AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1180930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1180930 MtrunA17_Chr6g0456201 90.972 1019 89 3 1 1016 1 1019 0.0 1875
Msa1180930 MtrunA17_Chr7g0260401 67.958 955 291 7 71 1016 104 1052 0.0 1253
Msa1180930 MtrunA17_Chr8g0340261 92.496 573 25 2 447 1018 1 556 0.0 1078
Msa1180930 MtrunA17_Chr2g0298871 56.360 967 397 9 52 1008 123 1074 0.0 1031
Msa1180930 MtrunA17_Chr4g0002331 56.437 971 394 12 50 1008 133 1086 0.0 1020
Msa1180930 MtrunA17_Chr1g0173111 47.871 963 458 15 55 1003 79 1011 0.0 862
Msa1180930 MtrunA17_Chr8g0340271 93.435 457 24 1 1 457 1 451 0.0 858
Msa1180930 MtrunA17_Chr8g0382071 47.479 952 458 16 69 1006 94 1017 0.0 842
Msa1180930 MtrunA17_Chr4g0054021 48.276 957 461 14 56 1003 6 937 0.0 815
Msa1180930 MtrunA17_Chr5g0401211 47.482 973 471 16 41 1003 72 1014 0.0 803
Msa1180930 MtrunA17_Chr3g0134771 46.354 960 479 12 55 1003 82 1016 0.0 798
Msa1180930 MtrunA17_Chr4g0020551 46.339 874 427 14 69 927 27 873 0.0 747
Msa1180930 MtrunA17_Chr8g0355421 41.561 948 512 15 69 1003 87 1005 0.0 685
Msa1180930 MtrunA17_Chr4g0005551 30.807 1016 621 23 19 1003 3 967 1.20e-138 442
Msa1180930 MtrunA17_Chr5g0447521 33.295 874 526 16 151 1001 165 1004 1.19e-137 440
Msa1180930 MtrunA17_Chr2g0334231 51.095 411 189 3 40 450 106 504 4.96e-124 388
Msa1180930 MtrunA17_Chr7g0263361 33.103 870 451 29 101 880 38 866 8.66e-108 360
Msa1180930 MtrunA17_Chr8g0346461 31.688 871 472 25 105 884 30 868 8.08e-95 324
Msa1180930 MtrunA17_Chr3g0134951 29.930 862 506 20 95 889 3 833 1.57e-88 306
Msa1180930 MtrunA17_Chr2g0334221 52.174 299 135 6 468 763 43 336 2.51e-83 273
Msa1180930 MtrunA17_Chr2g0334201 55.621 169 70 1 845 1008 1 169 1.17e-61 207
Msa1180930 MtrunA17_Chr8g0381711 24.835 757 466 21 153 880 69 751 1.88e-47 183
Msa1180930 MtrunA17_Chr2g0298031 23.663 748 466 18 77 815 11 662 6.23e-47 182
Msa1180930 MtrunA17_Chr4g0065481 23.169 751 477 21 71 815 1 657 8.09e-47 182
Msa1180930 MtrunA17_Chr4g0072131 23.699 730 455 22 94 815 24 659 1.94e-46 181
Msa1180930 MtrunA17_Chr2g0304941 22.830 749 479 21 80 823 10 664 6.90e-45 175
Msa1180930 MtrunA17_Chr3g0138931 23.823 701 440 18 122 815 43 656 8.90e-45 175
Msa1180930 MtrunA17_Chr1g0148031 23.395 701 443 17 122 815 43 656 2.89e-44 174
Msa1180930 MtrunA17_Chr6g0452721 24.302 609 377 18 218 823 138 665 1.94e-43 171
Msa1180930 MtrunA17_Chr2g0333721 25.162 616 363 18 218 823 134 661 4.92e-43 170
Msa1180930 MtrunA17_Chr4g0059961 24.217 607 380 17 218 823 140 667 8.95e-43 169
Msa1180930 MtrunA17_Chr8g0365021 24.374 599 374 16 218 815 206 726 1.22e-42 169
Msa1180930 MtrunA17_Chr1g0147981 22.682 701 448 19 122 815 60 673 1.86e-41 165
Msa1180930 MtrunA17_Chr8g0335291 23.394 607 384 17 218 823 144 670 3.17e-38 154
Msa1180930 MtrunA17_Chr7g0276551 25.153 652 387 23 385 1018 42 610 1.48e-34 142
Msa1180930 MtrunA17_Chr5g0421231 73.750 80 21 0 520 599 279 358 7.46e-30 128
Msa1180930 MtrunA17_Chr4g0052521 24.185 583 325 19 243 818 465 937 1.76e-23 107
Msa1180930 MtrunA17_Chr3g0131151 24.012 683 385 25 174 778 217 843 5.91e-23 105
Msa1180930 MtrunA17_Chr2g0324791 21.066 788 459 22 211 857 98 863 2.62e-19 94.4
Msa1180930 MtrunA17_Chr2g0297051 30.808 198 103 4 623 820 808 971 2.62e-19 94.0
Msa1180930 MtrunA17_Chr8g0374331 29.508 183 97 3 638 820 42 192 8.47e-19 87.0
Msa1180930 MtrunA17_Chr8g0374391 29.508 183 97 3 638 820 35 185 2.83e-18 85.5
Msa1180930 MtrunA17_Chr5g0397621 30.000 190 97 5 611 797 664 820 1.25e-16 85.1
Msa1180930 MtrunA17_Chr8g0339181 29.858 211 108 5 629 838 751 922 5.97e-16 83.2
Msa1180930 MtrunA17_Chr4g0062251 23.733 434 238 17 500 854 555 974 6.25e-15 80.1
Msa1180930 MtrunA17_Chr5g0415271 21.481 675 367 24 184 716 92 745 3.01e-11 67.8
Msa1180930 MtrunA17_Chr8g0363911 28.571 203 111 6 533 716 578 765 5.09e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1180930 AT3G22910.1 68.043 1017 297 11 12 1017 17 1016 0.0 1316
Msa1180930 AT3G63380.1 65.672 1005 309 9 28 1012 27 1015 0.0 1272
Msa1180930 AT4G29900.1 57.024 961 388 9 69 1016 114 1062 0.0 1067
Msa1180930 AT4G29900.2 57.024 961 388 9 69 1016 114 1062 0.0 1067
Msa1180930 AT5G57110.1 56.341 962 401 8 64 1016 109 1060 0.0 1053
Msa1180930 AT5G57110.3 56.341 962 401 8 64 1016 109 1060 0.0 1053
Msa1180930 AT5G57110.2 56.341 962 401 8 64 1016 109 1060 0.0 1053
Msa1180930 AT3G21180.1 55.785 968 400 12 65 1016 124 1079 0.0 1014
Msa1180930 AT3G57330.1 47.330 955 467 12 56 1003 80 1005 0.0 856
Msa1180930 AT3G57330.2 47.330 955 467 12 56 1003 25 950 0.0 856
Msa1180930 AT2G41560.1 44.016 1011 520 14 6 1006 37 1011 0.0 833
Msa1180930 AT2G41560.2 46.162 938 466 13 79 1006 1 909 0.0 822
Msa1180930 AT2G41560.3 46.162 938 466 13 79 1006 1 909 0.0 822
Msa1180930 AT2G41560.4 46.162 938 466 13 79 1006 1 909 0.0 822
Msa1180930 AT1G27770.4 46.660 958 474 13 58 1003 85 1017 0.0 810
Msa1180930 AT1G27770.1 46.660 958 474 13 58 1003 85 1017 0.0 810
Msa1180930 AT1G27770.3 46.555 958 475 12 58 1003 22 954 0.0 808
Msa1180930 AT4G37640.1 46.875 960 475 14 55 1003 79 1014 0.0 786
Msa1180930 AT2G22950.1 46.979 960 475 14 55 1003 79 1015 0.0 782
Msa1180930 AT5G53010.1 38.200 911 481 21 69 950 140 997 1.69e-178 548
Msa1180930 AT5G53010.2 37.270 652 389 12 62 711 133 766 8.79e-125 399
Msa1180930 AT1G27770.2 40.275 581 317 10 55 621 82 646 1.17e-117 384
Msa1180930 AT1G27770.2 57.929 309 125 2 700 1003 635 943 1.31e-109 363
Msa1180930 AT1G07810.1 33.811 837 458 27 122 884 54 868 1.16e-107 360
Msa1180930 AT1G07670.2 33.811 837 458 27 122 884 54 868 1.72e-107 360
Msa1180930 AT1G07670.1 33.811 837 458 27 122 884 54 868 1.72e-107 360
Msa1180930 AT4G00900.2 33.333 858 463 26 94 867 14 846 4.18e-103 347
Msa1180930 AT4G00900.1 33.333 858 463 26 94 867 14 846 4.18e-103 347
Msa1180930 AT1G10130.1 28.410 975 553 25 122 994 32 963 1.11e-88 306
Msa1180930 AT3G60330.4 24.059 744 447 27 94 823 22 661 4.61e-46 180
Msa1180930 AT3G60330.3 24.059 744 447 27 94 823 22 661 4.61e-46 180
Msa1180930 AT3G60330.2 23.925 744 448 27 94 823 22 661 1.15e-45 179
Msa1180930 AT3G60330.1 23.925 744 448 27 94 823 22 661 1.15e-45 179
Msa1180930 AT3G42640.1 24.111 759 461 27 78 823 8 664 2.30e-45 177
Msa1180930 AT1G80660.2 24.473 617 366 18 218 823 10 537 3.47e-45 176
Msa1180930 AT1G80660.3 24.473 617 366 18 218 823 139 666 3.66e-45 177
Msa1180930 AT1G80660.1 24.473 617 366 18 218 823 139 666 3.72e-45 177
Msa1180930 AT1G80660.4 24.473 617 366 18 218 823 139 666 3.77e-45 177
Msa1180930 AT2G24520.2 25.801 593 357 17 225 815 188 699 4.43e-45 177
Msa1180930 AT2G24520.3 25.801 593 357 17 225 815 125 636 4.56e-45 176
Msa1180930 AT2G24520.1 25.801 593 357 17 225 815 125 636 4.56e-45 176
Msa1180930 AT2G07560.1 24.000 775 487 26 78 846 8 686 7.07e-45 176
Msa1180930 AT3G47950.1 23.994 621 364 20 218 823 142 669 2.55e-43 171
Msa1180930 AT3G47950.2 23.994 621 364 20 218 823 142 669 2.55e-43 171
Msa1180930 AT5G62670.1 23.849 608 381 16 218 823 138 665 3.16e-43 171
Msa1180930 AT4G30190.1 24.564 631 394 17 218 846 134 684 1.39e-42 169
Msa1180930 AT5G57350.4 24.338 604 368 17 218 815 135 655 3.59e-42 167
Msa1180930 AT5G57350.2 24.338 604 368 17 218 815 135 655 3.59e-42 167
Msa1180930 AT5G57350.1 24.338 604 368 17 218 815 135 655 3.59e-42 167
Msa1180930 AT2G18960.3 24.564 631 394 18 218 846 70 620 3.87e-42 167
Msa1180930 AT2G18960.2 24.564 631 394 18 218 846 70 620 3.87e-42 167
Msa1180930 AT1G17260.1 24.507 608 361 15 218 815 142 661 8.34e-42 166
Msa1180930 AT2G18960.1 24.564 631 394 18 218 846 134 684 8.84e-42 166
Msa1180930 AT4G30190.2 23.529 663 394 20 218 846 134 717 8.84e-39 157
Msa1180930 AT5G57350.3 24.480 433 273 11 385 815 13 393 6.67e-30 127
Msa1180930 AT2G24520.4 24.537 432 274 11 385 815 13 393 5.07e-29 124
Msa1180930 AT5G23630.1 23.169 669 381 21 174 765 217 829 4.31e-22 103
Msa1180930 AT1G63440.1 31.148 183 94 2 638 820 787 937 2.51e-19 94.7
Msa1180930 AT5G44790.1 31.683 202 105 4 619 820 780 948 8.83e-19 92.8
Msa1180930 AT4G11730.1 23.235 340 215 13 122 454 45 345 2.16e-17 88.2
Msa1180930 AT4G30110.1 28.302 212 112 5 635 846 508 679 8.35e-15 79.7
Msa1180930 AT4G30110.2 28.302 212 112 5 635 846 508 679 8.35e-15 79.7

Find 166 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACAACCATCATGGTATT+TGG 0.149166 8_1:-15180803 None:intergenic
TAACAGCAGTTCAATTATTA+TGG 0.156185 8_1:+15181731 Msa1180930:CDS
TTATTAACTCTTCAGTTTAA+AGG 0.186479 8_1:+15181913 Msa1180930:CDS
TCATGACAATCTATTGTTCT+AGG 0.188399 8_1:+15179054 Msa1180930:CDS
AATAATTGAACTGCTGTTAA+TGG 0.212762 8_1:-15181727 None:intergenic
TGAGTTTAATGCAAGGAAAT+TGG 0.225227 8_1:+15182014 Msa1180930:CDS
TCTTATATTGTTTGTGTTGT+TGG 0.228608 8_1:-15179018 None:intergenic
ATTATGGGTGAATTTGATTA+TGG 0.241738 8_1:+15181747 Msa1180930:CDS
CTATAGTAACAGTTATAAAT+TGG 0.242031 8_1:+15181596 Msa1180930:CDS
TTTAACAATTCTTATTCTTT+TGG 0.264806 8_1:+15179403 Msa1180930:CDS
AATACTATCTTGGGCTGTTT+TGG 0.272622 8_1:+15180615 Msa1180930:CDS
ACTTTCTGCATGTGAGACTA+TGG 0.281744 8_1:+15180228 Msa1180930:CDS
AAAACCTACTAAGGATTTAA+TGG 0.285321 8_1:+15181801 Msa1180930:CDS
TTTGGAATTGAAAATGGATA+TGG 0.303373 8_1:+15180633 Msa1180930:CDS
CAATGATATTCAAATTGATT+TGG 0.308945 8_1:+15179589 Msa1180930:CDS
GGTGTTCACAAATTGAATTC+AGG 0.308966 8_1:+15180547 Msa1180930:CDS
AAATGAAGGTGACAAAGTTT+TGG 0.310296 8_1:+15180428 Msa1180930:CDS
GTTATCAGTCTTCGTGTTCC+CGG 0.311426 8_1:-15180020 None:intergenic
GAGTTAATAAAATTACTATT+TGG 0.311758 8_1:-15181900 None:intergenic
GTTTCATTTGTGTCCTGATT+AGG 0.317439 8_1:-15181298 None:intergenic
TTCGTCAATGTCGTTGCTTA+TGG 0.324687 8_1:-15179891 None:intergenic
CTTTCCAATGTGAAACAGTT+TGG 0.327124 8_1:-15180750 None:intergenic
TCAAATAGTACCTGTCTTAT+CGG 0.329348 8_1:-15180272 None:intergenic
CAAATTTCAACATGGATTCA+TGG 0.334533 8_1:-15180843 None:intergenic
GCTGCTGTTTCTTGGCCAAT+TGG 0.334729 8_1:+15182195 Msa1180930:CDS
GCTACTCTTTCACTTGGCTT+TGG 0.339406 8_1:+15179431 Msa1180930:CDS
GTTAGGACTTGTCGGCATTA+AGG 0.342087 8_1:+15180996 Msa1180930:CDS
CTTAAAACTAACGTTGAGTT+TGG 0.343232 8_1:+15179257 Msa1180930:CDS
TTGATCAATTGAAGAACATA+TGG 0.343534 8_1:-15180496 None:intergenic
GACAATGGTTTAACATTGTT+AGG 0.351609 8_1:+15180979 Msa1180930:CDS
GTTCAATGCTTAAAAGAAAA+AGG 0.354812 8_1:+15181430 Msa1180930:CDS
TATAGTAACAGTTATAAATT+GGG 0.361053 8_1:+15181597 Msa1180930:CDS
CACATAATGTTAGTTATAAG+AGG 0.361954 8_1:-15181850 None:intergenic
CTAATACTGAGAGGTTGAAT+TGG 0.365165 8_1:+15182145 Msa1180930:CDS
GGTCACGTAGTTGCTGTAAC+TGG 0.372819 8_1:+15181451 Msa1180930:CDS
CGGAATTCTTCAACCTAATC+AGG 0.375327 8_1:+15181285 Msa1180930:CDS
AGCTGATATTGGACTTTCAA+TGG 0.376166 8_1:+15181507 Msa1180930:CDS
CTCAATCGGAAAGGTTGGTT+TGG 0.386409 8_1:+15179952 Msa1180930:CDS
AACAGCAGTTCAATTATTAT+GGG 0.388612 8_1:+15181732 Msa1180930:CDS
GATGTGATGAATGCAGTTAT+TGG 0.388736 8_1:+15180082 Msa1180930:CDS
AATTTGATTATGGATACATT+AGG 0.389466 8_1:+15181757 Msa1180930:CDS
TTGTTTGTGTTGTTGGTGTT+TGG 0.395216 8_1:-15179011 None:intergenic
TCAATTCGACAACAAGTGTT+TGG 0.401723 8_1:+15179314 Msa1180930:CDS
GATGTTGTTTGTTTGAAGAT+TGG 0.403237 8_1:+15179662 Msa1180930:CDS
GCCGATGGATTGTTCCTAGA+TGG 0.404691 8_1:+15179698 Msa1180930:CDS
TTATCCATTAAATCCTTAGT+AGG 0.405284 8_1:-15181805 None:intergenic
AGAGGCTTTGTTCTACCAAC+AGG 0.415046 8_1:-15181832 None:intergenic
GCATTGAAAGAAGCTGATAT+TGG 0.419377 8_1:+15181496 Msa1180930:CDS
CATGACAATCTATTGTTCTA+GGG 0.426996 8_1:+15179055 Msa1180930:CDS
CAAACCAACCTTTCCGATTG+AGG 0.434963 8_1:-15179951 None:intergenic
GGACTTTCAATGGGAATTCA+AGG 0.435159 8_1:+15181517 Msa1180930:CDS
GTGAATGTCAAAATGATTAC+AGG 0.438056 8_1:+15181072 Msa1180930:CDS
ACCATTAGAAGTTTATCAAA+AGG 0.438596 8_1:-15181409 None:intergenic
TATGAGAGTTTCTTGATCAA+TGG 0.439612 8_1:-15179165 None:intergenic
AGAGGTTGAATTGGAGAGAG+TGG 0.441904 8_1:+15182154 Msa1180930:CDS
GTTCTTCAATTGATCAAAGA+AGG 0.446882 8_1:+15180502 Msa1180930:CDS
TCAATATTTGATATTGTTGT+TGG 0.451599 8_1:+15179638 Msa1180930:CDS
CAGAAACATGGTGGAGTTGA+AGG 0.451952 8_1:+15179221 Msa1180930:CDS
GTCGTTGTTGCTATCCCTGA+GGG 0.454074 8_1:+15180130 Msa1180930:CDS
AACTTCACAACAAAACCAAT+TGG 0.455892 8_1:-15182210 None:intergenic
TCAAAATTTCACAACCATCA+TGG 0.460213 8_1:-15180810 None:intergenic
GAGAAGAAGAATGTGTTTGA+AGG 0.463945 8_1:+15182036 Msa1180930:CDS
TGAAAGCATTATTCAAGGTA+TGG 0.464548 8_1:+15180864 Msa1180930:CDS
AAATTTGAAAGCATTATTCA+AGG 0.465165 8_1:+15180859 Msa1180930:CDS
TTTGTCGCGGCGGTTTCAGC+AGG 0.465185 8_1:+15181697 Msa1180930:CDS
AGTGTCAATGTGACAGCTAA+TGG 0.468246 8_1:-15180157 None:intergenic
AGAGAGTGGATTGTTTGTAT+TGG 0.469398 8_1:+15182168 Msa1180930:CDS
TCAACCGCTGTCTTCACTCC+TGG 0.474177 8_1:-15181030 None:intergenic
TATGGATACATTAGGTGCAT+TGG 0.476382 8_1:+15181765 Msa1180930:CDS
GCTGATATTGGACTTTCAAT+GGG 0.477956 8_1:+15181508 Msa1180930:CDS
ACAGCTAATGGCAAACCCTC+AGG 0.482999 8_1:-15180145 None:intergenic
GAATATGCACCAACTTCCAT+TGG 0.484480 8_1:-15180463 None:intergenic
TTAACATTGTTAGGACTTGT+CGG 0.492019 8_1:+15180988 Msa1180930:CDS
AAAGTTACAGACGAAGAGCT+TGG 0.493916 8_1:+15180925 Msa1180930:CDS
AATCAACCACAGTGAAAGAT+GGG 0.494172 8_1:-15179121 None:intergenic
CTGTTGATTCGATATTTCAC+CGG 0.495373 8_1:+15180001 Msa1180930:CDS
GTTTGTGCTACTCTTTCACT+TGG 0.496780 8_1:+15179425 Msa1180930:CDS
AAATCAACCACAGTGAAAGA+TGG 0.497406 8_1:-15179122 None:intergenic
GGTTTAGAACCAATGGAAGT+TGG 0.498433 8_1:+15180454 Msa1180930:CDS
GGAGTTGCTCTAAATACTAC+TGG 0.498528 8_1:+15180523 Msa1180930:CDS
CTCTCAACGAATGTCCATCT+AGG 0.502870 8_1:-15179712 None:intergenic
GTTGATGAATCGAGCATGAC+CGG 0.505360 8_1:+15179734 Msa1180930:CDS
TCGAAGTGGGCGCCGACAAA+AGG 0.507237 8_1:+15179613 Msa1180930:CDS
CGGTTGGTATGAACACAACA+TGG 0.507879 8_1:+15179852 Msa1180930:CDS
AATAAACTAACATCCTCAAT+CGG 0.510354 8_1:+15179938 Msa1180930:CDS
GTCAAAGAAGGTTGGTATGA+TGG 0.512824 8_1:+15179470 Msa1180930:CDS
AAGAAACTCCTTTGCAAACA+AGG 0.516856 8_1:+15179912 Msa1180930:CDS
GTCTTCACTCCTGGACGACA+TGG 0.518276 8_1:-15181021 None:intergenic
GGGAATTGTTGGTGTGACAT+TGG 0.521518 8_1:+15182083 Msa1180930:CDS
GTGGTTCAAGTTTGTGAACA+AGG 0.521853 8_1:-15178967 None:intergenic
AGTAAAGGTTTGTCTGAGAC+TGG 0.521937 8_1:-15182237 None:intergenic
ATATCAGCTTCTTTCAATGC+CGG 0.524112 8_1:-15181493 None:intergenic
AGAACAATAGATTGTCATGA+AGG 0.524303 8_1:-15179051 None:intergenic
CTTCACGCACGAAGAGAGGT+TGG 0.525168 8_1:+15181348 Msa1180930:CDS
CTCTTATAACTAACATTATG+TGG 0.531696 8_1:+15181851 Msa1180930:CDS
ACAACCAAACTGTTTCACAT+TGG 0.535219 8_1:+15180746 Msa1180930:CDS
GCAACTTCACGCACGAAGAG+AGG 0.537170 8_1:+15181344 Msa1180930:CDS
AACTCAAAGAAGAAAAGAAG+TGG 0.537966 8_1:+15180700 Msa1180930:CDS
AAAGAGCATGGAGTCAAAGA+AGG 0.538580 8_1:+15179458 Msa1180930:CDS
AGAAGAAGAATGTGTTTGAA+GGG 0.540107 8_1:+15182037 Msa1180930:CDS
AAAATGCTCGTTACATCGGT+TGG 0.541310 8_1:+15179836 Msa1180930:CDS
ATTGGTGCTTCAAGTTGTGA+TGG 0.541508 8_1:+15182101 Msa1180930:CDS
GGCTTTGGAATCAAAGAGCA+TGG 0.545764 8_1:+15179446 Msa1180930:CDS
TTGGCTTGGTTTAGAACCAA+TGG 0.546364 8_1:+15180447 Msa1180930:CDS
ACAACACAAACAATATAAGA+TGG 0.547366 8_1:+15179021 Msa1180930:CDS
ACATCCTCAATCGGAAAGGT+TGG 0.547400 8_1:+15179947 Msa1180930:CDS
ACTCACTTTGAATCAAATGA+AGG 0.553950 8_1:+15180414 Msa1180930:CDS
TTATTCAACCTTGTTTGCAA+AGG 0.556386 8_1:-15179920 None:intergenic
GTAGTTGCTGTAACTGGAGA+TGG 0.559458 8_1:+15181457 Msa1180930:CDS
AGTTGAGAAAATCTCTGTGA+TGG 0.561269 8_1:+15181375 Msa1180930:CDS
CTTTCTGCATGTGAGACTAT+GGG 0.561453 8_1:+15180229 Msa1180930:CDS
ACAAATGAAACAGTGGTTGA+AGG 0.561818 8_1:+15181310 Msa1180930:CDS
TTATTCAATGAAGAAAATGA+TGG 0.562067 8_1:+15180183 Msa1180930:CDS
CAAATTGATTTGGTTCGAAG+TGG 0.562120 8_1:+15179599 Msa1180930:CDS
ACAGACGAAGAGCTTGGAGA+TGG 0.562863 8_1:+15180931 Msa1180930:CDS
TCCGGAACAAAAGTTGCCGA+TGG 0.563913 8_1:+15179806 Msa1180930:CDS
TTGGAAAGGAGCAGCAGAGA+TGG 0.565912 8_1:+15180765 Msa1180930:CDS
ATTAAGGATCCATGTCGTCC+AGG 0.566040 8_1:+15181012 Msa1180930:CDS
AGCATGGAGTCAAAGAAGGT+TGG 0.566589 8_1:+15179462 Msa1180930:CDS
TCTAGGAACAATCCATCGGC+TGG 0.567484 8_1:-15179695 None:intergenic
ACAATTTGCACCGATAAGAC+AGG 0.572673 8_1:+15180262 Msa1180930:CDS
ATTTCAATTAACAGTGAATG+TGG 0.574758 8_1:+15181657 Msa1180930:CDS
AAATTGATTTGGTTCGAAGT+GGG 0.582829 8_1:+15179600 Msa1180930:CDS
TGTTGATTCGATATTTCACC+GGG 0.582880 8_1:+15180002 Msa1180930:CDS
AAAGAAGGTTGGTATGATGG+TGG 0.584489 8_1:+15179473 Msa1180930:CDS
AAATTCAAGAAATCAAGTAA+AGG 0.584542 8_1:-15182252 None:intergenic
TGTGAACAAGGGCATTGACA+TGG 0.585662 8_1:-15178955 None:intergenic
TGATCAATGGTAAAAGAATG+AGG 0.588924 8_1:-15179152 None:intergenic
CTCTACATGATCACTCTCAC+CGG 0.592082 8_1:-15179753 None:intergenic
GGGAACACGAAGACTGATAA+CGG 0.595313 8_1:+15180022 Msa1180930:CDS
AGATGGAACAAATGATGCAC+CGG 0.596050 8_1:+15181474 Msa1180930:CDS
AGGTGCATTGGCTCTCGCAA+CGG 0.600700 8_1:+15181777 Msa1180930:CDS
GTTGAAGCTTGCCAACATGC+TGG 0.601597 8_1:+15181048 Msa1180930:CDS
CAAACTGTTTCACATTGGAA+AGG 0.603341 8_1:+15180751 Msa1180930:CDS
TGACATTCACACCAGCATGT+TGG 0.604962 8_1:-15181059 None:intergenic
TGGTTCAAGTTTGTGAACAA+GGG 0.619115 8_1:-15178966 None:intergenic
CAGCTAATGGCAAACCCTCA+GGG 0.620845 8_1:-15180144 None:intergenic
ACTAACATCCTCAATCGGAA+AGG 0.622770 8_1:+15179943 Msa1180930:CDS
TCCATCTAGGAACAATCCAT+CGG 0.623925 8_1:-15179699 None:intergenic
TGTTTAATGAGTTTAATGCA+AGG 0.630387 8_1:+15182007 Msa1180930:CDS
TGTCGTTGTTGCTATCCCTG+AGG 0.631694 8_1:+15180129 Msa1180930:CDS
AGATGGAGAGACGAACAAGA+TGG 0.639024 8_1:+15180948 Msa1180930:CDS
GGTGATCAAGTACCAGCCGA+TGG 0.639660 8_1:+15179683 Msa1180930:CDS
GGTTGGTATGAACACAACAT+GGG 0.640345 8_1:+15179853 Msa1180930:CDS
AATGCTTTCAAATTTCAACA+TGG 0.641477 8_1:-15180851 None:intergenic
ATGTGTTCCAAATACCATGA+TGG 0.646032 8_1:+15180796 Msa1180930:CDS
TTAATGGATAAAGAACCTGT+TGG 0.647999 8_1:+15181817 Msa1180930:CDS
ATAGTAACAGTTATAAATTG+GGG 0.650143 8_1:+15181598 Msa1180930:CDS
AAGATGGTGGTAAAAGACAA+TGG 0.652183 8_1:+15180964 Msa1180930:CDS
AGAAGTTTGCTAATACTGAG+AGG 0.658673 8_1:+15182136 Msa1180930:CDS
TTATAACTAACATTATGTGG+AGG 0.663994 8_1:+15181854 Msa1180930:CDS
TGGAGAGACGAACAAGATGG+TGG 0.667020 8_1:+15180951 Msa1180930:CDS
ATTGACACACTTCAGAAACA+TGG 0.669798 8_1:+15179209 Msa1180930:CDS
ACCTACCCCATCTTTCACTG+TGG 0.672694 8_1:+15179115 Msa1180930:CDS
TCAGGACACAAATGAAACAG+TGG 0.678564 8_1:+15181303 Msa1180930:CDS
AATGATGGCTGATCAAGCAA+TGG 0.680846 8_1:+15180198 Msa1180930:CDS
ATCAACCACAGTGAAAGATG+GGG 0.694996 8_1:-15179120 None:intergenic
AACGGAGTTAGAGAGTTCAA+CGG 0.695815 8_1:+15180040 Msa1180930:CDS
GTTGCTCTAAATACTACTGG+TGG 0.704322 8_1:+15180526 Msa1180930:CDS
GTTGGTATGAACACAACATG+GGG 0.705560 8_1:+15179854 Msa1180930:CDS
AAAGCTATAGCATTTGAATG+CGG 0.720955 8_1:+15181265 Msa1180930:CDS
ACCACAGTGAAAGATGGGGT+AGG 0.724166 8_1:-15179116 None:intergenic
GACACACTTCAGAAACATGG+TGG 0.728054 8_1:+15179212 Msa1180930:CDS
ATCGAATCAACAGAACAACA+AGG 0.735048 8_1:-15179991 None:intergenic
CATTGAGAAGTGTCTCAATG+TGG 0.745193 8_1:-15178986 None:intergenic
TCGTCCAGGAGTGAAGACAG+CGG 0.774137 8_1:+15181026 Msa1180930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAACAATTCTTATTCTTT+TGG + chr8_1:15179403-15179422 Msa1180930:CDS 15.0%
!! TATAGTAACAGTTATAAATT+GGG + chr8_1:15181597-15181616 Msa1180930:CDS 15.0%
!! GAGTTAATAAAATTACTATT+TGG - chr8_1:15181903-15181922 None:intergenic 15.0%
!! CAATGATATTCAAATTGATT+TGG + chr8_1:15179589-15179608 Msa1180930:CDS 20.0%
!! TCAATATTTGATATTGTTGT+TGG + chr8_1:15179638-15179657 Msa1180930:CDS 20.0%
!! TTATTCAATGAAGAAAATGA+TGG + chr8_1:15180183-15180202 Msa1180930:CDS 20.0%
!!! AAATTTGAAAGCATTATTCA+AGG + chr8_1:15180859-15180878 Msa1180930:CDS 20.0%
!! TGGTTAATTAACAATTAGTT+AGG - chr8_1:15181199-15181218 None:intergenic 20.0%
!! CTATAGTAACAGTTATAAAT+TGG + chr8_1:15181596-15181615 Msa1180930:CDS 20.0%
!! ATAGTAACAGTTATAAATTG+GGG + chr8_1:15181598-15181617 Msa1180930:CDS 20.0%
!! AATTTGATTATGGATACATT+AGG + chr8_1:15181757-15181776 Msa1180930:CDS 20.0%
!! TTATTAACTCTTCAGTTTAA+AGG + chr8_1:15181913-15181932 Msa1180930:CDS 20.0%
!! AAATTCAAGAAATCAAGTAA+AGG - chr8_1:15182255-15182274 None:intergenic 20.0%
!!! TACTTGATTTCTTGAATTTT+AGG + chr8_1:15182256-15182275 Msa1180930:CDS 20.0%
! TCTTATATTGTTTGTGTTGT+TGG - chr8_1:15179021-15179040 None:intergenic 25.0%
! ACAACACAAACAATATAAGA+TGG + chr8_1:15179021-15179040 Msa1180930:CDS 25.0%
!! AAATGAAAGAAGCTTTTAGA+AGG - chr8_1:15179362-15179381 None:intergenic 25.0%
!!! TTTTGTTGTTGAAGCTTTTA+AGG + chr8_1:15179379-15179398 Msa1180930:CDS 25.0%
!! CAAATATTGATACCTTTTGT+CGG - chr8_1:15179628-15179647 None:intergenic 25.0%
!!! TTTCATCCTTTTTTGTTTTC+CGG + chr8_1:15179788-15179807 Msa1180930:CDS 25.0%
! AATAAACTAACATCCTCAAT+CGG + chr8_1:15179938-15179957 Msa1180930:CDS 25.0%
!! TTGATCATGTGATTTGTAAT+AGG + chr8_1:15180388-15180407 Msa1180930:intron 25.0%
! TTGATCAATTGAAGAACATA+TGG - chr8_1:15180499-15180518 None:intergenic 25.0%
!!! ATAGTATTGCTTTTTCTGTT+GGG - chr8_1:15180603-15180622 None:intergenic 25.0%
! AGAAAAAGCAATACTATCTT+GGG + chr8_1:15180606-15180625 Msa1180930:CDS 25.0%
!! TTTGGAATTGAAAATGGATA+TGG + chr8_1:15180633-15180652 Msa1180930:CDS 25.0%
! AATGCTTTCAAATTTCAACA+TGG - chr8_1:15180854-15180873 None:intergenic 25.0%
! TCAGAGATAAAGTATGTTAA+TGG - chr8_1:15181219-15181238 None:intergenic 25.0%
!! TCCTTTTGATAAACTTCTAA+TGG + chr8_1:15181408-15181427 Msa1180930:CDS 25.0%
! ACCATTAGAAGTTTATCAAA+AGG - chr8_1:15181412-15181431 None:intergenic 25.0%
! GTTCAATGCTTAAAAGAAAA+AGG + chr8_1:15181430-15181449 Msa1180930:CDS 25.0%
! ATTTCAATTAACAGTGAATG+TGG + chr8_1:15181657-15181676 Msa1180930:CDS 25.0%
!!! ACTTGTTATAAATTTTGTCG+CGG + chr8_1:15181684-15181703 Msa1180930:CDS 25.0%
! AATAATTGAACTGCTGTTAA+TGG - chr8_1:15181730-15181749 None:intergenic 25.0%
! TAACAGCAGTTCAATTATTA+TGG + chr8_1:15181731-15181750 Msa1180930:CDS 25.0%
! AACAGCAGTTCAATTATTAT+GGG + chr8_1:15181732-15181751 Msa1180930:CDS 25.0%
! ATTATGGGTGAATTTGATTA+TGG + chr8_1:15181747-15181766 Msa1180930:CDS 25.0%
! AAAACCTACTAAGGATTTAA+TGG + chr8_1:15181801-15181820 Msa1180930:CDS 25.0%
! TTATCCATTAAATCCTTAGT+AGG - chr8_1:15181808-15181827 None:intergenic 25.0%
! CACATAATGTTAGTTATAAG+AGG - chr8_1:15181853-15181872 None:intergenic 25.0%
! CTCTTATAACTAACATTATG+TGG + chr8_1:15181851-15181870 Msa1180930:CDS 25.0%
! TTATAACTAACATTATGTGG+AGG + chr8_1:15181854-15181873 Msa1180930:CDS 25.0%
!! TTTAAAGGTGAGACTATTTT+TGG + chr8_1:15181928-15181947 Msa1180930:CDS 25.0%
! TGTTTAATGAGTTTAATGCA+AGG + chr8_1:15182007-15182026 Msa1180930:CDS 25.0%
!!! ATTTAAGAGCAAGTTGTTTT+TGG + chr8_1:15182062-15182081 Msa1180930:CDS 25.0%
!!! TTTAAGAGCAAGTTGTTTTT+GGG + chr8_1:15182063-15182082 Msa1180930:CDS 25.0%
AGAACAATAGATTGTCATGA+AGG - chr8_1:15179054-15179073 None:intergenic 30.0%
TCATGACAATCTATTGTTCT+AGG + chr8_1:15179054-15179073 Msa1180930:CDS 30.0%
CATGACAATCTATTGTTCTA+GGG + chr8_1:15179055-15179074 Msa1180930:CDS 30.0%
TGATCAATGGTAAAAGAATG+AGG - chr8_1:15179155-15179174 None:intergenic 30.0%
TATGAGAGTTTCTTGATCAA+TGG - chr8_1:15179168-15179187 None:intergenic 30.0%
CTTAAAACTAACGTTGAGTT+TGG + chr8_1:15179257-15179276 Msa1180930:CDS 30.0%
!! AAATTGATTTGGTTCGAAGT+GGG + chr8_1:15179600-15179619 Msa1180930:CDS 30.0%
! GATGTTGTTTGTTTGAAGAT+TGG + chr8_1:15179662-15179681 Msa1180930:CDS 30.0%
TTTGTTCCGGAAAACAAAAA+AGG - chr8_1:15179797-15179816 None:intergenic 30.0%
! TTATTCAACCTTGTTTGCAA+AGG - chr8_1:15179923-15179942 None:intergenic 30.0%
TCAAATAGTACCTGTCTTAT+CGG - chr8_1:15180275-15180294 None:intergenic 30.0%
ACTCACTTTGAATCAAATGA+AGG + chr8_1:15180414-15180433 Msa1180930:CDS 30.0%
! AAATGAAGGTGACAAAGTTT+TGG + chr8_1:15180428-15180447 Msa1180930:CDS 30.0%
GTTCTTCAATTGATCAAAGA+AGG + chr8_1:15180502-15180521 Msa1180930:CDS 30.0%
!!! GATAGTATTGCTTTTTCTGT+TGG - chr8_1:15180604-15180623 None:intergenic 30.0%
CAGAAAAAGCAATACTATCT+TGG + chr8_1:15180605-15180624 Msa1180930:CDS 30.0%
AACTCAAAGAAGAAAAGAAG+TGG + chr8_1:15180700-15180719 Msa1180930:CDS 30.0%
TCAAAATTTCACAACCATCA+TGG - chr8_1:15180813-15180832 None:intergenic 30.0%
CAAATTTCAACATGGATTCA+TGG - chr8_1:15180846-15180865 None:intergenic 30.0%
!! TGAAAGCATTATTCAAGGTA+TGG + chr8_1:15180864-15180883 Msa1180930:CDS 30.0%
GACAATGGTTTAACATTGTT+AGG + chr8_1:15180979-15180998 Msa1180930:CDS 30.0%
TTAACATTGTTAGGACTTGT+CGG + chr8_1:15180988-15181007 Msa1180930:CDS 30.0%
GTGAATGTCAAAATGATTAC+AGG + chr8_1:15181072-15181091 Msa1180930:CDS 30.0%
AAAGCTATAGCATTTGAATG+CGG + chr8_1:15181265-15181284 Msa1180930:CDS 30.0%
! TTAATGGATAAAGAACCTGT+TGG + chr8_1:15181817-15181836 Msa1180930:CDS 30.0%
TGAGTTTAATGCAAGGAAAT+TGG + chr8_1:15182014-15182033 Msa1180930:CDS 30.0%
AGAAGAAGAATGTGTTTGAA+GGG + chr8_1:15182037-15182056 Msa1180930:CDS 30.0%
!!! AAGTTGTTTTTGGGAATTGT+TGG + chr8_1:15182072-15182091 Msa1180930:CDS 30.0%
AACTTCACAACAAAACCAAT+TGG - chr8_1:15182213-15182232 None:intergenic 30.0%
! TGGTTCAAGTTTGTGAACAA+GGG - chr8_1:15178969-15178988 None:intergenic 35.0%
! TTGTTTGTGTTGTTGGTGTT+TGG - chr8_1:15179014-15179033 None:intergenic 35.0%
!!! AGGTGTGATTTTTGGTTTCT+TGG - chr8_1:15179099-15179118 None:intergenic 35.0%
AATCAACCACAGTGAAAGAT+GGG - chr8_1:15179124-15179143 None:intergenic 35.0%
AAATCAACCACAGTGAAAGA+TGG - chr8_1:15179125-15179144 None:intergenic 35.0%
ATTGACACACTTCAGAAACA+TGG + chr8_1:15179209-15179228 Msa1180930:CDS 35.0%
TCAATTCGACAACAAGTGTT+TGG + chr8_1:15179314-15179333 Msa1180930:CDS 35.0%
!!! AGGTGGTTTTTTGTATGTGT+TGG - chr8_1:15179342-15179361 None:intergenic 35.0%
!! TGAAAGAAGCTTTTAGAAGG+TGG - chr8_1:15179359-15179378 None:intergenic 35.0%
!! CAAATTGATTTGGTTCGAAG+TGG + chr8_1:15179599-15179618 Msa1180930:CDS 35.0%
! GAGCATTTTTGCATATCCAT+CGG - chr8_1:15179825-15179844 None:intergenic 35.0%
TGCAAAAATGCTCGTTACAT+CGG + chr8_1:15179832-15179851 Msa1180930:CDS 35.0%
AAGAAACTCCTTTGCAAACA+AGG + chr8_1:15179912-15179931 Msa1180930:CDS 35.0%
ATCGAATCAACAGAACAACA+AGG - chr8_1:15179994-15180013 None:intergenic 35.0%
!! CTGTTGATTCGATATTTCAC+CGG + chr8_1:15180001-15180020 Msa1180930:CDS 35.0%
!! TGTTGATTCGATATTTCACC+GGG + chr8_1:15180002-15180021 Msa1180930:CDS 35.0%
GATGTGATGAATGCAGTTAT+TGG + chr8_1:15180082-15180101 Msa1180930:CDS 35.0%
GGTGTTCACAAATTGAATTC+AGG + chr8_1:15180547-15180566 Msa1180930:CDS 35.0%
!! GATTCTGAATTCGAGTTTTC+AGG + chr8_1:15180574-15180593 Msa1180930:CDS 35.0%
! AATACTATCTTGGGCTGTTT+TGG + chr8_1:15180615-15180634 Msa1180930:CDS 35.0%
!!! GGCTGTTTTGGAATTGAAAA+TGG + chr8_1:15180627-15180646 Msa1180930:CDS 35.0%
!!! GAAGTGGAGTTTTGTTGAAA+AGG + chr8_1:15180716-15180735 Msa1180930:CDS 35.0%
ACAACCAAACTGTTTCACAT+TGG + chr8_1:15180746-15180765 Msa1180930:CDS 35.0%
CTTTCCAATGTGAAACAGTT+TGG - chr8_1:15180753-15180772 None:intergenic 35.0%
CAAACTGTTTCACATTGGAA+AGG + chr8_1:15180751-15180770 Msa1180930:CDS 35.0%
ATGTGTTCCAAATACCATGA+TGG + chr8_1:15180796-15180815 Msa1180930:CDS 35.0%
TTCACAACCATCATGGTATT+TGG - chr8_1:15180806-15180825 None:intergenic 35.0%
! AAGATGGTGGTAAAAGACAA+TGG + chr8_1:15180964-15180983 Msa1180930:CDS 35.0%
CATACTTTATCTCTGATGAC+AGG + chr8_1:15181223-15181242 Msa1180930:intron 35.0%
GTTTCATTTGTGTCCTGATT+AGG - chr8_1:15181301-15181320 None:intergenic 35.0%
ACAAATGAAACAGTGGTTGA+AGG + chr8_1:15181310-15181329 Msa1180930:CDS 35.0%
AGTTGAGAAAATCTCTGTGA+TGG + chr8_1:15181375-15181394 Msa1180930:CDS 35.0%
ATATCAGCTTCTTTCAATGC+CGG - chr8_1:15181496-15181515 None:intergenic 35.0%
GCATTGAAAGAAGCTGATAT+TGG + chr8_1:15181496-15181515 Msa1180930:CDS 35.0%
AGCTGATATTGGACTTTCAA+TGG + chr8_1:15181507-15181526 Msa1180930:CDS 35.0%
GCTGATATTGGACTTTCAAT+GGG + chr8_1:15181508-15181527 Msa1180930:CDS 35.0%
! TGTTATAAATTTTGTCGCGG+CGG + chr8_1:15181687-15181706 Msa1180930:CDS 35.0%
TATGGATACATTAGGTGCAT+TGG + chr8_1:15181765-15181784 Msa1180930:CDS 35.0%
!!! TATTTTTGGTGTGACTTCGA+AGG + chr8_1:15181942-15181961 Msa1180930:CDS 35.0%
GAGAAGAAGAATGTGTTTGA+AGG + chr8_1:15182036-15182055 Msa1180930:CDS 35.0%
!! AGAAGTTTGCTAATACTGAG+AGG + chr8_1:15182136-15182155 Msa1180930:CDS 35.0%
CTAATACTGAGAGGTTGAAT+TGG + chr8_1:15182145-15182164 Msa1180930:CDS 35.0%
!! AGAGAGTGGATTGTTTGTAT+TGG + chr8_1:15182168-15182187 Msa1180930:CDS 35.0%
! GTGGTTCAAGTTTGTGAACA+AGG - chr8_1:15178970-15178989 None:intergenic 40.0%
!! CATTGAGAAGTGTCTCAATG+TGG - chr8_1:15178989-15179008 None:intergenic 40.0%
ATCAACCACAGTGAAAGATG+GGG - chr8_1:15179123-15179142 None:intergenic 40.0%
! GTTTGTGCTACTCTTTCACT+TGG + chr8_1:15179425-15179444 Msa1180930:CDS 40.0%
! AAAGAGCATGGAGTCAAAGA+AGG + chr8_1:15179458-15179477 Msa1180930:CDS 40.0%
!! GTCAAAGAAGGTTGGTATGA+TGG + chr8_1:15179470-15179489 Msa1180930:CDS 40.0%
!! AAAGAAGGTTGGTATGATGG+TGG + chr8_1:15179473-15179492 Msa1180930:CDS 40.0%
TCCATCTAGGAACAATCCAT+CGG - chr8_1:15179702-15179721 None:intergenic 40.0%
AAAATGCTCGTTACATCGGT+TGG + chr8_1:15179836-15179855 Msa1180930:CDS 40.0%
! GGTTGGTATGAACACAACAT+GGG + chr8_1:15179853-15179872 Msa1180930:CDS 40.0%
GTTGGTATGAACACAACATG+GGG + chr8_1:15179854-15179873 Msa1180930:CDS 40.0%
TTCGTCAATGTCGTTGCTTA+TGG - chr8_1:15179894-15179913 None:intergenic 40.0%
ACTAACATCCTCAATCGGAA+AGG + chr8_1:15179943-15179962 Msa1180930:CDS 40.0%
AACGGAGTTAGAGAGTTCAA+CGG + chr8_1:15180040-15180059 Msa1180930:CDS 40.0%
AGTGTCAATGTGACAGCTAA+TGG - chr8_1:15180160-15180179 None:intergenic 40.0%
AATGATGGCTGATCAAGCAA+TGG + chr8_1:15180198-15180217 Msa1180930:CDS 40.0%
ACTTTCTGCATGTGAGACTA+TGG + chr8_1:15180228-15180247 Msa1180930:CDS 40.0%
CTTTCTGCATGTGAGACTAT+GGG + chr8_1:15180229-15180248 Msa1180930:CDS 40.0%
! ACAATTTGCACCGATAAGAC+AGG + chr8_1:15180262-15180281 Msa1180930:CDS 40.0%
!!! AAGGTGACAAAGTTTTGGCT+TGG + chr8_1:15180433-15180452 Msa1180930:CDS 40.0%
!! TTGGCTTGGTTTAGAACCAA+TGG + chr8_1:15180447-15180466 Msa1180930:CDS 40.0%
! GGTTTAGAACCAATGGAAGT+TGG + chr8_1:15180454-15180473 Msa1180930:CDS 40.0%
GAATATGCACCAACTTCCAT+TGG - chr8_1:15180466-15180485 None:intergenic 40.0%
! GGAGTTGCTCTAAATACTAC+TGG + chr8_1:15180523-15180542 Msa1180930:CDS 40.0%
! GTTGCTCTAAATACTACTGG+TGG + chr8_1:15180526-15180545 Msa1180930:CDS 40.0%
AAAGTTACAGACGAAGAGCT+TGG + chr8_1:15180925-15180944 Msa1180930:CDS 40.0%
CGGAATTCTTCAACCTAATC+AGG + chr8_1:15181285-15181304 Msa1180930:CDS 40.0%
TCAGGACACAAATGAAACAG+TGG + chr8_1:15181303-15181322 Msa1180930:CDS 40.0%
AGATGGAACAAATGATGCAC+CGG + chr8_1:15181474-15181493 Msa1180930:CDS 40.0%
GGACTTTCAATGGGAATTCA+AGG + chr8_1:15181517-15181536 Msa1180930:CDS 40.0%
!! ATTGGTGCTTCAAGTTGTGA+TGG + chr8_1:15182101-15182120 Msa1180930:CDS 40.0%
!!! TTGGTTTTGCTGCTGTTTCT+TGG + chr8_1:15182187-15182206 Msa1180930:CDS 40.0%
! AGTAAAGGTTTGTCTGAGAC+TGG - chr8_1:15182240-15182259 None:intergenic 40.0%
! GATGGGGTAGGTGTGATTTT+TGG - chr8_1:15179107-15179126 None:intergenic 45.0%
GACACACTTCAGAAACATGG+TGG + chr8_1:15179212-15179231 Msa1180930:CDS 45.0%
! CAGAAACATGGTGGAGTTGA+AGG + chr8_1:15179221-15179240 Msa1180930:CDS 45.0%
GCTACTCTTTCACTTGGCTT+TGG + chr8_1:15179431-15179450 Msa1180930:CDS 45.0%
!! GGCTTTGGAATCAAAGAGCA+TGG + chr8_1:15179446-15179465 Msa1180930:CDS 45.0%
AGCATGGAGTCAAAGAAGGT+TGG + chr8_1:15179462-15179481 Msa1180930:CDS 45.0%
CTCTCAACGAATGTCCATCT+AGG - chr8_1:15179715-15179734 None:intergenic 45.0%
! GTTGATGAATCGAGCATGAC+CGG + chr8_1:15179734-15179753 Msa1180930:CDS 45.0%
CTCTACATGATCACTCTCAC+CGG - chr8_1:15179756-15179775 None:intergenic 45.0%
! TCCATCGGCAACTTTTGTTC+CGG - chr8_1:15179810-15179829 None:intergenic 45.0%
! CGGTTGGTATGAACACAACA+TGG + chr8_1:15179852-15179871 Msa1180930:CDS 45.0%
ACATCCTCAATCGGAAAGGT+TGG + chr8_1:15179947-15179966 Msa1180930:CDS 45.0%
CAAACCAACCTTTCCGATTG+AGG - chr8_1:15179954-15179973 None:intergenic 45.0%
! CTCAATCGGAAAGGTTGGTT+TGG + chr8_1:15179952-15179971 Msa1180930:CDS 45.0%
GTTATCAGTCTTCGTGTTCC+CGG - chr8_1:15180023-15180042 None:intergenic 45.0%
GGGAACACGAAGACTGATAA+CGG + chr8_1:15180022-15180041 Msa1180930:CDS 45.0%
AGATGGAGAGACGAACAAGA+TGG + chr8_1:15180948-15180967 Msa1180930:CDS 45.0%
GTTAGGACTTGTCGGCATTA+AGG + chr8_1:15180996-15181015 Msa1180930:CDS 45.0%
ATTAAGGATCCATGTCGTCC+AGG + chr8_1:15181012-15181031 Msa1180930:CDS 45.0%
TGACATTCACACCAGCATGT+TGG - chr8_1:15181062-15181081 None:intergenic 45.0%
GTAGTTGCTGTAACTGGAGA+TGG + chr8_1:15181457-15181476 Msa1180930:CDS 45.0%
CGCAACGGAAAAACCTACTA+AGG + chr8_1:15181792-15181811 Msa1180930:CDS 45.0%
!! AGAGGCTTTGTTCTACCAAC+AGG - chr8_1:15181835-15181854 None:intergenic 45.0%
GGGAATTGTTGGTGTGACAT+TGG + chr8_1:15182083-15182102 Msa1180930:CDS 45.0%
AGAGGTTGAATTGGAGAGAG+TGG + chr8_1:15182154-15182173 Msa1180930:CDS 45.0%
ACCTACCCCATCTTTCACTG+TGG + chr8_1:15179115-15179134 Msa1180930:CDS 50.0%
ACCACAGTGAAAGATGGGGT+AGG - chr8_1:15179119-15179138 None:intergenic 50.0%
TCTAGGAACAATCCATCGGC+TGG - chr8_1:15179698-15179717 None:intergenic 50.0%
!! GCCGATGGATTGTTCCTAGA+TGG + chr8_1:15179698-15179717 Msa1180930:CDS 50.0%
TCCGGAACAAAAGTTGCCGA+TGG + chr8_1:15179806-15179825 Msa1180930:CDS 50.0%
TGTCGTTGTTGCTATCCCTG+AGG + chr8_1:15180129-15180148 Msa1180930:CDS 50.0%
GTCGTTGTTGCTATCCCTGA+GGG + chr8_1:15180130-15180149 Msa1180930:CDS 50.0%
CAGCTAATGGCAAACCCTCA+GGG - chr8_1:15180147-15180166 None:intergenic 50.0%
ACAGCTAATGGCAAACCCTC+AGG - chr8_1:15180148-15180167 None:intergenic 50.0%
TTGGAAAGGAGCAGCAGAGA+TGG + chr8_1:15180765-15180784 Msa1180930:CDS 50.0%
ACAGACGAAGAGCTTGGAGA+TGG + chr8_1:15180931-15180950 Msa1180930:CDS 50.0%
TGGAGAGACGAACAAGATGG+TGG + chr8_1:15180951-15180970 Msa1180930:CDS 50.0%
GTTGAAGCTTGCCAACATGC+TGG + chr8_1:15181048-15181067 Msa1180930:CDS 50.0%
GGTCACGTAGTTGCTGTAAC+TGG + chr8_1:15181451-15181470 Msa1180930:CDS 50.0%
!! GCTGCTGTTTCTTGGCCAAT+TGG + chr8_1:15182195-15182214 Msa1180930:CDS 50.0%
GGTGATCAAGTACCAGCCGA+TGG + chr8_1:15179683-15179702 Msa1180930:CDS 55.0%
GTCTTCACTCCTGGACGACA+TGG - chr8_1:15181024-15181043 None:intergenic 55.0%
TCGTCCAGGAGTGAAGACAG+CGG + chr8_1:15181026-15181045 Msa1180930:CDS 55.0%
TCAACCGCTGTCTTCACTCC+TGG - chr8_1:15181033-15181052 None:intergenic 55.0%
GCAACTTCACGCACGAAGAG+AGG + chr8_1:15181344-15181363 Msa1180930:CDS 55.0%
CTTCACGCACGAAGAGAGGT+TGG + chr8_1:15181348-15181367 Msa1180930:CDS 55.0%
!! AGGTGCATTGGCTCTCGCAA+CGG + chr8_1:15181777-15181796 Msa1180930:CDS 55.0%
!! TCGAAGTGGGCGCCGACAAA+AGG + chr8_1:15179613-15179632 Msa1180930:CDS 60.0%
TTTGTCGCGGCGGTTTCAGC+AGG + chr8_1:15181697-15181716 Msa1180930:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 15178957 15182290 15178957 ID=Msa1180930;Name=Msa1180930
chr8_1 mRNA 15178957 15182290 15178957 ID=Msa1180930-mRNA-1;Parent=Msa1180930;Name=Msa1180930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|3|0|1018
chr8_1 exon 15178957 15180283 15178957 ID=Msa1180930-mRNA-1:exon:5648;Parent=Msa1180930-mRNA-1
chr8_1 exon 15180410 15181093 15180410 ID=Msa1180930-mRNA-1:exon:5649;Parent=Msa1180930-mRNA-1
chr8_1 exon 15181245 15182290 15181245 ID=Msa1180930-mRNA-1:exon:5650;Parent=Msa1180930-mRNA-1
chr8_1 CDS 15178957 15180283 15178957 ID=Msa1180930-mRNA-1:cds;Parent=Msa1180930-mRNA-1
chr8_1 CDS 15180410 15181093 15180410 ID=Msa1180930-mRNA-1:cds;Parent=Msa1180930-mRNA-1
chr8_1 CDS 15181245 15182290 15181245 ID=Msa1180930-mRNA-1:cds;Parent=Msa1180930-mRNA-1
Gene Sequence

>Msa1180930

ATGTCAATGCCCTTGTTCACAAACTTGAACCACATTGAGACACTTCTCAATGCACCAAACACCAACAACACAAACAATATAAGATGGCACAATGCCTTCATGACAATCTATTGTTCTAGGGCTTTCATGTTACATTCTACCAAGAAACCAAAAATCACACCTACCCCATCTTTCACTGTGGTTGATTTAACTTCACCTCATTCTTTTACCATTGATCAAGAAACTCTCATAGATATTGTCAAAGAGAAAAACATTGACACACTTCAGAAACATGGTGGAGTTGAAGGTGTTGCTTCATCACTTAAAACTAACGTTGAGTTTGGTCTCAAAAGTCATGATGATGATTTTCAAGACATTTCAATTCGACAACAAGTGTTTGGTTCCAACACATACAAAAAACCACCTTCTAAAAGCTTCTTTCATTTTGTTGTTGAAGCTTTTAAGGATTTAACAATTCTTATTCTTTTGGTTTGTGCTACTCTTTCACTTGGCTTTGGAATCAAAGAGCATGGAGTCAAAGAAGGTTGGTATGATGGTGGTAGCATTTTTCTAGCTGTTTTCATTGTTATAGCATTGTCTTCAATAAGCAACTTTAAACAAAACAAACAATTTGATAAATTGTCTCAAGTGAGCAATGATATTCAAATTGATTTGGTTCGAAGTGGGCGCCGACAAAAGGTATCAATATTTGATATTGTTGTTGGTGATGTTGTTTGTTTGAAGATTGGTGATCAAGTACCAGCCGATGGATTGTTCCTAGATGGACATTCGTTGAGAGTTGATGAATCGAGCATGACCGGTGAGAGTGATCATGTAGAGATTAATCAAAACTTTCATCCTTTTTTGTTTTCCGGAACAAAAGTTGCCGATGGATATGCAAAAATGCTCGTTACATCGGTTGGTATGAACACAACATGGGGACAAATGATGAGTTCCATAAGCAACGACATTGACGAAGAAACTCCTTTGCAAACAAGGTTGAATAAACTAACATCCTCAATCGGAAAGGTTGGTTTGGTTGTCGCATTTTTAGTCCTTGTTGTTCTGTTGATTCGATATTTCACCGGGAACACGAAGACTGATAACGGAGTTAGAGAGTTCAACGGTAGAAAGACTAGTTTTGATGATGTGATGAATGCAGTTATTGGAATTATTGCTGATGCTGTTACTATTGTCGTTGTTGCTATCCCTGAGGGTTTGCCATTAGCTGTCACATTGACACTTGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCAATGGTGAGAAAACTTTCTGCATGTGAGACTATGGGATCAGCTACTACAATTTGCACCGATAAGACAGGTACACTCACTTTGAATCAAATGAAGGTGACAAAGTTTTGGCTTGGTTTAGAACCAATGGAAGTTGGTGCATATTCAAATGTTGATCCATATGTTCTTCAATTGATCAAAGAAGGAGTTGCTCTAAATACTACTGGTGGTGTTCACAAATTGAATTCAGGTTCTGATTCTGAATTCGAGTTTTCAGGTAGCCCAACAGAAAAAGCAATACTATCTTGGGCTGTTTTGGAATTGAAAATGGATATGGAGCACTTGACAAAAAGCTGTTCTATTCTTCAAGTTGAGACTTTCAACTCAAAGAAGAAAAGAAGTGGAGTTTTGTTGAAAAGGAATGTTGACAACCAAACTGTTTCACATTGGAAAGGAGCAGCAGAGATGGTACTAAGAATGTGTTCCAAATACCATGATGGTTGTGAAATTTTGAAAGATCTTGACCATGAATCCATGTTGAAATTTGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATCGCTTTAGCGTATAGAAAAGTTACAGACGAAGAGCTTGGAGATGGAGAGACGAACAAGATGGTGGTAAAAGACAATGGTTTAACATTGTTAGGACTTGTCGGCATTAAGGATCCATGTCGTCCAGGAGTGAAGACAGCGGTTGAAGCTTGCCAACATGCTGGTGTGAATGTCAAAATGATTACAGGTGACAATATTTTCACTGCAAAAGCTATAGCATTTGAATGCGGAATTCTTCAACCTAATCAGGACACAAATGAAACAGTGGTTGAAGGTGAACAATTTCGCAACTTCACGCACGAAGAGAGGTTGGAAAAAGTTGAGAAAATCTCTGTGATGGCAAGATCTTCTCCTTTTGATAAACTTCTAATGGTTCAATGCTTAAAAGAAAAAGGTCACGTAGTTGCTGTAACTGGAGATGGAACAAATGATGCACCGGCATTGAAAGAAGCTGATATTGGACTTTCAATGGGAATTCAAGGTACTGAAGTAGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTATAAATTGGGGAAGATGTGTTTACAACAACATTCAGAAATTCATTCAATTTCAATTAACAGTGAATGTGGCAGCACTTGTTATAAATTTTGTCGCGGCGGTTTCAGCAGGTGAAGTTCCATTAACAGCAGTTCAATTATTATGGGTGAATTTGATTATGGATACATTAGGTGCATTGGCTCTCGCAACGGAAAAACCTACTAAGGATTTAATGGATAAAGAACCTGTTGGTAGAACAAAGCCTCTTATAACTAACATTATGTGGAGGAATCTTTTGTCACAAGCTTTGTACCAAATAGTAATTTTATTAACTCTTCAGTTTAAAGGTGAGACTATTTTTGGTGTGACTTCGAAGGTAAATGACACATTGATATTCAATACATTTGTTCTTTGTCAAGTGTTTAATGAGTTTAATGCAAGGAAATTGGAGAAGAAGAATGTGTTTGAAGGGATATTTAAGAGCAAGTTGTTTTTGGGAATTGTTGGTGTGACATTGGTGCTTCAAGTTGTGATGGTTGAGTTTTTGAAGAAGTTTGCTAATACTGAGAGGTTGAATTGGAGAGAGTGGATTGTTTGTATTGGTTTTGCTGCTGTTTCTTGGCCAATTGGTTTTGTTGTGAAGTTTATACCAGTCTCAGACAAACCTTTACTTGATTTCTTGAATTTTAGGAAGAGATATTGA
Protein sequence

>Msa1180930

MSMPLFTNLNHIETLLNAPNTNNTNNIRWHNAFMTIYCSRAFMLHSTKKPKITPTPSFTVVDLTSPHSFTIDQETLIDIVKEKNIDTLQKHGGVEGVASSLKTNVEFGLKSHDDDFQDISIRQQVFGSNTYKKPPSKSFFHFVVEAFKDLTILILLVCATLSLGFGIKEHGVKEGWYDGGSIFLAVFIVIALSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRQKVSIFDIVVGDVVCLKIGDQVPADGLFLDGHSLRVDESSMTGESDHVEINQNFHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISNDIDEETPLQTRLNKLTSSIGKVGLVVAFLVLVVLLIRYFTGNTKTDNGVREFNGRKTSFDDVMNAVIGIIADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPMEVGAYSNVDPYVLQLIKEGVALNTTGGVHKLNSGSDSEFEFSGSPTEKAILSWAVLELKMDMEHLTKSCSILQVETFNSKKKRSGVLLKRNVDNQTVSHWKGAAEMVLRMCSKYHDGCEILKDLDHESMLKFESIIQGMAASSLRCIALAYRKVTDEELGDGETNKMVVKDNGLTLLGLVGIKDPCRPGVKTAVEACQHAGVNVKMITGDNIFTAKAIAFECGILQPNQDTNETVVEGEQFRNFTHEERLEKVEKISVMARSSPFDKLLMVQCLKEKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVINWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKDLMDKEPVGRTKPLITNIMWRNLLSQALYQIVILLTLQFKGETIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGIFKSKLFLGIVGVTLVLQVVMVEFLKKFANTERLNWREWIVCIGFAAVSWPIGFVVKFIPVSDKPLLDFLNFRKRY*