 8_4:-9058573 Msa1312140:CDS
CTGTTGATTCGATATTTCAC+CGG 0.495373 8_4:-9059568 Msa1312140:CDS
GTTTGTGCTACTCTTTCACT+TGG 0.496780 8_4:-9060144 Msa1312140:CDS
GGTTTAGAACCAATGGAAGT+TGG 0.498433 8_4:-9059110 Msa1312140:CDS
CTCTCAACGAATGTCCATCT+AGG 0.502870 8_4:+9059857 None:intergenic
GTTGATGAATCGAGCATGAC+CGG 0.505360 8_4:-9059835 Msa1312140:CDS
CGGTTGGTATGAACACAACA+TGG 0.507879 8_4:-9059717 Msa1312140:CDS
AATAAACTAACATCCTCAAT+CGG 0.510354 8_4:-9059631 Msa1312140:CDS
GTCAAAGAAGGTTGGTATGA+TGG 0.512824 8_4:-9060099 Msa1312140:CDS
AAGAAACTCCTTTGCAAACA+AGG 0.516856 8_4:-9059657 Msa1312140:CDS
GGGAATTGTTGGTGTGACAT+TGG 0.521518 8_4:-9057477 Msa1312140:CDS
GTGGTTCAAGTTTGTGAACA+AGG 0.521853 8_4:+9060602 None:intergenic
AGAACAATAGATTGTCATGA+AGG 0.524303 8_4:+9060518 None:intergenic
CTCTTATAACTAACATTATG+TGG 0.531696 8_4:-9057709 Msa1312140:CDS
CAAATTGATTTGGTTCGTAG+TGG 0.532205 8_4:-9059970 Msa1312140:CDS
AGTAATGGTTTATCTGAGAC+TGG 0.534339 8_4:+9057323 None:intergenic
AAAGTTACCGACGAAGAGCT+TGG 0.534806 8_4:-9058639 Msa1312140:CDS
GTCTTCACTCCTGGACGACA+TGG 0.535794 8_4:+9058540 None:intergenic
AACTCAAAGAAGAAAAGAAG+TGG 0.537966 8_4:-9058864 Msa1312140:CDS
AAAGAGCATGGAGTCAAAGA+AGG 0.538580 8_4:-9060111 Msa1312140:CDS
AGAAGAAGAATGTGTTTGAA+GGG 0.540107 8_4:-9057523 Msa1312140:CDS
AAAATGCTCGTTACATCGGT+TGG 0.541310 8_4:-9059733 Msa1312140:CDS
ATTGGTGCTTCAAGTTGTGA+TGG 0.541508 8_4:-9057459 Msa1312140:CDS
GTAGTTGCTGTAACCGGAGA+TGG 0.545548 8_4:-9058103 Msa1312140:CDS
CTTTCTGCATGTGAAACTAT+GGG 0.545575 8_4:-9059340 Msa1312140:CDS
CTTCACACACGAAGAGAGGT+TGG 0.545743 8_4:-9058212 Msa1312140:CDS
GGCTTTGGAATCAAAGAGCA+TGG 0.545764 8_4:-9060123 Msa1312140:CDS
TTGGCTTGGTTTAGAACCAA+TGG 0.546364 8_4:-9059117 Msa1312140:CDS
ACAACACAAACAATATAAGA+TGG 0.547366 8_4:-9060548 Msa1312140:CDS
ACATCCTCAATCGGAAAGGT+TGG 0.547400 8_4:-9059622 Msa1312140:CDS
ACAAATGAAACAGTGGTTGA+AGG 0.547600 8_4:-9058250 Msa1312140:CDS
ACTCACTTTGAATCAAATGA+AGG 0.553950 8_4:-9059150 Msa1312140:CDS
TTATTCAACCTTGTTTGCAA+AGG 0.556386 8_4:+9059649 None:intergenic
AAATTGATTTGGTTCGTAGT+GGG 0.562240 8_4:-9059969 Msa1312140:CDS
CTCTACATGATCGCTCTCAC+CGG 0.562804 8_4:+9059816 None:intergenic
TCCGGAACAAAAGTTGCCGA+TGG 0.563913 8_4:-9059763 Msa1312140:CDS
TTGGAAAGGAGCAGCAGAGA+TGG 0.565912 8_4:-9058799 Msa1312140:CDS
ATTAAGGATCCATGTCGTCC+AGG 0.566040 8_4:-9058549 Msa1312140:CDS
AGCATGGAGTCAAAGAAGGT+TGG 0.566589 8_4:-9060107 Msa1312140:CDS
TCTAGGAACAATCCATCGGC+TGG 0.567484 8_4:+9059874 None:intergenic
AGTTGAGAAAATCTCTGTGA+TGG 0.570853 8_4:-9058185 Msa1312140:CDS
TGTTGATTCGATATTTCACC+GGG 0.582880 8_4:-9059567 Msa1312140:CDS
AAAGAAGGTTGGTATGATGG+TGG 0.584489 8_4:-9060096 Msa1312140:CDS
GTTGAAGCTTGCCAACATGC+TGG 0.584909 8_4:-9058513 Msa1312140:CDS
TGTGAACAAGGGCATTGACA+TGG 0.585662 8_4:+9060614 None:intergenic
GCAACTTCACACACGAAGAG+AGG 0.586009 8_4:-9058216 Msa1312140:CDS
CAAACTATTGCACATTGGAA+AGG 0.587059 8_4:-9058813 Msa1312140:CDS
TGATCAATGGTAAAAGAATG+AGG 0.588924 8_4:+9060417 None:intergenic
ACTATTTGCACTGATAAGAC+AGG 0.589952 8_4:-9059307 Msa1312140:intron
GGGAACACGAAGACTGATAA+CGG 0.595313 8_4:-9059547 Msa1312140:CDS
TGACATTCACACCAGCATGT+TGG 0.604962 8_4:+9058502 None:intergenic
TTCAACTCCAAGCTCTTCGT+CGG 0.604998 8_4:+9058632 None:intergenic
TGGTTCAAGTTTGTGAACAA+GGG 0.619115 8_4:+9060603 None:intergenic
CAGCTAATGGCAAACCCTCA+GGG 0.620845 8_4:+9059425 None:intergenic
TGAAGGAGAGACAAACAAGA+TGG 0.622434 8_4:-9058613 Msa1312140:CDS
ACTAACATCCTCAATCGGAA+AGG 0.622770 8_4:-9059626 Msa1312140:CDS
TCCATCTAGGAACAATCCAT+CGG 0.623925 8_4:+9059870 None:intergenic
TGTTTAATGAGTTTAATGCA+AGG 0.630387 8_4:-9057553 Msa1312140:CDS
TGTCGTTGTTGCTATCCCTG+AGG 0.631694 8_4:-9059440 Msa1312140:CDS
GGTGATCAAGTACCAGCCGA+TGG 0.639660 8_4:-9059886 Msa1312140:CDS
GGTTGGTATGAACACAACAT+GGG 0.640345 8_4:-9059716 Msa1312140:CDS
ATAACCAAACTATTGCACAT+TGG 0.646246 8_4:-9058818 Msa1312140:CDS
ATAGTAACAGTTATAAATTG+GGG 0.650143 8_4:-9057962 Msa1312140:CDS
AAGATGGTGGTAAAAGACAA+TGG 0.652183 8_4:-9058597 Msa1312140:CDS
TCAAAATTCCACAACCATCG+TGG 0.657262 8_4:+9058754 None:intergenic
AATGATGACTGATCAAGCAA+TGG 0.658307 8_4:-9059371 Msa1312140:CDS
AGAAGTTTGCTAATACTGAG+AGG 0.658673 8_4:-9057424 Msa1312140:CDS
ATCAACCACGGTGAAAGATG+GGG 0.660270 8_4:+9060449 None:intergenic
TTGATGGATAAAGAACCTGT+TGG 0.661951 8_4:-9057743 Msa1312140:CDS
AATGCTTTCGAATTTCAACA+TGG 0.662441 8_4:+9058713 None:intergenic
ATGTTGGCAAGCTTCAACCG+CGG 0.662762 8_4:+9058518 None:intergenic
TTATAACTAACATTATGTGG+AGG 0.663994 8_4:-9057706 Msa1312140:CDS
ATTGACACACTTCAGAAACA+TGG 0.669798 8_4:-9060360 Msa1312140:CDS
AGGAGAGACAAACAAGATGG+TGG 0.673808 8_4:-9058610 Msa1312140:CDS
TCAGGACACAAATGAAACAG+TGG 0.673826 8_4:-9058257 Msa1312140:CDS
GTTGCTCTCAACACAACTGG+TGG 0.689491 8_4:-9059038 Msa1312140:CDS
AACGGAGTTAGAGAGTTCAA+CGG 0.695815 8_4:-9059529 Msa1312140:CDS
GTTGGTATGAACACAACATG+GGG 0.705560 8_4:-9059715 Msa1312140:CDS
ACCTACCCCATCTTTCACCG+TGG 0.707453 8_4:-9060454 Msa1312140:CDS
AGGTGAAGTTAAATCAACCA+CGG 0.715490 8_4:+9060437 None:intergenic
ATGTGTTCAAAATACCACGA+TGG 0.719605 8_4:-9058768 Msa1312140:CDS
AAAGCTATAGCATTTGAATG+CGG 0.720955 8_4:-9058295 Msa1312140:CDS
ACCACGGTGAAAGATGGGGT+AGG 0.724166 8_4:+9060453 None:intergenic
GACACACTTCAGAAACATGG+TGG 0.728054 8_4:-9060357 Msa1312140:CDS
ATCGAATCAACAGAACAACA+AGG 0.735048 8_4:+9059578 None:intergenic
CATTGAGAAGTGTCTCAATG+TGG 0.745193 8_4:+9060583 None:intergenic
TCGTCCAGGAGTGAAGACCG+CGG 0.774693 8_4:-9058535 Msa1312140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAACAATTCTTATTCTTT+TGG - chr8_4:9057738-9057757 Msa1312140:CDS 15.0%
!! TATAGTAACAGTTATAAATT+GGG - chr8_4:9059941-9059960 Msa1312140:CDS 15.0%
!! AAATTCAAAAAATCAAGTAA+TGG + chr8_4:9060599-9060618 None:intergenic 15.0%
!!! TACTTGATTTTTTGAATTTT+AGG - chr8_4:9060600-9060619 Msa1312140:CDS 15.0%
!! CAATGATATTCAAATTGATT+TGG - chr8_4:9057924-9057943 Msa1312140:CDS 20.0%
!!! TATCAAATATTGATACCTTT+TGG + chr8_4:9057966-9057985 None:intergenic 20.0%
!! TCAATATTTGATATTGTTGT+TGG - chr8_4:9057973-9057992 Msa1312140:CDS 20.0%
!! TGGTTAATTAACAATTAGTT+AGG + chr8_4:9059543-9059562 None:intergenic 20.0%
!! CTATAGTAACAGTTATAAAT+TGG - chr8_4:9059940-9059959 Msa1312140:CDS 20.0%
!! ATAGTAACAGTTATAAATTG+GGG - chr8_4:9059942-9059961 Msa1312140:CDS 20.0%
!! AATTTGATTATGGATACATT+AGG - chr8_4:9060101-9060120 Msa1312140:CDS 20.0%
! TCTTATATTGTTTGTGTTGT+TGG + chr8_4:9057356-9057375 None:intergenic 25.0%
! ACAACACAAACAATATAAGA+TGG - chr8_4:9057356-9057375 Msa1312140:CDS 25.0%
!! AAATGAAAGAAGCTTTTAGA+AGG + chr8_4:9057697-9057716 None:intergenic 25.0%
!!! TTTTGTTGTTGAAGCTTTTA+AGG - chr8_4:9057714-9057733 Msa1312140:CDS 25.0%
!!! TTTCATCCTTTTTTGTTTTC+CGG - chr8_4:9058123-9058142 Msa1312140:CDS 25.0%
! AATAAACTAACATCCTCAAT+CGG - chr8_4:9058273-9058292 Msa1312140:CDS 25.0%
!! TTTGGAATTGAAAATGGATA+TGG - chr8_4:9058973-9058992 Msa1312140:CDS 25.0%
!!! AATTTTGAAAGATCTTGACA+AGG - chr8_4:9059165-9059184 Msa1312140:intron 25.0%
!!! AAATTCGAAAGCATTATTCA+AGG - chr8_4:9059199-9059218 Msa1312140:intron 25.0%
! TCAGAGATTAAGTATGTTAA+TGG + chr8_4:9059563-9059582 None:intergenic 25.0%
!! ACCTTTTGATAAACTTCTAA+TGG - chr8_4:9059752-9059771 Msa1312140:CDS 25.0%
! ACCATTAGAAGTTTATCAAA+AGG + chr8_4:9059756-9059775 None:intergenic 25.0%
! GTTCAATGCTTAAAACAAAA+AGG - chr8_4:9059774-9059793 Msa1312140:CDS 25.0%
!! ACTAGTTATAAATTTTGTCG+CGG - chr8_4:9060028-9060047 Msa1312140:CDS 25.0%
! TAACAGCAGTTCAATTATTA+TGG - chr8_4:9060075-9060094 Msa1312140:CDS 25.0%
! AACAGCAGTTCAATTATTAT+GGG - chr8_4:9060076-9060095 Msa1312140:CDS 25.0%
! ATTATGGGTGAATTTGATTA+TGG - chr8_4:9060091-9060110 Msa1312140:CDS 25.0%
! CACATAATGTTAGTTATAAG+AGG + chr8_4:9060197-9060216 None:intergenic 25.0%
! CTCTTATAACTAACATTATG+TGG - chr8_4:9060195-9060214 Msa1312140:CDS 25.0%
! TTATAACTAACATTATGTGG+AGG - chr8_4:9060198-9060217 Msa1312140:CDS 25.0%
! GAGTCAACAAAATTACTATT+TGG + chr8_4:9060247-9060266 None:intergenic 25.0%
!! TTTAAAGGTGAGACTATTTT+TGG - chr8_4:9060272-9060291 Msa1312140:CDS 25.0%
! TGTTTAATGAGTTTAATGCA+AGG - chr8_4:9060351-9060370 Msa1312140:CDS 25.0%
!!! ATTTAAGAGCAAGTTGTTTT+TGG - chr8_4:9060406-9060425 Msa1312140:CDS 25.0%
!!! TTTAAGAGCAAGTTGTTTTT+GGG - chr8_4:9060407-9060426 Msa1312140:CDS 25.0%
AGAACAATAGATTGTCATGA+AGG + chr8_4:9057389-9057408 None:intergenic 30.0%
TCATGACAATCTATTGTTCT+AGG - chr8_4:9057389-9057408 Msa1312140:CDS 30.0%
CATGACAATCTATTGTTCTA+GGG - chr8_4:9057390-9057409 Msa1312140:CDS 30.0%
TGATCAATGGTAAAAGAATG+AGG + chr8_4:9057490-9057509 None:intergenic 30.0%
CTTAAAACTAACGTTGAGTT+TGG - chr8_4:9057592-9057611 Msa1312140:CDS 30.0%
!! AAATTGATTTGGTTCGTAGT+GGG - chr8_4:9057935-9057954 Msa1312140:CDS 30.0%
! CAAATATTGATACCTTTTGG+CGG + chr8_4:9057963-9057982 None:intergenic 30.0%
! GATGTTGTTTGTTTGAAGAT+TGG - chr8_4:9057997-9058016 Msa1312140:CDS 30.0%
TTTGTTCCGGAAAACAAAAA+AGG + chr8_4:9058132-9058151 None:intergenic 30.0%
! TTATTCAACCTTGTTTGCAA+AGG + chr8_4:9058258-9058277 None:intergenic 30.0%
TGTTACAAATCACATGATCA+AGG + chr8_4:9058729-9058748 None:intergenic 30.0%
! TTGATCATGTGATTTGTAAC+AGG - chr8_4:9058728-9058747 Msa1312140:CDS 30.0%
ACTCACTTTGAATCAAATGA+AGG - chr8_4:9058754-9058773 Msa1312140:CDS 30.0%
! AAATGAAGGTGACAAAGTTT+TGG - chr8_4:9058768-9058787 Msa1312140:CDS 30.0%
TTGATCAACTGAAGAACAAA+TGG + chr8_4:9058839-9058858 None:intergenic 30.0%
AACTCAAAGAAGAAAAGAAG+TGG - chr8_4:9059040-9059059 Msa1312140:CDS 30.0%
ATAACCAAACTATTGCACAT+TGG - chr8_4:9059086-9059105 Msa1312140:CDS 30.0%
AATGCTTTCGAATTTCAACA+TGG + chr8_4:9059194-9059213 None:intergenic 30.0%
GACAATGGTTTAACATTGTT+AGG - chr8_4:9059322-9059341 Msa1312140:CDS 30.0%
TTAACATTGTTAGGACTTGT+CGG - chr8_4:9059331-9059350 Msa1312140:CDS 30.0%
GTGAATGTCAAAATGATTAC+AGG - chr8_4:9059415-9059434 Msa1312140:CDS 30.0%
AAAGCTATAGCATTTGAATG+CGG - chr8_4:9059609-9059628 Msa1312140:CDS 30.0%
AATAATTGAACTGCTGTTAG+TGG + chr8_4:9060074-9060093 None:intergenic 30.0%
AAAACCAACTAAGGATTTGA+TGG - chr8_4:9060145-9060164 Msa1312140:CDS 30.0%
TTATCCATCAAATCCTTAGT+TGG + chr8_4:9060152-9060171 None:intergenic 30.0%
!! TTGTTGACTCTTCAGTTTAA+AGG - chr8_4:9060257-9060276 Msa1312140:CDS 30.0%
TGAGTTTAATGCAAGGAAAT+TGG - chr8_4:9060358-9060377 Msa1312140:CDS 30.0%
AGAAGAAGAATGTGTTTGAA+GGG - chr8_4:9060381-9060400 Msa1312140:CDS 30.0%
!!! AAGTTGTTTTTGGGAATTGT+TGG - chr8_4:9060416-9060435 Msa1312140:CDS 30.0%
AACTTCACAACAAAACCAAT+TGG + chr8_4:9060557-9060576 None:intergenic 30.0%
! TGGTTCAAGTTTGTGAACAA+GGG + chr8_4:9057304-9057323 None:intergenic 35.0%
! TTGTTTGTGTTGTTGGTGTT+TGG + chr8_4:9057349-9057368 None:intergenic 35.0%
!!! AGGTGTGATTTTTGGTTTCT+TGG + chr8_4:9057434-9057453 None:intergenic 35.0%
AGGTGAAGTTAAATCAACCA+CGG + chr8_4:9057470-9057489 None:intergenic 35.0%
TACGAGAGTTTCTTGATCAA+TGG + chr8_4:9057503-9057522 None:intergenic 35.0%
ATTGACACACTTCAGAAACA+TGG - chr8_4:9057544-9057563 Msa1312140:CDS 35.0%
TCAATTCGACAACAAGTGTT+TGG - chr8_4:9057649-9057668 Msa1312140:CDS 35.0%
!!! AGGTGGTTTTTTGTATGTGT+TGG + chr8_4:9057677-9057696 None:intergenic 35.0%
!! TGAAAGAAGCTTTTAGAAGG+TGG + chr8_4:9057694-9057713 None:intergenic 35.0%
!! CAAATTGATTTGGTTCGTAG+TGG - chr8_4:9057934-9057953 Msa1312140:CDS 35.0%
! GAGCATTTTTGCATATCCAT+CGG + chr8_4:9058160-9058179 None:intergenic 35.0%
TGCAAAAATGCTCGTTACAT+CGG - chr8_4:9058167-9058186 Msa1312140:CDS 35.0%
AAGAAACTCCTTTGCAAACA+AGG - chr8_4:9058247-9058266 Msa1312140:CDS 35.0%
ATCGAATCAACAGAACAACA+AGG + chr8_4:9058329-9058348 None:intergenic 35.0%
!! CTGTTGATTCGATATTTCAC+CGG - chr8_4:9058336-9058355 Msa1312140:intron 35.0%
!! TGTTGATTCGATATTTCACC+GGG - chr8_4:9058337-9058356 Msa1312140:intron 35.0%
GATGTGATGAATGCAGTTAT+TGG - chr8_4:9058417-9058436 Msa1312140:intron 35.0%
AATGATGACTGATCAAGCAA+TGG - chr8_4:9058533-9058552 Msa1312140:CDS 35.0%
ACTTTCTGCATGTGAAACTA+TGG - chr8_4:9058563-9058582 Msa1312140:CDS 35.0%
CTTTCTGCATGTGAAACTAT+GGG - chr8_4:9058564-9058583 Msa1312140:CDS 35.0%
! ACTATTTGCACTGATAAGAC+AGG - chr8_4:9058597-9058616 Msa1312140:CDS 35.0%
GTTCTTCAGTTGATCAAAGA+AGG - chr8_4:9058842-9058861 Msa1312140:CDS 35.0%
GGTGTTCACAAATTGAAATC+AGG - chr8_4:9058887-9058906 Msa1312140:CDS 35.0%
!! GATTCTGAATTCGAGTTTTC+AGG - chr8_4:9058914-9058933 Msa1312140:CDS 35.0%
GGAAAAAGCAATGCTATCTT+GGG - chr8_4:9058946-9058965 Msa1312140:CDS 35.0%
!!! GGCTGTTTTGGAATTGAAAA+TGG - chr8_4:9058967-9058986 Msa1312140:CDS 35.0%
!!! GAAGTGGAGTTTTGTTAAGA+AGG - chr8_4:9059056-9059075 Msa1312140:CDS 35.0%
CTTTCCAATGTGCAATAGTT+TGG + chr8_4:9059093-9059112 None:intergenic 35.0%
CAAACTATTGCACATTGGAA+AGG - chr8_4:9059091-9059110 Msa1312140:CDS 35.0%
ATGTGTTCAAAATACCACGA+TGG - chr8_4:9059136-9059155 Msa1312140:CDS 35.0%
!! CGAAAGCATTATTCAAGGTA+TGG - chr8_4:9059204-9059223 Msa1312140:intron 35.0%
! AAGATGGTGGTAAAAGACAA+TGG - chr8_4:9059307-9059326 Msa1312140:intron 35.0%
CATACTTAATCTCTGATGAC+AGG - chr8_4:9059567-9059586 Msa1312140:CDS 35.0%
GTTTCATTTGTGTCCTGATT+TGG + chr8_4:9059645-9059664 None:intergenic 35.0%
ACAAATGAAACAGTGGTTGA+AGG - chr8_4:9059654-9059673 Msa1312140:CDS 35.0%
AGTTGAGAAAATCTCTGTGA+TGG - chr8_4:9059719-9059738 Msa1312140:CDS 35.0%
ATATCAGCTTCTTTCAATGC+TGG + chr8_4:9059840-9059859 None:intergenic 35.0%
GCATTGAAAGAAGCTGATAT+TGG - chr8_4:9059840-9059859 Msa1312140:CDS 35.0%
! AGTTATAAATTTTGTCGCGG+CGG - chr8_4:9060031-9060050 Msa1312140:CDS 35.0%
TATGGATACATTAGGTGCAT+TGG - chr8_4:9060109-9060128 Msa1312140:CDS 35.0%
TGCAACTGAAAAACCAACTA+AGG - chr8_4:9060136-9060155 Msa1312140:CDS 35.0%
! TTGATGGATAAAGAACCTGT+TGG - chr8_4:9060161-9060180 Msa1312140:CDS 35.0%
!!! TATTTTTGGTGTGACTTCGA+AGG - chr8_4:9060286-9060305 Msa1312140:CDS 35.0%
GAGAAGAAGAATGTGTTTGA+AGG - chr8_4:9060380-9060399 Msa1312140:CDS 35.0%
!! AGAAGTTTGCTAATACTGAG+AGG - chr8_4:9060480-9060499 Msa1312140:CDS 35.0%
CTAATACTGAGAGGTTGAAT+TGG - chr8_4:9060489-9060508 Msa1312140:CDS 35.0%
!! AGAGAGTGGATTGTTTGTAT+TGG - chr8_4:9060512-9060531 Msa1312140:CDS 35.0%
! AGTAATGGTTTATCTGAGAC+TGG + chr8_4:9060584-9060603 None:intergenic 35.0%
! GTGGTTCAAGTTTGTGAACA+AGG + chr8_4:9057305-9057324 None:intergenic 40.0%
!! CATTGAGAAGTGTCTCAATG+TGG + chr8_4:9057324-9057343 None:intergenic 40.0%
AATCAACCACGGTGAAAGAT+GGG + chr8_4:9057459-9057478 None:intergenic 40.0%
AAATCAACCACGGTGAAAGA+TGG + chr8_4:9057460-9057479 None:intergenic 40.0%
! GTTTGTGCTACTCTTTCACT+TGG - chr8_4:9057760-9057779 Msa1312140:CDS 40.0%
! AAAGAGCATGGAGTCAAAGA+AGG - chr8_4:9057793-9057812 Msa1312140:CDS 40.0%
!! GTCAAAGAAGGTTGGTATGA+TGG - chr8_4:9057805-9057824 Msa1312140:CDS 40.0%
!! AAAGAAGGTTGGTATGATGG+TGG - chr8_4:9057808-9057827 Msa1312140:CDS 40.0%
TCCATCTAGGAACAATCCAT+CGG + chr8_4:9058037-9058056 None:intergenic 40.0%
AAAATGCTCGTTACATCGGT+TGG - chr8_4:9058171-9058190 Msa1312140:CDS 40.0%
! GGTTGGTATGAACACAACAT+GGG - chr8_4:9058188-9058207 Msa1312140:CDS 40.0%
GTTGGTATGAACACAACATG+GGG - chr8_4:9058189-9058208 Msa1312140:CDS 40.0%
TTCGTCAATGTCGTTGCTTA+TGG + chr8_4:9058229-9058248 None:intergenic 40.0%
ACTAACATCCTCAATCGGAA+AGG - chr8_4:9058278-9058297 Msa1312140:CDS 40.0%
AACGGAGTTAGAGAGTTCAA+CGG - chr8_4:9058375-9058394 Msa1312140:intron 40.0%
AGTGTCAATGTCACAGCTAA+TGG + chr8_4:9058495-9058514 None:intergenic 40.0%
!!! AAGGTGACAAAGTTTTGGCT+TGG - chr8_4:9058773-9058792 Msa1312140:CDS 40.0%
!! TTGGCTTGGTTTAGAACCAA+TGG - chr8_4:9058787-9058806 Msa1312140:CDS 40.0%
! GGTTTAGAACCAATGGAAGT+TGG - chr8_4:9058794-9058813 Msa1312140:CDS 40.0%
GAATATGCACCAACTTCCAT+TGG + chr8_4:9058806-9058825 None:intergenic 40.0%
!!! GATAGCATTGCTTTTTCCGT+CGG + chr8_4:9058944-9058963 None:intergenic 40.0%
CGGAAAAAGCAATGCTATCT+TGG - chr8_4:9058945-9058964 Msa1312140:CDS 40.0%
! AATGCTATCTTGGGCTGTTT+TGG - chr8_4:9058955-9058974 Msa1312140:CDS 40.0%
TCAAAATACCACGATGGTTG+TGG - chr8_4:9059142-9059161 Msa1312140:CDS 40.0%
TCAAAATTCCACAACCATCG+TGG + chr8_4:9059153-9059172 None:intergenic 40.0%
TGAAGGAGAGACAAACAAGA+TGG - chr8_4:9059291-9059310 Msa1312140:intron 40.0%
CGGAATTCTTCAACCAAATC+AGG - chr8_4:9059629-9059648 Msa1312140:CDS 40.0%
TCAGGACACAAATGAAACAG+TGG - chr8_4:9059647-9059666 Msa1312140:CDS 40.0%
TGCATCATTTGTTCCATCTC+CGG + chr8_4:9059817-9059836 None:intergenic 40.0%
AGCTGATATTGGACTCTCAA+TGG - chr8_4:9059851-9059870 Msa1312140:CDS 40.0%
GCTGATATTGGACTCTCAAT+GGG - chr8_4:9059852-9059871 Msa1312140:CDS 40.0%
!! ATTGGTGCTTCAAGTTGTGA+TGG - chr8_4:9060445-9060464 Msa1312140:CDS 40.0%
!!! TTGGTTTTGCTGCTGTTTCT+TGG - chr8_4:9060531-9060550 Msa1312140:CDS 40.0%
! GATGGGGTAGGTGTGATTTT+TGG + chr8_4:9057442-9057461 None:intergenic 45.0%
ATCAACCACGGTGAAAGATG+GGG + chr8_4:9057458-9057477 None:intergenic 45.0%
GACACACTTCAGAAACATGG+TGG - chr8_4:9057547-9057566 Msa1312140:CDS 45.0%
! CAGAAACATGGTGGAGTTGA+AGG - chr8_4:9057556-9057575 Msa1312140:CDS 45.0%
GCTACTCTTTCACTTGGCTT+TGG - chr8_4:9057766-9057785 Msa1312140:CDS 45.0%
!! GGCTTTGGAATCAAAGAGCA+TGG - chr8_4:9057781-9057800 Msa1312140:CDS 45.0%
AGCATGGAGTCAAAGAAGGT+TGG - chr8_4:9057797-9057816 Msa1312140:CDS 45.0%
CTCTCAACGAATGTCCATCT+AGG + chr8_4:9058050-9058069 None:intergenic 45.0%
! GTTGATGAATCGAGCATGAC+CGG - chr8_4:9058069-9058088 Msa1312140:CDS 45.0%
! TCCATCGGCAACTTTTGTTC+CGG + chr8_4:9058145-9058164 None:intergenic 45.0%
! CGGTTGGTATGAACACAACA+TGG - chr8_4:9058187-9058206 Msa1312140:CDS 45.0%
ACATCCTCAATCGGAAAGGT+TGG - chr8_4:9058282-9058301 Msa1312140:CDS 45.0%
CAAACCAACCTTTCCGATTG+AGG + chr8_4:9058289-9058308 None:intergenic 45.0%
! CTCAATCGGAAAGGTTGGTT+TGG - chr8_4:9058287-9058306 Msa1312140:CDS 45.0%
GTTATCAGTCTTCGTGTTCC+CGG + chr8_4:9058358-9058377 None:intergenic 45.0%
GGGAACACGAAGACTGATAA+CGG - chr8_4:9058357-9058376 Msa1312140:intron 45.0%
AAAGTTACCGACGAAGAGCT+TGG - chr8_4:9059265-9059284 Msa1312140:intron 45.0%
TTCAACTCCAAGCTCTTCGT+CGG + chr8_4:9059275-9059294 None:intergenic 45.0%
AGGAGAGACAAACAAGATGG+TGG - chr8_4:9059294-9059313 Msa1312140:intron 45.0%
GTTAGGACTTGTCGGCATTA+AGG - chr8_4:9059339-9059358 Msa1312140:CDS 45.0%
ATTAAGGATCCATGTCGTCC+AGG - chr8_4:9059355-9059374 Msa1312140:CDS 45.0%
TGACATTCACACCAGCATGT+TGG + chr8_4:9059405-9059424 None:intergenic 45.0%
GGACTCTCAATGGGAATTCA+AGG - chr8_4:9059861-9059880 Msa1312140:CDS 45.0%
! AAATTTTGTCGCGGCGGTTT+CGG - chr8_4:9060037-9060056 Msa1312140:CDS 45.0%
!! AGAGGCTTTGTTCTACCAAC+AGG + chr8_4:9060179-9060198 None:intergenic 45.0%
GGGAATTGTTGGTGTGACAT+TGG - chr8_4:9060427-9060446 Msa1312140:CDS 45.0%
AGAGGTTGAATTGGAGAGAG+TGG - chr8_4:9060498-9060517 Msa1312140:CDS 45.0%
TCTAGGAACAATCCATCGGC+TGG + chr8_4:9058033-9058052 None:intergenic 50.0%
!! GCCGATGGATTGTTCCTAGA+TGG - chr8_4:9058033-9058052 Msa1312140:CDS 50.0%
CTCTACATGATCGCTCTCAC+CGG + chr8_4:9058091-9058110 None:intergenic 50.0%
TCCGGAACAAAAGTTGCCGA+TGG - chr8_4:9058141-9058160 Msa1312140:CDS 50.0%
TGTCGTTGTTGCTATCCCTG+AGG - chr8_4:9058464-9058483 Msa1312140:intron 50.0%
GTCGTTGTTGCTATCCCTGA+GGG - chr8_4:9058465-9058484 Msa1312140:intron 50.0%
CAGCTAATGGCAAACCCTCA+GGG + chr8_4:9058482-9058501 None:intergenic 50.0%
ACAGCTAATGGCAAACCCTC+AGG + chr8_4:9058483-9058502 None:intergenic 50.0%
GGAGTTGCTCTCAACACAAC+TGG - chr8_4:9058863-9058882 Msa1312140:CDS 50.0%
GTTGCTCTCAACACAACTGG+TGG - chr8_4:9058866-9058885 Msa1312140:CDS 50.0%
!!! CGAGTTTTCAGGTAGTCCGA+CGG - chr8_4:9058925-9058944 Msa1312140:CDS 50.0%
TTGGAAAGGAGCAGCAGAGA+TGG - chr8_4:9059105-9059124 Msa1312140:CDS 50.0%
GACGAAGAGCTTGGAGTTGA+AGG - chr8_4:9059274-9059293 Msa1312140:intron 50.0%
ATGTTGGCAAGCTTCAACCG+CGG + chr8_4:9059389-9059408 None:intergenic 50.0%
GTTGAAGCTTGCCAACATGC+TGG - chr8_4:9059391-9059410 Msa1312140:CDS 50.0%
GCAACTTCACACACGAAGAG+AGG - chr8_4:9059688-9059707 Msa1312140:CDS 50.0%
CTTCACACACGAAGAGAGGT+TGG - chr8_4:9059692-9059711 Msa1312140:CDS 50.0%
GGTCACGTAGTTGCTGTAAC+CGG - chr8_4:9059795-9059814 Msa1312140:CDS 50.0%
GTAGTTGCTGTAACCGGAGA+TGG - chr8_4:9059801-9059820 Msa1312140:CDS 50.0%
!! GCTGCTGTTTCTTGGCCAAT+TGG - chr8_4:9060539-9060558 Msa1312140:CDS 50.0%
ACCTACCCCATCTTTCACCG+TGG - chr8_4:9057450-9057469 Msa1312140:CDS 55.0%
ACCACGGTGAAAGATGGGGT+AGG + chr8_4:9057454-9057473 None:intergenic 55.0%
GGTGATCAAGTACCAGCCGA+TGG - chr8_4:9058018-9058037 Msa1312140:CDS 55.0%
GTCTTCACTCCTGGACGACA+TGG + chr8_4:9059367-9059386 None:intergenic 55.0%
TCGTCCAGGAGTGAAGACCG+CGG - chr8_4:9059369-9059388 Msa1312140:CDS 60.0%
TCAACCGCGGTCTTCACTCC+TGG + chr8_4:9059376-9059395 None:intergenic 60.0%
!! TCGTAGTGGGCGCCGCCAAA+AGG - chr8_4:9057948-9057967 Msa1312140:CDS 65.0%
TTTGTCGCGGCGGTTTCGGC+AGG - chr8_4:9060041-9060060 Msa1312140:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 9057292 9060634 9057292 ID=Msa1312140;Name=Msa1312140
chr8_4 mRNA 9057292 9060634 9057292 ID=Msa1312140-mRNA-1;Parent=Msa1312140;Name=Msa1312140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0|1|1|1|3|0|1019
chr8_4 exon 9059308 9060634 9059308 ID=Msa1312140-mRNA-1:exon:3343;Parent=Msa1312140-mRNA-1
chr8_4 exon 9058490 9059176 9058490 ID=Msa1312140-mRNA-1:exon:3342;Parent=Msa1312140-mRNA-1
chr8_4 exon 9057292 9058337 9057292 ID=Msa1312140-mRNA-1:exon:3341;Parent=Msa1312140-mRNA-1
chr8_4 CDS 9059308 9060634 9059308 ID=Msa1312140-mRNA-1:cds;Parent=Msa1312140-mRNA-1
chr8_4 CDS 9058490 9059176 9058490 ID=Msa1312140-mRNA-1:cds;Parent=Msa1312140-mRNA-1
chr8_4 CDS 9057292 9058337 9057292 ID=Msa1312140-mRNA-1:cds;Parent=Msa1312140-mRNA-1
Gene Sequence

>Msa1312140

ATGTCAATGCCCTTGTTCACAAACTTGAACCACATTGAGACACTTCTCAATGCACCAAACACCAACAACACAAACAATATAAGATGGCACAATGCCTTCATGACAATCTATTGTTCTAGGGCTTTCATGTTACATTCTACCAAGAAACCAAAAATCACACCTACCCCATCTTTCACCGTGGTTGATTTAACTTCACCTCATTCTTTTACCATTGATCAAGAAACTCTCGTAGATATTGTCAAAGAGAAAAACATTGACACACTTCAGAAACATGGTGGAGTTGAAGGTGTTGCTTCATCACTTAAAACTAACGTTGAGTTTGGTCTCAAAAGTCATGATGATGATTTTCAAGACATTTCAATTCGACAACAAGTGTTTGGTTCCAACACATACAAAAAACCACCTTCTAAAAGCTTCTTTCATTTTGTTGTTGAAGCTTTTAAGGATTTAACAATTCTTATTCTTTTGGTTTGTGCTACTCTTTCACTTGGCTTTGGAATCAAAGAGCATGGAGTCAAAGAAGGTTGGTATGATGGTGGTAGCATTTTTCTAGCTGTTTTCATTGTTATAGCATTGTCTTCAATAAGCAACTTTAAACAAAACAAACAATTTGATAAATTGTCTCAAGTGAGCAATGATATTCAAATTGATTTGGTTCGTAGTGGGCGCCGCCAAAAGGTATCAATATTTGATATTGTTGTTGGTGATGTTGTTTGTTTGAAGATTGGTGATCAAGTACCAGCCGATGGATTGTTCCTAGATGGACATTCGTTGAGAGTTGATGAATCGAGCATGACCGGTGAGAGCGATCATGTAGAGATTAATCAAAACTTTCATCCTTTTTTGTTTTCCGGAACAAAAGTTGCCGATGGATATGCAAAAATGCTCGTTACATCGGTTGGTATGAACACAACATGGGGACAAATGATGAGTTCCATAAGCAACGACATTGACGAAGAAACTCCTTTGCAAACAAGGTTGAATAAACTAACATCCTCAATCGGAAAGGTTGGTTTGGTTGTCGCATTTTTAGTCCTTGTTGTTCTGTTGATTCGATATTTCACCGGGAACACGAAGACTGATAACGGAGTTAGAGAGTTCAACGGTAGAAAGACTAGTTTTGATGATGTGATGAATGCAGTTATTGGAATTATTGCTGATGCTGTTACTATTGTCGTTGTTGCTATCCCTGAGGGTTTGCCATTAGCTGTGACATTGACACTTGCTTATTCAATGAAGAAAATGATGACTGATCAAGCAATGGTGAGAAAACTTTCTGCATGTGAAACTATGGGATCAGCTACTACTATTTGCACTGATAAGACAGGTACACTCACTTTGAATCAAATGAAGGTGACAAAGTTTTGGCTTGGTTTAGAACCAATGGAAGTTGGTGCATATTCAAATGTTGATCCATTTGTTCTTCAGTTGATCAAAGAAGGAGTTGCTCTCAACACAACTGGTGGTGTTCACAAATTGAAATCAGGTTCTGATTCTGAATTCGAGTTTTCAGGTAGTCCGACGGAAAAAGCAATGCTATCTTGGGCTGTTTTGGAATTGAAAATGGATATGGAGCACTTGACAAAAAGTTGTTCTATTCTTCAAGTTGAGACTTTCAACTCAAAGAAGAAAAGAAGTGGAGTTTTGTTAAGAAGGAATGTCGATAACCAAACTATTGCACATTGGAAAGGAGCAGCAGAGATGGTACTAAGAATGTGTTCAAAATACCACGATGGTTGTGGAATTTTGAAAGATCTTGACAAGGAATCCATGTTGAAATTCGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATCGCTTTAGCGTATACAAAAGTTACCGACGAAGAGCTTGGAGTTGAAGGAGAGACAAACAAGATGGTGGTAAAAGACAATGGTTTAACATTGTTAGGACTTGTCGGCATTAAGGATCCATGTCGTCCAGGAGTGAAGACCGCGGTTGAAGCTTGCCAACATGCTGGTGTGAATGTCAAAATGATTACAGGTGACAATATTTTCACTGCAAAAGCTATAGCATTTGAATGCGGAATTCTTCAACCAAATCAGGACACAAATGAAACAGTGGTTGAAGGCGAACAATTTCGCAACTTCACACACGAAGAGAGGTTGGCGAAAGTTGAGAAAATCTCTGTGATGGCAAGATCTTCACCTTTTGATAAACTTCTAATGGTTCAATGCTTAAAACAAAAAGGTCACGTAGTTGCTGTAACCGGAGATGGAACAAATGATGCACCAGCATTGAAAGAAGCTGATATTGGACTCTCAATGGGAATTCAAGGTACTGAAGTAGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTATAAATTGGGGAAGATGTGTTTACAACAACATTCAAAAATTCATTCAATTTCAATTAACAGTGAATGTAGCAGCACTAGTTATAAATTTTGTCGCGGCGGTTTCGGCAGGCGAAGTTCCACTAACAGCAGTTCAATTATTATGGGTGAATTTGATTATGGATACATTAGGTGCATTGGCTCTTGCAACTGAAAAACCAACTAAGGATTTGATGGATAAAGAACCTGTTGGTAGAACAAAGCCTCTTATAACTAACATTATGTGGAGGAATCTTTTGTCACAAGCTTTGTACCAAATAGTAATTTTGTTGACTCTTCAGTTTAAAGGTGAGACTATTTTTGGTGTGACTTCGAAGGTAAATGACACATTGATATTCAATACATTTGTTCTTTGTCAAGTGTTTAATGAGTTTAATGCAAGGAAATTGGAGAAGAAGAATGTGTTTGAAGGGATATTTAAGAGCAAGTTGTTTTTGGGAATTGTTGGTGTGACATTGGTGCTTCAAGTTGTGATGGTTGAGTTTTTGAAGAAGTTTGCTAATACTGAGAGGTTGAATTGGAGAGAGTGGATTGTTTGTATTGGTTTTGCTGCTGTTTCTTGGCCAATTGGTTTTGTTGTGAAGTTTATACCAGTCTCAGATAAACCATTACTTGATTTTTTGAATTTTAGGAAGCGATATTGA
Protein sequence

>Msa1312140

MSMPLFTNLNHIETLLNAPNTNNTNNIRWHNAFMTIYCSRAFMLHSTKKPKITPTPSFTVVDLTSPHSFTIDQETLVDIVKEKNIDTLQKHGGVEGVASSLKTNVEFGLKSHDDDFQDISIRQQVFGSNTYKKPPSKSFFHFVVEAFKDLTILILLVCATLSLGFGIKEHGVKEGWYDGGSIFLAVFIVIALSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRQKVSIFDIVVGDVVCLKIGDQVPADGLFLDGHSLRVDESSMTGESDHVEINQNFHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISNDIDEETPLQTRLNKLTSSIGKVGLVVAFLVLVVLLIRYFTGNTKTDNGVREFNGRKTSFDDVMNAVIGIIADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMTDQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPMEVGAYSNVDPFVLQLIKEGVALNTTGGVHKLKSGSDSEFEFSGSPTEKAMLSWAVLELKMDMEHLTKSCSILQVETFNSKKKRSGVLLRRNVDNQTIAHWKGAAEMVLRMCSKYHDGCGILKDLDKESMLKFESIIQGMAASSLRCIALAYTKVTDEELGVEGETNKMVVKDNGLTLLGLVGIKDPCRPGVKTAVEACQHAGVNVKMITGDNIFTAKAIAFECGILQPNQDTNETVVEGEQFRNFTHEERLAKVEKISVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVINWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKDLMDKEPVGRTKPLITNIMWRNLLSQALYQIVILLTLQFKGETIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFKSKLFLGIVGVTLVLQVVMVEFLKKFANTERLNWREWIVCIGFAAVSWPIGFVVKFIPVSDKPLLDFLNFRKRY*