Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843700 | RHN55134.1 | 95.596 | 386 | 17 | 0 | 1 | 386 | 31 | 416 | 0.0 | 770 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843700 | A0A396HT76 | 95.596 | 386 | 17 | 0 | 1 | 386 | 31 | 416 | 0.0 | 770 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005260 | Msa0843700 | 0.811352 | 7.308273e-51 | -8.615850e-47 |
| Msa0051960 | Msa0843700 | 0.804191 | 2.431694e-49 | -8.615850e-47 |
| Msa0061220 | Msa0843700 | 0.813739 | 2.198120e-51 | -8.615850e-47 |
| Msa0094710 | Msa0843700 | 0.821822 | 3.291329e-53 | -8.615850e-47 |
| Msa0101960 | Msa0843700 | 0.806586 | 7.655455e-50 | -8.615850e-47 |
| Msa0104810 | Msa0843700 | 0.808275 | 3.355333e-50 | -8.615850e-47 |
| Msa0613150 | Msa0843700 | 0.803319 | 3.689943e-49 | -8.615850e-47 |
| Msa0715670 | Msa0843700 | 0.807852 | 4.127932e-50 | -8.615850e-47 |
| Msa0723580 | Msa0843700 | 0.846205 | 2.513345e-59 | -8.615850e-47 |
| Msa0734940 | Msa0843700 | 0.813423 | 2.579330e-51 | -8.615850e-47 |
| Msa0764070 | Msa0843700 | 0.834002 | 3.854877e-56 | -8.615850e-47 |
| Msa0804870 | Msa0843700 | 0.803186 | 3.931424e-49 | -8.615850e-47 |
| Msa0805890 | Msa0843700 | 0.800270 | 1.559201e-48 | -8.615850e-47 |
| Msa0383900 | Msa0843700 | 0.805996 | 1.019205e-49 | -8.615850e-47 |
| Msa0387040 | Msa0843700 | 0.801927 | 7.145971e-49 | -8.615850e-47 |
| Msa0393100 | Msa0843700 | 0.814483 | 1.505473e-51 | -8.615850e-47 |
| Msa0264680 | Msa0843700 | 0.828911 | 6.909764e-55 | -8.615850e-47 |
| Msa0265480 | Msa0843700 | 0.802714 | 4.921612e-49 | -8.615850e-47 |
| Msa0276430 | Msa0843700 | 0.832416 | 9.569574e-56 | -8.615850e-47 |
| Msa0302510 | Msa0843700 | 0.800456 | 1.429116e-48 | -8.615850e-47 |
| Msa0302730 | Msa0843700 | 0.811199 | 7.888624e-51 | -8.615850e-47 |
| Msa0306310 | Msa0843700 | 0.800274 | 1.556048e-48 | -8.615850e-47 |
| Msa0316470 | Msa0843700 | 0.817881 | 2.620367e-52 | -8.615850e-47 |
| Msa0335080 | Msa0843700 | 0.810652 | 1.036157e-50 | -8.615850e-47 |
| Msa0488580 | Msa0843700 | 0.819780 | 9.701774e-53 | -8.615850e-47 |
| Msa0588590 | Msa0843700 | 0.800932 | 1.142569e-48 | -8.615850e-47 |
| Msa0588710 | Msa0843700 | 0.810493 | 1.121608e-50 | -8.615850e-47 |
| Msa0592650 | Msa0843700 | 0.814702 | 1.346912e-51 | -8.615850e-47 |
| Msa0843700 | Msa1000800 | 0.817183 | 3.762551e-52 | -8.615850e-47 |
| Msa0843700 | Msa1011250 | 0.822803 | 1.948428e-53 | -8.615850e-47 |
| Msa0843700 | Msa1031460 | 0.829802 | 4.198915e-55 | -8.615850e-47 |
| Msa0843700 | Msa1058200 | 0.811719 | 6.083010e-51 | -8.615850e-47 |
| Msa0843700 | Msa1070540 | 0.828735 | 7.620549e-55 | -8.615850e-47 |
| Msa0843700 | Msa1101240 | 0.830021 | 3.713723e-55 | -8.615850e-47 |
| Msa0843700 | Msa1157110 | 0.801526 | 8.636451e-49 | -8.615850e-47 |
| Msa0843700 | Msa1188350 | 0.815970 | 7.035861e-52 | -8.615850e-47 |
| Msa0843700 | Msa1208990 | 0.822019 | 2.963655e-53 | -8.615850e-47 |
| Msa0843700 | Msa1221220 | 0.811258 | 7.660421e-51 | -8.615850e-47 |
| Msa0843700 | Msa1225580 | 0.817126 | 3.876459e-52 | -8.615850e-47 |
| Msa0843700 | Msa1246790 | 0.801771 | 7.693267e-49 | -8.615850e-47 |
| Msa0843700 | Msa1307530 | 0.800120 | 1.673112e-48 | -8.615850e-47 |
| Msa0843700 | Msa1312140 | 0.807517 | 4.862113e-50 | -8.615850e-47 |
| Msa0843700 | Msa1312440 | 0.806623 | 7.517710e-50 | -8.615850e-47 |
| Msa0843700 | Msa1355510 | 0.829882 | 4.013189e-55 | -8.615850e-47 |
| Msa0843700 | Msa1379020 | 0.808106 | 3.645687e-50 | -8.615850e-47 |
| Msa0843700 | Msa1397390 | 0.800098 | 1.689851e-48 | -8.615850e-47 |
| Msa0843700 | Msa1403690 | 0.804514 | 2.082786e-49 | -8.615850e-47 |
| Msa0843700 | Msa1407880 | 0.814080 | 1.848727e-51 | -8.615850e-47 |
| Msa0843700 | Msa1435320 | 0.803282 | 3.754683e-49 | -8.615850e-47 |
| Msa0843700 | Msa1443400 | 0.803554 | 3.297857e-49 | -8.615850e-47 |
| Msa0843700 | Msa1448040 | 0.803307 | 3.710322e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843700 | MtrunA17_Chr5g0414421 | 95.596 | 386 | 17 | 0 | 1 | 386 | 31 | 416 | 0.0 | 770 |
| Msa0843700 | MtrunA17_Chr5g0414371 | 88.342 | 386 | 38 | 1 | 1 | 386 | 1 | 379 | 0.0 | 703 |
| Msa0843700 | MtrunA17_Chr5g0414441 | 87.339 | 387 | 48 | 1 | 1 | 386 | 1 | 387 | 0.0 | 700 |
| Msa0843700 | MtrunA17_Chr5g0414391 | 83.505 | 388 | 55 | 2 | 1 | 386 | 1 | 381 | 0.0 | 657 |
| Msa0843700 | MtrunA17_Chr5g0414461 | 78.608 | 388 | 73 | 3 | 1 | 386 | 1 | 380 | 0.0 | 612 |
| Msa0843700 | MtrunA17_Chr0c01g0489311 | 51.478 | 406 | 170 | 12 | 1 | 386 | 1 | 399 | 1.13e-129 | 378 |
| Msa0843700 | MtrunA17_Chr6g0456421 | 43.243 | 407 | 201 | 10 | 1 | 386 | 1 | 398 | 2.58e-100 | 303 |
| Msa0843700 | MtrunA17_Chr5g0414451 | 86.869 | 99 | 13 | 0 | 121 | 219 | 1 | 99 | 1.28e-57 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0843700 | AT1G13480.1 | 44.472 | 398 | 198 | 10 | 1 | 386 | 1 | 387 | 4.19e-106 | 318 |
| Msa0843700 | AT1G13530.1 | 45.885 | 401 | 186 | 13 | 1 | 386 | 1 | 385 | 8.93e-104 | 311 |
| Msa0843700 | AT1G13510.1 | 45.113 | 399 | 187 | 13 | 1 | 386 | 1 | 380 | 2.33e-103 | 310 |
| Msa0843700 | AT1G13520.1 | 45.137 | 401 | 191 | 12 | 1 | 386 | 1 | 387 | 6.35e-103 | 310 |
| Msa0843700 | AT1G13490.2 | 45.729 | 398 | 188 | 10 | 1 | 386 | 1 | 382 | 1.70e-100 | 303 |
| Msa0843700 | AT1G13540.1 | 43.719 | 398 | 195 | 11 | 1 | 386 | 1 | 381 | 7.12e-100 | 301 |
| Msa0843700 | AT1G13470.1 | 46.465 | 396 | 184 | 13 | 1 | 386 | 1 | 378 | 1.73e-96 | 293 |
| Msa0843700 | AT1G13550.1 | 43.641 | 401 | 192 | 14 | 1 | 383 | 1 | 385 | 5.68e-95 | 289 |
| Msa0843700 | AT1G13500.1 | 44.417 | 403 | 190 | 15 | 1 | 386 | 1 | 386 | 8.85e-92 | 281 |
| Msa0843700 | AT1G13490.1 | 43.577 | 397 | 179 | 10 | 1 | 386 | 1 | 363 | 1.63e-91 | 280 |
| Msa0843700 | AT1G61600.1 | 38.642 | 427 | 215 | 9 | 1 | 386 | 1 | 421 | 5.29e-89 | 275 |
Find 92 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTAATGCTTGGCTTAAA+TGG | 0.196314 | 5_4:-21442818 | None:intergenic |
| CCTGGCTTATTAAGGGAAAA+AGG | 0.208156 | 5_4:+21442762 | Msa0843700:CDS |
| GAATTCCTCCTGGCTTATTA+AGG | 0.210362 | 5_4:+21442754 | Msa0843700:CDS |
| TTGAAGGAAAGGACGCTATT+TGG | 0.216758 | 5_4:+21443099 | Msa0843700:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5_4:-21442933 | None:intergenic |
| AAGATTGAAAAGTTGAAATT+TGG | 0.220039 | 5_4:-21442867 | None:intergenic |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5_4:+21442947 | Msa0843700:CDS |
| TCAGACACTCACATCAAATT+AGG | 0.281648 | 5_4:+21443384 | Msa0843700:CDS |
| GAGGAGAATGGATACAAAAT+TGG | 0.283501 | 5_4:+21443346 | Msa0843700:CDS |
| ATCACAAGATAACCTGAATT+TGG | 0.289417 | 5_4:-21442132 | None:intergenic |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5_4:+21443172 | Msa0843700:CDS |
| GCTCAAACTTACTCTTGTTT+TGG | 0.301630 | 5_4:+21442168 | Msa0843700:CDS |
| CCACCATCAGGGCCAAATTC+AGG | 0.344257 | 5_4:+21442120 | Msa0843700:CDS |
| TTAGCAACTTCTGTTTGAAT+AGG | 0.344922 | 5_4:-21443074 | None:intergenic |
| CACATCAAATTAGGAGCAAA+TGG | 0.354134 | 5_4:+21443393 | Msa0843700:CDS |
| TGAAGGAAAGGACGCTATTT+GGG | 0.357935 | 5_4:+21443100 | Msa0843700:CDS |
| TTGAAGGGCTCCAAAGCTAT+TGG | 0.369259 | 5_4:-21442663 | None:intergenic |
| AAAGTTGAAATTTGGTAGCT+TGG | 0.373273 | 5_4:-21442859 | None:intergenic |
| ATTCTTGATTCTATTGTCCT+TGG | 0.390390 | 5_4:-21442196 | None:intergenic |
| ACAAAAGTTGAAGAGTTTGA+TGG | 0.392275 | 5_4:+21443269 | Msa0843700:CDS |
| TTGGCTTAAATGGTAGTTGC+GGG | 0.394226 | 5_4:-21442808 | None:intergenic |
| CCTTTGAACTTGTATTAGCT+TGG | 0.394949 | 5_4:-21442590 | None:intergenic |
| AATTCCTCCTGGCTTATTAA+GGG | 0.397833 | 5_4:+21442755 | Msa0843700:CDS |
| GACAATGGTTGATTCAATAC+TGG | 0.398389 | 5_4:-21442321 | None:intergenic |
| TGATGTTAAACCAATAGCTT+TGG | 0.399590 | 5_4:+21442653 | Msa0843700:CDS |
| AAGTTATTCTTTGAGGAGAA+TGG | 0.403630 | 5_4:+21443334 | Msa0843700:CDS |
| GCCTCTGATGGAATTCCTCC+TGG | 0.425563 | 5_4:+21442744 | Msa0843700:CDS |
| TCATAGTTTAATTTACAAAT+CGG | 0.426523 | 5_4:+21442032 | Msa0843700:five_prime_UTR |
| CTTTCCAACAACCACTGATT+CGG | 0.426945 | 5_4:-21442901 | None:intergenic |
| GAAAGGTTTGGATGGAATGC+TGG | 0.429285 | 5_4:+21443224 | Msa0843700:CDS |
| TACCATTTAAGCCAAGCATT+AGG | 0.431877 | 5_4:+21442816 | Msa0843700:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5_4:+21442997 | Msa0843700:CDS |
| AAATGGGAACAAGAAAGGTT+TGG | 0.437035 | 5_4:+21443212 | Msa0843700:CDS |
| TATTTGGGATGAAAATAGAT+TGG | 0.437437 | 5_4:+21443115 | Msa0843700:CDS |
| TGGTTGAAAGTTATTCTTTG+AGG | 0.448102 | 5_4:+21443327 | Msa0843700:CDS |
| GCCCTTCAATGATTATCAAC+AGG | 0.448229 | 5_4:+21442677 | Msa0843700:CDS |
| ACAGAAGTTGCTAAGGTTGA+AGG | 0.453239 | 5_4:+21443083 | Msa0843700:CDS |
| CTTTCAGACCCACCACCATC+AGG | 0.453725 | 5_4:+21442108 | Msa0843700:CDS |
| TCAGGTGTAAATAGTCAAAC+AGG | 0.457058 | 5_4:+21442261 | Msa0843700:CDS |
| GGCTTCTTTCCATGTACAAA+AGG | 0.457238 | 5_4:+21442073 | Msa0843700:CDS |
| GCAAAATCCGTTGCCTCTGA+TGG | 0.460171 | 5_4:+21442732 | Msa0843700:CDS |
| AGAAGGAAGGGGAAATTTCA+AGG | 0.460902 | 5_4:+21442366 | Msa0843700:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5_4:+21443122 | Msa0843700:CDS |
| TACCTGTTGATAATCATTGA+AGG | 0.466990 | 5_4:-21442679 | None:intergenic |
| GAATTTGGCCCTGATGGTGG+TGG | 0.471784 | 5_4:-21442117 | None:intergenic |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5_4:+21443161 | Msa0843700:CDS |
| GTTTGGATGGAATGCTGGGA+AGG | 0.480324 | 5_4:+21443229 | Msa0843700:CDS |
| GTAACCATCAGTTATTCATC+AGG | 0.482475 | 5_4:+21442243 | Msa0843700:CDS |
| AATCATTTGAACCTAATGCT+TGG | 0.490134 | 5_4:-21442827 | None:intergenic |
| GAAATTTAGTTGTTATGTGC+TGG | 0.495601 | 5_4:+21443307 | Msa0843700:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5_4:+21442933 | Msa0843700:CDS |
| ATCGCTATTATGTTATAAGA+AGG | 0.507064 | 5_4:+21442349 | Msa0843700:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.507438 | 5_4:+21443230 | Msa0843700:CDS |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.518058 | 5_4:+21443032 | Msa0843700:CDS |
| GGGAACAAGAAAGGTTTGGA+TGG | 0.524181 | 5_4:+21443216 | Msa0843700:CDS |
| TAATACAAGTTCAAAGGAAG+AGG | 0.529363 | 5_4:+21442596 | Msa0843700:CDS |
| GAATGAAATGGGAACAAGAA+AGG | 0.531154 | 5_4:+21443207 | Msa0843700:CDS |
| TATTCAAACAGAAGTTGCTA+AGG | 0.531497 | 5_4:+21443076 | Msa0843700:CDS |
| ATTTGGTAGCTTGGAACGCA+AGG | 0.531864 | 5_4:-21442850 | None:intergenic |
| AGTTTGATGGAACAAACAAA+TGG | 0.536388 | 5_4:+21443282 | Msa0843700:CDS |
| ACATCAAATTAGGAGCAAAT+GGG | 0.536534 | 5_4:+21443394 | Msa0843700:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.541325 | 5_4:-21442116 | None:intergenic |
| ACCTGTTGATAATCATTGAA+GGG | 0.546054 | 5_4:-21442678 | None:intergenic |
| AGTTGTTGAGGGAATGAAAT+GGG | 0.546947 | 5_4:+21443196 | Msa0843700:CDS |
| CCAAGCTAATACAAGTTCAA+AGG | 0.554728 | 5_4:+21442590 | Msa0843700:CDS |
| CTATTATGTTATAAGAAGGA+AGG | 0.557905 | 5_4:+21442353 | Msa0843700:CDS |
| CTTGGCTTAAATGGTAGTTG+CGG | 0.559548 | 5_4:-21442809 | None:intergenic |
| TTGAGTTTGGAAGTTGTTGA+GGG | 0.559577 | 5_4:+21443185 | Msa0843700:CDS |
| AAAGGTTTGGATGGAATGCT+GGG | 0.561735 | 5_4:+21443225 | Msa0843700:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.563048 | 5_4:+21442904 | Msa0843700:CDS |
| TAACCTGAATTTGGCCCTGA+TGG | 0.566146 | 5_4:-21442123 | None:intergenic |
| TATTATGTTATAAGAAGGAA+GGG | 0.576465 | 5_4:+21442354 | Msa0843700:CDS |
| TAATGATTGTTCCGAATCAG+TGG | 0.577534 | 5_4:+21442890 | Msa0843700:CDS |
| TGTTCCGAATCAGTGGTTGT+TGG | 0.577833 | 5_4:+21442897 | Msa0843700:CDS |
| TACACCTGATGAATAACTGA+TGG | 0.584467 | 5_4:-21442247 | None:intergenic |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5_4:+21442929 | Msa0843700:CDS |
| AGGAATTCCATCAGAGGCAA+CGG | 0.588713 | 5_4:-21442739 | None:intergenic |
| GAACATAGCTTCTTCACTGT+GGG | 0.591417 | 5_4:-21442295 | None:intergenic |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.595211 | 5_4:+21443184 | Msa0843700:CDS |
| GAAGGAAGGGGAAATTTCAA+GGG | 0.598720 | 5_4:+21442367 | Msa0843700:CDS |
| AGTTGCTAAGGTTGAAGGAA+AGG | 0.599670 | 5_4:+21443088 | Msa0843700:CDS |
| GGTGGGTCTGAAAGAGCACT+AGG | 0.608877 | 5_4:-21442099 | None:intergenic |
| AAGTTGTTGAGGGAATGAAA+TGG | 0.611433 | 5_4:+21443195 | Msa0843700:CDS |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5_4:+21442998 | Msa0843700:CDS |
| CCTGAATTTGGCCCTGATGG+TGG | 0.613907 | 5_4:-21442120 | None:intergenic |
| TGGCTTAAATGGTAGTTGCG+GGG | 0.627549 | 5_4:-21442807 | None:intergenic |
| GCCAGGAGGAATTCCATCAG+AGG | 0.628216 | 5_4:-21442745 | None:intergenic |
| TTTCAGACCCACCACCATCA+GGG | 0.636827 | 5_4:+21442109 | Msa0843700:CDS |
| AAAACTACAACAAAAGCATG+TGG | 0.665724 | 5_4:-21442625 | None:intergenic |
| TGAACATAGCTTCTTCACTG+TGG | 0.668145 | 5_4:-21442296 | None:intergenic |
| ATTATGTTATAAGAAGGAAG+GGG | 0.668280 | 5_4:+21442355 | Msa0843700:CDS |
| TAATAGCGATTAGAAGACAA+TGG | 0.675741 | 5_4:-21442336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATAGTTTAATTTACAAAT+CGG | + | chr5_4:21442032-21442051 | Msa0843700:five_prime_UTR | 15.0% |
| !!! | AGACATAATTATATTTTTGT+TGG | + | chr5_4:21442468-21442487 | Msa0843700:intron | 15.0% |
| !!! | TCATAGTTTAATTTACAAAT+CGG | + | chr5_4:21442032-21442051 | Msa0843700:five_prime_UTR | 15.0% |
| !!! | AGACATAATTATATTTTTGT+TGG | + | chr5_4:21442468-21442487 | Msa0843700:intron | 15.0% |
| !! | TATTATGTTATAAGAAGGAA+GGG | + | chr5_4:21442354-21442373 | Msa0843700:CDS | 20.0% |
| !!! | GTTGATTTATAAAGTAATAG+AGG | + | chr5_4:21442528-21442547 | Msa0843700:intron | 20.0% |
| !! | GAAATAATCAAAAAAGGTTA+TGG | + | chr5_4:21442702-21442721 | Msa0843700:CDS | 20.0% |
| !! | AAGATTGAAAAGTTGAAATT+TGG | - | chr5_4:21442870-21442889 | None:intergenic | 20.0% |
| !!! | ATATTTTCAAAGGAAAATAG+TGG | + | chr5_4:21443026-21443045 | Msa0843700:CDS | 20.0% |
| !! | TATTATGTTATAAGAAGGAA+GGG | + | chr5_4:21442354-21442373 | Msa0843700:CDS | 20.0% |
| !!! | GTTGATTTATAAAGTAATAG+AGG | + | chr5_4:21442528-21442547 | Msa0843700:intron | 20.0% |
| !! | GAAATAATCAAAAAAGGTTA+TGG | + | chr5_4:21442702-21442721 | Msa0843700:CDS | 20.0% |
| !! | AAGATTGAAAAGTTGAAATT+TGG | - | chr5_4:21442870-21442889 | None:intergenic | 20.0% |
| !!! | ATATTTTCAAAGGAAAATAG+TGG | + | chr5_4:21443026-21443045 | Msa0843700:CDS | 20.0% |
| ! | ATCGCTATTATGTTATAAGA+AGG | + | chr5_4:21442349-21442368 | Msa0843700:CDS | 25.0% |
| ! | CTATTATGTTATAAGAAGGA+AGG | + | chr5_4:21442353-21442372 | Msa0843700:CDS | 25.0% |
| ! | ATTATGTTATAAGAAGGAAG+GGG | + | chr5_4:21442355-21442374 | Msa0843700:CDS | 25.0% |
| ! | TCATATTACAATTCTCTGTT+GGG | - | chr5_4:21442449-21442468 | None:intergenic | 25.0% |
| ! | TGGTAATTAGTTAACTTTCA+TGG | + | chr5_4:21442488-21442507 | Msa0843700:intron | 25.0% |
| ! | CATGGTTAAAGAAAAAGAAA+TGG | + | chr5_4:21442506-21442525 | Msa0843700:intron | 25.0% |
| ! | CAGGTAGAAATAATCAAAAA+AGG | + | chr5_4:21442696-21442715 | Msa0843700:CDS | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5_4:21442947-21442966 | Msa0843700:CDS | 25.0% |
| !! | TATTTGGGATGAAAATAGAT+TGG | + | chr5_4:21443115-21443134 | Msa0843700:CDS | 25.0% |
| ! | ATCGCTATTATGTTATAAGA+AGG | + | chr5_4:21442349-21442368 | Msa0843700:CDS | 25.0% |
| ! | CTATTATGTTATAAGAAGGA+AGG | + | chr5_4:21442353-21442372 | Msa0843700:CDS | 25.0% |
| ! | ATTATGTTATAAGAAGGAAG+GGG | + | chr5_4:21442355-21442374 | Msa0843700:CDS | 25.0% |
| ! | TCATATTACAATTCTCTGTT+GGG | - | chr5_4:21442449-21442468 | None:intergenic | 25.0% |
| ! | TGGTAATTAGTTAACTTTCA+TGG | + | chr5_4:21442488-21442507 | Msa0843700:intron | 25.0% |
| ! | CATGGTTAAAGAAAAAGAAA+TGG | + | chr5_4:21442506-21442525 | Msa0843700:intron | 25.0% |
| ! | CAGGTAGAAATAATCAAAAA+AGG | + | chr5_4:21442696-21442715 | Msa0843700:CDS | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5_4:21442947-21442966 | Msa0843700:CDS | 25.0% |
| !! | TATTTGGGATGAAAATAGAT+TGG | + | chr5_4:21443115-21443134 | Msa0843700:CDS | 25.0% |
| ATCACAAGATAACCTGAATT+TGG | - | chr5_4:21442135-21442154 | None:intergenic | 30.0% | |
| ATTCTTGATTCTATTGTCCT+TGG | - | chr5_4:21442199-21442218 | None:intergenic | 30.0% | |
| ! | ATGGTTACATTTTTGTTCTG+AGG | - | chr5_4:21442231-21442250 | None:intergenic | 30.0% |
| TAATAGCGATTAGAAGACAA+TGG | - | chr5_4:21442339-21442358 | None:intergenic | 30.0% | |
| CTCATATTACAATTCTCTGT+TGG | - | chr5_4:21442450-21442469 | None:intergenic | 30.0% | |
| TAATACAAGTTCAAAGGAAG+AGG | + | chr5_4:21442596-21442615 | Msa0843700:CDS | 30.0% | |
| ! | AAAACTACAACAAAAGCATG+TGG | - | chr5_4:21442628-21442647 | None:intergenic | 30.0% |
| TGATGTTAAACCAATAGCTT+TGG | + | chr5_4:21442653-21442672 | Msa0843700:CDS | 30.0% | |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5_4:21442681-21442700 | None:intergenic | 30.0% |
| !! | TACCTGTTGATAATCATTGA+AGG | - | chr5_4:21442682-21442701 | None:intergenic | 30.0% |
| AATCATTTGAACCTAATGCT+TGG | - | chr5_4:21442830-21442849 | None:intergenic | 30.0% | |
| ! | AAAGTTGAAATTTGGTAGCT+TGG | - | chr5_4:21442862-21442881 | None:intergenic | 30.0% |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5_4:21442929-21442948 | Msa0843700:CDS | 30.0% | |
| ! | ATGGGAGAAGATATTTTCAA+AGG | + | chr5_4:21443016-21443035 | Msa0843700:CDS | 30.0% |
| TTAGCAACTTCTGTTTGAAT+AGG | - | chr5_4:21443077-21443096 | None:intergenic | 30.0% | |
| TATTCAAACAGAAGTTGCTA+AGG | + | chr5_4:21443076-21443095 | Msa0843700:CDS | 30.0% | |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5_4:21443122-21443141 | Msa0843700:CDS | 30.0% |
| ACAAAAGTTGAAGAGTTTGA+TGG | + | chr5_4:21443269-21443288 | Msa0843700:CDS | 30.0% | |
| AGTTTGATGGAACAAACAAA+TGG | + | chr5_4:21443282-21443301 | Msa0843700:CDS | 30.0% | |
| GAAATTTAGTTGTTATGTGC+TGG | + | chr5_4:21443307-21443326 | Msa0843700:CDS | 30.0% | |
| TGGTTGAAAGTTATTCTTTG+AGG | + | chr5_4:21443327-21443346 | Msa0843700:CDS | 30.0% | |
| ! | AAGTTATTCTTTGAGGAGAA+TGG | + | chr5_4:21443334-21443353 | Msa0843700:CDS | 30.0% |
| ACATCAAATTAGGAGCAAAT+GGG | + | chr5_4:21443394-21443413 | Msa0843700:CDS | 30.0% | |
| ATCACAAGATAACCTGAATT+TGG | - | chr5_4:21442135-21442154 | None:intergenic | 30.0% | |
| ATTCTTGATTCTATTGTCCT+TGG | - | chr5_4:21442199-21442218 | None:intergenic | 30.0% | |
| ! | ATGGTTACATTTTTGTTCTG+AGG | - | chr5_4:21442231-21442250 | None:intergenic | 30.0% |
| TAATAGCGATTAGAAGACAA+TGG | - | chr5_4:21442339-21442358 | None:intergenic | 30.0% | |
| CTCATATTACAATTCTCTGT+TGG | - | chr5_4:21442450-21442469 | None:intergenic | 30.0% | |
| TAATACAAGTTCAAAGGAAG+AGG | + | chr5_4:21442596-21442615 | Msa0843700:CDS | 30.0% | |
| ! | AAAACTACAACAAAAGCATG+TGG | - | chr5_4:21442628-21442647 | None:intergenic | 30.0% |
| TGATGTTAAACCAATAGCTT+TGG | + | chr5_4:21442653-21442672 | Msa0843700:CDS | 30.0% | |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5_4:21442681-21442700 | None:intergenic | 30.0% |
| !! | TACCTGTTGATAATCATTGA+AGG | - | chr5_4:21442682-21442701 | None:intergenic | 30.0% |
| AATCATTTGAACCTAATGCT+TGG | - | chr5_4:21442830-21442849 | None:intergenic | 30.0% | |
| ! | AAAGTTGAAATTTGGTAGCT+TGG | - | chr5_4:21442862-21442881 | None:intergenic | 30.0% |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5_4:21442929-21442948 | Msa0843700:CDS | 30.0% | |
| ! | ATGGGAGAAGATATTTTCAA+AGG | + | chr5_4:21443016-21443035 | Msa0843700:CDS | 30.0% |
| TTAGCAACTTCTGTTTGAAT+AGG | - | chr5_4:21443077-21443096 | None:intergenic | 30.0% | |
| TATTCAAACAGAAGTTGCTA+AGG | + | chr5_4:21443076-21443095 | Msa0843700:CDS | 30.0% | |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5_4:21443122-21443141 | Msa0843700:CDS | 30.0% |
| ACAAAAGTTGAAGAGTTTGA+TGG | + | chr5_4:21443269-21443288 | Msa0843700:CDS | 30.0% | |
| AGTTTGATGGAACAAACAAA+TGG | + | chr5_4:21443282-21443301 | Msa0843700:CDS | 30.0% | |
| GAAATTTAGTTGTTATGTGC+TGG | + | chr5_4:21443307-21443326 | Msa0843700:CDS | 30.0% | |
| TGGTTGAAAGTTATTCTTTG+AGG | + | chr5_4:21443327-21443346 | Msa0843700:CDS | 30.0% | |
| ! | AAGTTATTCTTTGAGGAGAA+TGG | + | chr5_4:21443334-21443353 | Msa0843700:CDS | 30.0% |
| ACATCAAATTAGGAGCAAAT+GGG | + | chr5_4:21443394-21443413 | Msa0843700:CDS | 30.0% | |
| CGGTAAAAATGTATGCAACA+AGG | + | chr5_4:21442052-21442071 | Msa0843700:exon | 35.0% | |
| ! | ACTAGGATTCCTTTTGTACA+TGG | - | chr5_4:21442085-21442104 | None:intergenic | 35.0% |
| !! | GCTCAAACTTACTCTTGTTT+TGG | + | chr5_4:21442168-21442187 | Msa0843700:CDS | 35.0% |
| !!! | ACATTTTTGTTCTGAGGTAG+AGG | - | chr5_4:21442225-21442244 | None:intergenic | 35.0% |
| GTAACCATCAGTTATTCATC+AGG | + | chr5_4:21442243-21442262 | Msa0843700:CDS | 35.0% | |
| TACACCTGATGAATAACTGA+TGG | - | chr5_4:21442250-21442269 | None:intergenic | 35.0% | |
| TCAGGTGTAAATAGTCAAAC+AGG | + | chr5_4:21442261-21442280 | Msa0843700:CDS | 35.0% | |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5_4:21442324-21442343 | None:intergenic | 35.0% |
| CCTTTGAACTTGTATTAGCT+TGG | - | chr5_4:21442593-21442612 | None:intergenic | 35.0% | |
| CCAAGCTAATACAAGTTCAA+AGG | + | chr5_4:21442590-21442609 | Msa0843700:CDS | 35.0% | |
| AATTCCTCCTGGCTTATTAA+GGG | + | chr5_4:21442755-21442774 | Msa0843700:CDS | 35.0% | |
| CTGGCTTATTAAGGGAAAAA+GGG | + | chr5_4:21442763-21442782 | Msa0843700:CDS | 35.0% | |
| TACCATTTAAGCCAAGCATT+AGG | + | chr5_4:21442816-21442835 | Msa0843700:CDS | 35.0% | |
| AACCTAATGCTTGGCTTAAA+TGG | - | chr5_4:21442821-21442840 | None:intergenic | 35.0% | |
| TAATGATTGTTCCGAATCAG+TGG | + | chr5_4:21442890-21442909 | Msa0843700:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5_4:21442936-21442955 | None:intergenic | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5_4:21442933-21442952 | Msa0843700:CDS | 35.0% | |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5_4:21443032-21443051 | Msa0843700:CDS | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5_4:21443161-21443180 | Msa0843700:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5_4:21443172-21443191 | Msa0843700:CDS | 35.0% |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5_4:21443184-21443203 | Msa0843700:CDS | 35.0% | |
| TTGAGTTTGGAAGTTGTTGA+GGG | + | chr5_4:21443185-21443204 | Msa0843700:CDS | 35.0% | |
| AAGTTGTTGAGGGAATGAAA+TGG | + | chr5_4:21443195-21443214 | Msa0843700:CDS | 35.0% | |
| AGTTGTTGAGGGAATGAAAT+GGG | + | chr5_4:21443196-21443215 | Msa0843700:CDS | 35.0% | |
| GAATGAAATGGGAACAAGAA+AGG | + | chr5_4:21443207-21443226 | Msa0843700:CDS | 35.0% | |
| AAATGGGAACAAGAAAGGTT+TGG | + | chr5_4:21443212-21443231 | Msa0843700:CDS | 35.0% | |
| GAGGAGAATGGATACAAAAT+TGG | + | chr5_4:21443346-21443365 | Msa0843700:CDS | 35.0% | |
| TCAGACACTCACATCAAATT+AGG | + | chr5_4:21443384-21443403 | Msa0843700:CDS | 35.0% | |
| CACATCAAATTAGGAGCAAA+TGG | + | chr5_4:21443393-21443412 | Msa0843700:CDS | 35.0% | |
| CGGTAAAAATGTATGCAACA+AGG | + | chr5_4:21442052-21442071 | Msa0843700:exon | 35.0% | |
| ! | ACTAGGATTCCTTTTGTACA+TGG | - | chr5_4:21442085-21442104 | None:intergenic | 35.0% |
| !! | GCTCAAACTTACTCTTGTTT+TGG | + | chr5_4:21442168-21442187 | Msa0843700:CDS | 35.0% |
| !!! | ACATTTTTGTTCTGAGGTAG+AGG | - | chr5_4:21442225-21442244 | None:intergenic | 35.0% |
| GTAACCATCAGTTATTCATC+AGG | + | chr5_4:21442243-21442262 | Msa0843700:CDS | 35.0% | |
| TACACCTGATGAATAACTGA+TGG | - | chr5_4:21442250-21442269 | None:intergenic | 35.0% | |
| TCAGGTGTAAATAGTCAAAC+AGG | + | chr5_4:21442261-21442280 | Msa0843700:CDS | 35.0% | |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5_4:21442324-21442343 | None:intergenic | 35.0% |
| CCTTTGAACTTGTATTAGCT+TGG | - | chr5_4:21442593-21442612 | None:intergenic | 35.0% | |
| CCAAGCTAATACAAGTTCAA+AGG | + | chr5_4:21442590-21442609 | Msa0843700:CDS | 35.0% | |
| AATTCCTCCTGGCTTATTAA+GGG | + | chr5_4:21442755-21442774 | Msa0843700:CDS | 35.0% | |
| CTGGCTTATTAAGGGAAAAA+GGG | + | chr5_4:21442763-21442782 | Msa0843700:CDS | 35.0% | |
| TACCATTTAAGCCAAGCATT+AGG | + | chr5_4:21442816-21442835 | Msa0843700:CDS | 35.0% | |
| AACCTAATGCTTGGCTTAAA+TGG | - | chr5_4:21442821-21442840 | None:intergenic | 35.0% | |
| TAATGATTGTTCCGAATCAG+TGG | + | chr5_4:21442890-21442909 | Msa0843700:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5_4:21442936-21442955 | None:intergenic | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5_4:21442933-21442952 | Msa0843700:CDS | 35.0% | |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5_4:21443032-21443051 | Msa0843700:CDS | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5_4:21443161-21443180 | Msa0843700:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5_4:21443172-21443191 | Msa0843700:CDS | 35.0% |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5_4:21443184-21443203 | Msa0843700:CDS | 35.0% | |
| TTGAGTTTGGAAGTTGTTGA+GGG | + | chr5_4:21443185-21443204 | Msa0843700:CDS | 35.0% | |
| AAGTTGTTGAGGGAATGAAA+TGG | + | chr5_4:21443195-21443214 | Msa0843700:CDS | 35.0% | |
| AGTTGTTGAGGGAATGAAAT+GGG | + | chr5_4:21443196-21443215 | Msa0843700:CDS | 35.0% | |
| GAATGAAATGGGAACAAGAA+AGG | + | chr5_4:21443207-21443226 | Msa0843700:CDS | 35.0% | |
| AAATGGGAACAAGAAAGGTT+TGG | + | chr5_4:21443212-21443231 | Msa0843700:CDS | 35.0% | |
| GAGGAGAATGGATACAAAAT+TGG | + | chr5_4:21443346-21443365 | Msa0843700:CDS | 35.0% | |
| TCAGACACTCACATCAAATT+AGG | + | chr5_4:21443384-21443403 | Msa0843700:CDS | 35.0% | |
| CACATCAAATTAGGAGCAAA+TGG | + | chr5_4:21443393-21443412 | Msa0843700:CDS | 35.0% | |
| GGCTTCTTTCCATGTACAAA+AGG | + | chr5_4:21442073-21442092 | Msa0843700:CDS | 40.0% | |
| !!! | CTCTTGTTTTGGTTTGTCCA+AGG | + | chr5_4:21442179-21442198 | Msa0843700:CDS | 40.0% |
| GAACATAGCTTCTTCACTGT+GGG | - | chr5_4:21442298-21442317 | None:intergenic | 40.0% | |
| TGAACATAGCTTCTTCACTG+TGG | - | chr5_4:21442299-21442318 | None:intergenic | 40.0% | |
| AGAAGGAAGGGGAAATTTCA+AGG | + | chr5_4:21442366-21442385 | Msa0843700:CDS | 40.0% | |
| GAAGGAAGGGGAAATTTCAA+GGG | + | chr5_4:21442367-21442386 | Msa0843700:CDS | 40.0% | |
| AATTCTCTGTTGGGATAGCA+GGG | - | chr5_4:21442440-21442459 | None:intergenic | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5_4:21442677-21442696 | Msa0843700:CDS | 40.0% | |
| GAATTCCTCCTGGCTTATTA+AGG | + | chr5_4:21442754-21442773 | Msa0843700:CDS | 40.0% | |
| ! | TTTTCCCTTAATAAGCCAGG+AGG | - | chr5_4:21442762-21442781 | None:intergenic | 40.0% |
| ! | CCTTTTTCCCTTAATAAGCC+AGG | - | chr5_4:21442765-21442784 | None:intergenic | 40.0% |
| CCTGGCTTATTAAGGGAAAA+AGG | + | chr5_4:21442762-21442781 | Msa0843700:CDS | 40.0% | |
| GCTTATTAAGGGAAAAAGGG+TGG | + | chr5_4:21442766-21442785 | Msa0843700:CDS | 40.0% | |
| TTGGCTTAAATGGTAGTTGC+GGG | - | chr5_4:21442811-21442830 | None:intergenic | 40.0% | |
| CTTGGCTTAAATGGTAGTTG+CGG | - | chr5_4:21442812-21442831 | None:intergenic | 40.0% | |
| ! | CTTTCCAACAACCACTGATT+CGG | - | chr5_4:21442904-21442923 | None:intergenic | 40.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5_4:21442904-21442923 | Msa0843700:CDS | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5_4:21442997-21443016 | Msa0843700:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5_4:21442998-21443017 | Msa0843700:CDS | 40.0% | |
| ACAGAAGTTGCTAAGGTTGA+AGG | + | chr5_4:21443083-21443102 | Msa0843700:CDS | 40.0% | |
| AGTTGCTAAGGTTGAAGGAA+AGG | + | chr5_4:21443088-21443107 | Msa0843700:CDS | 40.0% | |
| TTGAAGGAAAGGACGCTATT+TGG | + | chr5_4:21443099-21443118 | Msa0843700:CDS | 40.0% | |
| TGAAGGAAAGGACGCTATTT+GGG | + | chr5_4:21443100-21443119 | Msa0843700:CDS | 40.0% | |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5_4:21443132-21443151 | Msa0843700:CDS | 40.0% |
| AAAGGTTTGGATGGAATGCT+GGG | + | chr5_4:21443225-21443244 | Msa0843700:CDS | 40.0% | |
| GGCTTCTTTCCATGTACAAA+AGG | + | chr5_4:21442073-21442092 | Msa0843700:CDS | 40.0% | |
| !!! | CTCTTGTTTTGGTTTGTCCA+AGG | + | chr5_4:21442179-21442198 | Msa0843700:CDS | 40.0% |
| GAACATAGCTTCTTCACTGT+GGG | - | chr5_4:21442298-21442317 | None:intergenic | 40.0% | |
| TGAACATAGCTTCTTCACTG+TGG | - | chr5_4:21442299-21442318 | None:intergenic | 40.0% | |
| AGAAGGAAGGGGAAATTTCA+AGG | + | chr5_4:21442366-21442385 | Msa0843700:CDS | 40.0% | |
| GAAGGAAGGGGAAATTTCAA+GGG | + | chr5_4:21442367-21442386 | Msa0843700:CDS | 40.0% | |
| AATTCTCTGTTGGGATAGCA+GGG | - | chr5_4:21442440-21442459 | None:intergenic | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5_4:21442677-21442696 | Msa0843700:CDS | 40.0% | |
| GAATTCCTCCTGGCTTATTA+AGG | + | chr5_4:21442754-21442773 | Msa0843700:CDS | 40.0% | |
| ! | TTTTCCCTTAATAAGCCAGG+AGG | - | chr5_4:21442762-21442781 | None:intergenic | 40.0% |
| ! | CCTTTTTCCCTTAATAAGCC+AGG | - | chr5_4:21442765-21442784 | None:intergenic | 40.0% |
| CCTGGCTTATTAAGGGAAAA+AGG | + | chr5_4:21442762-21442781 | Msa0843700:CDS | 40.0% | |
| GCTTATTAAGGGAAAAAGGG+TGG | + | chr5_4:21442766-21442785 | Msa0843700:CDS | 40.0% | |
| TTGGCTTAAATGGTAGTTGC+GGG | - | chr5_4:21442811-21442830 | None:intergenic | 40.0% | |
| CTTGGCTTAAATGGTAGTTG+CGG | - | chr5_4:21442812-21442831 | None:intergenic | 40.0% | |
| ! | CTTTCCAACAACCACTGATT+CGG | - | chr5_4:21442904-21442923 | None:intergenic | 40.0% |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5_4:21442904-21442923 | Msa0843700:CDS | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5_4:21442997-21443016 | Msa0843700:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5_4:21442998-21443017 | Msa0843700:CDS | 40.0% | |
| ACAGAAGTTGCTAAGGTTGA+AGG | + | chr5_4:21443083-21443102 | Msa0843700:CDS | 40.0% | |
| AGTTGCTAAGGTTGAAGGAA+AGG | + | chr5_4:21443088-21443107 | Msa0843700:CDS | 40.0% | |
| TTGAAGGAAAGGACGCTATT+TGG | + | chr5_4:21443099-21443118 | Msa0843700:CDS | 40.0% | |
| TGAAGGAAAGGACGCTATTT+GGG | + | chr5_4:21443100-21443119 | Msa0843700:CDS | 40.0% | |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5_4:21443132-21443151 | Msa0843700:CDS | 40.0% |
| AAAGGTTTGGATGGAATGCT+GGG | + | chr5_4:21443225-21443244 | Msa0843700:CDS | 40.0% | |
| TAACCTGAATTTGGCCCTGA+TGG | - | chr5_4:21442126-21442145 | None:intergenic | 45.0% | |
| CAATTCTCTGTTGGGATAGC+AGG | - | chr5_4:21442441-21442460 | None:intergenic | 45.0% | |
| TTGAAGGGCTCCAAAGCTAT+TGG | - | chr5_4:21442666-21442685 | None:intergenic | 45.0% | |
| AGGAATTCCATCAGAGGCAA+CGG | - | chr5_4:21442742-21442761 | None:intergenic | 45.0% | |
| TGGCTTAAATGGTAGTTGCG+GGG | - | chr5_4:21442810-21442829 | None:intergenic | 45.0% | |
| ! | ATTTGGTAGCTTGGAACGCA+AGG | - | chr5_4:21442853-21442872 | None:intergenic | 45.0% |
| TGTTCCGAATCAGTGGTTGT+TGG | + | chr5_4:21442897-21442916 | Msa0843700:CDS | 45.0% | |
| GGGAACAAGAAAGGTTTGGA+TGG | + | chr5_4:21443216-21443235 | Msa0843700:CDS | 45.0% | |
| GAAAGGTTTGGATGGAATGC+TGG | + | chr5_4:21443224-21443243 | Msa0843700:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5_4:21443230-21443249 | Msa0843700:CDS | 45.0% | |
| TAACCTGAATTTGGCCCTGA+TGG | - | chr5_4:21442126-21442145 | None:intergenic | 45.0% | |
| CAATTCTCTGTTGGGATAGC+AGG | - | chr5_4:21442441-21442460 | None:intergenic | 45.0% | |
| TTGAAGGGCTCCAAAGCTAT+TGG | - | chr5_4:21442666-21442685 | None:intergenic | 45.0% | |
| AGGAATTCCATCAGAGGCAA+CGG | - | chr5_4:21442742-21442761 | None:intergenic | 45.0% | |
| TGGCTTAAATGGTAGTTGCG+GGG | - | chr5_4:21442810-21442829 | None:intergenic | 45.0% | |
| ! | ATTTGGTAGCTTGGAACGCA+AGG | - | chr5_4:21442853-21442872 | None:intergenic | 45.0% |
| TGTTCCGAATCAGTGGTTGT+TGG | + | chr5_4:21442897-21442916 | Msa0843700:CDS | 45.0% | |
| GGGAACAAGAAAGGTTTGGA+TGG | + | chr5_4:21443216-21443235 | Msa0843700:CDS | 45.0% | |
| GAAAGGTTTGGATGGAATGC+TGG | + | chr5_4:21443224-21443243 | Msa0843700:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5_4:21443230-21443249 | Msa0843700:CDS | 45.0% | |
| TTTCAGACCCACCACCATCA+GGG | + | chr5_4:21442109-21442128 | Msa0843700:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5_4:21442119-21442138 | None:intergenic | 50.0% |
| GCAAAATCCGTTGCCTCTGA+TGG | + | chr5_4:21442732-21442751 | Msa0843700:CDS | 50.0% | |
| GTTTGGATGGAATGCTGGGA+AGG | + | chr5_4:21443229-21443248 | Msa0843700:CDS | 50.0% | |
| TTTCAGACCCACCACCATCA+GGG | + | chr5_4:21442109-21442128 | Msa0843700:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5_4:21442119-21442138 | None:intergenic | 50.0% |
| GCAAAATCCGTTGCCTCTGA+TGG | + | chr5_4:21442732-21442751 | Msa0843700:CDS | 50.0% | |
| GTTTGGATGGAATGCTGGGA+AGG | + | chr5_4:21443229-21443248 | Msa0843700:CDS | 50.0% | |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | - | chr5_4:21442102-21442121 | None:intergenic | 55.0% |
| CTTTCAGACCCACCACCATC+AGG | + | chr5_4:21442108-21442127 | Msa0843700:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5_4:21442120-21442139 | None:intergenic | 55.0% |
| CCTGAATTTGGCCCTGATGG+TGG | - | chr5_4:21442123-21442142 | None:intergenic | 55.0% | |
| CCACCATCAGGGCCAAATTC+AGG | + | chr5_4:21442120-21442139 | Msa0843700:CDS | 55.0% | |
| GCCTCTGATGGAATTCCTCC+TGG | + | chr5_4:21442744-21442763 | Msa0843700:CDS | 55.0% | |
| GCCAGGAGGAATTCCATCAG+AGG | - | chr5_4:21442748-21442767 | None:intergenic | 55.0% | |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | - | chr5_4:21442102-21442121 | None:intergenic | 55.0% |
| CTTTCAGACCCACCACCATC+AGG | + | chr5_4:21442108-21442127 | Msa0843700:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5_4:21442120-21442139 | None:intergenic | 55.0% |
| CCTGAATTTGGCCCTGATGG+TGG | - | chr5_4:21442123-21442142 | None:intergenic | 55.0% | |
| CCACCATCAGGGCCAAATTC+AGG | + | chr5_4:21442120-21442139 | Msa0843700:CDS | 55.0% | |
| GCCTCTGATGGAATTCCTCC+TGG | + | chr5_4:21442744-21442763 | Msa0843700:CDS | 55.0% | |
| GCCAGGAGGAATTCCATCAG+AGG | - | chr5_4:21442748-21442767 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 21442026 | 21443528 | 21442026 | ID=Msa0843700;Name=Msa0843700 |
| chr5_4 | mRNA | 21442026 | 21443528 | 21442026 | ID=Msa0843700-mRNA-1;Parent=Msa0843700;Name=Msa0843700-mRNA-1;_AED=0.32;_eAED=0.32;_QI=34|1|1|1|1|1|2|107|386 |
| chr5_4 | exon | 21442026 | 21442388 | 21442026 | ID=Msa0843700-mRNA-1:exon:8857;Parent=Msa0843700-mRNA-1 |
| chr5_4 | exon | 21442590 | 21443528 | 21442590 | ID=Msa0843700-mRNA-1:exon:8858;Parent=Msa0843700-mRNA-1 |
| chr5_4 | five_prime_UTR | 21442026 | 21442059 | 21442026 | ID=Msa0843700-mRNA-1:five_prime_utr;Parent=Msa0843700-mRNA-1 |
| chr5_4 | CDS | 21442060 | 21442388 | 21442060 | ID=Msa0843700-mRNA-1:cds;Parent=Msa0843700-mRNA-1 |
| chr5_4 | CDS | 21442590 | 21443421 | 21442590 | ID=Msa0843700-mRNA-1:cds;Parent=Msa0843700-mRNA-1 |
| chr5_4 | three_prime_UTR | 21443422 | 21443528 | 21443422 | ID=Msa0843700-mRNA-1:three_prime_utr;Parent=Msa0843700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
