AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1316870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316870 MtrunA17_Chr8g0354911 92.146 522 10 2 96 586 76 597 0.0 967
Msa1316870 MtrunA17_Chr3g0080381 70.746 523 120 3 97 586 91 613 0.0 758
Msa1316870 MtrunA17_Chr7g0269511 45.138 545 230 11 86 586 30 549 3.30e-149 442
Msa1316870 MtrunA17_Chr1g0175661 45.057 526 233 10 98 586 37 543 1.11e-141 422
Msa1316870 MtrunA17_Chr7g0269521 44.297 526 238 9 98 586 40 547 3.45e-140 419
Msa1316870 MtrunA17_Chr7g0269531 45.247 526 233 12 98 586 43 550 1.10e-139 417
Msa1316870 MtrunA17_Chr1g0195331 43.561 528 240 11 98 586 32 540 6.05e-134 402
Msa1316870 MtrunA17_Chr1g0195301 43.371 528 241 11 98 586 32 540 1.08e-133 402
Msa1316870 MtrunA17_Chr1g0195321 43.371 528 241 11 98 586 32 540 1.08e-133 402
Msa1316870 MtrunA17_Chr1g0195351 43.074 527 242 11 98 586 32 538 7.64e-131 394
Msa1316870 MtrunA17_Chr1g0192331 40.410 537 243 8 85 586 19 513 5.64e-122 371
Msa1316870 MtrunA17_Chr7g0269541 39.771 523 253 11 97 586 48 541 2.27e-116 357
Msa1316870 MtrunA17_Chr4g0069881 39.962 523 234 12 98 586 44 520 1.60e-111 344
Msa1316870 MtrunA17_Chr1g0147051 38.869 548 254 14 89 586 76 592 6.47e-107 334
Msa1316870 MtrunA17_Chr2g0302021 41.164 464 192 12 163 588 92 512 2.75e-100 315
Msa1316870 MtrunA17_Chr3g0126771 37.862 552 262 13 82 586 65 582 6.76e-100 316
Msa1316870 MtrunA17_Chr8g0354901 38.004 521 257 10 98 586 80 566 3.80e-98 311
Msa1316870 MtrunA17_Chr8g0391311 36.414 541 244 12 97 586 35 526 3.54e-97 307
Msa1316870 MtrunA17_Chr8g0391291 35.675 541 248 12 97 586 33 524 2.64e-94 299
Msa1316870 MtrunA17_Chr3g0080391 37.030 532 258 14 92 586 68 559 9.39e-94 299
Msa1316870 MtrunA17_Chr4g0011771 40.152 528 216 17 98 586 32 498 1.17e-93 297
Msa1316870 MtrunA17_Chr7g0272141 37.797 463 224 9 155 586 98 527 4.36e-93 296
Msa1316870 MtrunA17_Chr4g0069841 37.149 498 226 11 128 588 56 503 1.00e-92 295
Msa1316870 MtrunA17_Chr8g0345281 37.546 538 267 14 97 590 71 583 3.44e-92 295
Msa1316870 MtrunA17_Chr1g0195311 55.020 249 82 1 368 586 51 299 5.61e-92 286
Msa1316870 MtrunA17_Chr4g0069861 36.122 526 227 13 110 588 41 504 6.34e-92 293
Msa1316870 MtrunA17_Chr4g0011791 37.853 531 219 16 98 586 33 494 2.02e-91 291
Msa1316870 MtrunA17_Chr4g0011751 38.495 465 210 10 153 586 55 474 1.67e-90 288
Msa1316870 MtrunA17_Chr7g0233771 39.140 465 202 10 160 586 118 539 5.65e-89 286
Msa1316870 MtrunA17_Chr7g0233801 37.100 469 205 9 160 586 118 538 1.43e-87 282
Msa1316870 MtrunA17_Chr7g0233831 36.596 470 207 9 160 586 119 540 1.18e-84 275
Msa1316870 MtrunA17_Chr3g0079361 43.711 318 142 5 301 586 200 512 7.97e-84 271
Msa1316870 MtrunA17_Chr3g0079341 43.711 318 142 5 301 586 200 512 1.71e-83 271
Msa1316870 MtrunA17_Chr4g0018371 34.586 532 258 15 98 586 40 524 3.78e-83 270
Msa1316870 MtrunA17_Chr3g0090091 43.711 318 142 5 301 586 201 513 3.90e-83 270
Msa1316870 MtrunA17_Chr7g0272151 32.353 544 275 13 98 586 63 568 1.15e-82 270
Msa1316870 MtrunA17_Chr3g0079351 43.396 318 143 5 301 586 200 512 4.40e-82 267
Msa1316870 MtrunA17_Chr4g0069891 33.457 541 262 11 98 586 85 579 4.69e-82 269
Msa1316870 MtrunA17_Chr2g0302001 49.603 252 94 2 365 586 174 422 5.19e-81 261
Msa1316870 MtrunA17_Chr1g0192321 32.143 532 297 11 89 578 51 560 4.29e-79 261
Msa1316870 MtrunA17_Chr1g0194081 32.657 542 305 12 81 586 31 548 1.64e-76 253
Msa1316870 MtrunA17_Chr8g0384121 32.258 527 276 12 80 564 42 529 3.60e-75 250
Msa1316870 MtrunA17_Chr1g0194091 33.455 547 257 17 98 583 45 545 2.23e-74 248
Msa1316870 MtrunA17_Chr8g0345211 33.394 548 262 17 90 586 72 567 3.74e-72 242
Msa1316870 MtrunA17_Chr2g0301931 45.318 267 113 2 350 586 15 278 1.08e-71 232
Msa1316870 MtrunA17_Chr1g0192301 30.263 532 275 11 89 569 58 544 6.28e-70 236
Msa1316870 MtrunA17_Chr4g0000121 30.492 528 283 12 89 571 40 528 9.25e-70 236
Msa1316870 MtrunA17_Chr1g0192311 30.418 526 286 12 89 571 53 541 3.88e-69 234
Msa1316870 MtrunA17_Chr1g0192281 30.418 526 286 12 89 571 53 541 3.88e-69 234
Msa1316870 MtrunA17_Chr3g0129921 31.721 517 268 15 96 564 50 529 2.73e-68 231
Msa1316870 MtrunA17_Chr7g0270691 30.228 526 290 12 98 583 43 531 1.10e-64 221
Msa1316870 MtrunA17_Chr7g0270651 30.975 523 299 13 98 579 46 547 2.26e-63 219
Msa1316870 MtrunA17_Chr7g0234711 48.148 216 80 3 403 586 39 254 1.31e-62 207
Msa1316870 MtrunA17_Chr7g0270661 31.284 553 284 12 85 579 33 547 7.96e-62 214
Msa1316870 MtrunA17_Chr7g0270671 31.284 553 284 12 85 579 33 547 7.96e-62 214
Msa1316870 MtrunA17_Chr4g0067611 28.355 529 283 11 98 578 63 543 1.38e-61 214
Msa1316870 MtrunA17_Chr2g0295531 28.846 520 282 14 98 578 47 517 2.08e-61 214
Msa1316870 MtrunA17_Chr4g0067601 28.897 526 284 13 98 578 63 543 2.17e-58 205
Msa1316870 MtrunA17_Chr7g0270631 29.609 537 288 12 98 579 34 535 2.77e-58 211
Msa1316870 MtrunA17_Chr7g0270631 29.026 534 303 16 98 579 582 1091 4.97e-51 190
Msa1316870 MtrunA17_Chr8g0380581 36.893 309 157 6 310 583 53 358 1.01e-54 190
Msa1316870 MtrunA17_Chr5g0437831 36.644 292 149 5 320 579 74 361 3.28e-54 189
Msa1316870 MtrunA17_Chr2g0295551 27.938 519 293 14 98 578 60 535 3.81e-54 193
Msa1316870 MtrunA17_Chr7g0271381 29.222 527 279 16 97 584 63 534 9.40e-51 184
Msa1316870 MtrunA17_Chr2g0295541 26.594 549 293 14 98 578 60 566 1.48e-48 178
Msa1316870 MtrunA17_Chr7g0268241 37.415 294 138 7 318 579 49 328 1.66e-47 170
Msa1316870 MtrunA17_Chr2g0334111 36.177 293 139 8 319 579 25 301 2.20e-46 166
Msa1316870 MtrunA17_Chr8g0391261 52.419 124 58 1 464 586 28 151 1.96e-37 136
Msa1316870 MtrunA17_Chr8g0389771 28.646 384 200 12 249 586 18 373 6.29e-35 135
Msa1316870 MtrunA17_Chr6g0487101 33.223 301 141 9 328 586 94 376 1.68e-34 134
Msa1316870 MtrunA17_Chr7g0258341 31.290 310 157 8 318 586 89 383 1.64e-33 132
Msa1316870 MtrunA17_Chr1g0194311 31.056 322 161 10 284 564 43 344 3.19e-32 128
Msa1316870 MtrunA17_Chr6g0453551 30.662 287 143 7 319 564 6 277 2.01e-30 121
Msa1316870 MtrunA17_Chr6g0466951 29.078 282 142 7 319 564 69 328 8.84e-30 120
Msa1316870 MtrunA17_Chr2g0294321 27.857 280 151 6 321 564 58 322 1.69e-28 117
Msa1316870 MtrunA17_Chr7g0265201 27.679 336 180 9 271 564 47 361 3.23e-28 117
Msa1316870 MtrunA17_Chr6g0466961 28.571 280 146 7 319 564 40 299 2.76e-27 112
Msa1316870 MtrunA17_Chr1g0161731 28.938 273 141 6 329 564 59 315 6.46e-27 112
Msa1316870 MtrunA17_Chr7g0217941 28.873 284 148 6 321 564 8 277 2.89e-26 109
Msa1316870 MtrunA17_Chr5g0446301 31.802 283 134 9 325 564 67 333 1.40e-24 105
Msa1316870 MtrunA17_Chr5g0399221 26.736 288 154 7 319 564 63 335 2.41e-24 105
Msa1316870 MtrunA17_Chr4g0070051 26.403 303 164 9 300 560 33 318 3.72e-24 104
Msa1316870 MtrunA17_Chr2g0295851 27.437 277 147 8 321 564 57 312 2.48e-22 98.6
Msa1316870 MtrunA17_Chr8g0351871 27.719 285 148 6 319 564 33 298 3.50e-22 98.2
Msa1316870 MtrunA17_Chr2g0299431 35.294 204 96 7 320 491 53 252 1.53e-21 95.1
Msa1316870 MtrunA17_Chr5g0437821 38.532 109 66 1 428 535 27 135 7.67e-21 89.0
Msa1316870 MtrunA17_Chr5g0440871 26.786 280 157 5 315 565 35 295 4.59e-18 85.9
Msa1316870 MtrunA17_Chr4g0025841 28.000 250 140 6 312 536 30 264 2.85e-16 79.3
Msa1316870 MtrunA17_Chr5g0440901 32.143 112 67 1 425 536 41 143 1.35e-15 74.3
Msa1316870 MtrunA17_Chr8g0391281 26.959 319 180 11 97 403 33 310 2.20e-15 77.4
Msa1316870 MtrunA17_Chr7g0265161 26.554 177 77 4 388 534 6 159 1.37e-14 73.9
Msa1316870 MtrunA17_Chr6g0459791 36.364 121 63 4 468 586 4 112 2.20e-12 64.3
Msa1316870 MtrunA17_Chr7g0234731 35.644 101 60 2 301 401 219 314 4.44e-12 67.4
Msa1316870 MtrunA17_Chr5g0420831 23.792 269 156 7 321 554 73 327 3.18e-11 65.5
Msa1316870 MtrunA17_Chr4g0037751 22.263 274 162 7 317 554 69 327 5.58e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316870 AT5G04970.1 55.429 525 193 7 97 586 87 605 0.0 582
Msa1316870 AT3G10720.2 53.966 580 223 8 45 586 27 600 0.0 577
Msa1316870 AT4G02330.1 43.738 535 252 8 93 586 30 556 1.15e-147 439
Msa1316870 AT1G02810.1 44.161 548 240 11 87 580 21 556 4.60e-142 424
Msa1316870 AT2G47550.1 42.018 545 265 9 77 586 15 543 5.07e-127 385
Msa1316870 AT3G10720.1 63.525 244 59 1 373 586 1 244 6.87e-111 333
Msa1316870 AT2G26440.1 38.577 534 253 14 92 586 35 532 6.04e-101 317
Msa1316870 AT4G33220.1 41.469 463 214 9 163 588 68 510 1.25e-98 310
Msa1316870 AT3G43270.1 41.253 463 205 8 163 588 80 512 5.65e-98 309
Msa1316870 AT5G53370.1 37.179 546 259 16 85 586 65 570 2.51e-95 304
Msa1316870 AT4G33220.2 49.686 318 122 4 302 588 79 389 2.72e-95 298
Msa1316870 AT3G05620.1 35.714 532 259 11 95 586 38 526 5.69e-95 301
Msa1316870 AT5G53370.2 37.179 546 259 16 85 586 101 606 6.01e-95 304
Msa1316870 AT1G53830.1 38.302 530 272 12 98 591 66 576 4.88e-93 298
Msa1316870 AT2G45220.1 51.656 302 107 5 316 586 204 497 6.48e-93 295
Msa1316870 AT3G49220.1 37.024 551 259 15 79 586 76 581 9.78e-93 297
Msa1316870 AT3G60730.1 39.492 433 205 7 194 586 89 504 2.20e-92 294
Msa1316870 AT3G49220.3 37.570 535 250 14 95 586 133 626 3.00e-92 297
Msa1316870 AT1G11580.1 38.043 460 216 7 162 588 121 544 3.97e-92 295
Msa1316870 AT1G11580.2 38.043 460 216 7 162 588 142 565 4.76e-92 295
Msa1316870 AT1G23200.1 36.210 533 267 13 97 586 37 539 9.14e-89 286
Msa1316870 AT5G04960.1 36.531 542 259 17 83 586 55 549 9.79e-89 286
Msa1316870 AT3G14310.1 35.401 548 293 12 87 591 52 581 9.62e-88 284
Msa1316870 AT2G43050.1 40.090 444 191 10 176 586 100 501 1.37e-86 279
Msa1316870 AT2G26450.1 31.250 624 332 19 9 586 25 597 1.00e-85 280
Msa1316870 AT1G53840.1 34.177 553 277 16 80 586 61 572 7.14e-85 276
Msa1316870 AT3G10710.1 35.084 533 260 15 89 586 65 546 9.98e-85 275
Msa1316870 AT4G02320.1 35.019 514 249 10 116 586 32 503 2.55e-84 273
Msa1316870 AT4G02300.1 37.660 470 218 9 155 586 85 517 3.91e-82 268
Msa1316870 AT5G27870.1 32.015 531 291 10 92 586 51 547 2.70e-81 271
Msa1316870 AT5G51490.1 33.271 538 282 13 85 586 25 521 9.09e-81 264
Msa1316870 AT4G00190.1 44.932 296 128 5 319 583 165 456 3.30e-80 261
Msa1316870 AT4G33230.1 34.799 523 278 12 98 586 99 592 2.45e-79 263
Msa1316870 AT3G59010.1 37.500 456 208 10 164 586 102 513 6.75e-79 259
Msa1316870 AT3G05610.1 30.989 526 289 8 98 586 62 550 2.81e-78 261
Msa1316870 AT4G03930.1 44.816 299 129 4 319 586 216 509 1.97e-76 253
Msa1316870 AT3G47400.1 34.472 615 315 17 14 586 11 579 1.97e-76 254
Msa1316870 AT5G51500.1 42.812 320 145 5 300 586 211 525 4.16e-76 252
Msa1316870 AT3G27980.1 43.813 299 132 4 319 586 189 482 1.48e-74 247
Msa1316870 AT1G11590.1 43.478 299 133 4 319 586 216 509 3.96e-74 246
Msa1316870 AT3G14300.1 32.740 562 294 16 66 586 435 953 3.36e-73 253
Msa1316870 AT5G20860.2 31.250 544 266 13 96 587 37 524 5.26e-73 244
Msa1316870 AT5G49180.1 31.115 556 288 13 85 588 45 557 2.00e-71 240
Msa1316870 AT3G06830.1 30.813 529 312 8 90 586 47 553 1.71e-67 230
Msa1316870 AT5G09760.2 41.176 289 129 5 315 564 263 549 5.22e-64 221
Msa1316870 AT5G09760.1 41.176 289 129 5 315 564 237 523 5.63e-64 220
Msa1316870 AT5G64640.1 39.384 292 133 6 315 564 285 574 3.45e-61 214
Msa1316870 AT1G11370.1 41.700 247 111 2 316 532 43 286 5.55e-60 202
Msa1316870 AT4G15980.1 34.699 366 201 5 255 586 326 687 2.69e-57 205
Msa1316870 AT5G20860.1 28.067 538 251 12 96 581 37 490 5.63e-57 200
Msa1316870 AT4G15980.2 34.699 366 201 5 255 586 336 697 5.72e-57 204
Msa1316870 AT2G47030.1 38.129 278 136 4 320 564 278 552 4.96e-50 183
Msa1316870 AT2G47040.1 36.334 311 161 5 306 583 271 577 6.96e-49 180
Msa1316870 AT3G62170.1 39.928 278 131 5 320 564 278 552 3.86e-48 177
Msa1316870 AT1G05310.1 32.056 287 137 6 318 561 90 361 9.07e-37 142
Msa1316870 AT2G36710.1 30.363 303 160 6 321 586 93 381 3.88e-36 140
Msa1316870 AT5G19730.1 28.084 381 200 11 251 586 26 377 5.86e-35 136
Msa1316870 AT2G36700.1 28.571 301 165 6 321 586 44 329 1.13e-31 125
Msa1316870 AT3G17060.1 27.632 304 167 7 319 586 46 332 5.10e-31 124
Msa1316870 AT2G21610.1 29.603 277 147 8 319 564 49 308 2.33e-30 122
Msa1316870 AT2G21610.2 29.603 277 147 8 319 564 54 313 2.92e-30 122
Msa1316870 AT5G18990.1 29.965 287 144 6 319 564 29 299 2.17e-28 116
Msa1316870 AT3G24130.1 28.571 308 159 8 298 564 17 304 4.36e-28 115
Msa1316870 AT3G29090.1 29.720 286 147 6 319 564 7 278 4.93e-27 112
Msa1316870 AT2G19150.1 30.742 283 144 10 319 564 41 308 1.04e-26 112
Msa1316870 AT5G47500.1 27.778 288 151 7 319 564 61 333 1.70e-25 108
Msa1316870 AT5G07430.1 29.433 282 148 8 316 562 64 329 1.15e-24 106
Msa1316870 AT2G19150.2 30.709 254 124 10 319 535 41 279 6.66e-24 102
Msa1316870 AT5G55590.1 28.417 278 142 8 315 550 78 340 2.04e-22 100
Msa1316870 AT5G55590.2 29.658 263 128 9 315 535 78 325 2.38e-22 99.0
Msa1316870 AT1G44980.1 37.725 167 71 3 319 455 78 241 7.77e-21 92.8
Msa1316870 AT2G47280.1 27.178 287 150 8 319 564 35 303 2.02e-20 93.2
Msa1316870 AT5G61680.1 26.429 280 154 8 321 564 71 334 9.33e-18 85.9
Msa1316870 AT5G07420.1 25.267 281 161 6 316 562 64 329 3.26e-17 84.0
Msa1316870 AT5G07410.1 25.461 271 148 9 329 562 76 329 1.59e-15 79.0
Msa1316870 AT1G69940.1 25.461 271 148 9 329 562 76 329 2.21e-15 78.6
Msa1316870 AT5G26810.1 24.739 287 163 6 319 564 34 308 6.31e-15 77.0

Find 111 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTTAATGCAGCTGTTTC+TGG 0.120214 8_4:+17823331 Msa1316870:intron
TATGGTGAGTTTGATAATTA+TGG 0.151521 8_4:+17823861 Msa1316870:CDS
AAGAAGAATATCTTGCTTAT+TGG 0.206210 8_4:+17822927 Msa1316870:CDS
ACAGAAAACTTCACTTCTAT+TGG 0.227904 8_4:+17822798 Msa1316870:CDS
GTTTATTTGCAATCATATAT+TGG 0.279888 8_4:+17823774 Msa1316870:CDS
GAAATTCCTGTGTTCTGATT+TGG 0.280507 8_4:-17823651 None:intergenic
CAGAAAACTTCACTTCTATT+GGG 0.284733 8_4:+17822799 Msa1316870:CDS
CTGGTGCTATAACTCATAAT+AGG 0.296276 8_4:+17823886 Msa1316870:CDS
GGTGATTTAATTCAACCTTC+TGG 0.303001 8_4:+17823795 Msa1316870:CDS
GAAGAAGAAGTAGGAGTAGA+AGG 0.331064 8_4:-17820497 None:intergenic
AGAATGGAACGACATAGTTT+TGG 0.342470 8_4:-17820545 None:intergenic
TATGTTATTGTGAGTCTTGA+TGG 0.346098 8_4:+17822774 Msa1316870:CDS
GGAGGAGGAGGAGAAGGAAT+AGG 0.359241 8_4:-17820467 None:intergenic
TGCTACTGCTTGGTGCTTTG+AGG 0.368599 8_4:-17823400 None:intergenic
TAATGTTGATTTGCATGCTT+TGG 0.371872 8_4:-17820519 None:intergenic
GAAGGAGAAGGAGGAGGAGG+AGG 0.372729 8_4:-17820479 None:intergenic
GATTGAAGCTGCAGATGATT+TGG 0.384083 8_4:+17823689 Msa1316870:CDS
TCTTCTGCCTTCAAATTGTC+AGG 0.392479 8_4:-17822840 None:intergenic
AAGAGGTTTGTGCTTGGAGG+AGG 0.392989 8_4:-17820301 None:intergenic
GAATTTCAATACAAAATTGT+AGG 0.393628 8_4:+17823667 Msa1316870:CDS
GTGTAAGGTACATCAGTATC+AGG 0.398032 8_4:-17823995 None:intergenic
AACCTTCTGGATGGTTAGAA+TGG 0.401213 8_4:+17823808 Msa1316870:CDS
GTAGAAGGAGAAGGAGGAGG+AGG 0.410020 8_4:-17820482 None:intergenic
AAGAAGAGGTTTGTGCTTGG+AGG 0.415972 8_4:-17820304 None:intergenic
GAGAAAGTCTTTGAATACTT+TGG 0.418166 8_4:-17820654 None:intergenic
TGAGAAGGAGAAGGAGAAGA+AGG 0.425479 8_4:-17820350 None:intergenic
TGAGGAAGAGGGAGAGAGGA+AGG 0.430437 8_4:-17820268 None:intergenic
TTTCTTATCTATGTCAATGA+AGG 0.432591 8_4:+17822870 Msa1316870:CDS
CACCGATGTGTTGGTGGAAA+AGG 0.434972 8_4:+17820820 Msa1316870:CDS
TGGTGCTATAACTCATAATA+GGG 0.435985 8_4:+17823887 Msa1316870:CDS
AAGAAGAAGAGGTTTGTGCT+TGG 0.440134 8_4:-17820307 None:intergenic
TACAGAGAATGTGACATCTA+TGG 0.441861 8_4:+17823513 Msa1316870:CDS
AATTCAACTAAGAATTACTT+AGG 0.450056 8_4:+17823723 Msa1316870:CDS
ATCGTCTAGTGCCGCAATCT+CGG 0.451993 8_4:-17820711 None:intergenic
AAATGTAGTCCTTCAGTGTA+AGG 0.452995 8_4:-17824010 None:intergenic
CTGACCTTGTAAGCCTTAGT+AGG 0.460092 8_4:-17821040 None:intergenic
GACCATGGAAAGTGTATTCA+AGG 0.469948 8_4:+17823748 Msa1316870:CDS
ATTAATAAGACTTGCATCAC+AGG 0.470634 8_4:+17822957 Msa1316870:CDS
GGAAGGGTAAAATGAGGAAG+AGG 0.475290 8_4:-17820280 None:intergenic
ATATAGTATTTCACTTGGGT+TGG 0.476341 8_4:+17820961 Msa1316870:CDS
CAATTATATAGTATTTCACT+TGG 0.478234 8_4:+17820956 Msa1316870:CDS
CAAACAAGGTCTTCCTACTA+AGG 0.479222 8_4:+17821027 Msa1316870:CDS
CCTACGGACCCCTACCACTT+AGG 0.480195 8_4:+17820587 Msa1316870:CDS
ATAGGAGAAGGAGAAGGAGT+AGG 0.484950 8_4:-17820449 None:intergenic
GGTTTGTGCTTGGAGGAGGA+AGG 0.486473 8_4:-17820297 None:intergenic
TAATGACTCCTACTCAAGCT+TGG 0.487193 8_4:+17823931 Msa1316870:CDS
GGAAATCATAGTGTGGTAGA+TGG 0.488932 8_4:+17822978 Msa1316870:CDS
AAAATGAGGAAGAGGGAGAG+AGG 0.489550 8_4:-17820272 None:intergenic
TAGAATGGAATGGAACAGTT+GGG 0.490562 8_4:+17823823 Msa1316870:CDS
CATGCTTTGGAAGAAGAAGT+AGG 0.496496 8_4:-17820506 None:intergenic
GACAATTTGAAGGCAGAAGA+TGG 0.504495 8_4:+17822843 Msa1316870:CDS
GGAGTAGAAGGAGAAGGAGG+AGG 0.506440 8_4:-17820485 None:intergenic
TGCTGCACCTGACAATTTGA+AGG 0.506729 8_4:+17822833 Msa1316870:CDS
ATCATAGTGTGGTAGATGGT+TGG 0.507535 8_4:+17822982 Msa1316870:CDS
GGAGGAGAAGGAATAGGAGA+AGG 0.508854 8_4:-17820461 None:intergenic
AATATCTTGCTTATTGGTGA+TGG 0.511844 8_4:+17822933 Msa1316870:CDS
GAAGGAGAAGGAGAAGGAGA+AGG 0.512161 8_4:-17820413 None:intergenic
CGTAGGAGAGGAACGGATTG+AGG 0.513414 8_4:-17820570 None:intergenic
GAGAGGAAGGAGAAGAATGA+AGG 0.514984 8_4:-17820255 None:intergenic
CTCAATCCGTTCCTCTCCTA+CGG 0.515534 8_4:+17820571 Msa1316870:CDS
GGAACGGATTGAGGAGAGAA+TGG 0.517254 8_4:-17820561 None:intergenic
GAAGAAGAATGAGAAGGAGA+AGG 0.521603 8_4:-17820359 None:intergenic
GAATGAGAAGGAGAAGGAGA+AGG 0.521603 8_4:-17820419 None:intergenic
GAAGAAGAATGAGAAGGAGA+AGG 0.521603 8_4:-17820425 None:intergenic
CTAAGTAATCTACATTGAGC+TGG 0.522297 8_4:-17820748 None:intergenic
TGTCAATGAAGGAGTATATG+AGG 0.522301 8_4:+17822881 Msa1316870:CDS
CTCGGCATGGTTAAGAGAAG+TGG 0.523798 8_4:-17820693 None:intergenic
CTTAAAGAAAGCGAAAATAG+AGG 0.524153 8_4:+17822735 Msa1316870:CDS
GTTTGTGCTTGGAGGAGGAA+GGG 0.526979 8_4:-17820296 None:intergenic
GTAGGAGTAGAAGGAGAAGG+AGG 0.529824 8_4:-17820488 None:intergenic
GAAGTAGGAGTAGAAGGAGA+AGG 0.530923 8_4:-17820491 None:intergenic
TCTTCCTACTAAGGCTTACA+AGG 0.530926 8_4:+17821036 Msa1316870:CDS
GTCCTTGAATACACTTTCCA+TGG 0.545707 8_4:-17823750 None:intergenic
ATTTAATTCAACCTTCTGGA+TGG 0.546192 8_4:+17823799 Msa1316870:CDS
GAAGGAGAAGAAGAATGAGA+AGG 0.552931 8_4:-17820365 None:intergenic
TAACAACACCGATGTGTTGG+TGG 0.552935 8_4:+17820814 Msa1316870:CDS
CAGCTGATTTAAGTTCATCT+CGG 0.554463 8_4:-17820778 None:intergenic
AAGAATGAAGGAAGTTGATG+AGG 0.559639 8_4:-17820243 None:intergenic
GAATGAGAATGAGAAGGAGA+AGG 0.563183 8_4:-17820383 None:intergenic
GAAGAAGAATGAGAATGAGA+AGG 0.564258 8_4:-17820389 None:intergenic
TCTGGATGGTTAGAATGGAA+TGG 0.564904 8_4:+17823813 Msa1316870:CDS
TTAGAATGGAATGGAACAGT+TGG 0.566790 8_4:+17823822 Msa1316870:CDS
AATTGTGTAACATTACTCAA+TGG 0.567088 8_4:-17820938 None:intergenic
AAAGGTTGAAGAATTAAAAG+TGG 0.571478 8_4:-17823006 None:intergenic
TCTTAACCATGCCGAGATTG+CGG 0.571735 8_4:+17820700 Msa1316870:CDS
GAAGGGTAAAATGAGGAAGA+GGG 0.576074 8_4:-17820279 None:intergenic
AAGCGTAAGACTCGCAAACA+AGG 0.581727 8_4:+17821013 Msa1316870:CDS
CCTAAGTGGTAGGGGTCCGT+AGG 0.582317 8_4:-17820587 None:intergenic
GTAGGAGAAGAAGAATGAGA+AGG 0.582654 8_4:-17820431 None:intergenic
TGGAGAGAGATTTATAGCAG+TGG 0.584956 8_4:+17823351 Msa1316870:CDS
GGAGGAGGAAGGGTAAAATG+AGG 0.585231 8_4:-17820286 None:intergenic
AGAAAACTTCACTTCTATTG+GGG 0.587182 8_4:+17822800 Msa1316870:CDS
GTGGTAGGGGTCCGTAGGAG+AGG 0.593761 8_4:-17820582 None:intergenic
TTCCATTCTAACCATCCAGA+AGG 0.594789 8_4:-17823810 None:intergenic
CTATTATGAGTTATAGCACC+AGG 0.598060 8_4:-17823885 None:intergenic
GAAGGAATAGGAGAAGGAGA+AGG 0.598671 8_4:-17820455 None:intergenic
GTGAAGTTCCAAGCTTGAGT+AGG 0.601017 8_4:-17823939 None:intergenic
TGAAACTTATCTTAGTGCTG+TGG 0.613599 8_4:+17820844 Msa1316870:CDS
GAGTTTGATAATTATGGACC+TGG 0.614496 8_4:+17823867 Msa1316870:CDS
AATTATATAGTATTTCACTT+GGG 0.614742 8_4:+17820957 Msa1316870:CDS
ACTGATGTACCTTACACTGA+AGG 0.618967 8_4:+17824001 Msa1316870:CDS
AGAATTACTTAGGAAGACCA+TGG 0.635888 8_4:+17823733 Msa1316870:CDS
ACTGATCCAAATCAGAACAC+AGG 0.639047 8_4:+17823645 Msa1316870:CDS
TAACTCATAATAGGGTACAA+TGG 0.642097 8_4:+17823895 Msa1316870:CDS
CATAATAGGGTACAATGGCA+CGG 0.649224 8_4:+17823900 Msa1316870:CDS
CAAACTGTGTCAGACACGAA+AGG 0.650421 8_4:+17822709 Msa1316870:CDS
ATAACATTCAGAAACACAGC+AGG 0.656808 8_4:+17823376 Msa1316870:CDS
AGGGGTCCGTAGGAGAGGAA+CGG 0.660082 8_4:-17820577 None:intergenic
CATGGTTAAGAGAAGTGGAG+TGG 0.677604 8_4:-17820688 None:intergenic
CATCACAGGAAATCATAGTG+TGG 0.687415 8_4:+17822971 Msa1316870:CDS
GTTGCAAGATTGAAGTACTG+CGG 0.720720 8_4:-17823565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATAAAAAAAAATA+AGG - chr8_4:17821121-17821140 None:intergenic 0.0%
!! ACAAGTTAATAATTTAAATA+TGG + chr8_4:17821829-17821848 Msa1316870:intron 10.0%
!!! GTAATTGTTTTTTAATTTTT+TGG - chr8_4:17822328-17822347 None:intergenic 10.0%
!!! AATAATGATTGAATATTTTA+AGG - chr8_4:17822521-17822540 None:intergenic 10.0%
!!! AAATATTTTTTAATAGTAAG+AGG - chr8_4:17822553-17822572 None:intergenic 10.0%
!! GATTATTAAAAGAAAAATAA+CGG - chr8_4:17823291-17823310 None:intergenic 10.0%
!! AATTATATAGTATTTCACTT+GGG + chr8_4:17820957-17820976 Msa1316870:CDS 15.0%
!!! TTAATTTAGTTACATTTTGA+AGG + chr8_4:17821382-17821401 Msa1316870:intron 15.0%
!!! AAATATATGTGTTCATTTTA+TGG + chr8_4:17821409-17821428 Msa1316870:intron 15.0%
!! AACTAAAACAAATAAAAAGA+AGG + chr8_4:17821777-17821796 Msa1316870:intron 15.0%
!! TAAATATGGAAATAATTCAT+TGG + chr8_4:17821843-17821862 Msa1316870:intron 15.0%
!! GATAATTATGTACATTATAA+AGG + chr8_4:17822410-17822429 Msa1316870:intron 15.0%
!! AAAACTATATAAATAGTGTT+TGG + chr8_4:17822474-17822493 Msa1316870:intron 15.0%
!!! AATCATTATACTTGTTTTGA+TGG + chr8_4:17820872-17820891 Msa1316870:CDS 20.0%
!!! ATCATTATACTTGTTTTGAT+GGG + chr8_4:17820873-17820892 Msa1316870:CDS 20.0%
!! CAATTATATAGTATTTCACT+TGG + chr8_4:17820956-17820975 Msa1316870:CDS 20.0%
!! CAAAACACAAAAATATTGTA+AGG - chr8_4:17821153-17821172 None:intergenic 20.0%
!! TTGTAACAAAACAAAAGTAA+CGG - chr8_4:17821660-17821679 None:intergenic 20.0%
!! AAAAATGCATATGAATATGA+TGG + chr8_4:17821753-17821772 Msa1316870:intron 20.0%
!!! CACAACAATATTTCTTTTTA+TGG - chr8_4:17821985-17822004 None:intergenic 20.0%
!! ATAACGTAAAATATGTTAAC+TGG + chr8_4:17822094-17822113 Msa1316870:intron 20.0%
!! CACATAAATAAATGCATTTA+AGG - chr8_4:17822356-17822375 None:intergenic 20.0%
!! TATTTATGTGTAATGACATT+TGG + chr8_4:17822366-17822385 Msa1316870:intron 20.0%
!! AAATTGTTAATTGAAATTGG+AGG + chr8_4:17822434-17822453 Msa1316870:intron 20.0%
!!! ATCACCAAATAAAAAGTATT+TGG - chr8_4:17822592-17822611 None:intergenic 20.0%
!!! ATTTCAGAATAAAGTTTTGT+CGG - chr8_4:17823232-17823251 None:intergenic 20.0%
!!! AAAACTTTATTCTGAAATGT+CGG + chr8_4:17823234-17823253 Msa1316870:intron 20.0%
!!! ATTAAAAGAAAAATAACGGA+TGG - chr8_4:17823287-17823306 None:intergenic 20.0%
!! GAATTTCAATACAAAATTGT+AGG + chr8_4:17823667-17823686 Msa1316870:CDS 20.0%
!! AATTCAACTAAGAATTACTT+AGG + chr8_4:17823723-17823742 Msa1316870:CDS 20.0%
!! GTTTATTTGCAATCATATAT+TGG + chr8_4:17823774-17823793 Msa1316870:CDS 20.0%
!! TTATTGAGAATTTTCCTAAG+TGG - chr8_4:17820604-17820623 None:intergenic 25.0%
!!! ATAGTTTTTTGGCTTGTTTT+AGG - chr8_4:17820634-17820653 None:intergenic 25.0%
!!! GAATACTTTGGATAGTTTTT+TGG - chr8_4:17820645-17820664 None:intergenic 25.0%
! AATTGTGTAACATTACTCAA+TGG - chr8_4:17820941-17820960 None:intergenic 25.0%
!!! ACCTTAATAAGCTTTTTAAG+TGG - chr8_4:17821070-17821089 None:intergenic 25.0%
!! CTTGGGTTATTGATTAAAAA+TGG - chr8_4:17821195-17821214 None:intergenic 25.0%
! ATTTATAAAGCAATGCTCTT+GGG - chr8_4:17821212-17821231 None:intergenic 25.0%
! CATTTGTCACATTGTAAATA+AGG - chr8_4:17821300-17821319 None:intergenic 25.0%
!!! AATCCTCACATTTTTTTTTG+TGG - chr8_4:17821690-17821709 None:intergenic 25.0%
! TACGCAAATTAAATGTTTAG+TGG + chr8_4:17822033-17822052 Msa1316870:intron 25.0%
! ACGCAAATTAAATGTTTAGT+GGG + chr8_4:17822034-17822053 Msa1316870:intron 25.0%
!! TTTTGAGCAAAAATGTTTAG+TGG + chr8_4:17822066-17822085 Msa1316870:intron 25.0%
! TTTGAGCAAAAATGTTTAGT+GGG + chr8_4:17822067-17822086 Msa1316870:intron 25.0%
!!! AAGAAGAAGTTGATATAACT+GGG - chr8_4:17822272-17822291 None:intergenic 25.0%
!!! TAAGAAGAAGTTGATATAAC+TGG - chr8_4:17822273-17822292 None:intergenic 25.0%
! ATTATATACAAGATGACAAG+TGG - chr8_4:17822300-17822319 None:intergenic 25.0%
! GGCAAATTGTTAATTGAAAT+TGG + chr8_4:17822431-17822450 Msa1316870:intron 25.0%
!!! TTTATATAGTTTTGTGACCA+TGG - chr8_4:17822467-17822486 None:intergenic 25.0%
!!! GTGACCAAATACTTTTTATT+TGG + chr8_4:17822585-17822604 Msa1316870:intron 25.0%
! ATTTCAGAGAAATTCTAACA+TGG - chr8_4:17822619-17822638 None:intergenic 25.0%
! TTTCTTATCTATGTCAATGA+AGG + chr8_4:17822870-17822889 Msa1316870:CDS 25.0%
! AAGAAGAATATCTTGCTTAT+TGG + chr8_4:17822927-17822946 Msa1316870:CDS 25.0%
! AAAGGTTGAAGAATTAAAAG+TGG - chr8_4:17823009-17823028 None:intergenic 25.0%
!!! ACTTTTAATTCTTCAACCTT+TGG + chr8_4:17823008-17823027 Msa1316870:CDS 25.0%
!! GAAAAAATTTGACTTACCAA+AGG - chr8_4:17823027-17823046 None:intergenic 25.0%
! TTAAGCAAATAAAGTAAGGT+CGG - chr8_4:17823319-17823338 None:intergenic 25.0%
! TGCATTAAGCAAATAAAGTA+AGG - chr8_4:17823323-17823342 None:intergenic 25.0%
!! TATGGTGAGTTTGATAATTA+TGG + chr8_4:17823861-17823880 Msa1316870:CDS 25.0%
!! ACTGTGCTTAATTTTACATT+GGG + chr8_4:17823960-17823979 Msa1316870:CDS 25.0%
!! AATTTTACATTGGGAATACT+TGG + chr8_4:17823969-17823988 Msa1316870:CDS 25.0%
!! TAATGTTGATTTGCATGCTT+TGG - chr8_4:17820522-17820541 None:intergenic 30.0%
GAGAAAGTCTTTGAATACTT+TGG - chr8_4:17820657-17820676 None:intergenic 30.0%
!!! TTATACTTGTTTTGATGGGT+TGG + chr8_4:17820877-17820896 Msa1316870:CDS 30.0%
ATATAGTATTTCACTTGGGT+TGG + chr8_4:17820961-17820980 Msa1316870:CDS 30.0%
! ATTTTTACTCAAAGCTTGAG+TGG - chr8_4:17820987-17821006 None:intergenic 30.0%
GCCACTTAAAAAGCTTATTA+AGG + chr8_4:17821066-17821085 Msa1316870:CDS 30.0%
CATTTATAAAGCAATGCTCT+TGG - chr8_4:17821213-17821232 None:intergenic 30.0%
AGCATTGCTTTATAAATGTG+AGG + chr8_4:17821215-17821234 Msa1316870:intron 30.0%
TGTGAGGATTAAAATGATCT+TGG + chr8_4:17821231-17821250 Msa1316870:intron 30.0%
ATTAATAGTCCCATGATGTA+AGG - chr8_4:17821367-17821386 None:intergenic 30.0%
! ATGTGTTCATTTTATGGCTA+AGG + chr8_4:17821415-17821434 Msa1316870:intron 30.0%
TGACAATGTGTTTATAAGTG+GGG - chr8_4:17821576-17821595 None:intergenic 30.0%
CTGACAATGTGTTTATAAGT+GGG - chr8_4:17821577-17821596 None:intergenic 30.0%
ACACCACAAAAAAAAATGTG+AGG + chr8_4:17821684-17821703 Msa1316870:intron 30.0%
TTTGTTTGTTTGTGCCATAA+TGG + chr8_4:17822212-17822231 Msa1316870:intron 30.0%
!! AGAAGAAGTTGATATAACTG+GGG - chr8_4:17822271-17822290 None:intergenic 30.0%
CTTAAAGAAAGCGAAAATAG+AGG + chr8_4:17822735-17822754 Msa1316870:CDS 30.0%
TATGTTATTGTGAGTCTTGA+TGG + chr8_4:17822774-17822793 Msa1316870:CDS 30.0%
ACAGAAAACTTCACTTCTAT+TGG + chr8_4:17822798-17822817 Msa1316870:CDS 30.0%
CAGAAAACTTCACTTCTATT+GGG + chr8_4:17822799-17822818 Msa1316870:CDS 30.0%
AGAAAACTTCACTTCTATTG+GGG + chr8_4:17822800-17822819 Msa1316870:CDS 30.0%
AATATCTTGCTTATTGGTGA+TGG + chr8_4:17822933-17822952 Msa1316870:CDS 30.0%
ATTAATAAGACTTGCATCAC+AGG + chr8_4:17822957-17822976 Msa1316870:CDS 30.0%
! CATTTTTGCAAGAAAACCAA+TGG + chr8_4:17823587-17823606 Msa1316870:CDS 30.0%
!!! GCATTTTTTTGATTTGCCAT+TGG - chr8_4:17823606-17823625 None:intergenic 30.0%
ATTTAATTCAACCTTCTGGA+TGG + chr8_4:17823799-17823818 Msa1316870:CDS 30.0%
!!! GGGTTAGATACACTTTTTTA+TGG + chr8_4:17823843-17823862 Msa1316870:CDS 30.0%
!! TGGTGCTATAACTCATAATA+GGG + chr8_4:17823887-17823906 Msa1316870:CDS 30.0%
TAACTCATAATAGGGTACAA+TGG + chr8_4:17823895-17823914 Msa1316870:CDS 30.0%
! CACTGTGCTTAATTTTACAT+TGG + chr8_4:17823959-17823978 Msa1316870:CDS 30.0%
!! AAGAATGAAGGAAGTTGATG+AGG - chr8_4:17820246-17820265 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGAAG+AGG - chr8_4:17820321-17820340 None:intergenic 35.0%
GAAGAAGAATGAGAATGAGA+AGG - chr8_4:17820392-17820411 None:intergenic 35.0%
! AGAATGGAACGACATAGTTT+TGG - chr8_4:17820548-17820567 None:intergenic 35.0%
! AGAATTTTCCTAAGTGGTAG+GGG - chr8_4:17820598-17820617 None:intergenic 35.0%
! GAGAATTTTCCTAAGTGGTA+GGG - chr8_4:17820599-17820618 None:intergenic 35.0%
! TGAGAATTTTCCTAAGTGGT+AGG - chr8_4:17820600-17820619 None:intergenic 35.0%
CTAAGTAATCTACATTGAGC+TGG - chr8_4:17820751-17820770 None:intergenic 35.0%
! CAGCTGATTTAAGTTCATCT+CGG - chr8_4:17820781-17820800 None:intergenic 35.0%
! TTTTAACAACACCGATGTGT+TGG + chr8_4:17820811-17820830 Msa1316870:CDS 35.0%
TGAAACTTATCTTAGTGCTG+TGG + chr8_4:17820844-17820863 Msa1316870:CDS 35.0%
! TGTTCATTTTATGGCTAAGG+AGG + chr8_4:17821418-17821437 Msa1316870:intron 35.0%
! GTTCATTTTATGGCTAAGGA+GGG + chr8_4:17821419-17821438 Msa1316870:intron 35.0%
! TTTAGAGTCTCTGCTTCTAA+AGG + chr8_4:17821481-17821500 Msa1316870:intron 35.0%
AAACTCTTAGAAATCGTGGT+TGG + chr8_4:17821505-17821524 Msa1316870:intron 35.0%
AACTCTTAGAAATCGTGGTT+GGG + chr8_4:17821506-17821525 Msa1316870:intron 35.0%
TAACTCAACCCCACAAAAAT+CGG + chr8_4:17821531-17821550 Msa1316870:intron 35.0%
GACAATGTGTTTATAAGTGG+GGG - chr8_4:17821575-17821594 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG - chr8_4:17821578-17821597 None:intergenic 35.0%
CCACTTATAAACACATTGTC+AGG + chr8_4:17821575-17821594 Msa1316870:intron 35.0%
ATTTCTTAACATGTGCCCTA+GGG + chr8_4:17821944-17821963 Msa1316870:intron 35.0%
TAGTGTTAACTTATGCCCTA+GGG - chr8_4:17821962-17821981 None:intergenic 35.0%
AAGTTAGCTAAAACCTAGGT+TGG - chr8_4:17822146-17822165 None:intergenic 35.0%
TCAGAAGTTAGCTAAAACCT+AGG - chr8_4:17822150-17822169 None:intergenic 35.0%
!! AAGTTGATATAACTGGGGTA+GGG - chr8_4:17822266-17822285 None:intergenic 35.0%
!! AAATTGGAGGTATTCTTCCA+TGG + chr8_4:17822447-17822466 Msa1316870:intron 35.0%
! TGTCAATGAAGGAGTATATG+AGG + chr8_4:17822881-17822900 Msa1316870:CDS 35.0%
GTTCGTGTATATGCTTCATT+AGG - chr8_4:17823089-17823108 None:intergenic 35.0%
AATGTCGGTACTACATAACA+TGG + chr8_4:17823249-17823268 Msa1316870:intron 35.0%
AAATAAAGTAAGGTCGGAGA+CGG - chr8_4:17823313-17823332 None:intergenic 35.0%
ATAACATTCAGAAACACAGC+AGG + chr8_4:17823376-17823395 Msa1316870:CDS 35.0%
TGTAGAATTGTCTGAGAGAA+TGG - chr8_4:17823497-17823516 None:intergenic 35.0%
TACAGAGAATGTGACATCTA+TGG + chr8_4:17823513-17823532 Msa1316870:CDS 35.0%
!! GGCACAGTTGATTTCATTTT+CGG + chr8_4:17823534-17823553 Msa1316870:CDS 35.0%
AAAAATGCTATAACAGCGCA+AGG + chr8_4:17823618-17823637 Msa1316870:CDS 35.0%
GAAATTCCTGTGTTCTGATT+TGG - chr8_4:17823654-17823673 None:intergenic 35.0%
AGAATTACTTAGGAAGACCA+TGG + chr8_4:17823733-17823752 Msa1316870:CDS 35.0%
GGTGATTTAATTCAACCTTC+TGG + chr8_4:17823795-17823814 Msa1316870:CDS 35.0%
TTAGAATGGAATGGAACAGT+TGG + chr8_4:17823822-17823841 Msa1316870:CDS 35.0%
TAGAATGGAATGGAACAGTT+GGG + chr8_4:17823823-17823842 Msa1316870:CDS 35.0%
! GAGTTTGATAATTATGGACC+TGG + chr8_4:17823867-17823886 Msa1316870:CDS 35.0%
CTATTATGAGTTATAGCACC+AGG - chr8_4:17823888-17823907 None:intergenic 35.0%
!! CTGGTGCTATAACTCATAAT+AGG + chr8_4:17823886-17823905 Msa1316870:CDS 35.0%
AAATGTAGTCCTTCAGTGTA+AGG - chr8_4:17824013-17824032 None:intergenic 35.0%
GAAGGGTAAAATGAGGAAGA+GGG - chr8_4:17820282-17820301 None:intergenic 40.0%
AAGAAGAAGAGGTTTGTGCT+TGG - chr8_4:17820310-17820329 None:intergenic 40.0%
GAAGAAGAATGAGAAGGAGA+AGG - chr8_4:17820362-17820381 None:intergenic 40.0%
GAAGGAGAAGAAGAATGAGA+AGG - chr8_4:17820368-17820387 None:intergenic 40.0%
GAATGAGAATGAGAAGGAGA+AGG - chr8_4:17820386-17820405 None:intergenic 40.0%
GAAGAAGAATGAGAAGGAGA+AGG - chr8_4:17820362-17820381 None:intergenic 40.0%
GTAGGAGAAGAAGAATGAGA+AGG - chr8_4:17820434-17820453 None:intergenic 40.0%
GAAGAAGAAGTAGGAGTAGA+AGG - chr8_4:17820500-17820519 None:intergenic 40.0%
!! CATGCTTTGGAAGAAGAAGT+AGG - chr8_4:17820509-17820528 None:intergenic 40.0%
! AACCTTTTCCACCAACACAT+CGG - chr8_4:17820825-17820844 None:intergenic 40.0%
CAAACAAGGTCTTCCTACTA+AGG + chr8_4:17821027-17821046 Msa1316870:CDS 40.0%
TCTTCCTACTAAGGCTTACA+AGG + chr8_4:17821036-17821055 Msa1316870:CDS 40.0%
TCCAGATTTCAAGGAACACA+GGG - chr8_4:17821341-17821360 None:intergenic 40.0%
TTCCAGATTTCAAGGAACAC+AGG - chr8_4:17821342-17821361 None:intergenic 40.0%
GTAAGGCTTTCCAGATTTCA+AGG - chr8_4:17821350-17821369 None:intergenic 40.0%
ATCTGGAAAGCCTTACATCA+TGG + chr8_4:17821354-17821373 Msa1316870:intron 40.0%
TCTGGAAAGCCTTACATCAT+GGG + chr8_4:17821355-17821374 Msa1316870:intron 40.0%
AGGCAAACTCTTAGAAATCG+TGG + chr8_4:17821501-17821520 Msa1316870:intron 40.0%
! GATTTTTGTGGGGTTGAGTT+AGG - chr8_4:17821532-17821551 None:intergenic 40.0%
! TAACTTGTATCCTGCACTCA+AGG + chr8_4:17821805-17821824 Msa1316870:intron 40.0%
CATTTCTTAACATGTGCCCT+AGG + chr8_4:17821943-17821962 Msa1316870:intron 40.0%
GTAGTGTTAACTTATGCCCT+AGG - chr8_4:17821963-17821982 None:intergenic 40.0%
ATGTTAACTGGCTAGATCCA+AGG + chr8_4:17822106-17822125 Msa1316870:intron 40.0%
GATCCAAGGAGGTTAAATTC+TGG + chr8_4:17822120-17822139 Msa1316870:intron 40.0%
TGCACGTGTTCTTTCCATTA+TGG - chr8_4:17822229-17822248 None:intergenic 40.0%
!! GAAGTTGATATAACTGGGGT+AGG - chr8_4:17822267-17822286 None:intergenic 40.0%
TCTTCTGCCTTCAAATTGTC+AGG - chr8_4:17822843-17822862 None:intergenic 40.0%
GACAATTTGAAGGCAGAAGA+TGG + chr8_4:17822843-17822862 Msa1316870:CDS 40.0%
CATCACAGGAAATCATAGTG+TGG + chr8_4:17822971-17822990 Msa1316870:CDS 40.0%
GGAAATCATAGTGTGGTAGA+TGG + chr8_4:17822978-17822997 Msa1316870:CDS 40.0%
ATCATAGTGTGGTAGATGGT+TGG + chr8_4:17822982-17823001 Msa1316870:CDS 40.0%
! GTTGGTGTCTAATACTGAGA+TGG - chr8_4:17823195-17823214 None:intergenic 40.0%
! TCGGTGTTCAACATAAGTGT+TGG - chr8_4:17823213-17823232 None:intergenic 40.0%
! TTGCTTAATGCAGCTGTTTC+TGG + chr8_4:17823331-17823350 Msa1316870:intron 40.0%
TGGAGAGAGATTTATAGCAG+TGG + chr8_4:17823351-17823370 Msa1316870:CDS 40.0%
TGTTTCTTACTGCTACTGCT+TGG - chr8_4:17823413-17823432 None:intergenic 40.0%
GAAACTGCAACGGTAGAATA+TGG - chr8_4:17823448-17823467 None:intergenic 40.0%
AATGGACATAGAGTGTGTCT+TGG - chr8_4:17823479-17823498 None:intergenic 40.0%
! TGATTTCATTTTCGGCAACG+CGG + chr8_4:17823542-17823561 Msa1316870:CDS 40.0%
!! GTTGCAAGATTGAAGTACTG+CGG - chr8_4:17823568-17823587 None:intergenic 40.0%
ACTGATCCAAATCAGAACAC+AGG + chr8_4:17823645-17823664 Msa1316870:CDS 40.0%
GATTGAAGCTGCAGATGATT+TGG + chr8_4:17823689-17823708 Msa1316870:CDS 40.0%
! GACCATGGAAAGTGTATTCA+AGG + chr8_4:17823748-17823767 Msa1316870:CDS 40.0%
GTCCTTGAATACACTTTCCA+TGG - chr8_4:17823753-17823772 None:intergenic 40.0%
AACCTTCTGGATGGTTAGAA+TGG + chr8_4:17823808-17823827 Msa1316870:CDS 40.0%
TTCCATTCTAACCATCCAGA+AGG - chr8_4:17823813-17823832 None:intergenic 40.0%
TCTGGATGGTTAGAATGGAA+TGG + chr8_4:17823813-17823832 Msa1316870:CDS 40.0%
CATAATAGGGTACAATGGCA+CGG + chr8_4:17823900-17823919 Msa1316870:CDS 40.0%
TAATGACTCCTACTCAAGCT+TGG + chr8_4:17823931-17823950 Msa1316870:CDS 40.0%
GTGTAAGGTACATCAGTATC+AGG - chr8_4:17823998-17824017 None:intergenic 40.0%
ACTGATGTACCTTACACTGA+AGG + chr8_4:17824001-17824020 Msa1316870:CDS 40.0%
GAGAGGAAGGAGAAGAATGA+AGG - chr8_4:17820258-17820277 None:intergenic 45.0%
AAAATGAGGAAGAGGGAGAG+AGG - chr8_4:17820275-17820294 None:intergenic 45.0%
GGAAGGGTAAAATGAGGAAG+AGG - chr8_4:17820283-17820302 None:intergenic 45.0%
AAGAAGAGGTTTGTGCTTGG+AGG - chr8_4:17820307-17820326 None:intergenic 45.0%
TGAGAAGGAGAAGGAGAAGA+AGG - chr8_4:17820353-17820372 None:intergenic 45.0%
GAATGAGAAGGAGAAGGAGA+AGG - chr8_4:17820356-17820375 None:intergenic 45.0%
ATAGGAGAAGGAGAAGGAGT+AGG - chr8_4:17820452-17820471 None:intergenic 45.0%
GAAGGAATAGGAGAAGGAGA+AGG - chr8_4:17820458-17820477 None:intergenic 45.0%
GAAGTAGGAGTAGAAGGAGA+AGG - chr8_4:17820494-17820513 None:intergenic 45.0%
CATGGTTAAGAGAAGTGGAG+TGG - chr8_4:17820691-17820710 None:intergenic 45.0%
TCTTAACCATGCCGAGATTG+CGG + chr8_4:17820700-17820719 Msa1316870:CDS 45.0%
TAACAACACCGATGTGTTGG+TGG + chr8_4:17820814-17820833 Msa1316870:CDS 45.0%
AAGCGTAAGACTCGCAAACA+AGG + chr8_4:17821013-17821032 Msa1316870:CDS 45.0%
CTGACCTTGTAAGCCTTAGT+AGG - chr8_4:17821043-17821062 None:intergenic 45.0%
!! CTCACAAGCCGATTTTTGTG+GGG - chr8_4:17821542-17821561 None:intergenic 45.0%
!! CCTCACAAGCCGATTTTTGT+GGG - chr8_4:17821543-17821562 None:intergenic 45.0%
!! ACCTCACAAGCCGATTTTTG+TGG - chr8_4:17821544-17821563 None:intergenic 45.0%
!! AAAAATCGGCTTGTGAGGTG+AGG + chr8_4:17821545-17821564 Msa1316870:intron 45.0%
TTAAGAGTCCCACATCAGAC+AGG - chr8_4:17821607-17821626 None:intergenic 45.0%
!! TTAACTTGTGCCTTGAGTGC+AGG - chr8_4:17821818-17821837 None:intergenic 45.0%
TTAACTGGCTAGATCCAAGG+AGG + chr8_4:17822109-17822128 Msa1316870:intron 45.0%
TGGCCAGAATTTAACCTCCT+TGG - chr8_4:17822126-17822145 None:intergenic 45.0%
GGTTAAATTCTGGCCAACCT+AGG + chr8_4:17822130-17822149 Msa1316870:intron 45.0%
TGAGTAGTATCTCAGTCACG+TGG + chr8_4:17822167-17822186 Msa1316870:intron 45.0%
TTGATATAACTGGGGTAGGG+TGG - chr8_4:17822263-17822282 None:intergenic 45.0%
CAAACTGTGTCAGACACGAA+AGG + chr8_4:17822709-17822728 Msa1316870:CDS 45.0%
TGCTGCACCTGACAATTTGA+AGG + chr8_4:17822833-17822852 Msa1316870:CDS 45.0%
TTCTACCGTTGCAGTTTCGA+AGG + chr8_4:17823450-17823469 Msa1316870:intron 45.0%
GGTATCCTTCGAAACTGCAA+CGG - chr8_4:17823458-17823477 None:intergenic 45.0%
GTGAAGTTCCAAGCTTGAGT+AGG - chr8_4:17823942-17823961 None:intergenic 45.0%
!! TTATAAAGAATAATATTAAA+CGG + chr8_4:17821725-17821744 Msa1316870:intron 5.0%
!!! TTAATTTTTTTTAATTGTTA+CGG - chr8_4:17823144-17823163 None:intergenic 5.0%
GGAGGAGGAAGGGTAAAATG+AGG - chr8_4:17820289-17820308 None:intergenic 50.0%
GTTTGTGCTTGGAGGAGGAA+GGG - chr8_4:17820299-17820318 None:intergenic 50.0%
AAGAGGTTTGTGCTTGGAGG+AGG - chr8_4:17820304-17820323 None:intergenic 50.0%
GAAGGAGAAGGAGAAGGAGA+AGG - chr8_4:17820410-17820429 None:intergenic 50.0%
GGAGGAGAAGGAATAGGAGA+AGG - chr8_4:17820464-17820483 None:intergenic 50.0%
GTAGGAGTAGAAGGAGAAGG+AGG - chr8_4:17820491-17820510 None:intergenic 50.0%
!! GGAACGGATTGAGGAGAGAA+TGG - chr8_4:17820564-17820583 None:intergenic 50.0%
CTCAATCCGTTCCTCTCCTA+CGG + chr8_4:17820571-17820590 Msa1316870:CDS 50.0%
CTCGGCATGGTTAAGAGAAG+TGG - chr8_4:17820696-17820715 None:intergenic 50.0%
ATCGTCTAGTGCCGCAATCT+CGG - chr8_4:17820714-17820733 None:intergenic 50.0%
! CACCGATGTGTTGGTGGAAA+AGG + chr8_4:17820820-17820839 Msa1316870:CDS 50.0%
GCCCTGTGTTCCTTGAAATC+TGG + chr8_4:17821337-17821356 Msa1316870:intron 50.0%
CTGTGAGATGAGTGAGCACA+TGG - chr8_4:17821448-17821467 None:intergenic 50.0%
CATGTGCTCACTCATCTCAC+AGG + chr8_4:17821446-17821465 Msa1316870:intron 50.0%
!! CCCACAAAAATCGGCTTGTG+AGG + chr8_4:17821540-17821559 Msa1316870:intron 50.0%
!! TGCTACTGCTTGGTGCTTTG+AGG - chr8_4:17823403-17823422 None:intergenic 50.0%
TGAGGAAGAGGGAGAGAGGA+AGG - chr8_4:17820271-17820290 None:intergenic 55.0%
GGTTTGTGCTTGGAGGAGGA+AGG - chr8_4:17820300-17820319 None:intergenic 55.0%
GGAGGAGGAGGAGAAGGAAT+AGG - chr8_4:17820470-17820489 None:intergenic 55.0%
GTAGAAGGAGAAGGAGGAGG+AGG - chr8_4:17820485-17820504 None:intergenic 55.0%
GGAGTAGAAGGAGAAGGAGG+AGG - chr8_4:17820488-17820507 None:intergenic 55.0%
!! CGTAGGAGAGGAACGGATTG+AGG - chr8_4:17820573-17820592 None:intergenic 55.0%
AGGCCTTCTCCTGTCTGATG+TGG + chr8_4:17821595-17821614 Msa1316870:intron 55.0%
GGCCTTCTCCTGTCTGATGT+GGG + chr8_4:17821596-17821615 Msa1316870:intron 55.0%
GTCCCACATCAGACAGGAGA+AGG - chr8_4:17821601-17821620 None:intergenic 55.0%
GAAGGAGGAGGAGGAGGAGA+AGG - chr8_4:17820476-17820495 None:intergenic 60.0%
GAAGGAGAAGGAGGAGGAGG+AGG - chr8_4:17820482-17820501 None:intergenic 60.0%
AGGGGTCCGTAGGAGAGGAA+CGG - chr8_4:17820580-17820599 None:intergenic 60.0%
CCTAAGTGGTAGGGGTCCGT+AGG - chr8_4:17820590-17820609 None:intergenic 60.0%
CCTACGGACCCCTACCACTT+AGG + chr8_4:17820587-17820606 Msa1316870:CDS 60.0%
CTAGTGCCGCAATCTCGGCA+TGG - chr8_4:17820709-17820728 None:intergenic 60.0%
GTGGTAGGGGTCCGTAGGAG+AGG - chr8_4:17820585-17820604 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 17820236 17824034 17820236 ID=Msa1316870;Name=Msa1316870
chr8_4 mRNA 17820236 17824034 17820236 ID=Msa1316870-mRNA-1;Parent=Msa1316870;Name=Msa1316870-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.75|1|1|4|0|602
chr8_4 exon 17820236 17821087 17820236 ID=Msa1316870-mRNA-1:exon:6545;Parent=Msa1316870-mRNA-1
chr8_4 exon 17822675 17823029 17822675 ID=Msa1316870-mRNA-1:exon:6546;Parent=Msa1316870-mRNA-1
chr8_4 exon 17823344 17823416 17823344 ID=Msa1316870-mRNA-1:exon:6547;Parent=Msa1316870-mRNA-1
chr8_4 exon 17823506 17824034 17823506 ID=Msa1316870-mRNA-1:exon:6548;Parent=Msa1316870-mRNA-1
chr8_4 CDS 17820236 17821087 17820236 ID=Msa1316870-mRNA-1:cds;Parent=Msa1316870-mRNA-1
chr8_4 CDS 17822675 17823029 17822675 ID=Msa1316870-mRNA-1:cds;Parent=Msa1316870-mRNA-1
chr8_4 CDS 17823344 17823416 17823344 ID=Msa1316870-mRNA-1:cds;Parent=Msa1316870-mRNA-1
chr8_4 CDS 17823506 17824034 17823506 ID=Msa1316870-mRNA-1:cds;Parent=Msa1316870-mRNA-1
Gene Sequence

>Msa1316870

ATGTCAACCTCATCAACTTCCTTCATTCTTCTCCTTCCTCTCTCCCTCTTCCTCATTTTACCCTTCCTCCTCCAAGCACAAACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTCCTTCTCCTTCTCATTCTTCTTCTCCTTCTCCTTCTCATTCTCATTCTTCTTCTCCTTCTCCTTCTCCTTCTCCTTCTCATTCTTCTTCTCCTACTCCTTCTCCTTCTCCTATTCCTTCTCCTCCTCCTCCTCCTTCTCCTTCTACTCCTACTTCTTCTTCCAAAGCATGCAAATCAACATTATATCCAAAACTATGTCGTTCCATTCTCTCCTCAATCCGTTCCTCTCCTACGGACCCCTACCACTTAGGAAAATTCTCAATAAAACAAAGCCTAAAACAAGCCAAAAAACTATCCAAAGTATTCAAAGACTTTCTCAAAAAACATCACCACTCCACTTCTCTTAACCATGCCGAGATTGCGGCACTAGACGATTGTAGTGAACTAAACCAGCTCAATGTAGATTACTTAGAGTTAGTCCGAGATGAACTTAAATCAGCTGATTCTTCATCTTTTAACAACACCGATGTGTTGGTGGAAAAGGTTGAAACTTATCTTAGTGCTGTGGCTACTAATCATTATACTTGTTTTGATGGGTTGGTTGTGACTAAAAGTAACATTGCTAATGCACTTGCTGTGCCATTGAGTAATGTTACACAATTATATAGTATTTCACTTGGGTTGGCCACTCAAGCTTTGAGTAAAAATATTAAGAAGCGTAAGACTCGCAAACAAGGTCTTCCTACTAAGGCTTACAAGGTCAGACAGCCACTTAAAAAGCTTATTAAGCTTCTTCACACAAAACACAGTTGTAATAACTCATCAAACTGTGTCAGACACGAAAGGATTCTTAAAGAAAGCGAAAATAGAGGAATTTTACTGAAAGAATATGTTATTGTGAGTCTTGATGGAACAGAAAACTTCACTTCTATTGGGGAAGCTATTGATGCTGCACCTGACAATTTGAAGGCAGAAGATGGCTATTTTCTTATCTATGTCAATGAAGGAGTATATGAGGAATATGTTACTATTACAAAACATAAGAAGAATATCTTGCTTATTGGTGATGGTATTAATAAGACTTGCATCACAGGAAATCATAGTGTGGTAGATGGTTGGACCACTTTTAATTCTTCAACCTTTGCTGTTTCTGGAGAGAGATTTATAGCAGTGGACATAACATTCAGAAACACAGCAGGTCCTCAAAGCACCAAGCAACAATTCTACAGAGAATGTGACATCTATGGCACAGTTGATTTCATTTTCGGCAACGCGGCCGCAGTACTTCAATCTTGCAACATTTTTGCAAGAAAACCAATGGCAAATCAAAAAAATGCTATAACAGCGCAAGGTAGAACTGATCCAAATCAGAACACAGGAATTTCAATACAAAATTGTAGGATTGAAGCTGCAGATGATTTGGCTGAAGATTTGAATTCAACTAAGAATTACTTAGGAAGACCATGGAAAGTGTATTCAAGGACTGTTTATTTGCAATCATATATTGGTGATTTAATTCAACCTTCTGGATGGTTAGAATGGAATGGAACAGTTGGGTTAGATACACTTTTTTATGGTGAGTTTGATAATTATGGACCTGGTGCTATAACTCATAATAGGGTACAATGGCACGGTTACAATTTAATGACTCCTACTCAAGCTTGGAACTTCACTGTGCTTAATTTTACATTGGGAATACTTGGCTTCCTGATACTGATGTACCTTACACTGAAGGACTACATTTAG
Protein sequence

>Msa1316870

MSTSSTSFILLLPLSLFLILPFLLQAQTSSSSSSSSSSPSSPSPSHSSSPSPSHSHSSSPSPSPSPSHSSSPTPSPSPIPSPPPPPSPSTPTSSSKACKSTLYPKLCRSILSSIRSSPTDPYHLGKFSIKQSLKQAKKLSKVFKDFLKKHHHSTSLNHAEIAALDDCSELNQLNVDYLELVRDELKSADSSSFNNTDVLVEKVETYLSAVATNHYTCFDGLVVTKSNIANALAVPLSNVTQLYSISLGLATQALSKNIKKRKTRKQGLPTKAYKVRQPLKKLIKLLHTKHSCNNSSNCVRHERILKESENRGILLKEYVIVSLDGTENFTSIGEAIDAAPDNLKAEDGYFLIYVNEGVYEEYVTITKHKKNILLIGDGINKTCITGNHSVVDGWTTFNSSTFAVSGERFIAVDITFRNTAGPQSTKQQFYRECDIYGTVDFIFGNAAAVLQSCNIFARKPMANQKNAITAQGRTDPNQNTGISIQNCRIEAADDLAEDLNSTKNYLGRPWKVYSRTVYLQSYIGDLIQPSGWLEWNGTVGLDTLFYGEFDNYGPGAITHNRVQWHGYNLMTPTQAWNFTVLNFTLGILGFLILMYLTLKDYI*