AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0251120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251120 MtrunA17_Chr2g0309331 98.551 345 3 2 1 344 1 344 0.0 712
Msa0251120 MtrunA17_Chr8g0346001 74.556 169 31 2 5 162 10 177 6.79e-90 276
Msa0251120 MtrunA17_Chr5g0405211 56.148 244 97 4 5 239 3 245 3.63e-89 271
Msa0251120 MtrunA17_Chr4g0017921 72.067 179 45 4 10 186 8 183 1.36e-88 270
Msa0251120 MtrunA17_Chr4g0056541 48.701 308 116 8 10 292 7 297 3.94e-84 259
Msa0251120 MtrunA17_Chr4g0018391 47.284 313 128 9 10 297 7 307 8.46e-84 257
Msa0251120 MtrunA17_Chr8g0372121 47.751 289 120 5 7 293 3 262 2.29e-83 255
Msa0251120 MtrunA17_Chr5g0398971 44.272 323 114 9 10 297 7 298 7.52e-80 247
Msa0251120 MtrunA17_Chr1g0200561 42.090 354 157 8 7 334 16 347 3.69e-77 240
Msa0251120 MtrunA17_Chr3g0139331 50.909 165 77 2 4 167 5 166 1.12e-58 192
Msa0251120 MtrunA17_Chr6g0484441 53.374 163 72 2 7 169 2 160 2.96e-58 191
Msa0251120 MtrunA17_Chr6g0481091 57.051 156 61 4 8 160 4 156 3.24e-58 188
Msa0251120 MtrunA17_Chr1g0147421 53.988 163 70 3 7 167 24 183 6.12e-58 191
Msa0251120 MtrunA17_Chr2g0309891 53.846 156 67 3 8 160 4 157 1.04e-57 190
Msa0251120 MtrunA17_Chr3g0091921 43.933 239 109 7 7 224 13 247 1.61e-57 188
Msa0251120 MtrunA17_Chr2g0318101 41.441 222 112 4 4 210 9 227 6.46e-57 188
Msa0251120 MtrunA17_Chr2g0316971 55.346 159 63 3 10 163 23 178 6.51e-57 189
Msa0251120 MtrunA17_Chr4g0042561 46.970 198 94 4 2 193 1 193 6.90e-57 186
Msa0251120 MtrunA17_Chr4g0060931 52.761 163 69 3 7 165 14 172 6.21e-56 186
Msa0251120 MtrunA17_Chr3g0109821 53.846 156 67 3 8 160 4 157 6.21e-56 193
Msa0251120 MtrunA17_Chr5g0417791 48.148 189 86 5 8 190 1 183 7.03e-56 182
Msa0251120 MtrunA17_Chr7g0253011 53.750 160 64 3 8 160 15 171 1.98e-54 182
Msa0251120 MtrunA17_Chr3g0124761 51.220 164 70 3 5 163 2 160 1.99e-54 180
Msa0251120 MtrunA17_Chr5g0433781 52.903 155 69 3 8 160 4 156 4.62e-54 187
Msa0251120 MtrunA17_Chr7g0252971 47.368 171 73 3 4 160 2 169 5.76e-54 180
Msa0251120 MtrunA17_Chr6g0461661 53.125 160 67 3 8 162 16 172 9.41e-54 181
Msa0251120 MtrunA17_Chr6g0453451 50.595 168 75 3 2 165 12 175 2.03e-53 178
Msa0251120 MtrunA17_Chr2g0318081 50.595 168 74 4 6 171 12 172 5.71e-53 178
Msa0251120 MtrunA17_Chr3g0130731 50.932 161 69 3 6 161 3 158 3.08e-52 174
Msa0251120 MtrunA17_Chr7g0214071 45.263 190 91 4 1 189 6 183 3.91e-52 173
Msa0251120 MtrunA17_Chr8g0359921 50.296 169 73 4 7 171 11 172 5.45e-52 175
Msa0251120 MtrunA17_Chr5g0400461 50.920 163 68 4 6 160 2 160 1.33e-51 174
Msa0251120 MtrunA17_Chr8g0384721 48.837 172 75 4 2 167 1 165 6.68e-51 171
Msa0251120 MtrunA17_Chr6g0453131 45.029 171 80 3 12 171 17 184 9.78e-51 173
Msa0251120 MtrunA17_Chr2g0312321 50.955 157 68 4 7 160 8 158 1.08e-50 171
Msa0251120 MtrunA17_Chr4g0047841 43.889 180 72 3 10 163 15 191 2.09e-50 171
Msa0251120 MtrunA17_Chr7g0217721 51.176 170 62 4 13 165 22 187 2.39e-50 171
Msa0251120 MtrunA17_Chr7g0263931 47.126 174 82 3 7 173 8 178 2.53e-50 170
Msa0251120 MtrunA17_Chr1g0183741 51.282 156 70 4 9 163 9 159 6.50e-50 168
Msa0251120 MtrunA17_Chr2g0326361 45.550 191 92 4 9 190 13 200 2.51e-49 167
Msa0251120 MtrunA17_Chr3g0144271 46.701 197 92 6 3 192 16 206 3.59e-49 170
Msa0251120 MtrunA17_Chr4g0054791 48.824 170 75 5 2 165 1 164 1.20e-48 166
Msa0251120 MtrunA17_Chr3g0130101 50.658 152 71 3 12 161 9 158 1.85e-48 166
Msa0251120 MtrunA17_Chr7g0261411 51.656 151 67 4 9 158 9 154 1.92e-48 164
Msa0251120 MtrunA17_Chr7g0217711 60.156 128 47 2 13 140 22 145 2.09e-48 160
Msa0251120 MtrunA17_Chr8g0364791 47.647 170 81 4 12 175 8 175 3.05e-48 168
Msa0251120 MtrunA17_Chr5g0428991 52.258 155 70 3 10 162 25 177 7.24e-48 170
Msa0251120 MtrunA17_Chr1g0197351 48.315 178 78 4 9 174 41 216 1.10e-47 167
Msa0251120 MtrunA17_Chr8g0361731 46.012 163 73 3 12 162 16 175 1.25e-47 165
Msa0251120 MtrunA17_Chr5g0417001 41.799 189 94 4 9 186 13 196 1.09e-46 162
Msa0251120 MtrunA17_Chr4g0076731 48.026 152 76 1 9 160 53 201 5.39e-46 162
Msa0251120 MtrunA17_Chr1g0201021 47.682 151 75 3 12 160 21 169 5.44e-46 164
Msa0251120 MtrunA17_Chr3g0128111 48.026 152 75 3 13 162 45 194 8.69e-46 156
Msa0251120 MtrunA17_Chr3g0128151 49.359 156 75 3 9 162 21 174 1.15e-45 164
Msa0251120 MtrunA17_Chr8g0384201 45.882 170 84 4 12 175 8 175 9.14e-45 160
Msa0251120 MtrunA17_Chr3g0092671 46.753 154 78 4 12 163 7 158 4.55e-44 159
Msa0251120 MtrunA17_Chr1g0197361 45.294 170 84 5 12 174 10 177 3.27e-43 157
Msa0251120 MtrunA17_Chr2g0311651 43.605 172 78 5 6 160 17 186 3.52e-43 151
Msa0251120 MtrunA17_Chr2g0311661 41.989 181 86 5 10 173 20 198 1.05e-42 149
Msa0251120 MtrunA17_Chr4g0038751 46.707 167 81 5 12 176 17 177 4.19e-42 148
Msa0251120 MtrunA17_Chr5g0442771 40.782 179 90 4 9 174 17 192 2.14e-41 147
Msa0251120 MtrunA17_Chr8g0385991 40.212 189 100 4 6 186 10 193 1.45e-40 142
Msa0251120 MtrunA17_Chr3g0131911 42.105 171 83 4 5 164 9 174 3.77e-38 136
Msa0251120 MtrunA17_Chr2g0321631 37.766 188 101 5 11 186 5 188 1.53e-35 129
Msa0251120 MtrunA17_Chr3g0113001 54.310 116 45 4 54 162 4 118 9.70e-34 126
Msa0251120 MtrunA17_Chr4g0026141 36.508 189 104 6 7 182 2 187 1.17e-33 125
Msa0251120 MtrunA17_Chr8g0345671 48.462 130 63 4 10 137 11 138 3.42e-32 124
Msa0251120 MtrunA17_Chr8g0345691 45.333 150 75 5 10 157 12 156 2.87e-31 122
Msa0251120 MtrunA17_Chr2g0321741 46.269 134 62 4 30 163 12 135 3.94e-31 120
Msa0251120 MtrunA17_Chr4g0050701 36.364 165 85 5 10 165 11 164 6.71e-31 115
Msa0251120 MtrunA17_Chr3g0113031 55.102 98 33 3 76 165 3 97 1.85e-29 114
Msa0251120 MtrunA17_Chr7g0266701 36.310 168 97 3 10 167 4 171 5.20e-28 109
Msa0251120 MtrunA17_Chr8g0345711 41.212 165 78 8 10 158 12 173 8.59e-28 107
Msa0251120 MtrunA17_Chr8g0345731 41.667 156 79 6 10 160 24 172 8.81e-26 101
Msa0251120 MtrunA17_Chr7g0243371 52.564 78 36 1 66 142 17 94 1.36e-23 94.0
Msa0251120 MtrunA17_Chr8g0345741 44.538 119 62 4 21 137 2 118 5.70e-22 90.9
Msa0251120 MtrunA17_Chr8g0345721 37.419 155 66 5 13 137 38 191 6.10e-22 92.4
Msa0251120 MtrunA17_Chr8g0384351 34.161 161 84 6 1 161 1 139 1.74e-21 90.5
Msa0251120 MtrunA17_Chr8g0345701 38.065 155 76 6 9 147 6 156 6.73e-21 88.6
Msa0251120 MtrunA17_Chr3g0130321 31.928 166 89 6 8 159 5 160 8.29e-21 89.0
Msa0251120 MtrunA17_Chr7g0251661 29.496 139 94 3 1 139 1 135 1.24e-15 73.6
Msa0251120 MtrunA17_Chr7g0251651 30.769 130 86 3 8 137 16 141 4.32e-13 67.4
Msa0251120 MtrunA17_Chr4g0040541 31.737 167 88 7 10 158 48 206 4.76e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251120 AT1G79580.3 54.005 387 110 12 2 344 9 371 4.60e-116 341
Msa0251120 AT1G79580.5 54.005 387 110 12 2 344 9 371 4.60e-116 341
Msa0251120 AT1G79580.4 54.005 387 110 12 2 344 9 371 4.60e-116 341
Msa0251120 AT1G79580.2 54.005 387 110 12 2 344 9 371 4.60e-116 341
Msa0251120 AT1G79580.1 54.005 387 110 12 2 344 9 371 4.60e-116 341
Msa0251120 AT2G18060.3 48.052 308 137 6 2 293 1 301 6.61e-93 281
Msa0251120 AT2G18060.1 48.052 308 137 6 2 293 1 301 6.61e-93 281
Msa0251120 AT4G10350.1 48.348 333 136 10 2 314 1 317 8.72e-92 278
Msa0251120 AT4G36160.2 49.191 309 121 8 9 293 13 309 2.41e-90 276
Msa0251120 AT4G36160.1 49.191 309 121 8 9 293 9 305 2.62e-90 275
Msa0251120 AT4G36160.3 49.191 309 121 8 9 293 9 305 2.62e-90 275
Msa0251120 AT1G32770.1 49.831 295 114 7 5 271 11 299 4.92e-86 264
Msa0251120 AT1G33280.1 75.817 153 35 2 10 162 8 158 1.80e-85 260
Msa0251120 AT2G46770.1 66.851 181 44 3 6 171 12 191 2.49e-85 262
Msa0251120 AT3G61910.1 68.786 173 38 3 5 162 6 177 4.21e-82 253
Msa0251120 AT5G66300.1 45.364 302 127 8 9 296 11 288 1.03e-80 248
Msa0251120 AT1G12260.2 72.368 152 41 1 10 161 7 157 1.03e-79 247
Msa0251120 AT1G12260.1 72.368 152 41 1 10 161 7 157 1.42e-79 248
Msa0251120 AT1G62700.1 73.026 152 40 1 10 161 7 157 5.31e-79 247
Msa0251120 AT1G62700.2 73.026 152 40 1 10 161 7 157 5.31e-79 247
Msa0251120 AT1G71930.2 44.595 296 125 7 9 292 8 276 3.57e-77 240
Msa0251120 AT1G71930.1 44.595 296 125 7 9 292 8 276 3.57e-77 240
Msa0251120 AT5G62380.2 65.823 158 53 1 10 167 7 163 1.69e-76 239
Msa0251120 AT5G62380.1 65.823 158 53 1 10 167 7 163 1.69e-76 239
Msa0251120 AT4G10350.2 44.286 280 120 10 55 314 7 270 9.33e-60 194
Msa0251120 AT2G24430.2 55.215 163 68 3 7 167 13 172 1.20e-59 194
Msa0251120 AT2G24430.1 55.215 163 68 3 7 167 13 172 1.20e-59 194
Msa0251120 AT3G17730.1 54.217 166 70 4 8 170 4 166 1.75e-58 189
Msa0251120 AT1G69490.1 50.000 170 75 3 2 165 1 166 9.96e-58 188
Msa0251120 AT5G07680.2 57.325 157 59 3 8 160 1 153 1.19e-57 189
Msa0251120 AT5G07680.1 56.962 158 60 3 7 160 14 167 1.30e-57 190
Msa0251120 AT3G18400.1 57.051 156 60 4 7 160 2 152 2.98e-57 188
Msa0251120 AT5G39610.1 53.333 165 69 3 1 161 11 171 9.90e-57 186
Msa0251120 AT5G61430.1 55.696 158 62 3 7 160 13 166 1.55e-56 187
Msa0251120 AT1G76420.1 55.128 156 65 3 7 160 19 171 1.61e-56 187
Msa0251120 AT1G65910.1 49.724 181 83 4 8 186 4 178 2.56e-56 194
Msa0251120 AT1G61110.1 46.154 182 81 2 4 171 10 188 4.82e-56 186
Msa0251120 AT5G17260.1 55.128 156 65 3 8 160 4 157 6.91e-56 189
Msa0251120 AT1G77450.1 48.315 178 82 3 1 173 1 173 1.03e-55 182
Msa0251120 AT5G18270.2 48.223 197 89 5 4 193 14 204 1.11e-55 185
Msa0251120 AT3G03200.1 55.769 156 64 3 8 160 4 157 2.77e-55 187
Msa0251120 AT5G18270.1 47.716 197 90 5 4 193 14 204 4.04e-55 183
Msa0251120 AT3G04060.1 53.503 157 66 2 8 160 18 171 1.81e-54 182
Msa0251120 AT1G54330.1 56.209 153 64 3 8 160 4 153 2.08e-54 181
Msa0251120 AT3G29035.1 54.037 161 66 3 2 158 16 172 3.63e-54 181
Msa0251120 AT3G15170.1 53.086 162 68 3 7 163 17 175 3.94e-54 180
Msa0251120 AT5G46590.1 54.430 158 68 2 6 160 2 158 6.16e-54 179
Msa0251120 AT5G63790.2 47.727 176 80 3 6 174 56 226 3.72e-53 178
Msa0251120 AT5G63790.1 47.727 176 80 3 6 174 46 216 4.32e-53 177
Msa0251120 AT5G53950.1 53.205 156 65 3 10 160 17 169 5.10e-53 179
Msa0251120 AT3G04070.2 47.486 179 78 3 1 166 1 176 5.54e-53 178
Msa0251120 AT4G27410.2 48.087 183 85 5 7 187 11 185 2.62e-52 175
Msa0251120 AT3G15500.1 49.686 159 74 3 7 163 11 165 3.37e-52 175
Msa0251120 AT5G08790.1 50.595 168 71 4 7 167 4 166 4.87e-52 174
Msa0251120 AT5G46590.2 57.447 141 59 1 6 146 2 141 5.83e-52 174
Msa0251120 AT1G52890.1 49.686 159 74 3 7 163 11 165 8.16e-52 174
Msa0251120 AT3G12977.1 52.229 157 68 3 7 160 15 167 2.17e-51 172
Msa0251120 AT1G01720.1 46.409 181 78 4 8 174 5 180 3.50e-51 172
Msa0251120 AT3G04070.1 42.991 214 82 5 1 177 1 211 3.68e-51 174
Msa0251120 AT5G04410.1 51.534 163 74 4 4 163 2 162 4.80e-51 178
Msa0251120 AT3G15510.1 39.713 209 100 5 14 202 21 223 2.86e-50 172
Msa0251120 AT3G10500.1 51.534 163 74 4 4 163 2 162 3.06e-50 176
Msa0251120 AT3G10490.1 49.133 173 79 4 9 174 26 196 3.32e-50 167
Msa0251120 AT5G24590.2 51.923 156 72 2 9 162 12 166 4.50e-50 173
Msa0251120 AT2G33480.2 48.466 163 77 2 2 164 7 162 5.35e-50 168
Msa0251120 AT3G10480.1 51.592 157 71 3 9 162 26 180 1.78e-49 172
Msa0251120 AT4G27410.3 45.685 197 86 6 7 187 11 202 2.25e-49 168
Msa0251120 AT2G33480.1 49.091 165 75 3 2 164 7 164 2.58e-49 166
Msa0251120 AT3G10490.2 50.617 162 75 3 4 162 21 180 8.18e-49 170
Msa0251120 AT5G39820.1 43.386 189 79 5 9 173 19 203 1.78e-48 166
Msa0251120 AT4G17980.1 51.875 160 71 4 6 160 2 160 5.25e-48 163
Msa0251120 AT5G13180.1 49.057 159 73 3 5 161 9 161 1.27e-47 161
Msa0251120 AT4G17980.2 51.875 160 71 4 6 160 2 160 1.28e-47 162
Msa0251120 AT2G43000.1 48.101 158 75 3 12 166 20 173 1.53e-47 162
Msa0251120 AT3G10480.2 51.592 157 70 4 9 162 26 179 1.62e-47 166
Msa0251120 AT1G26870.1 46.951 164 72 3 12 163 18 178 2.76e-47 165
Msa0251120 AT1G56010.2 48.750 160 72 4 7 160 16 171 6.72e-47 162
Msa0251120 AT3G49530.2 47.742 155 78 2 9 161 12 165 7.02e-47 164
Msa0251120 AT5G09330.5 40.179 224 120 6 6 220 2 220 9.26e-47 165
Msa0251120 AT5G09330.2 40.179 224 120 6 6 220 2 220 9.26e-47 165
Msa0251120 AT5G09330.4 40.179 224 120 6 6 220 2 220 9.26e-47 165
Msa0251120 AT5G09330.3 40.179 224 120 6 6 220 2 220 9.26e-47 165
Msa0251120 AT5G09330.1 40.179 224 120 6 6 220 2 220 9.26e-47 165
Msa0251120 AT3G49530.1 45.614 171 86 3 9 173 12 181 1.26e-46 164
Msa0251120 AT2G02450.1 44.199 181 88 2 10 190 51 218 2.43e-46 162
Msa0251120 AT2G02450.2 44.199 181 88 2 10 190 51 218 3.35e-46 162
Msa0251120 AT3G10480.3 43.386 189 71 3 9 162 26 213 8.32e-45 161
Msa0251120 AT4G28530.1 48.521 169 63 7 10 160 10 172 8.80e-45 157
Msa0251120 AT1G52880.1 40.090 222 107 6 14 217 21 234 9.58e-45 156
Msa0251120 AT5G64060.1 43.750 176 91 4 6 175 2 175 1.37e-44 156
Msa0251120 AT1G33060.2 47.337 169 83 4 9 173 23 189 2.79e-44 161
Msa0251120 AT1G33060.1 47.337 169 83 4 9 173 23 189 3.12e-44 161
Msa0251120 AT4G35580.1 49.359 156 75 3 9 162 8 161 6.58e-44 158
Msa0251120 AT1G32510.1 46.250 160 76 3 10 160 6 164 6.94e-44 152
Msa0251120 AT4G35580.3 49.359 156 75 3 9 162 8 161 9.43e-44 158
Msa0251120 AT4G35580.2 49.359 156 75 3 9 162 8 161 1.11e-43 158
Msa0251120 AT1G34190.1 43.709 151 81 3 12 160 18 166 1.41e-42 155
Msa0251120 AT5G22290.1 41.899 179 97 3 9 187 20 191 1.49e-42 150
Msa0251120 AT2G27300.1 40.113 177 93 4 2 173 1 169 7.08e-42 149
Msa0251120 AT1G34180.3 41.722 151 84 3 12 160 18 166 2.66e-41 150
Msa0251120 AT2G17040.1 43.636 165 85 4 12 174 8 166 4.91e-41 145
Msa0251120 AT1G34180.1 41.722 151 84 3 12 160 18 166 6.75e-41 150
Msa0251120 AT3G44290.2 44.079 152 75 4 12 163 16 157 1.92e-39 139
Msa0251120 AT1G34180.4 39.877 163 82 5 12 160 18 178 4.38e-39 144
Msa0251120 AT1G34180.2 39.877 163 82 5 12 160 18 178 8.04e-39 145
Msa0251120 AT2G18060.2 38.356 219 112 6 91 293 2 213 8.58e-39 139
Msa0251120 AT5G04395.1 45.860 157 73 2 1 145 19 175 1.05e-38 136
Msa0251120 AT3G44290.1 44.079 152 75 4 12 163 16 157 1.52e-38 140
Msa0251120 AT3G12910.1 40.331 181 84 5 12 173 23 198 4.92e-38 138
Msa0251120 AT5G61430.2 59.596 99 35 2 66 160 6 103 5.47e-36 132
Msa0251120 AT1G32870.2 41.772 158 84 4 10 163 10 163 2.67e-34 132
Msa0251120 AT1G32870.1 41.772 158 84 4 10 163 10 163 2.77e-34 132
Msa0251120 AT1G32870.3 41.772 158 84 4 10 163 46 199 3.65e-34 132
Msa0251120 AT3G12977.2 54.128 109 43 3 55 160 10 114 1.73e-33 124
Msa0251120 AT1G56010.1 55.102 98 38 2 68 160 8 104 8.32e-32 120
Msa0251120 AT5G22380.1 36.364 176 97 6 7 172 4 174 7.69e-29 112
Msa0251120 AT2G33480.3 50.000 106 50 2 61 164 3 107 9.47e-29 110
Msa0251120 AT3G44350.2 33.333 189 111 6 7 187 4 185 9.51e-29 112
Msa0251120 AT5G64530.1 35.882 170 77 6 8 160 1 155 8.38e-27 105
Msa0251120 AT3G44350.1 40.146 137 72 4 7 138 4 135 1.21e-26 103
Msa0251120 AT5G64530.2 41.481 135 63 5 8 141 1 120 2.56e-26 102
Msa0251120 AT1G02230.1 44.275 131 65 5 11 137 4 130 3.87e-25 104
Msa0251120 AT4G28530.2 42.017 119 48 4 10 111 10 124 1.36e-24 102
Msa0251120 AT3G04420.2 41.860 129 71 4 11 137 4 130 1.49e-23 99.0
Msa0251120 AT4G01520.1 37.423 163 93 6 11 168 5 163 2.58e-23 98.6
Msa0251120 AT3G04420.1 41.860 129 71 4 11 137 4 130 3.33e-23 99.0
Msa0251120 AT4G01540.4 37.654 162 90 7 13 168 7 163 1.62e-22 97.8
Msa0251120 AT4G01550.1 37.086 151 88 4 13 160 7 153 1.62e-22 98.2
Msa0251120 AT4G01540.3 37.654 162 90 7 13 168 7 163 1.69e-22 97.8
Msa0251120 AT4G01540.2 37.654 162 90 7 13 168 7 163 1.95e-22 97.8
Msa0251120 AT4G01540.1 37.654 162 90 7 13 168 7 163 2.26e-22 98.2
Msa0251120 AT1G02250.1 42.424 132 66 5 11 137 4 130 1.49e-21 94.7
Msa0251120 AT2G43000.2 44.681 94 48 2 75 165 2 94 8.29e-21 89.4
Msa0251120 AT1G02220.1 41.667 132 70 5 8 137 1 127 9.05e-21 92.8
Msa0251120 AT3G10490.4 51.250 80 35 2 86 162 2 80 1.64e-20 91.7
Msa0251120 AT3G10490.3 51.250 80 35 2 86 162 2 80 1.64e-20 91.7
Msa0251120 AT5G50820.1 35.461 141 65 6 8 139 15 138 1.73e-18 82.8
Msa0251120 AT1G01010.1 35.065 154 85 7 13 157 6 153 7.16e-18 84.7
Msa0251120 AT5G14000.1 30.000 190 119 6 6 190 11 191 4.07e-17 79.3
Msa0251120 AT5G22290.2 37.864 103 59 2 92 194 2 99 4.38e-16 77.0
Msa0251120 AT3G56530.1 26.623 154 108 3 7 158 49 199 9.09e-15 74.7
Msa0251120 AT5G14000.2 29.932 147 95 3 6 150 11 151 3.99e-14 69.7
Msa0251120 AT3G04430.1 35.075 134 71 5 16 137 6 135 5.69e-12 64.7

Find 81 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTCATTCCAATCCTTT+TGG 0.284680 2_2:-40305625 None:intergenic
TAACAGTTCCTCCAGGGTTT+AGG 0.294791 2_2:+40304646 Msa0251120:CDS
GAGCAACTACAGCTGGGTTT+TGG 0.302263 2_2:+40305562 Msa0251120:CDS
GGTGCAGCCTGGTGATTATT+AGG 0.325193 2_2:-40306369 None:intergenic
TTTGGAATTGGTGTGATATA+TGG 0.337061 2_2:-40305607 None:intergenic
CTTCTTCTTCAATTTCTTGT+TGG 0.338565 2_2:-40305948 None:intergenic
TGCATGTGGTGATGATGTTT+TGG 0.340644 2_2:-40306027 None:intergenic
ATGGAATGGATCTTAATCTA+AGG 0.356177 2_2:+40306328 Msa0251120:CDS
AACACCACCACCACCTTTGA+TGG 0.356402 2_2:+40306078 Msa0251120:CDS
GGTACTGCTATAGCTGATTC+TGG 0.362952 2_2:-40306129 None:intergenic
CTATTTGTTCTTGTTCCTGT+TGG 0.367370 2_2:-40305540 None:intergenic
AAACTACTTGCATCACATAA+TGG 0.372472 2_2:+40306309 Msa0251120:CDS
TGGTGGTGATTGGTCATTCT+TGG 0.375350 2_2:+40306284 Msa0251120:CDS
TATTTGTTCTTGTTCCTGTT+GGG 0.389319 2_2:-40305539 None:intergenic
TGATGATAATGCAGAAGTTC+AGG 0.405616 2_2:+40305725 Msa0251120:CDS
TTTGGTTCTAGAAAATGGTT+TGG 0.426326 2_2:-40306009 None:intergenic
ATCTCAACAGACTTGAGCCT+TGG 0.426871 2_2:+40304760 Msa0251120:CDS
GATAAGTGTAGGATTGGATC+AGG 0.432547 2_2:+40305471 Msa0251120:intron
GGATGTCCATTGATGAGTTA+TGG 0.436712 2_2:-40306164 None:intergenic
CTCATGGTCACAAAACTGAT+TGG 0.440810 2_2:+40305676 Msa0251120:CDS
TCACAACCAAGGTAATGAAA+TGG 0.449921 2_2:-40306429 None:intergenic
CACACCAATTCCAAAAGGAT+TGG 0.463232 2_2:+40305615 Msa0251120:CDS
GAAGTTCCAACAGCAGTAGA+AGG 0.470021 2_2:-40306390 None:intergenic
ACAAATAGAGCAACTACAGC+TGG 0.470753 2_2:+40305555 Msa0251120:CDS
AAATTTCCATTTCATTACCT+TGG 0.472448 2_2:+40306423 Msa0251120:CDS
GTTGCAGATAAGTGTAGGAT+TGG 0.472884 2_2:+40305465 Msa0251120:intron
TCTCAACAGACTTGAGCCTT+GGG 0.476536 2_2:+40304761 Msa0251120:CDS
TTCCTTCCATAACTCATCAA+TGG 0.495467 2_2:+40306158 Msa0251120:CDS
AAGATGGATGGGTAGTATGC+AGG 0.497034 2_2:+40305893 Msa0251120:CDS
TACAGAATGATGCAAGGTAG+TGG 0.509628 2_2:+40304618 None:intergenic
GCTGCACCTTCTACTGCTGT+TGG 0.514057 2_2:+40306384 Msa0251120:CDS
TCTGATAACATCAAGATCAA+TGG 0.515700 2_2:-40304730 None:intergenic
GATGAGTTATGGAAGGAAGT+TGG 0.517420 2_2:-40306153 None:intergenic
TAAAGAAGCTCCTCATCAGT+TGG 0.517483 2_2:-40304675 None:intergenic
GGTTGATCAGTGGTGGTGAT+TGG 0.522276 2_2:+40306274 Msa0251120:CDS
CATCACCACATGCAACAACT+AGG 0.527478 2_2:+40306036 Msa0251120:CDS
GGAGAATTAACAGTTCCTCC+AGG 0.530256 2_2:+40304639 Msa0251120:CDS
TATATCACACCAATTCCAAA+AGG 0.530691 2_2:+40305610 Msa0251120:CDS
ACAACAACAAATACTAGCTC+AGG 0.532614 2_2:+40306216 Msa0251120:CDS
AATGCTCTCAAAATTTGTTG+AGG 0.538669 2_2:+40306190 Msa0251120:CDS
AAAGAAGCTCCTCATCAGTT+GGG 0.540956 2_2:-40304674 None:intergenic
AAAACCTTAGTCTTCTACAC+TGG 0.541616 2_2:+40305645 Msa0251120:CDS
TACACTGGACGTGCTCCTCA+TGG 0.542939 2_2:+40305660 Msa0251120:CDS
GACCATTTGTTGATCTCATG+TGG 0.545405 2_2:-40305987 None:intergenic
AAGGACAAGAAATACCCAAC+AGG 0.548438 2_2:+40305525 Msa0251120:CDS
AGCAACAACAACAAGGAGAA+AGG 0.551906 2_2:+40306253 Msa0251120:CDS
AGATGGATGGGTAGTATGCA+GGG 0.553010 2_2:+40305894 Msa0251120:CDS
GAGAATTAACAGTTCCTCCA+GGG 0.560980 2_2:+40304640 Msa0251120:CDS
AGCTTCTTTACTATTACTTG+AGG 0.562735 2_2:+40304688 Msa0251120:CDS
CAGCAGTAGAAGGTGCAGCC+TGG 0.565773 2_2:-40306380 None:intergenic
AACCACATGAGATCAACAAA+TGG 0.569176 2_2:+40305985 Msa0251120:CDS
TGTACCATCAAAGGTGGTGG+TGG 0.569923 2_2:-40306082 None:intergenic
ATTCCAAAAGGATTGGAATG+AGG 0.575697 2_2:+40305622 Msa0251120:CDS
TAGATGAATTGTACCATCAA+AGG 0.576851 2_2:-40306091 None:intergenic
ACGTCCAGTGTAGAAGACTA+AGG 0.581693 2_2:-40305649 None:intergenic
TGTGTACCTTTGAGATCCCA+AGG 0.590405 2_2:-40304777 None:intergenic
ACTTGCATCACATAATGGAA+TGG 0.590814 2_2:+40306314 Msa0251120:CDS
TAGGTTCCACCCAACTGATG+AGG 0.590857 2_2:+40304665 Msa0251120:CDS
CAAATAGAGCAACTACAGCT+GGG 0.601722 2_2:+40305556 Msa0251120:CDS
GTCCATTGATGAGTTATGGA+AGG 0.603236 2_2:-40306160 None:intergenic
GATCAGGGCCACAGAATGAG+TGG 0.613670 2_2:+40305487 Msa0251120:CDS
AAGAAATACCACTCATTCTG+TGG 0.620194 2_2:-40305495 None:intergenic
CTCATGCAGCAACAACAACA+AGG 0.622496 2_2:+40306246 Msa0251120:CDS
CTTGAGCCTTGGGATCTCAA+AGG 0.623707 2_2:+40304771 Msa0251120:CDS
GGAGAAAGGTTGATCAGTGG+TGG 0.631877 2_2:+40306267 Msa0251120:CDS
GAAGCTCCTCATCAGTTGGG+TGG 0.635468 2_2:-40304671 None:intergenic
TAACACTCCTAATAATCACC+AGG 0.641336 2_2:+40306362 Msa0251120:CDS
AATTGTACCATCAAAGGTGG+TGG 0.642998 2_2:-40306085 None:intergenic
CATTATCATCATCATCAAGA+CGG 0.647901 2_2:-40305713 None:intergenic
GAGTTATGGAAGGAAGTTGG+TGG 0.649529 2_2:-40306150 None:intergenic
GTGGTATTTCTTCAGTCACA+AGG 0.650969 2_2:+40305506 Msa0251120:CDS
ATGAATTGTACCATCAAAGG+TGG 0.652155 2_2:-40306088 None:intergenic
GTTGGGTGGAACCTAAACCC+TGG 0.653580 2_2:-40304657 None:intergenic
GATTCTGGACTGAACAATTG+TGG 0.660692 2_2:-40306114 None:intergenic
TCTGTATACAGAATGATGCA+AGG 0.666488 2_2:+40304612 None:intergenic
CACTTGTTGCAGATAAGTGT+AGG 0.683334 2_2:+40305460 Msa0251120:intron
CAAGGAGAAAGGTTGATCAG+TGG 0.686081 2_2:+40306264 Msa0251120:CDS
ATAAGTGTAGGATTGGATCA+GGG 0.691336 2_2:+40305472 Msa0251120:CDS
TATCATGAGACTCACAACCA+AGG 0.694185 2_2:-40306440 None:intergenic
ATAGTCCTAGTTGTTGCATG+TGG 0.699173 2_2:-40306041 None:intergenic
GGGTGGAACCTAAACCCTGG+AGG 0.757480 2_2:-40304654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTCATACTATATATATAT+AGG + chr2_2:40304943-40304962 Msa0251120:intron 15.0%
!! TTATATATGAACTAATACTA+TGG + chr2_2:40305011-40305030 Msa0251120:intron 15.0%
!! AATATATGTAATCTATCAAA+TGG + chr2_2:40305827-40305846 Msa0251120:intron 15.0%
!! GTTTCATACTATATATATAT+AGG + chr2_2:40304943-40304962 Msa0251120:intron 15.0%
!! TTATATATGAACTAATACTA+TGG + chr2_2:40305011-40305030 Msa0251120:intron 15.0%
!! AATATATGTAATCTATCAAA+TGG + chr2_2:40305827-40305846 Msa0251120:intron 15.0%
!! AGCAATATATTTAATAAGGT+TGG - chr2_2:40305062-40305081 None:intergenic 20.0%
!! GAGAAGCAATATATTTAATA+AGG - chr2_2:40305066-40305085 None:intergenic 20.0%
!!! GTGTTTTTAGTTTGTATTAA+TGG - chr2_2:40305168-40305187 None:intergenic 20.0%
!!! CTATATTTTTCAAATCATTG+CGG - chr2_2:40305277-40305296 None:intergenic 20.0%
!! AGCAATATATTTAATAAGGT+TGG - chr2_2:40305062-40305081 None:intergenic 20.0%
!! GAGAAGCAATATATTTAATA+AGG - chr2_2:40305066-40305085 None:intergenic 20.0%
!!! GTGTTTTTAGTTTGTATTAA+TGG - chr2_2:40305168-40305187 None:intergenic 20.0%
!!! CTATATTTTTCAAATCATTG+CGG - chr2_2:40305277-40305296 None:intergenic 20.0%
! TATACATGCTGAAATATGAT+CGG + chr2_2:40305104-40305123 Msa0251120:intron 25.0%
!! ACTACAAAACTATTTTACAC+CGG + chr2_2:40305132-40305151 Msa0251120:intron 25.0%
! CGCAATGATTTGAAAAATAT+AGG + chr2_2:40305275-40305294 Msa0251120:intron 25.0%
!!! ATCTCATGAATTTGTTTTTC+AGG + chr2_2:40305870-40305889 Msa0251120:intron 25.0%
! AAATTTCCATTTCATTACCT+TGG + chr2_2:40306423-40306442 Msa0251120:CDS 25.0%
! TATACATGCTGAAATATGAT+CGG + chr2_2:40305104-40305123 Msa0251120:intron 25.0%
!! ACTACAAAACTATTTTACAC+CGG + chr2_2:40305132-40305151 Msa0251120:intron 25.0%
! CGCAATGATTTGAAAAATAT+AGG + chr2_2:40305275-40305294 Msa0251120:intron 25.0%
!!! ATCTCATGAATTTGTTTTTC+AGG + chr2_2:40305870-40305889 Msa0251120:intron 25.0%
! AAATTTCCATTTCATTACCT+TGG + chr2_2:40306423-40306442 Msa0251120:CDS 25.0%
AGCTTCTTTACTATTACTTG+AGG + chr2_2:40304688-40304707 Msa0251120:CDS 30.0%
TCTGATAACATCAAGATCAA+TGG - chr2_2:40304733-40304752 None:intergenic 30.0%
CTAAATGTAATCACATGTGT+CGG + chr2_2:40305301-40305320 Msa0251120:intron 30.0%
TATTTGTTCTTGTTCCTGTT+GGG - chr2_2:40305542-40305561 None:intergenic 30.0%
! TTTGGAATTGGTGTGATATA+TGG - chr2_2:40305610-40305629 None:intergenic 30.0%
TATATCACACCAATTCCAAA+AGG + chr2_2:40305610-40305629 Msa0251120:CDS 30.0%
CATTATCATCATCATCAAGA+CGG - chr2_2:40305716-40305735 None:intergenic 30.0%
TCATGAGATGCTTAATTACT+TGG - chr2_2:40305859-40305878 None:intergenic 30.0%
!!! GAATTTGTTTTTCAGGAAGA+TGG + chr2_2:40305877-40305896 Msa0251120:intron 30.0%
CTTCTTCTTCAATTTCTTGT+TGG - chr2_2:40305951-40305970 None:intergenic 30.0%
!! TTTGGTTCTAGAAAATGGTT+TGG - chr2_2:40306012-40306031 None:intergenic 30.0%
!!! GATGTTTTGGTTCTAGAAAA+TGG - chr2_2:40306017-40306036 None:intergenic 30.0%
TAGATGAATTGTACCATCAA+AGG - chr2_2:40306094-40306113 None:intergenic 30.0%
!!! ACAAATTTTGAGAGCATTCA+AGG - chr2_2:40306188-40306207 None:intergenic 30.0%
!! AATGCTCTCAAAATTTGTTG+AGG + chr2_2:40306190-40306209 Msa0251120:CDS 30.0%
AAACTACTTGCATCACATAA+TGG + chr2_2:40306309-40306328 Msa0251120:CDS 30.0%
ATGGAATGGATCTTAATCTA+AGG + chr2_2:40306328-40306347 Msa0251120:CDS 30.0%
AGCTTCTTTACTATTACTTG+AGG + chr2_2:40304688-40304707 Msa0251120:CDS 30.0%
TCTGATAACATCAAGATCAA+TGG - chr2_2:40304733-40304752 None:intergenic 30.0%
CTAAATGTAATCACATGTGT+CGG + chr2_2:40305301-40305320 Msa0251120:intron 30.0%
TATTTGTTCTTGTTCCTGTT+GGG - chr2_2:40305542-40305561 None:intergenic 30.0%
! TTTGGAATTGGTGTGATATA+TGG - chr2_2:40305610-40305629 None:intergenic 30.0%
TATATCACACCAATTCCAAA+AGG + chr2_2:40305610-40305629 Msa0251120:CDS 30.0%
CATTATCATCATCATCAAGA+CGG - chr2_2:40305716-40305735 None:intergenic 30.0%
TCATGAGATGCTTAATTACT+TGG - chr2_2:40305859-40305878 None:intergenic 30.0%
!!! GAATTTGTTTTTCAGGAAGA+TGG + chr2_2:40305877-40305896 Msa0251120:intron 30.0%
CTTCTTCTTCAATTTCTTGT+TGG - chr2_2:40305951-40305970 None:intergenic 30.0%
!! TTTGGTTCTAGAAAATGGTT+TGG - chr2_2:40306012-40306031 None:intergenic 30.0%
!!! GATGTTTTGGTTCTAGAAAA+TGG - chr2_2:40306017-40306036 None:intergenic 30.0%
TAGATGAATTGTACCATCAA+AGG - chr2_2:40306094-40306113 None:intergenic 30.0%
!!! ACAAATTTTGAGAGCATTCA+AGG - chr2_2:40306188-40306207 None:intergenic 30.0%
!! AATGCTCTCAAAATTTGTTG+AGG + chr2_2:40306190-40306209 Msa0251120:CDS 30.0%
AAACTACTTGCATCACATAA+TGG + chr2_2:40306309-40306328 Msa0251120:CDS 30.0%
ATGGAATGGATCTTAATCTA+AGG + chr2_2:40306328-40306347 Msa0251120:CDS 30.0%
ACCACTTAAAACTAGCTAGT+TGG + chr2_2:40304855-40304874 Msa0251120:intron 35.0%
!!! ACCAACTAGCTAGTTTTAAG+TGG - chr2_2:40304859-40304878 None:intergenic 35.0%
GCGCATAAGTAAGATATGAT+TGG - chr2_2:40305040-40305059 None:intergenic 35.0%
! ACAAAACTATTTTACACCGG+CGG + chr2_2:40305135-40305154 Msa0251120:intron 35.0%
CTTAAGATTGAAGACATGTC+TGG - chr2_2:40305347-40305366 None:intergenic 35.0%
ATAAGTGTAGGATTGGATCA+GGG + chr2_2:40305472-40305491 Msa0251120:CDS 35.0%
AAGAAATACCACTCATTCTG+TGG - chr2_2:40305498-40305517 None:intergenic 35.0%
CTATTTGTTCTTGTTCCTGT+TGG - chr2_2:40305543-40305562 None:intergenic 35.0%
!!! CATTCCAATCCTTTTGGAAT+TGG - chr2_2:40305622-40305641 None:intergenic 35.0%
ATTCCAAAAGGATTGGAATG+AGG + chr2_2:40305622-40305641 Msa0251120:CDS 35.0%
! TTTCCTCATTCCAATCCTTT+TGG - chr2_2:40305628-40305647 None:intergenic 35.0%
! AAAACCTTAGTCTTCTACAC+TGG + chr2_2:40305645-40305664 Msa0251120:CDS 35.0%
! TGATGATAATGCAGAAGTTC+AGG + chr2_2:40305725-40305744 Msa0251120:CDS 35.0%
!!! TTGTTTTTCAGGAAGATGGA+TGG + chr2_2:40305881-40305900 Msa0251120:intron 35.0%
!!! TGTTTTTCAGGAAGATGGAT+GGG + chr2_2:40305882-40305901 Msa0251120:intron 35.0%
AACCACATGAGATCAACAAA+TGG + chr2_2:40305985-40306004 Msa0251120:CDS 35.0%
ATGAATTGTACCATCAAAGG+TGG - chr2_2:40306091-40306110 None:intergenic 35.0%
TTCCTTCCATAACTCATCAA+TGG + chr2_2:40306158-40306177 Msa0251120:CDS 35.0%
ACAACAACAAATACTAGCTC+AGG + chr2_2:40306216-40306235 Msa0251120:CDS 35.0%
! ACTTGCATCACATAATGGAA+TGG + chr2_2:40306314-40306333 Msa0251120:CDS 35.0%
TAACACTCCTAATAATCACC+AGG + chr2_2:40306362-40306381 Msa0251120:CDS 35.0%
TCACAACCAAGGTAATGAAA+TGG - chr2_2:40306432-40306451 None:intergenic 35.0%
ACCACTTAAAACTAGCTAGT+TGG + chr2_2:40304855-40304874 Msa0251120:intron 35.0%
!!! ACCAACTAGCTAGTTTTAAG+TGG - chr2_2:40304859-40304878 None:intergenic 35.0%
GCGCATAAGTAAGATATGAT+TGG - chr2_2:40305040-40305059 None:intergenic 35.0%
! ACAAAACTATTTTACACCGG+CGG + chr2_2:40305135-40305154 Msa0251120:intron 35.0%
CTTAAGATTGAAGACATGTC+TGG - chr2_2:40305347-40305366 None:intergenic 35.0%
ATAAGTGTAGGATTGGATCA+GGG + chr2_2:40305472-40305491 Msa0251120:CDS 35.0%
AAGAAATACCACTCATTCTG+TGG - chr2_2:40305498-40305517 None:intergenic 35.0%
CTATTTGTTCTTGTTCCTGT+TGG - chr2_2:40305543-40305562 None:intergenic 35.0%
!!! CATTCCAATCCTTTTGGAAT+TGG - chr2_2:40305622-40305641 None:intergenic 35.0%
ATTCCAAAAGGATTGGAATG+AGG + chr2_2:40305622-40305641 Msa0251120:CDS 35.0%
! TTTCCTCATTCCAATCCTTT+TGG - chr2_2:40305628-40305647 None:intergenic 35.0%
! AAAACCTTAGTCTTCTACAC+TGG + chr2_2:40305645-40305664 Msa0251120:CDS 35.0%
! TGATGATAATGCAGAAGTTC+AGG + chr2_2:40305725-40305744 Msa0251120:CDS 35.0%
!!! TTGTTTTTCAGGAAGATGGA+TGG + chr2_2:40305881-40305900 Msa0251120:intron 35.0%
!!! TGTTTTTCAGGAAGATGGAT+GGG + chr2_2:40305882-40305901 Msa0251120:intron 35.0%
AACCACATGAGATCAACAAA+TGG + chr2_2:40305985-40306004 Msa0251120:CDS 35.0%
ATGAATTGTACCATCAAAGG+TGG - chr2_2:40306091-40306110 None:intergenic 35.0%
TTCCTTCCATAACTCATCAA+TGG + chr2_2:40306158-40306177 Msa0251120:CDS 35.0%
ACAACAACAAATACTAGCTC+AGG + chr2_2:40306216-40306235 Msa0251120:CDS 35.0%
! ACTTGCATCACATAATGGAA+TGG + chr2_2:40306314-40306333 Msa0251120:CDS 35.0%
TAACACTCCTAATAATCACC+AGG + chr2_2:40306362-40306381 Msa0251120:CDS 35.0%
TCACAACCAAGGTAATGAAA+TGG - chr2_2:40306432-40306451 None:intergenic 35.0%
GAGAATTAACAGTTCCTCCA+GGG + chr2_2:40304640-40304659 Msa0251120:CDS 40.0%
AAAGAAGCTCCTCATCAGTT+GGG - chr2_2:40304677-40304696 None:intergenic 40.0%
TAAAGAAGCTCCTCATCAGT+TGG - chr2_2:40304678-40304697 None:intergenic 40.0%
! TATTAATGGATATGCACCGC+CGG - chr2_2:40305154-40305173 None:intergenic 40.0%
AACACTTGCACTAGTAACAC+CGG + chr2_2:40305229-40305248 Msa0251120:intron 40.0%
TTGCGGATATCAACGTATCA+GGG - chr2_2:40305260-40305279 None:intergenic 40.0%
ATTGCGGATATCAACGTATC+AGG - chr2_2:40305261-40305280 None:intergenic 40.0%
! CACTTGTTGCAGATAAGTGT+AGG + chr2_2:40305460-40305479 Msa0251120:intron 40.0%
GTTGCAGATAAGTGTAGGAT+TGG + chr2_2:40305465-40305484 Msa0251120:intron 40.0%
GATAAGTGTAGGATTGGATC+AGG + chr2_2:40305471-40305490 Msa0251120:intron 40.0%
GTGGTATTTCTTCAGTCACA+AGG + chr2_2:40305506-40305525 Msa0251120:CDS 40.0%
AAGGACAAGAAATACCCAAC+AGG + chr2_2:40305525-40305544 Msa0251120:CDS 40.0%
ACAAATAGAGCAACTACAGC+TGG + chr2_2:40305555-40305574 Msa0251120:CDS 40.0%
CAAATAGAGCAACTACAGCT+GGG + chr2_2:40305556-40305575 Msa0251120:CDS 40.0%
CACACCAATTCCAAAAGGAT+TGG + chr2_2:40305615-40305634 Msa0251120:CDS 40.0%
!! CAATCAGTTTTGTGACCATG+AGG - chr2_2:40305678-40305697 None:intergenic 40.0%
CTCATGGTCACAAAACTGAT+TGG + chr2_2:40305676-40305695 Msa0251120:CDS 40.0%
! GACCATTTGTTGATCTCATG+TGG - chr2_2:40305990-40306009 None:intergenic 40.0%
!! TGCATGTGGTGATGATGTTT+TGG - chr2_2:40306030-40306049 None:intergenic 40.0%
ATAGTCCTAGTTGTTGCATG+TGG - chr2_2:40306044-40306063 None:intergenic 40.0%
AATTGTACCATCAAAGGTGG+TGG - chr2_2:40306088-40306107 None:intergenic 40.0%
GATTCTGGACTGAACAATTG+TGG - chr2_2:40306117-40306136 None:intergenic 40.0%
GATGAGTTATGGAAGGAAGT+TGG - chr2_2:40306156-40306175 None:intergenic 40.0%
GTCCATTGATGAGTTATGGA+AGG - chr2_2:40306163-40306182 None:intergenic 40.0%
GGATGTCCATTGATGAGTTA+TGG - chr2_2:40306167-40306186 None:intergenic 40.0%
AGCAACAACAACAAGGAGAA+AGG + chr2_2:40306253-40306272 Msa0251120:CDS 40.0%
TATCATGAGACTCACAACCA+AGG - chr2_2:40306443-40306462 None:intergenic 40.0%
GAGAATTAACAGTTCCTCCA+GGG + chr2_2:40304640-40304659 Msa0251120:CDS 40.0%
AAAGAAGCTCCTCATCAGTT+GGG - chr2_2:40304677-40304696 None:intergenic 40.0%
TAAAGAAGCTCCTCATCAGT+TGG - chr2_2:40304678-40304697 None:intergenic 40.0%
! TATTAATGGATATGCACCGC+CGG - chr2_2:40305154-40305173 None:intergenic 40.0%
AACACTTGCACTAGTAACAC+CGG + chr2_2:40305229-40305248 Msa0251120:intron 40.0%
TTGCGGATATCAACGTATCA+GGG - chr2_2:40305260-40305279 None:intergenic 40.0%
ATTGCGGATATCAACGTATC+AGG - chr2_2:40305261-40305280 None:intergenic 40.0%
! CACTTGTTGCAGATAAGTGT+AGG + chr2_2:40305460-40305479 Msa0251120:intron 40.0%
GTTGCAGATAAGTGTAGGAT+TGG + chr2_2:40305465-40305484 Msa0251120:intron 40.0%
GATAAGTGTAGGATTGGATC+AGG + chr2_2:40305471-40305490 Msa0251120:intron 40.0%
GTGGTATTTCTTCAGTCACA+AGG + chr2_2:40305506-40305525 Msa0251120:CDS 40.0%
AAGGACAAGAAATACCCAAC+AGG + chr2_2:40305525-40305544 Msa0251120:CDS 40.0%
ACAAATAGAGCAACTACAGC+TGG + chr2_2:40305555-40305574 Msa0251120:CDS 40.0%
CAAATAGAGCAACTACAGCT+GGG + chr2_2:40305556-40305575 Msa0251120:CDS 40.0%
CACACCAATTCCAAAAGGAT+TGG + chr2_2:40305615-40305634 Msa0251120:CDS 40.0%
!! CAATCAGTTTTGTGACCATG+AGG - chr2_2:40305678-40305697 None:intergenic 40.0%
CTCATGGTCACAAAACTGAT+TGG + chr2_2:40305676-40305695 Msa0251120:CDS 40.0%
! GACCATTTGTTGATCTCATG+TGG - chr2_2:40305990-40306009 None:intergenic 40.0%
!! TGCATGTGGTGATGATGTTT+TGG - chr2_2:40306030-40306049 None:intergenic 40.0%
ATAGTCCTAGTTGTTGCATG+TGG - chr2_2:40306044-40306063 None:intergenic 40.0%
AATTGTACCATCAAAGGTGG+TGG - chr2_2:40306088-40306107 None:intergenic 40.0%
GATTCTGGACTGAACAATTG+TGG - chr2_2:40306117-40306136 None:intergenic 40.0%
GATGAGTTATGGAAGGAAGT+TGG - chr2_2:40306156-40306175 None:intergenic 40.0%
GTCCATTGATGAGTTATGGA+AGG - chr2_2:40306163-40306182 None:intergenic 40.0%
GGATGTCCATTGATGAGTTA+TGG - chr2_2:40306167-40306186 None:intergenic 40.0%
AGCAACAACAACAAGGAGAA+AGG + chr2_2:40306253-40306272 Msa0251120:CDS 40.0%
TATCATGAGACTCACAACCA+AGG - chr2_2:40306443-40306462 None:intergenic 40.0%
GGAGAATTAACAGTTCCTCC+AGG + chr2_2:40304639-40304658 Msa0251120:CDS 45.0%
TAACAGTTCCTCCAGGGTTT+AGG + chr2_2:40304646-40304665 Msa0251120:CDS 45.0%
ATCTCAACAGACTTGAGCCT+TGG + chr2_2:40304760-40304779 Msa0251120:CDS 45.0%
TCTCAACAGACTTGAGCCTT+GGG + chr2_2:40304761-40304780 Msa0251120:CDS 45.0%
!! TGTGTACCTTTGAGATCCCA+AGG - chr2_2:40304780-40304799 None:intergenic 45.0%
! TCAACGTATCAGGGTTGATC+CGG - chr2_2:40305251-40305270 None:intergenic 45.0%
!!! CACATGTGTCGGTTTTGTCT+CGG + chr2_2:40305312-40305331 Msa0251120:intron 45.0%
ACGTCCAGTGTAGAAGACTA+AGG - chr2_2:40305652-40305671 None:intergenic 45.0%
AAGATGGATGGGTAGTATGC+AGG + chr2_2:40305893-40305912 Msa0251120:CDS 45.0%
AGATGGATGGGTAGTATGCA+GGG + chr2_2:40305894-40305913 Msa0251120:CDS 45.0%
CATCACCACATGCAACAACT+AGG + chr2_2:40306036-40306055 Msa0251120:CDS 45.0%
! GGTACTGCTATAGCTGATTC+TGG - chr2_2:40306132-40306151 None:intergenic 45.0%
GAGTTATGGAAGGAAGTTGG+TGG - chr2_2:40306153-40306172 None:intergenic 45.0%
CTCATGCAGCAACAACAACA+AGG + chr2_2:40306246-40306265 Msa0251120:CDS 45.0%
! CAAGGAGAAAGGTTGATCAG+TGG + chr2_2:40306264-40306283 Msa0251120:CDS 45.0%
! TGGTGGTGATTGGTCATTCT+TGG + chr2_2:40306284-40306303 Msa0251120:CDS 45.0%
GAAGTTCCAACAGCAGTAGA+AGG - chr2_2:40306393-40306412 None:intergenic 45.0%
GGAGAATTAACAGTTCCTCC+AGG + chr2_2:40304639-40304658 Msa0251120:CDS 45.0%
TAACAGTTCCTCCAGGGTTT+AGG + chr2_2:40304646-40304665 Msa0251120:CDS 45.0%
ATCTCAACAGACTTGAGCCT+TGG + chr2_2:40304760-40304779 Msa0251120:CDS 45.0%
TCTCAACAGACTTGAGCCTT+GGG + chr2_2:40304761-40304780 Msa0251120:CDS 45.0%
!! TGTGTACCTTTGAGATCCCA+AGG - chr2_2:40304780-40304799 None:intergenic 45.0%
! TCAACGTATCAGGGTTGATC+CGG - chr2_2:40305251-40305270 None:intergenic 45.0%
!!! CACATGTGTCGGTTTTGTCT+CGG + chr2_2:40305312-40305331 Msa0251120:intron 45.0%
ACGTCCAGTGTAGAAGACTA+AGG - chr2_2:40305652-40305671 None:intergenic 45.0%
AAGATGGATGGGTAGTATGC+AGG + chr2_2:40305893-40305912 Msa0251120:CDS 45.0%
AGATGGATGGGTAGTATGCA+GGG + chr2_2:40305894-40305913 Msa0251120:CDS 45.0%
CATCACCACATGCAACAACT+AGG + chr2_2:40306036-40306055 Msa0251120:CDS 45.0%
! GGTACTGCTATAGCTGATTC+TGG - chr2_2:40306132-40306151 None:intergenic 45.0%
GAGTTATGGAAGGAAGTTGG+TGG - chr2_2:40306153-40306172 None:intergenic 45.0%
CTCATGCAGCAACAACAACA+AGG + chr2_2:40306246-40306265 Msa0251120:CDS 45.0%
! CAAGGAGAAAGGTTGATCAG+TGG + chr2_2:40306264-40306283 Msa0251120:CDS 45.0%
! TGGTGGTGATTGGTCATTCT+TGG + chr2_2:40306284-40306303 Msa0251120:CDS 45.0%
GAAGTTCCAACAGCAGTAGA+AGG - chr2_2:40306393-40306412 None:intergenic 45.0%
TAGGTTCCACCCAACTGATG+AGG + chr2_2:40304665-40304684 Msa0251120:CDS 50.0%
CTTGAGCCTTGGGATCTCAA+AGG + chr2_2:40304771-40304790 Msa0251120:CDS 50.0%
! GAGCAACTACAGCTGGGTTT+TGG + chr2_2:40305562-40305581 Msa0251120:CDS 50.0%
!!! GCTGGGTTTTGGAAAGCAAC+AGG + chr2_2:40305573-40305592 Msa0251120:CDS 50.0%
CATGCACTACAAGTGTGTGC+AGG - chr2_2:40305764-40305783 None:intergenic 50.0%
AACACCACCACCACCTTTGA+TGG + chr2_2:40306078-40306097 Msa0251120:CDS 50.0%
! TGTACCATCAAAGGTGGTGG+TGG - chr2_2:40306085-40306104 None:intergenic 50.0%
! GGAGAAAGGTTGATCAGTGG+TGG + chr2_2:40306267-40306286 Msa0251120:CDS 50.0%
! GGTTGATCAGTGGTGGTGAT+TGG + chr2_2:40306274-40306293 Msa0251120:CDS 50.0%
GGTGCAGCCTGGTGATTATT+AGG - chr2_2:40306372-40306391 None:intergenic 50.0%
TAGGTTCCACCCAACTGATG+AGG + chr2_2:40304665-40304684 Msa0251120:CDS 50.0%
CTTGAGCCTTGGGATCTCAA+AGG + chr2_2:40304771-40304790 Msa0251120:CDS 50.0%
! GAGCAACTACAGCTGGGTTT+TGG + chr2_2:40305562-40305581 Msa0251120:CDS 50.0%
!!! GCTGGGTTTTGGAAAGCAAC+AGG + chr2_2:40305573-40305592 Msa0251120:CDS 50.0%
CATGCACTACAAGTGTGTGC+AGG - chr2_2:40305764-40305783 None:intergenic 50.0%
AACACCACCACCACCTTTGA+TGG + chr2_2:40306078-40306097 Msa0251120:CDS 50.0%
! TGTACCATCAAAGGTGGTGG+TGG - chr2_2:40306085-40306104 None:intergenic 50.0%
! GGAGAAAGGTTGATCAGTGG+TGG + chr2_2:40306267-40306286 Msa0251120:CDS 50.0%
! GGTTGATCAGTGGTGGTGAT+TGG + chr2_2:40306274-40306293 Msa0251120:CDS 50.0%
GGTGCAGCCTGGTGATTATT+AGG - chr2_2:40306372-40306391 None:intergenic 50.0%
GTTGGGTGGAACCTAAACCC+TGG - chr2_2:40304660-40304679 None:intergenic 55.0%
GAAGCTCCTCATCAGTTGGG+TGG - chr2_2:40304674-40304693 None:intergenic 55.0%
!!! TGTCGGTTTTGTCTCGGCGT+CGG + chr2_2:40305318-40305337 Msa0251120:intron 55.0%
GATCAGGGCCACAGAATGAG+TGG + chr2_2:40305487-40305506 Msa0251120:CDS 55.0%
TACACTGGACGTGCTCCTCA+TGG + chr2_2:40305660-40305679 Msa0251120:CDS 55.0%
GCTGCACCTTCTACTGCTGT+TGG + chr2_2:40306384-40306403 Msa0251120:CDS 55.0%
GTTGGGTGGAACCTAAACCC+TGG - chr2_2:40304660-40304679 None:intergenic 55.0%
GAAGCTCCTCATCAGTTGGG+TGG - chr2_2:40304674-40304693 None:intergenic 55.0%
!!! TGTCGGTTTTGTCTCGGCGT+CGG + chr2_2:40305318-40305337 Msa0251120:intron 55.0%
GATCAGGGCCACAGAATGAG+TGG + chr2_2:40305487-40305506 Msa0251120:CDS 55.0%
TACACTGGACGTGCTCCTCA+TGG + chr2_2:40305660-40305679 Msa0251120:CDS 55.0%
GCTGCACCTTCTACTGCTGT+TGG + chr2_2:40306384-40306403 Msa0251120:CDS 55.0%
GGGTGGAACCTAAACCCTGG+AGG - chr2_2:40304657-40304676 None:intergenic 60.0%
! CAGCAGTAGAAGGTGCAGCC+TGG - chr2_2:40306383-40306402 None:intergenic 60.0%
GGGTGGAACCTAAACCCTGG+AGG - chr2_2:40304657-40304676 None:intergenic 60.0%
! CAGCAGTAGAAGGTGCAGCC+TGG - chr2_2:40306383-40306402 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 40304624 40306482 40304624 ID=Msa0251120;Name=Msa0251120
chr2_2 mRNA 40304624 40306482 40304624 ID=Msa0251120-mRNA-1;Parent=Msa0251120;Name=Msa0251120-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|344
chr2_2 exon 40304624 40304792 40304624 ID=Msa0251120-mRNA-1:exon:12565;Parent=Msa0251120-mRNA-1
chr2_2 exon 40305472 40305746 40305472 ID=Msa0251120-mRNA-1:exon:12566;Parent=Msa0251120-mRNA-1
chr2_2 exon 40305892 40306482 40305892 ID=Msa0251120-mRNA-1:exon:12567;Parent=Msa0251120-mRNA-1
chr2_2 CDS 40304624 40304792 40304624 ID=Msa0251120-mRNA-1:cds;Parent=Msa0251120-mRNA-1
chr2_2 CDS 40305472 40305746 40305472 ID=Msa0251120-mRNA-1:cds;Parent=Msa0251120-mRNA-1
chr2_2 CDS 40305892 40306482 40305892 ID=Msa0251120-mRNA-1:cds;Parent=Msa0251120-mRNA-1
Gene Sequence

>Msa0251120

ATGATGCAAGGTAGTGGAGAATTAACAGTTCCTCCAGGGTTTAGGTTCCACCCAACTGATGAGGAGCTTCTTTACTATTACTTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATCAGAGAAGTTGATCTCAACAGACTTGAGCCTTGGGATCTCAAAGATAAGTGTAGGATTGGATCAGGGCCACAGAATGAGTGGTATTTCTTCAGTCACAAGGACAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACAGGAAGAGACAAAGCCATATATCACACCAATTCCAAAAGGATTGGAATGAGGAAAACCTTAGTCTTCTACACTGGACGTGCTCCTCATGGTCACAAAACTGATTGGATTATGCATGAGTACCGTCTTGATGATGATGATAATGCAGAAGTTCAGGAAGATGGATGGGTAGTATGCAGGGTATTCAAAAAGAAAAACACAAACAGAAGCTACCAACAAGAAATTGAAGAAGAAGATCATCACATGATTAACCACATGAGATCAACAAATGGTCCAAACCATTTTCTAGAACCAAAACATCATCACCACATGCAACAACTAGGACTATATGATTACAACAATAACACCACCACCACCTTTGATGGTACAATTCATCTACCACAATTGTTCAGTCCAGAATCAGCTATAGCAGTACCACCAACTTCCTTCCATAACTCATCAATGGACATCCTTGAATGCTCTCAAAATTTGTTGAGGCTCACAACAACAAATACTAGCTCAGGACATAATCTCATGCAGCAACAACAACAAGGAGAAAGGTTGATCAGTGGTGGTGATTGGTCATTCTTGGATAAACTACTTGCATCACATAATGGAATGGATCTTAATCTAAGGAACAAATTATGTAACACTCCTAATAATCACCAGGCTGCACCTTCTACTGCTGTTGGAACTTCTTCAGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGTCTCATGATATTATGAAATTTTCAAAGTAA

Protein sequence

>Msa0251120

MMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDNAEVQEDGWVVCRVFKKKNTNRSYQQEIEEEDHHMINHMRSTNGPNHFLEPKHHHHMQQLGLYDYNNNTTTTFDGTIHLPQLFSPESAIAVPPTSFHNSSMDILECSQNLLRLTTTNTSSGHNLMQQQQQGERLISGGDWSFLDKLLASHNGMDLNLRNKLCNTPNNHQAAPSTAVGTSSAQKFPFHYLGCESHDIMKFSK*