AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1187900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1187900 MtrunA17_Chr8g0354911 97.428 311 7 1 94 403 76 386 0.0 601
Msa1187900 MtrunA17_Chr3g0080381 71.154 312 87 2 95 403 91 402 2.47e-151 442
Msa1187900 MtrunA17_Chr7g0269511 41.194 335 152 10 83 400 29 335 7.00e-65 217
Msa1187900 MtrunA17_Chr7g0269531 40.317 315 157 11 96 400 43 336 4.83e-56 193
Msa1187900 MtrunA17_Chr7g0269521 37.821 312 169 8 96 400 40 333 1.22e-55 192
Msa1187900 MtrunA17_Chr1g0175661 38.462 312 166 9 96 400 37 329 1.92e-54 189
Msa1187900 MtrunA17_Chr1g0195331 36.624 314 171 10 96 400 32 326 3.15e-47 169
Msa1187900 MtrunA17_Chr1g0195301 36.306 314 172 10 96 400 32 326 1.37e-46 168
Msa1187900 MtrunA17_Chr1g0195321 36.306 314 172 10 96 400 32 326 1.37e-46 168
Msa1187900 MtrunA17_Chr1g0195351 36.306 314 172 10 96 400 32 326 1.45e-46 167
Msa1187900 MtrunA17_Chr1g0192331 33.022 321 170 7 83 400 18 296 2.36e-40 150
Msa1187900 MtrunA17_Chr4g0069881 32.903 310 160 11 96 403 44 307 3.19e-30 122
Msa1187900 MtrunA17_Chr7g0269541 29.221 308 187 9 95 400 48 326 9.78e-30 120
Msa1187900 MtrunA17_Chr7g0272151 28.743 334 177 12 96 406 63 358 5.07e-25 107
Msa1187900 MtrunA17_Chr2g0302021 33.068 251 118 10 161 404 92 299 4.19e-24 104
Msa1187900 MtrunA17_Chr1g0194081 28.746 327 204 9 80 400 32 335 1.22e-23 103
Msa1187900 MtrunA17_Chr7g0272141 30.040 253 151 7 153 404 98 325 1.75e-23 102
Msa1187900 MtrunA17_Chr3g0080391 30.189 318 179 12 90 400 68 349 3.97e-23 101
Msa1187900 MtrunA17_Chr7g0233771 31.984 247 120 7 158 399 118 321 9.28e-23 100
Msa1187900 MtrunA17_Chr8g0354901 29.221 308 186 8 95 400 79 356 1.31e-22 100
Msa1187900 MtrunA17_Chr1g0147051 29.080 337 189 12 87 404 76 381 1.85e-22 99.8
Msa1187900 MtrunA17_Chr8g0345281 30.032 313 186 10 95 399 71 358 8.20e-21 94.7
Msa1187900 MtrunA17_Chr8g0391311 27.964 329 164 12 95 401 35 312 2.35e-20 93.2
Msa1187900 MtrunA17_Chr4g0067611 26.625 323 172 9 96 400 63 338 2.44e-20 93.2
Msa1187900 MtrunA17_Chr4g0069891 30.350 257 131 7 158 400 143 365 4.25e-20 92.4
Msa1187900 MtrunA17_Chr4g0069861 29.032 310 140 12 108 400 41 287 4.64e-20 92.0
Msa1187900 MtrunA17_Chr7g0233831 29.960 247 125 6 158 399 119 322 7.17e-20 91.7
Msa1187900 MtrunA17_Chr1g0192311 26.708 322 190 9 87 399 53 337 1.77e-19 90.5
Msa1187900 MtrunA17_Chr1g0192281 26.708 322 190 9 87 399 53 337 1.77e-19 90.5
Msa1187900 MtrunA17_Chr8g0391281 28.399 331 170 15 95 407 33 314 5.89e-19 87.0
Msa1187900 MtrunA17_Chr1g0192321 26.087 322 208 9 87 399 51 351 7.12e-19 89.0
Msa1187900 MtrunA17_Chr4g0000121 25.926 324 190 9 87 399 40 324 4.05e-18 86.3
Msa1187900 MtrunA17_Chr4g0069841 28.623 276 141 9 135 404 65 290 4.97e-18 85.9
Msa1187900 MtrunA17_Chr1g0192301 25.455 330 184 8 87 399 58 342 5.09e-18 86.3
Msa1187900 MtrunA17_Chr7g0233801 28.112 249 121 7 161 399 121 321 8.63e-18 85.5
Msa1187900 MtrunA17_Chr4g0011791 29.114 316 145 13 96 399 33 281 1.45e-17 84.7
Msa1187900 MtrunA17_Chr1g0194091 28.731 268 121 10 161 400 108 333 1.64e-17 84.7
Msa1187900 MtrunA17_Chr7g0270691 26.752 314 185 9 96 400 43 320 1.77e-17 84.3
Msa1187900 MtrunA17_Chr3g0126771 28.012 332 189 11 89 404 74 371 2.30e-17 84.3
Msa1187900 MtrunA17_Chr8g0384121 25.926 324 197 9 80 399 44 328 5.67e-17 82.8
Msa1187900 MtrunA17_Chr8g0391291 26.220 328 169 12 95 400 33 309 1.18e-16 82.0
Msa1187900 MtrunA17_Chr4g0067601 26.562 320 178 10 96 401 63 339 1.36e-16 81.6
Msa1187900 MtrunA17_Chr4g0011751 30.435 253 125 10 151 400 55 259 2.43e-16 80.9
Msa1187900 MtrunA17_Chr4g0011771 31.731 312 145 14 96 399 32 283 8.73e-16 79.0
Msa1187900 MtrunA17_Chr4g0018371 30.802 237 115 10 180 401 107 309 1.81e-15 78.2
Msa1187900 MtrunA17_Chr7g0270651 26.506 332 179 12 96 400 46 339 2.03e-15 78.2
Msa1187900 MtrunA17_Chr8g0345211 27.711 332 172 13 88 400 72 354 2.38e-15 77.8
Msa1187900 MtrunA17_Chr7g0270661 26.807 332 178 10 96 400 46 339 5.20e-15 77.0
Msa1187900 MtrunA17_Chr7g0270671 26.807 332 178 10 96 400 46 339 5.20e-15 77.0
Msa1187900 MtrunA17_Chr2g0295531 25.397 315 178 13 96 401 47 313 9.36e-15 76.3
Msa1187900 MtrunA17_Chr7g0270631 26.087 322 193 13 96 400 582 875 1.52e-14 75.9
Msa1187900 MtrunA17_Chr7g0270631 25.000 332 184 11 96 400 34 327 9.90e-14 73.2
Msa1187900 MtrunA17_Chr5g0437831 45.946 74 37 1 318 391 74 144 4.02e-14 73.6
Msa1187900 MtrunA17_Chr2g0295541 25.234 321 188 13 96 406 60 338 7.89e-14 73.2
Msa1187900 MtrunA17_Chr7g0234731 36.538 104 61 2 299 402 219 317 3.92e-13 69.7
Msa1187900 MtrunA17_Chr3g0129921 25.526 333 199 13 81 401 35 330 1.14e-12 69.7
Msa1187900 MtrunA17_Chr3g0079361 36.893 103 60 2 299 401 200 297 1.24e-12 69.3
Msa1187900 MtrunA17_Chr3g0079341 36.893 103 60 2 299 401 200 297 1.61e-12 68.9
Msa1187900 MtrunA17_Chr3g0079351 36.893 103 60 2 299 401 200 297 1.80e-12 68.9
Msa1187900 MtrunA17_Chr8g0380581 44.330 97 48 3 308 400 53 147 1.87e-12 68.2
Msa1187900 MtrunA17_Chr3g0090091 35.922 103 61 2 299 401 201 298 4.36e-12 67.8
Msa1187900 MtrunA17_Chr2g0295551 24.611 321 190 13 96 406 60 338 5.44e-12 67.4
Msa1187900 MtrunA17_Chr2g0299431 40.000 85 47 2 318 401 53 134 2.40e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1187900 AT5G04970.1 50.161 311 144 6 95 400 87 391 3.27e-96 301
Msa1187900 AT3G10720.2 51.118 313 138 7 95 400 82 386 5.65e-96 300
Msa1187900 AT4G02330.1 36.646 322 185 7 91 401 30 343 4.94e-57 196
Msa1187900 AT1G02810.1 37.353 340 177 10 85 400 21 348 6.21e-53 186
Msa1187900 AT2G47550.1 36.254 331 191 8 74 400 15 329 2.97e-44 162
Msa1187900 AT2G26440.1 32.749 342 184 14 72 404 18 322 7.64e-28 115
Msa1187900 AT1G53840.1 30.655 336 186 12 77 400 61 361 4.55e-25 107
Msa1187900 AT5G04960.1 30.931 333 174 15 78 400 52 338 3.51e-23 102
Msa1187900 AT4G33220.1 34.000 250 139 7 161 404 68 297 5.00e-23 101
Msa1187900 AT5G27870.1 26.582 316 192 8 90 399 51 332 1.22e-22 100
Msa1187900 AT3G43270.1 33.865 251 128 10 161 404 80 299 5.49e-22 98.6
Msa1187900 AT2G26450.1 26.816 358 198 14 64 400 68 382 8.03e-22 98.2
Msa1187900 AT1G11580.2 30.165 242 131 5 160 399 142 347 1.19e-21 97.4
Msa1187900 AT3G14300.1 28.963 328 189 12 82 401 451 742 1.21e-21 98.2
Msa1187900 AT3G60730.1 31.532 222 126 5 192 404 89 293 1.36e-21 97.1
Msa1187900 AT1G11580.1 30.165 242 131 5 160 399 121 326 2.15e-21 96.7
Msa1187900 AT1G23200.1 30.030 333 178 10 95 404 37 337 2.74e-21 96.3
Msa1187900 AT4G33220.2 47.748 111 50 3 295 404 73 176 1.19e-20 93.6
Msa1187900 AT3G05610.1 24.765 319 195 7 96 406 62 343 1.46e-20 94.4
Msa1187900 AT4G02320.1 28.819 288 151 9 126 401 44 289 2.71e-20 93.2
Msa1187900 AT3G05620.1 27.245 323 189 10 93 404 38 325 1.25e-19 91.3
Msa1187900 AT5G53370.2 28.571 329 182 14 89 404 107 395 2.96e-19 90.5
Msa1187900 AT5G53370.1 28.571 329 182 14 89 404 71 359 3.33e-19 90.1
Msa1187900 AT4G02300.1 30.859 256 133 7 153 401 85 303 4.46e-19 89.7
Msa1187900 AT1G53830.1 29.773 309 194 9 96 399 66 356 3.66e-18 87.0
Msa1187900 AT4G33230.1 30.097 309 182 12 96 400 99 377 5.14e-18 86.7
Msa1187900 AT3G10710.1 26.959 319 181 12 87 400 65 336 1.23e-17 85.5
Msa1187900 AT3G49220.2 28.399 331 172 14 93 406 133 415 1.36e-17 84.7
Msa1187900 AT2G45220.1 52.326 86 34 2 314 399 204 282 1.74e-16 81.6
Msa1187900 AT1G11370.1 44.944 89 42 2 314 400 43 126 2.87e-16 79.3
Msa1187900 AT3G49220.3 27.660 329 175 13 93 404 133 415 7.31e-16 80.1
Msa1187900 AT3G49220.1 27.616 344 184 14 78 404 75 370 8.36e-16 79.7
Msa1187900 AT5G51490.1 24.204 314 194 9 91 401 33 305 3.92e-15 77.8
Msa1187900 AT3G47400.1 28.642 405 230 14 14 405 11 369 5.10e-15 77.4
Msa1187900 AT4G00190.1 45.238 84 45 1 317 400 165 247 1.09e-14 75.9
Msa1187900 AT5G51500.1 37.500 104 60 2 298 401 211 309 1.30e-14 75.9
Msa1187900 AT3G06830.1 27.425 299 192 7 88 384 47 322 1.97e-14 75.5
Msa1187900 AT2G43050.1 29.915 234 117 6 174 399 100 294 4.32e-14 74.3
Msa1187900 AT3G14310.1 26.300 327 212 9 85 399 52 361 1.51e-13 72.8
Msa1187900 AT5G09760.2 42.222 90 49 2 313 401 263 350 1.32e-12 69.7
Msa1187900 AT5G09760.1 42.222 90 49 2 313 401 237 324 1.63e-12 69.7
Msa1187900 AT4G03930.1 44.048 84 44 1 317 400 216 296 3.70e-12 68.6
Msa1187900 AT3G27980.1 42.169 83 45 1 317 399 189 268 1.55e-11 66.2
Msa1187900 AT5G64640.1 41.304 92 49 3 313 401 285 374 2.69e-11 65.9
Msa1187900 AT1G11590.1 42.169 83 45 1 317 399 216 295 5.82e-11 64.7

Find 80 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGAATATCTTGCTTAT+TGG 0.206210 8_1:-27869354 Msa1187900:CDS
ACAGAAAACTTCACTTCTAT+TGG 0.227904 8_1:-27869483 Msa1187900:CDS
CCTACGGACCCCTACCATTT+AGG 0.257921 8_1:-27871278 Msa1187900:CDS
CAGAAAACTTCACTTCTATT+GGG 0.284733 8_1:-27869482 Msa1187900:CDS
GAAGAAGAAGTAGGAGTAGA+AGG 0.331064 8_1:+27871368 None:intergenic
AGAATGGAACGACATAGTTT+TGG 0.342470 8_1:+27871320 None:intergenic
TATGTTATTGTGAGTCTTGA+TGG 0.346098 8_1:-27869507 Msa1187900:CDS
TAATGTTGATTTGCATGCTT+TGG 0.371872 8_1:+27871346 None:intergenic
GGAGGAGGAGGAGAAGGAAT+AGG 0.378675 8_1:+27871401 None:intergenic
AAGAGGTTTGTGCTTGGAGG+AGG 0.392989 8_1:+27871558 None:intergenic
GAAGAAGAATGAGAAGTAGA+AGG 0.400896 8_1:+27871443 None:intergenic
GGAGAAGGAGAAGGAGGAGG+AGG 0.407429 8_1:+27871389 None:intergenic
GGAGAAGGAGGAGGAGGAGA+AGG 0.410663 8_1:+27871395 None:intergenic
TCTTCTGCCTTCAAATTATG+AGG 0.411265 8_1:+27869441 None:intergenic
AAGGAGAAGAGGTTTGTGCT+TGG 0.413783 8_1:+27871552 None:intergenic
GAGAAAGTCTTTGAATACTT+TGG 0.418166 8_1:+27871211 None:intergenic
TGAGGAAGAGGGAGAGAGGA+AGG 0.430437 8_1:+27871591 None:intergenic
TTTCTTATCTATGTCAAAGA+AGG 0.432591 8_1:-27869411 Msa1187900:CDS
CACCGATGTGTTGGTGGAAA+AGG 0.434972 8_1:-27871045 Msa1187900:CDS
GAGAAGAGGTTTGTGCTTGG+AGG 0.438118 8_1:+27871555 None:intergenic
AGCTGCACCTCATAATTTGA+AGG 0.439765 8_1:-27869448 Msa1187900:CDS
ATCGTCTAGTGCCGCAATCT+CGG 0.451993 8_1:+27871154 None:intergenic
CTGACCTTGTAAGCCTTAGT+AGG 0.460092 8_1:+27870825 None:intergenic
GAAGGAGAAGGAGAAGGAGG+AGG 0.462044 8_1:+27871386 None:intergenic
GGAAGGGTAAAATGAGGAAG+AGG 0.475290 8_1:+27871579 None:intergenic
ATATAGTATTTCACTTGGGT+TGG 0.476341 8_1:-27870904 Msa1187900:CDS
CAATTATATAGTATTTCACT+TGG 0.478234 8_1:-27870909 Msa1187900:CDS
CAAACAAGGTCTTCCTACTA+AGG 0.479222 8_1:-27870838 Msa1187900:CDS
GGTTTGTGCTTGGAGGAGGA+AGG 0.486473 8_1:+27871562 None:intergenic
GGAAATCATAGTGTGGTAGA+TGG 0.488932 8_1:-27869303 Msa1187900:CDS
AAAATGAGGAAGAGGGAGAG+AGG 0.489550 8_1:+27871587 None:intergenic
GAAGTAGAAGGAGAAGGAAA+AGG 0.494784 8_1:+27871455 None:intergenic
AGGAGAAGGAGAAGGAGAAG+AGG 0.495884 8_1:+27871541 None:intergenic
CATAATTTGAAGGCAGAAGA+TGG 0.495912 8_1:-27869438 Msa1187900:CDS
CATGCTTTGGAAGAAGAAGT+AGG 0.496496 8_1:+27871359 None:intergenic
GAAGAAGAAGGAGAAGGAGA+AGG 0.506447 8_1:+27871533 None:intergenic
GTAGAAGGAGAAGGAGAAGG+AGG 0.506935 8_1:+27871383 None:intergenic
ATCATAGTGTGGTAGATGGT+TGG 0.507535 8_1:-27869299 Msa1187900:CDS
GGAGGAGAAGGAATAGGAGA+AGG 0.508854 8_1:+27871407 None:intergenic
GAAGGAGAAGGAGAAGAAGA+AGG 0.511362 8_1:+27871521 None:intergenic
AATATCTTGCTTATTGGTGA+TGG 0.511844 8_1:-27869348 Msa1187900:CDS
CGTAGGAGAGGAACGGATTG+AGG 0.513414 8_1:+27871295 None:intergenic
GAGAGGAAGGAGAAGAATGA+AGG 0.514984 8_1:+27871604 None:intergenic
CTCAATCCGTTCCTCTCCTA+CGG 0.515534 8_1:-27871294 Msa1187900:CDS
GGAACGGATTGAGGAGAGAA+TGG 0.517254 8_1:+27871304 None:intergenic
ATAGGAGAAGGAGACGGAGT+AGG 0.517384 8_1:+27871419 None:intergenic
GAAGGAGAAGAAGAAGGAGA+AGG 0.521021 8_1:+27871527 None:intergenic
GAAGAAGAATGAGAAGGAGA+AGG 0.521603 8_1:+27871509 None:intergenic
CTAAGTAATCTACATTGAGC+TGG 0.522297 8_1:+27871117 None:intergenic
CTCGGCATGGTTAAGAGAAG+TGG 0.523798 8_1:+27871172 None:intergenic
CTTAAAGAAAGCGAAAATAG+AGG 0.524153 8_1:-27869546 Msa1187900:CDS
GTTTGTGCTTGGAGGAGGAA+GGG 0.526979 8_1:+27871563 None:intergenic
GGAGTAGAAGGAGAAGGAGA+AGG 0.527720 8_1:+27871380 None:intergenic
GAAGTAGGAGTAGAAGGAGA+AGG 0.530923 8_1:+27871374 None:intergenic
TCTTCCTACTAAGGCTTACA+AGG 0.530926 8_1:-27870829 Msa1187900:CDS
ATTAACAAGACTTGCATCAC+AGG 0.533192 8_1:-27869324 Msa1187900:CDS
GAATGAGAAGTAGAAGGAGA+AGG 0.547420 8_1:+27871449 None:intergenic
GAAGGAGAAGAAGAATGAGA+AGG 0.552931 8_1:+27871503 None:intergenic
TAACAACACCGATGTGTTGG+TGG 0.552935 8_1:-27871051 Msa1187900:CDS
CAGCTGATTTAAGTTCATCT+CGG 0.554463 8_1:+27871087 None:intergenic
AAGAATGAAGGAAGTTGATG+AGG 0.559639 8_1:+27871616 None:intergenic
CCTTTCGTGTCTAACACAGT+TGG 0.562336 8_1:+27869572 None:intergenic
GAATGAGAATGAGAAGGAGA+AGG 0.563183 8_1:+27871485 None:intergenic
GAAGAAGAATGAGAATGAGA+AGG 0.564258 8_1:+27871479 None:intergenic
AATTGTGTAACATTACTCAA+TGG 0.567088 8_1:+27870927 None:intergenic
AAAGGTTGAAGAATTAAAAG+TGG 0.571478 8_1:+27869275 None:intergenic
TCTTAACCATGCCGAGATTG+CGG 0.571735 8_1:-27871165 Msa1187900:CDS
GAAGGGTAAAATGAGGAAGA+GGG 0.576074 8_1:+27871580 None:intergenic
AAGCGGAAGACTCGCAAACA+AGG 0.581727 8_1:-27870852 Msa1187900:CDS
CCTAAATGGTAGGGGTCCGT+AGG 0.584336 8_1:+27871278 None:intergenic
GGAGGAGGAAGGGTAAAATG+AGG 0.585231 8_1:+27871573 None:intergenic
AGAAAACTTCACTTCTATTG+GGG 0.587182 8_1:-27869481 Msa1187900:CDS
GAAGGAATAGGAGAAGGAGA+CGG 0.592675 8_1:+27871413 None:intergenic
ATGGTAGGGGTCCGTAGGAG+AGG 0.593761 8_1:+27871283 None:intergenic
TGAAACTTATCTTAGTGCTG+TGG 0.613599 8_1:-27871021 Msa1187900:CDS
AATTATATAGTATTTCACTT+GGG 0.614742 8_1:-27870908 Msa1187900:CDS
CCAACTGTGTTAGACACGAA+AGG 0.647326 8_1:-27869572 Msa1187900:CDS
AGGGGTCCGTAGGAGAGGAA+CGG 0.660082 8_1:+27871288 None:intergenic
CATGGTTAAGAGAAGTGGAG+TGG 0.677604 8_1:+27871177 None:intergenic
CATCACAGGAAATCATAGTG+TGG 0.687415 8_1:-27869310 Msa1187900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAAAAAATAATAATA+AGG + chr8_1:27870124-27870143 None:intergenic 0.0%
!! TTAATAAAAAAATAATAATA+AGG + chr8_1:27870124-27870143 None:intergenic 0.0%
!! AATTATATAGTATTTCACTT+GGG - chr8_1:27869960-27869979 Msa1187900:intron 15.0%
!! TCAAAAATAAATATCATGTT+TGG + chr8_1:27870161-27870180 None:intergenic 15.0%
!! AAATATATGTAATGACTTTA+TGG - chr8_1:27870427-27870446 Msa1187900:intron 15.0%
!!! TTTTAATCCTTACATTTTTT+TGG + chr8_1:27870546-27870565 None:intergenic 15.0%
!! AAAAAATGTAAGGATTAAAA+TGG - chr8_1:27870546-27870565 Msa1187900:intron 15.0%
!!! CTAAAAAAAGTCTTTTTATT+TGG + chr8_1:27870719-27870738 None:intergenic 15.0%
!! ACATAAATTAAATGCATTTA+AGG + chr8_1:27871118-27871137 None:intergenic 15.0%
!! AATTATATAGTATTTCACTT+GGG - chr8_1:27869960-27869979 Msa1187900:intron 15.0%
!! TCAAAAATAAATATCATGTT+TGG + chr8_1:27870161-27870180 None:intergenic 15.0%
!! AAATATATGTAATGACTTTA+TGG - chr8_1:27870427-27870446 Msa1187900:intron 15.0%
!!! TTTTAATCCTTACATTTTTT+TGG + chr8_1:27870546-27870565 None:intergenic 15.0%
!! AAAAAATGTAAGGATTAAAA+TGG - chr8_1:27870546-27870565 Msa1187900:intron 15.0%
!!! CTAAAAAAAGTCTTTTTATT+TGG + chr8_1:27870719-27870738 None:intergenic 15.0%
!! ACATAAATTAAATGCATTTA+AGG + chr8_1:27871118-27871137 None:intergenic 15.0%
!!! TTATTGAGAATTTTCCTAAA+TGG + chr8_1:27869607-27869626 None:intergenic 20.0%
!!! AATCATTATACTTGTTTTGA+TGG - chr8_1:27869875-27869894 Msa1187900:intron 20.0%
!!! ATCATTATACTTGTTTTGAT+GGG - chr8_1:27869876-27869895 Msa1187900:intron 20.0%
!! CAATTATATAGTATTTCACT+TGG - chr8_1:27869959-27869978 Msa1187900:intron 20.0%
!! TGAGTAAAAATATTAAGAAG+CGG - chr8_1:27869999-27870018 Msa1187900:intron 20.0%
!!! TTAATTTAGTTCACATTTTG+AGG - chr8_1:27870399-27870418 Msa1187900:intron 20.0%
!!! TAATTTAGTTCACATTTTGA+GGG - chr8_1:27870400-27870419 Msa1187900:intron 20.0%
!! TAGTTAACCAAAAAAATGTA+AGG - chr8_1:27870536-27870555 Msa1187900:intron 20.0%
!! AATAAGTGTTAAAATGTCTT+CGG + chr8_1:27870618-27870637 None:intergenic 20.0%
!! AAAACTCGTATAAAATATCA+TGG - chr8_1:27870685-27870704 Msa1187900:intron 20.0%
!! ATAACGTAAAATATGTTAAC+TGG - chr8_1:27870842-27870861 Msa1187900:CDS 20.0%
!! ATTTAACAGTAACATTATGA+AGG - chr8_1:27871184-27871203 Msa1187900:CDS 20.0%
!!! TTATTGAGAATTTTCCTAAA+TGG + chr8_1:27869607-27869626 None:intergenic 20.0%
!!! AATCATTATACTTGTTTTGA+TGG - chr8_1:27869875-27869894 Msa1187900:intron 20.0%
!!! ATCATTATACTTGTTTTGAT+GGG - chr8_1:27869876-27869895 Msa1187900:intron 20.0%
!! CAATTATATAGTATTTCACT+TGG - chr8_1:27869959-27869978 Msa1187900:intron 20.0%
!! TGAGTAAAAATATTAAGAAG+CGG - chr8_1:27869999-27870018 Msa1187900:intron 20.0%
!!! TTAATTTAGTTCACATTTTG+AGG - chr8_1:27870399-27870418 Msa1187900:intron 20.0%
!!! TAATTTAGTTCACATTTTGA+GGG - chr8_1:27870400-27870419 Msa1187900:intron 20.0%
!! TAGTTAACCAAAAAAATGTA+AGG - chr8_1:27870536-27870555 Msa1187900:intron 20.0%
!! AATAAGTGTTAAAATGTCTT+CGG + chr8_1:27870618-27870637 None:intergenic 20.0%
!! AAAACTCGTATAAAATATCA+TGG - chr8_1:27870685-27870704 Msa1187900:intron 20.0%
!! ATAACGTAAAATATGTTAAC+TGG - chr8_1:27870842-27870861 Msa1187900:CDS 20.0%
!! ATTTAACAGTAACATTATGA+AGG - chr8_1:27871184-27871203 Msa1187900:CDS 20.0%
!!! GAATACTTTGGATAGTTTTT+TGG + chr8_1:27869648-27869667 None:intergenic 25.0%
! AATTGTGTAACATTACTCAA+TGG + chr8_1:27869944-27869963 None:intergenic 25.0%
!!! ACCTTAATAAGCTTTTTAAG+TGG + chr8_1:27870073-27870092 None:intergenic 25.0%
!! CTTGGGTTATTGATTAAAAA+TGG + chr8_1:27870208-27870227 None:intergenic 25.0%
!! TTTTATAAAGCAATGCTCTT+GGG + chr8_1:27870225-27870244 None:intergenic 25.0%
!! ATTTTATAAAGCAATGCTCT+TGG + chr8_1:27870226-27870245 None:intergenic 25.0%
! AGCATTGCTTTATAAAATGT+GGG - chr8_1:27870228-27870247 Msa1187900:intron 25.0%
! CATTTGTCACATTGTAAATA+AGG + chr8_1:27870316-27870335 None:intergenic 25.0%
!!! CAAAATTTTGAGTAACACAA+GGG + chr8_1:27870357-27870376 None:intergenic 25.0%
!!! CTAAACATTTAATTTGCGTA+TGG + chr8_1:27870792-27870811 None:intergenic 25.0%
!!! AAGAAGAAGTTGATATAACT+GGG + chr8_1:27871033-27871052 None:intergenic 25.0%
!!! TAAGAAGAAGTTGATATAAC+TGG + chr8_1:27871034-27871053 None:intergenic 25.0%
! ATTATATACAAGATGACAAG+TGG + chr8_1:27871061-27871080 None:intergenic 25.0%
! TTTCTTATCTATGTCAAAGA+AGG - chr8_1:27871457-27871476 Msa1187900:CDS 25.0%
! AAGAAGAATATCTTGCTTAT+TGG - chr8_1:27871514-27871533 Msa1187900:CDS 25.0%
! AAAGGTTGAAGAATTAAAAG+TGG + chr8_1:27871596-27871615 None:intergenic 25.0%
!!! ACTTTTAATTCTTCAACCTT+TGG - chr8_1:27871595-27871614 Msa1187900:CDS 25.0%
!! GAAAAAATTTGACTTACCAA+AGG + chr8_1:27871614-27871633 None:intergenic 25.0%
!!! GAATACTTTGGATAGTTTTT+TGG + chr8_1:27869648-27869667 None:intergenic 25.0%
! AATTGTGTAACATTACTCAA+TGG + chr8_1:27869944-27869963 None:intergenic 25.0%
!!! ACCTTAATAAGCTTTTTAAG+TGG + chr8_1:27870073-27870092 None:intergenic 25.0%
!! CTTGGGTTATTGATTAAAAA+TGG + chr8_1:27870208-27870227 None:intergenic 25.0%
!! TTTTATAAAGCAATGCTCTT+GGG + chr8_1:27870225-27870244 None:intergenic 25.0%
!! ATTTTATAAAGCAATGCTCT+TGG + chr8_1:27870226-27870245 None:intergenic 25.0%
! AGCATTGCTTTATAAAATGT+GGG - chr8_1:27870228-27870247 Msa1187900:intron 25.0%
! CATTTGTCACATTGTAAATA+AGG + chr8_1:27870316-27870335 None:intergenic 25.0%
!!! CAAAATTTTGAGTAACACAA+GGG + chr8_1:27870357-27870376 None:intergenic 25.0%
!!! CTAAACATTTAATTTGCGTA+TGG + chr8_1:27870792-27870811 None:intergenic 25.0%
!!! AAGAAGAAGTTGATATAACT+GGG + chr8_1:27871033-27871052 None:intergenic 25.0%
!!! TAAGAAGAAGTTGATATAAC+TGG + chr8_1:27871034-27871053 None:intergenic 25.0%
! ATTATATACAAGATGACAAG+TGG + chr8_1:27871061-27871080 None:intergenic 25.0%
! TTTCTTATCTATGTCAAAGA+AGG - chr8_1:27871457-27871476 Msa1187900:CDS 25.0%
! AAGAAGAATATCTTGCTTAT+TGG - chr8_1:27871514-27871533 Msa1187900:CDS 25.0%
! AAAGGTTGAAGAATTAAAAG+TGG + chr8_1:27871596-27871615 None:intergenic 25.0%
!!! ACTTTTAATTCTTCAACCTT+TGG - chr8_1:27871595-27871614 Msa1187900:CDS 25.0%
!! GAAAAAATTTGACTTACCAA+AGG + chr8_1:27871614-27871633 None:intergenic 25.0%
!! TAATGTTGATTTGCATGCTT+TGG + chr8_1:27869525-27869544 None:intergenic 30.0%
! AGAATTTTCCTAAATGGTAG+GGG + chr8_1:27869601-27869620 None:intergenic 30.0%
! GAGAATTTTCCTAAATGGTA+GGG + chr8_1:27869602-27869621 None:intergenic 30.0%
! TGAGAATTTTCCTAAATGGT+AGG + chr8_1:27869603-27869622 None:intergenic 30.0%
!!! ATAGTTTTTTGGCTTGTTTC+AGG + chr8_1:27869637-27869656 None:intergenic 30.0%
GAGAAAGTCTTTGAATACTT+TGG + chr8_1:27869660-27869679 None:intergenic 30.0%
!!! TTATACTTGTTTTGATGGGT+TGG - chr8_1:27869880-27869899 Msa1187900:intron 30.0%
ATATAGTATTTCACTTGGGT+TGG - chr8_1:27869964-27869983 Msa1187900:intron 30.0%
! ATTTTTACTCAAAGCTTGAG+TGG + chr8_1:27869990-27870009 None:intergenic 30.0%
GCCACTTAAAAAGCTTATTA+AGG - chr8_1:27870069-27870088 Msa1187900:intron 30.0%
! GAGCATTGCTTTATAAAATG+TGG - chr8_1:27870227-27870246 Msa1187900:intron 30.0%
GCATTGCTTTATAAAATGTG+GGG - chr8_1:27870229-27870248 Msa1187900:intron 30.0%
!! CCAAAATTTTGAGTAACACA+AGG + chr8_1:27870358-27870377 None:intergenic 30.0%
!! CCTTGTGTTACTCAAAATTT+TGG - chr8_1:27870355-27870374 Msa1187900:intron 30.0%
ATTAATAGTCCCATGATGTA+AGG + chr8_1:27870384-27870403 None:intergenic 30.0%
TAATGACTTTATGGCTAAGA+AGG - chr8_1:27870436-27870455 Msa1187900:intron 30.0%
AGAGACTAAACTTGAAAGAT+TGG - chr8_1:27870586-27870605 Msa1187900:intron 30.0%
ACTAAACTTGAAAGATTGGT+AGG - chr8_1:27870590-27870609 Msa1187900:intron 30.0%
! AGAGATTAGTCACTGTTAAA+CGG - chr8_1:27870656-27870675 Msa1187900:intron 30.0%
AGAGCTAGAAGTTTAATTAG+TGG - chr8_1:27870814-27870833 Msa1187900:CDS 30.0%
GAGCTAGAAGTTTAATTAGT+GGG - chr8_1:27870815-27870834 Msa1187900:CDS 30.0%
TCAGAATTTAGCTAAAACCT+AGG + chr8_1:27870900-27870919 None:intergenic 30.0%
TTTGTTTGTTTGTGCCATAA+TGG - chr8_1:27870973-27870992 Msa1187900:CDS 30.0%
!! AGAAGAAGTTGATATAACTG+GGG + chr8_1:27871032-27871051 None:intergenic 30.0%
CTTAAAGAAAGCGAAAATAG+AGG - chr8_1:27871322-27871341 Msa1187900:CDS 30.0%
TATGTTATTGTGAGTCTTGA+TGG - chr8_1:27871361-27871380 Msa1187900:CDS 30.0%
ACAGAAAACTTCACTTCTAT+TGG - chr8_1:27871385-27871404 Msa1187900:CDS 30.0%
CAGAAAACTTCACTTCTATT+GGG - chr8_1:27871386-27871405 Msa1187900:CDS 30.0%
AGAAAACTTCACTTCTATTG+GGG - chr8_1:27871387-27871406 Msa1187900:CDS 30.0%
AATATCTTGCTTATTGGTGA+TGG - chr8_1:27871520-27871539 Msa1187900:CDS 30.0%
!! TAATGTTGATTTGCATGCTT+TGG + chr8_1:27869525-27869544 None:intergenic 30.0%
! AGAATTTTCCTAAATGGTAG+GGG + chr8_1:27869601-27869620 None:intergenic 30.0%
! GAGAATTTTCCTAAATGGTA+GGG + chr8_1:27869602-27869621 None:intergenic 30.0%
! TGAGAATTTTCCTAAATGGT+AGG + chr8_1:27869603-27869622 None:intergenic 30.0%
!!! ATAGTTTTTTGGCTTGTTTC+AGG + chr8_1:27869637-27869656 None:intergenic 30.0%
GAGAAAGTCTTTGAATACTT+TGG + chr8_1:27869660-27869679 None:intergenic 30.0%
!!! TTATACTTGTTTTGATGGGT+TGG - chr8_1:27869880-27869899 Msa1187900:intron 30.0%
ATATAGTATTTCACTTGGGT+TGG - chr8_1:27869964-27869983 Msa1187900:intron 30.0%
! ATTTTTACTCAAAGCTTGAG+TGG + chr8_1:27869990-27870009 None:intergenic 30.0%
GCCACTTAAAAAGCTTATTA+AGG - chr8_1:27870069-27870088 Msa1187900:intron 30.0%
! GAGCATTGCTTTATAAAATG+TGG - chr8_1:27870227-27870246 Msa1187900:intron 30.0%
GCATTGCTTTATAAAATGTG+GGG - chr8_1:27870229-27870248 Msa1187900:intron 30.0%
!! CCAAAATTTTGAGTAACACA+AGG + chr8_1:27870358-27870377 None:intergenic 30.0%
!! CCTTGTGTTACTCAAAATTT+TGG - chr8_1:27870355-27870374 Msa1187900:intron 30.0%
ATTAATAGTCCCATGATGTA+AGG + chr8_1:27870384-27870403 None:intergenic 30.0%
TAATGACTTTATGGCTAAGA+AGG - chr8_1:27870436-27870455 Msa1187900:intron 30.0%
AGAGACTAAACTTGAAAGAT+TGG - chr8_1:27870586-27870605 Msa1187900:intron 30.0%
ACTAAACTTGAAAGATTGGT+AGG - chr8_1:27870590-27870609 Msa1187900:intron 30.0%
! AGAGATTAGTCACTGTTAAA+CGG - chr8_1:27870656-27870675 Msa1187900:intron 30.0%
AGAGCTAGAAGTTTAATTAG+TGG - chr8_1:27870814-27870833 Msa1187900:CDS 30.0%
GAGCTAGAAGTTTAATTAGT+GGG - chr8_1:27870815-27870834 Msa1187900:CDS 30.0%
TCAGAATTTAGCTAAAACCT+AGG + chr8_1:27870900-27870919 None:intergenic 30.0%
TTTGTTTGTTTGTGCCATAA+TGG - chr8_1:27870973-27870992 Msa1187900:CDS 30.0%
!! AGAAGAAGTTGATATAACTG+GGG + chr8_1:27871032-27871051 None:intergenic 30.0%
CTTAAAGAAAGCGAAAATAG+AGG - chr8_1:27871322-27871341 Msa1187900:CDS 30.0%
TATGTTATTGTGAGTCTTGA+TGG - chr8_1:27871361-27871380 Msa1187900:CDS 30.0%
ACAGAAAACTTCACTTCTAT+TGG - chr8_1:27871385-27871404 Msa1187900:CDS 30.0%
CAGAAAACTTCACTTCTATT+GGG - chr8_1:27871386-27871405 Msa1187900:CDS 30.0%
AGAAAACTTCACTTCTATTG+GGG - chr8_1:27871387-27871406 Msa1187900:CDS 30.0%
AATATCTTGCTTATTGGTGA+TGG - chr8_1:27871520-27871539 Msa1187900:CDS 30.0%
!! AAGAATGAAGGAAGTTGATG+AGG + chr8_1:27869255-27869274 None:intergenic 35.0%
GAAGAAGAATGAGAATGAGA+AGG + chr8_1:27869392-27869411 None:intergenic 35.0%
GAAGAAGAATGAGAAGTAGA+AGG + chr8_1:27869428-27869447 None:intergenic 35.0%
! AGAATGGAACGACATAGTTT+TGG + chr8_1:27869551-27869570 None:intergenic 35.0%
CTAAGTAATCTACATTGAGC+TGG + chr8_1:27869754-27869773 None:intergenic 35.0%
! CAGCTGATTTAAGTTCATCT+CGG + chr8_1:27869784-27869803 None:intergenic 35.0%
! TTTTAACAACACCGATGTGT+TGG - chr8_1:27869814-27869833 Msa1187900:intron 35.0%
TGAAACTTATCTTAGTGCTG+TGG - chr8_1:27869847-27869866 Msa1187900:intron 35.0%
TGTGGGGATTAAAATGATCT+TGG - chr8_1:27870245-27870264 Msa1187900:intron 35.0%
!! ATTTTGGAAGCCTTACATCA+TGG - chr8_1:27870371-27870390 Msa1187900:intron 35.0%
!! TTTTGGAAGCCTTACATCAT+GGG - chr8_1:27870372-27870391 Msa1187900:intron 35.0%
TTAAAGTCTCTCCTTCTAAG+AGG - chr8_1:27870500-27870519 Msa1187900:intron 35.0%
TAACAAGTTTGCCTCTTAGA+AGG + chr8_1:27870514-27870533 None:intergenic 35.0%
!! TCCAAGGATTGGTTAAATTC+TGG - chr8_1:27870870-27870889 Msa1187900:CDS 35.0%
ACCAGAATTTAACCAATCCT+TGG + chr8_1:27870874-27870893 None:intergenic 35.0%
AAACTTTATGATCAGTCACG+TGG - chr8_1:27870931-27870950 Msa1187900:CDS 35.0%
TCTTCTGCCTTCAAATTATG+AGG + chr8_1:27871430-27871449 None:intergenic 35.0%
CATAATTTGAAGGCAGAAGA+TGG - chr8_1:27871430-27871449 Msa1187900:CDS 35.0%
ATTAACAAGACTTGCATCAC+AGG - chr8_1:27871544-27871563 Msa1187900:CDS 35.0%
!! AAGAATGAAGGAAGTTGATG+AGG + chr8_1:27869255-27869274 None:intergenic 35.0%
GAAGAAGAATGAGAATGAGA+AGG + chr8_1:27869392-27869411 None:intergenic 35.0%
GAAGAAGAATGAGAAGTAGA+AGG + chr8_1:27869428-27869447 None:intergenic 35.0%
! AGAATGGAACGACATAGTTT+TGG + chr8_1:27869551-27869570 None:intergenic 35.0%
CTAAGTAATCTACATTGAGC+TGG + chr8_1:27869754-27869773 None:intergenic 35.0%
! CAGCTGATTTAAGTTCATCT+CGG + chr8_1:27869784-27869803 None:intergenic 35.0%
! TTTTAACAACACCGATGTGT+TGG - chr8_1:27869814-27869833 Msa1187900:intron 35.0%
TGAAACTTATCTTAGTGCTG+TGG - chr8_1:27869847-27869866 Msa1187900:intron 35.0%
TGTGGGGATTAAAATGATCT+TGG - chr8_1:27870245-27870264 Msa1187900:intron 35.0%
!! ATTTTGGAAGCCTTACATCA+TGG - chr8_1:27870371-27870390 Msa1187900:intron 35.0%
!! TTTTGGAAGCCTTACATCAT+GGG - chr8_1:27870372-27870391 Msa1187900:intron 35.0%
TTAAAGTCTCTCCTTCTAAG+AGG - chr8_1:27870500-27870519 Msa1187900:intron 35.0%
TAACAAGTTTGCCTCTTAGA+AGG + chr8_1:27870514-27870533 None:intergenic 35.0%
!! TCCAAGGATTGGTTAAATTC+TGG - chr8_1:27870870-27870889 Msa1187900:CDS 35.0%
ACCAGAATTTAACCAATCCT+TGG + chr8_1:27870874-27870893 None:intergenic 35.0%
AAACTTTATGATCAGTCACG+TGG - chr8_1:27870931-27870950 Msa1187900:CDS 35.0%
TCTTCTGCCTTCAAATTATG+AGG + chr8_1:27871430-27871449 None:intergenic 35.0%
CATAATTTGAAGGCAGAAGA+TGG - chr8_1:27871430-27871449 Msa1187900:CDS 35.0%
ATTAACAAGACTTGCATCAC+AGG - chr8_1:27871544-27871563 Msa1187900:CDS 35.0%
GAAGGGTAAAATGAGGAAGA+GGG + chr8_1:27869291-27869310 None:intergenic 40.0%
GAAGAAGAATGAGAAGGAGA+AGG + chr8_1:27869362-27869381 None:intergenic 40.0%
GAAGGAGAAGAAGAATGAGA+AGG + chr8_1:27869368-27869387 None:intergenic 40.0%
GAATGAGAATGAGAAGGAGA+AGG + chr8_1:27869386-27869405 None:intergenic 40.0%
GAAGTAGAAGGAGAAGGAAA+AGG + chr8_1:27869416-27869435 None:intergenic 40.0%
GAATGAGAAGTAGAAGGAGA+AGG + chr8_1:27869422-27869441 None:intergenic 40.0%
GAAGAAGAAGTAGGAGTAGA+AGG + chr8_1:27869503-27869522 None:intergenic 40.0%
!! CATGCTTTGGAAGAAGAAGT+AGG + chr8_1:27869512-27869531 None:intergenic 40.0%
! AACCTTTTCCACCAACACAT+CGG + chr8_1:27869828-27869847 None:intergenic 40.0%
CAAACAAGGTCTTCCTACTA+AGG - chr8_1:27870030-27870049 Msa1187900:intron 40.0%
TCTTCCTACTAAGGCTTACA+AGG - chr8_1:27870039-27870058 Msa1187900:intron 40.0%
!! AATTTGCGTATGGCTCTAAG+TGG + chr8_1:27870782-27870801 None:intergenic 40.0%
ATGTTAACTGGCTAGATCCA+AGG - chr8_1:27870854-27870873 Msa1187900:CDS 40.0%
GGTTAAATTCTGGTCAACCT+AGG - chr8_1:27870880-27870899 Msa1187900:CDS 40.0%
TGCACGTGTTCTTTCCATTA+TGG + chr8_1:27870990-27871009 None:intergenic 40.0%
!! AAGTTGATATAACTGGGGTG+GGG + chr8_1:27871027-27871046 None:intergenic 40.0%
!! GAAGTTGATATAACTGGGGT+GGG + chr8_1:27871028-27871047 None:intergenic 40.0%
!! AGAAGTTGATATAACTGGGG+TGG + chr8_1:27871029-27871048 None:intergenic 40.0%
AGCTGCACCTCATAATTTGA+AGG - chr8_1:27871420-27871439 Msa1187900:CDS 40.0%
CATCACAGGAAATCATAGTG+TGG - chr8_1:27871558-27871577 Msa1187900:CDS 40.0%
GGAAATCATAGTGTGGTAGA+TGG - chr8_1:27871565-27871584 Msa1187900:CDS 40.0%
ATCATAGTGTGGTAGATGGT+TGG - chr8_1:27871569-27871588 Msa1187900:CDS 40.0%
GAAGGGTAAAATGAGGAAGA+GGG + chr8_1:27869291-27869310 None:intergenic 40.0%
GAAGAAGAATGAGAAGGAGA+AGG + chr8_1:27869362-27869381 None:intergenic 40.0%
GAAGGAGAAGAAGAATGAGA+AGG + chr8_1:27869368-27869387 None:intergenic 40.0%
GAATGAGAATGAGAAGGAGA+AGG + chr8_1:27869386-27869405 None:intergenic 40.0%
GAAGTAGAAGGAGAAGGAAA+AGG + chr8_1:27869416-27869435 None:intergenic 40.0%
GAATGAGAAGTAGAAGGAGA+AGG + chr8_1:27869422-27869441 None:intergenic 40.0%
GAAGAAGAAGTAGGAGTAGA+AGG + chr8_1:27869503-27869522 None:intergenic 40.0%
!! CATGCTTTGGAAGAAGAAGT+AGG + chr8_1:27869512-27869531 None:intergenic 40.0%
! AACCTTTTCCACCAACACAT+CGG + chr8_1:27869828-27869847 None:intergenic 40.0%
CAAACAAGGTCTTCCTACTA+AGG - chr8_1:27870030-27870049 Msa1187900:intron 40.0%
TCTTCCTACTAAGGCTTACA+AGG - chr8_1:27870039-27870058 Msa1187900:intron 40.0%
!! AATTTGCGTATGGCTCTAAG+TGG + chr8_1:27870782-27870801 None:intergenic 40.0%
ATGTTAACTGGCTAGATCCA+AGG - chr8_1:27870854-27870873 Msa1187900:CDS 40.0%
GGTTAAATTCTGGTCAACCT+AGG - chr8_1:27870880-27870899 Msa1187900:CDS 40.0%
TGCACGTGTTCTTTCCATTA+TGG + chr8_1:27870990-27871009 None:intergenic 40.0%
!! AAGTTGATATAACTGGGGTG+GGG + chr8_1:27871027-27871046 None:intergenic 40.0%
!! GAAGTTGATATAACTGGGGT+GGG + chr8_1:27871028-27871047 None:intergenic 40.0%
!! AGAAGTTGATATAACTGGGG+TGG + chr8_1:27871029-27871048 None:intergenic 40.0%
AGCTGCACCTCATAATTTGA+AGG - chr8_1:27871420-27871439 Msa1187900:CDS 40.0%
CATCACAGGAAATCATAGTG+TGG - chr8_1:27871558-27871577 Msa1187900:CDS 40.0%
GGAAATCATAGTGTGGTAGA+TGG - chr8_1:27871565-27871584 Msa1187900:CDS 40.0%
ATCATAGTGTGGTAGATGGT+TGG - chr8_1:27871569-27871588 Msa1187900:CDS 40.0%
GAGAGGAAGGAGAAGAATGA+AGG + chr8_1:27869267-27869286 None:intergenic 45.0%
AAAATGAGGAAGAGGGAGAG+AGG + chr8_1:27869284-27869303 None:intergenic 45.0%
GGAAGGGTAAAATGAGGAAG+AGG + chr8_1:27869292-27869311 None:intergenic 45.0%
AAGGAGAAGAGGTTTGTGCT+TGG + chr8_1:27869319-27869338 None:intergenic 45.0%
GAAGAAGAAGGAGAAGGAGA+AGG + chr8_1:27869338-27869357 None:intergenic 45.0%
GAAGGAGAAGAAGAAGGAGA+AGG + chr8_1:27869344-27869363 None:intergenic 45.0%
GAAGGAGAAGGAGAAGAAGA+AGG + chr8_1:27869350-27869369 None:intergenic 45.0%
GAAGGAATAGGAGAAGGAGA+CGG + chr8_1:27869458-27869477 None:intergenic 45.0%
GAAGTAGGAGTAGAAGGAGA+AGG + chr8_1:27869497-27869516 None:intergenic 45.0%
CATGGTTAAGAGAAGTGGAG+TGG + chr8_1:27869694-27869713 None:intergenic 45.0%
TCTTAACCATGCCGAGATTG+CGG - chr8_1:27869703-27869722 Msa1187900:intron 45.0%
TAACAACACCGATGTGTTGG+TGG - chr8_1:27869817-27869836 Msa1187900:intron 45.0%
CTGACCTTGTAAGCCTTAGT+AGG + chr8_1:27870046-27870065 None:intergenic 45.0%
TGTGAGATGAGTGAGCACAA+TGG + chr8_1:27870465-27870484 None:intergenic 45.0%
ATTGTGCTCACTCATCTCAC+AGG - chr8_1:27870464-27870483 Msa1187900:intron 45.0%
TTGTGCTCACTCATCTCACA+GGG - chr8_1:27870465-27870484 Msa1187900:intron 45.0%
AACTGGCTAGATCCAAGGAT+TGG - chr8_1:27870859-27870878 Msa1187900:CDS 45.0%
CCTTTCGTGTCTAACACAGT+TGG + chr8_1:27871299-27871318 None:intergenic 45.0%
CCAACTGTGTTAGACACGAA+AGG - chr8_1:27871296-27871315 Msa1187900:CDS 45.0%
GAGAGGAAGGAGAAGAATGA+AGG + chr8_1:27869267-27869286 None:intergenic 45.0%
AAAATGAGGAAGAGGGAGAG+AGG + chr8_1:27869284-27869303 None:intergenic 45.0%
GGAAGGGTAAAATGAGGAAG+AGG + chr8_1:27869292-27869311 None:intergenic 45.0%
AAGGAGAAGAGGTTTGTGCT+TGG + chr8_1:27869319-27869338 None:intergenic 45.0%
GAAGAAGAAGGAGAAGGAGA+AGG + chr8_1:27869338-27869357 None:intergenic 45.0%
GAAGGAGAAGAAGAAGGAGA+AGG + chr8_1:27869344-27869363 None:intergenic 45.0%
GAAGGAGAAGGAGAAGAAGA+AGG + chr8_1:27869350-27869369 None:intergenic 45.0%
GAAGGAATAGGAGAAGGAGA+CGG + chr8_1:27869458-27869477 None:intergenic 45.0%
GAAGTAGGAGTAGAAGGAGA+AGG + chr8_1:27869497-27869516 None:intergenic 45.0%
CATGGTTAAGAGAAGTGGAG+TGG + chr8_1:27869694-27869713 None:intergenic 45.0%
TCTTAACCATGCCGAGATTG+CGG - chr8_1:27869703-27869722 Msa1187900:intron 45.0%
TAACAACACCGATGTGTTGG+TGG - chr8_1:27869817-27869836 Msa1187900:intron 45.0%
CTGACCTTGTAAGCCTTAGT+AGG + chr8_1:27870046-27870065 None:intergenic 45.0%
TGTGAGATGAGTGAGCACAA+TGG + chr8_1:27870465-27870484 None:intergenic 45.0%
ATTGTGCTCACTCATCTCAC+AGG - chr8_1:27870464-27870483 Msa1187900:intron 45.0%
TTGTGCTCACTCATCTCACA+GGG - chr8_1:27870465-27870484 Msa1187900:intron 45.0%
AACTGGCTAGATCCAAGGAT+TGG - chr8_1:27870859-27870878 Msa1187900:CDS 45.0%
CCTTTCGTGTCTAACACAGT+TGG + chr8_1:27871299-27871318 None:intergenic 45.0%
CCAACTGTGTTAGACACGAA+AGG - chr8_1:27871296-27871315 Msa1187900:CDS 45.0%
!!! TAATTGTTTTTTAATTTTTT+TGG + chr8_1:27871089-27871108 None:intergenic 5.0%
!!! TAATTGTTTTTTAATTTTTT+TGG + chr8_1:27871089-27871108 None:intergenic 5.0%
GGAGGAGGAAGGGTAAAATG+AGG + chr8_1:27869298-27869317 None:intergenic 50.0%
GTTTGTGCTTGGAGGAGGAA+GGG + chr8_1:27869308-27869327 None:intergenic 50.0%
AAGAGGTTTGTGCTTGGAGG+AGG + chr8_1:27869313-27869332 None:intergenic 50.0%
GAGAAGAGGTTTGTGCTTGG+AGG + chr8_1:27869316-27869335 None:intergenic 50.0%
AGGAGAAGGAGAAGGAGAAG+AGG + chr8_1:27869330-27869349 None:intergenic 50.0%
ATAGGAGAAGGAGACGGAGT+AGG + chr8_1:27869452-27869471 None:intergenic 50.0%
GGAGGAGAAGGAATAGGAGA+AGG + chr8_1:27869464-27869483 None:intergenic 50.0%
GTAGAAGGAGAAGGAGAAGG+AGG + chr8_1:27869488-27869507 None:intergenic 50.0%
GGAGTAGAAGGAGAAGGAGA+AGG + chr8_1:27869491-27869510 None:intergenic 50.0%
!! GGAACGGATTGAGGAGAGAA+TGG + chr8_1:27869567-27869586 None:intergenic 50.0%
CTCAATCCGTTCCTCTCCTA+CGG - chr8_1:27869574-27869593 Msa1187900:CDS 50.0%
CTCGGCATGGTTAAGAGAAG+TGG + chr8_1:27869699-27869718 None:intergenic 50.0%
ATCGTCTAGTGCCGCAATCT+CGG + chr8_1:27869717-27869736 None:intergenic 50.0%
! CACCGATGTGTTGGTGGAAA+AGG - chr8_1:27869823-27869842 Msa1187900:intron 50.0%
AAGCGGAAGACTCGCAAACA+AGG - chr8_1:27870016-27870035 Msa1187900:intron 50.0%
TTGATATAACTGGGGTGGGG+TGG + chr8_1:27871024-27871043 None:intergenic 50.0%
GGAGGAGGAAGGGTAAAATG+AGG + chr8_1:27869298-27869317 None:intergenic 50.0%
GTTTGTGCTTGGAGGAGGAA+GGG + chr8_1:27869308-27869327 None:intergenic 50.0%
AAGAGGTTTGTGCTTGGAGG+AGG + chr8_1:27869313-27869332 None:intergenic 50.0%
GAGAAGAGGTTTGTGCTTGG+AGG + chr8_1:27869316-27869335 None:intergenic 50.0%
AGGAGAAGGAGAAGGAGAAG+AGG + chr8_1:27869330-27869349 None:intergenic 50.0%
ATAGGAGAAGGAGACGGAGT+AGG + chr8_1:27869452-27869471 None:intergenic 50.0%
GGAGGAGAAGGAATAGGAGA+AGG + chr8_1:27869464-27869483 None:intergenic 50.0%
GTAGAAGGAGAAGGAGAAGG+AGG + chr8_1:27869488-27869507 None:intergenic 50.0%
GGAGTAGAAGGAGAAGGAGA+AGG + chr8_1:27869491-27869510 None:intergenic 50.0%
!! GGAACGGATTGAGGAGAGAA+TGG + chr8_1:27869567-27869586 None:intergenic 50.0%
CTCAATCCGTTCCTCTCCTA+CGG - chr8_1:27869574-27869593 Msa1187900:CDS 50.0%
CTCGGCATGGTTAAGAGAAG+TGG + chr8_1:27869699-27869718 None:intergenic 50.0%
ATCGTCTAGTGCCGCAATCT+CGG + chr8_1:27869717-27869736 None:intergenic 50.0%
! CACCGATGTGTTGGTGGAAA+AGG - chr8_1:27869823-27869842 Msa1187900:intron 50.0%
AAGCGGAAGACTCGCAAACA+AGG - chr8_1:27870016-27870035 Msa1187900:intron 50.0%
TTGATATAACTGGGGTGGGG+TGG + chr8_1:27871024-27871043 None:intergenic 50.0%
TGAGGAAGAGGGAGAGAGGA+AGG + chr8_1:27869280-27869299 None:intergenic 55.0%
GGTTTGTGCTTGGAGGAGGA+AGG + chr8_1:27869309-27869328 None:intergenic 55.0%
GGAGGAGGAGGAGAAGGAAT+AGG + chr8_1:27869470-27869489 None:intergenic 55.0%
GAAGGAGAAGGAGAAGGAGG+AGG + chr8_1:27869485-27869504 None:intergenic 55.0%
!! CGTAGGAGAGGAACGGATTG+AGG + chr8_1:27869576-27869595 None:intergenic 55.0%
CCTAAATGGTAGGGGTCCGT+AGG + chr8_1:27869593-27869612 None:intergenic 55.0%
CCTACGGACCCCTACCATTT+AGG - chr8_1:27869590-27869609 Msa1187900:CDS 55.0%
TGAGGAAGAGGGAGAGAGGA+AGG + chr8_1:27869280-27869299 None:intergenic 55.0%
GGTTTGTGCTTGGAGGAGGA+AGG + chr8_1:27869309-27869328 None:intergenic 55.0%
GGAGGAGGAGGAGAAGGAAT+AGG + chr8_1:27869470-27869489 None:intergenic 55.0%
GAAGGAGAAGGAGAAGGAGG+AGG + chr8_1:27869485-27869504 None:intergenic 55.0%
!! CGTAGGAGAGGAACGGATTG+AGG + chr8_1:27869576-27869595 None:intergenic 55.0%
CCTAAATGGTAGGGGTCCGT+AGG + chr8_1:27869593-27869612 None:intergenic 55.0%
CCTACGGACCCCTACCATTT+AGG - chr8_1:27869590-27869609 Msa1187900:CDS 55.0%
GGAGAAGGAGGAGGAGGAGA+AGG + chr8_1:27869476-27869495 None:intergenic 60.0%
GGAGAAGGAGAAGGAGGAGG+AGG + chr8_1:27869482-27869501 None:intergenic 60.0%
AGGGGTCCGTAGGAGAGGAA+CGG + chr8_1:27869583-27869602 None:intergenic 60.0%
ATGGTAGGGGTCCGTAGGAG+AGG + chr8_1:27869588-27869607 None:intergenic 60.0%
CTAGTGCCGCAATCTCGGCA+TGG + chr8_1:27869712-27869731 None:intergenic 60.0%
GGAGAAGGAGGAGGAGGAGA+AGG + chr8_1:27869476-27869495 None:intergenic 60.0%
GGAGAAGGAGAAGGAGGAGG+AGG + chr8_1:27869482-27869501 None:intergenic 60.0%
AGGGGTCCGTAGGAGAGGAA+CGG + chr8_1:27869583-27869602 None:intergenic 60.0%
ATGGTAGGGGTCCGTAGGAG+AGG + chr8_1:27869588-27869607 None:intergenic 60.0%
CTAGTGCCGCAATCTCGGCA+TGG + chr8_1:27869712-27869731 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 27869245 27871645 27869245 ID=Msa1187900;Name=Msa1187900
chr8_1 mRNA 27869245 27871645 27869245 ID=Msa1187900-mRNA-1;Parent=Msa1187900;Name=Msa1187900-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|409
chr8_1 exon 27870800 27871645 27870800 ID=Msa1187900-mRNA-1:exon:9803;Parent=Msa1187900-mRNA-1
chr8_1 exon 27869245 27869628 27869245 ID=Msa1187900-mRNA-1:exon:9802;Parent=Msa1187900-mRNA-1
chr8_1 CDS 27870800 27871645 27870800 ID=Msa1187900-mRNA-1:cds;Parent=Msa1187900-mRNA-1
chr8_1 CDS 27869245 27869628 27869245 ID=Msa1187900-mRNA-1:cds;Parent=Msa1187900-mRNA-1
Gene Sequence

>Msa1187900

ATGTCAACCTCATCAACTTCCTTCATTCTTCTCCTTCCTCTCTCCCTCTTCCTCATTTTACCCTTCCTCCTCCAAGCACAAACCTCTTCTCCTTCTCCTTCTCCTTCTTCTTCTCCTTCTCCTTCTCATTCTTCTTCTCCTTCTCCTTCTCATTCTCATTCTTCTTCTCCTTTTCCTTCTCCTTCTACTTCTCATTCTTCTTCTCCTACTCCGTCTCCTTCTCCTATTCCTTCTCCTCCTCCTCCTTCTCCTTCTCCTTCTACTCCTACTTCTTCTTCCAAAGCATGCAAATCAACATTATATCCAAAACTATGTCGTTCCATTCTCTCCTCAATCCGTTCCTCTCCTACGGACCCCTACCATTTAGGAAAATTCTCAATAAAACAAAGCCTGAAACAAGCCAAAAAACTATCCAAAGTATTCAAAGACTTTCTCAAAAAACATCACCACTCCACTTCTCTTAACCATGCCGAGATTGCGGCACTAGACGATTGTAGTGAACTAAACCAGCTCAATGTAGATTACTTAGAGTTAGTCCGAGATGAACTTAAATCAGCTGATTCTTCATCTTTTAACAACACCGATGTGTTGGTGGAAAAGGTTGAAACTTATCTTAGTGCTGTGGCTACTAATCATTATACTTGTTTTGATGGGTTGGTTGTGACTAAAAGTAACATTGCTAATGCACTTGCTGTGCCATTGAGTAATGTTACACAATTATATAGTATTTCACTTGGGTTGGCCACTCAAGCTTTGAGTAAAAATATTAAGAAGCGGAAGACTCGCAAACAAGGTCTTCCTACTAAGGCTTACAAGGTCAGACAGCCACTTAAAAAGCTTATTAAGCTTCTTCACACAAAACACAGTTGCAATAACTCATCCAACTGTGTTAGACACGAAAGGATTCTTAAAGAAAGCGAAAATAGAGGAATTTTACTGAAAGAATATGTTATTGTGAGTCTTGATGGAACAGAAAACTTCACTTCTATTGGGGAAGCTATTGAAGCTGCACCTCATAATTTGAAGGCAGAAGATGGCTATTTTCTTATCTATGTCAAAGAAGGAGTATATGAAGAATATGTTGCTATTACAAAACATAAGAAGAATATCTTGCTTATTGGTGATGGTATTAACAAGACTTGCATCACAGGAAATCATAGTGTGGTAGATGGTTGGACCACTTTTAATTCTTCAACCTTTGGTAAGTCAAATTTTTTCAACTATACTTGA
Protein sequence

>Msa1187900

MSTSSTSFILLLPLSLFLILPFLLQAQTSSPSPSPSSSPSPSHSSSPSPSHSHSSSPFPSPSTSHSSSPTPSPSPIPSPPPPSPSPSTPTSSSKACKSTLYPKLCRSILSSIRSSPTDPYHLGKFSIKQSLKQAKKLSKVFKDFLKKHHHSTSLNHAEIAALDDCSELNQLNVDYLELVRDELKSADSSSFNNTDVLVEKVETYLSAVATNHYTCFDGLVVTKSNIANALAVPLSNVTQLYSISLGLATQALSKNIKKRKTRKQGLPTKAYKVRQPLKKLIKLLHTKHSCNNSSNCVRHERILKESENRGILLKEYVIVSLDGTENFTSIGEAIEAAPHNLKAEDGYFLIYVKEGVYEEYVAITKHKKNILLIGDGINKTCITGNHSVVDGWTTFNSSTFGKSNFFNYT*