Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177100 | XP_013444640.2 | 84.776 | 335 | 28 | 3 | 1 | 328 | 1 | 319 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177100 | sp|Q9M365|FB331_ARATH | 55.161 | 310 | 116 | 4 | 26 | 328 | 66 | 359 | 1.05e-118 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0792290 | Msa1177100 | 0.818299 | 2.107066e-52 | -8.615850e-47 |
| Msa0833300 | Msa1177100 | 0.801373 | 9.283152e-49 | -8.615850e-47 |
| Msa1077460 | Msa1177100 | 0.809705 | 1.658037e-50 | -8.615850e-47 |
| Msa1096580 | Msa1177100 | 0.801627 | 8.233762e-49 | -8.615850e-47 |
| Msa1100980 | Msa1177100 | 0.804781 | 1.832217e-49 | -8.615850e-47 |
| Msa1135740 | Msa1177100 | 0.806326 | 8.684523e-50 | -8.615850e-47 |
| Msa1164120 | Msa1177100 | 0.809106 | 2.229214e-50 | -8.615850e-47 |
| Msa1177100 | Msa1177130 | 0.821231 | 4.506903e-53 | -8.615850e-47 |
| Msa1177100 | Msa1177160 | 0.821218 | 4.538816e-53 | -8.615850e-47 |
| Msa1177100 | Msa1246880 | 0.802538 | 5.350114e-49 | -8.615850e-47 |
| Msa1177100 | Msa1316930 | 0.834375 | 3.108043e-56 | -8.615850e-47 |
| Msa1177100 | Msa1316950 | 0.930655 | 1.193915e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177100 | MtrunA17_Chr8g0347091 | 88.356 | 292 | 27 | 2 | 1 | 285 | 1 | 292 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1177100 | AT3G61730.1 | 55.161 | 310 | 116 | 4 | 26 | 328 | 66 | 359 | 1.07e-119 | 349 |
| Msa1177100 | AT5G36000.1 | 53.226 | 310 | 122 | 4 | 26 | 328 | 62 | 355 | 8.06e-114 | 334 |
| Msa1177100 | AT3G62500.1 | 50.676 | 148 | 50 | 4 | 144 | 289 | 198 | 324 | 5.49e-36 | 134 |
| Msa1177100 | AT3G62500.2 | 50.676 | 148 | 50 | 4 | 144 | 289 | 198 | 324 | 7.31e-36 | 134 |
Find 89 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCACGGTTGTTGCTTTC+TGG | 0.121172 | 8_1:-9426394 | Msa1177100:CDS |
| GACTGAGATAGCGAAGTTTC+TGG | 0.200830 | 8_1:-9427312 | Msa1177100:CDS |
| CTCTGTGAAGACTACGAAAA+TGG | 0.226003 | 8_1:-9425998 | Msa1177100:CDS |
| CTATCATGGATGATGCTATT+TGG | 0.269492 | 8_1:-9427238 | Msa1177100:CDS |
| AAGCTCTACACTTCCGCTTT+TGG | 0.291046 | 8_1:-9427152 | Msa1177100:intron |
| AGTACCAGCAATCCAGATTC+CGG | 0.359409 | 8_1:+9426359 | None:intergenic |
| AAAGGTTCGATGACGACATT+TGG | 0.372412 | 8_1:-9427334 | Msa1177100:intron |
| ACAACATTAAACCCGGAATC+TGG | 0.391705 | 8_1:-9426371 | Msa1177100:CDS |
| ATGAAAAGCAATCATGGCCT+TGG | 0.410729 | 8_1:+9425337 | None:intergenic |
| TTTGATTACAAGTCTTGGAT+TGG | 0.411304 | 8_1:-9425380 | Msa1177100:CDS |
| TTCTTCTTTCTTTAACTCCC+CGG | 0.412528 | 8_1:+9426437 | None:intergenic |
| GTACCAGCAATCCAGATTCC+GGG | 0.416662 | 8_1:+9426360 | None:intergenic |
| CCGATCATTCCACTTTCTCA+TGG | 0.422415 | 8_1:-9428229 | Msa1177100:intron |
| GACAGAGAGACTGAATTTCC+CGG | 0.424034 | 8_1:-9426456 | Msa1177100:CDS |
| AAGACTACGAAAATGGGAAC+TGG | 0.425872 | 8_1:-9425991 | Msa1177100:CDS |
| AAACGAGCTGATGGGGCTGC+TGG | 0.436386 | 8_1:-9425935 | Msa1177100:CDS |
| ATGGTTCGGCCGTGCTATCA+TGG | 0.453543 | 8_1:-9427252 | Msa1177100:CDS |
| CGGTATTTGATTACAAGTCT+TGG | 0.460729 | 8_1:-9425385 | Msa1177100:CDS |
| CACTTGAATGCCACAGGTGG+AGG | 0.462347 | 8_1:+9427179 | None:intergenic |
| AAACCCGGAATCTGGATTGC+TGG | 0.464365 | 8_1:-9426363 | Msa1177100:intron |
| TTGATTACAAGTCTTGGATT+GGG | 0.468371 | 8_1:-9425379 | Msa1177100:CDS |
| TCTGTGAAGACTACGAAAAT+GGG | 0.468614 | 8_1:-9425997 | Msa1177100:CDS |
| CTGGCGAGTTCTTCTACATC+TGG | 0.472677 | 8_1:-9425890 | Msa1177100:intron |
| CAGGTCCTGCCCTCATAGCT+TGG | 0.480034 | 8_1:+9424551 | None:intergenic |
| GAGAGAGAACCATGAGAAAG+TGG | 0.481943 | 8_1:+9428220 | None:intergenic |
| GTTAAAGAAAGAAGAAAGCA+TGG | 0.485219 | 8_1:-9426430 | Msa1177100:CDS |
| CAAGTATTGAGGTCACAAAC+CGG | 0.486887 | 8_1:+9426216 | None:intergenic |
| CTCCTACAAGTTCCGTCAGC+AGG | 0.492280 | 8_1:-9427032 | Msa1177100:CDS |
| TCGGAGAGAAAGCGAGGACG+AGG | 0.497635 | 8_1:+9428248 | None:intergenic |
| TCTGCAGCTTGTGCGATGCC+CGG | 0.502062 | 8_1:-9426235 | Msa1177100:CDS |
| CGGAGGCAGTTCTCCGGCGT+CGG | 0.502337 | 8_1:+9428316 | None:intergenic |
| GCAGCGACAAACCGATGGTT+CGG | 0.502370 | 8_1:-9427266 | Msa1177100:CDS |
| TCTTCTTTCTTTAACTCCCC+GGG | 0.503733 | 8_1:+9426438 | None:intergenic |
| AGGAGAGTTGCAAGAGCAGA+TGG | 0.504948 | 8_1:+9428268 | None:intergenic |
| GGAAATTCAGTCTCTCTGTC+AGG | 0.506216 | 8_1:+9426459 | None:intergenic |
| TACTGCATGAAAAGCAATCA+TGG | 0.506734 | 8_1:+9425331 | None:intergenic |
| AATGCCACAGGTGGAGGAGA+TGG | 0.508135 | 8_1:+9427185 | None:intergenic |
| CCATGAGAAAGTGGAATGAT+CGG | 0.511183 | 8_1:+9428229 | None:intergenic |
| CTTCGCCGGAGGCAGTTCTC+CGG | 0.515973 | 8_1:+9428310 | None:intergenic |
| TGGAAAATCTCTGATAATGC+TGG | 0.516586 | 8_1:-9427288 | Msa1177100:CDS |
| ATGTGAAGTACCAAGCTATG+AGG | 0.516901 | 8_1:-9424561 | Msa1177100:CDS |
| AGGCAGTTCTCCGGCGTCGG+AGG | 0.518218 | 8_1:+9428319 | None:intergenic |
| GATATCAAGAAACGAGCTGA+TGG | 0.519250 | 8_1:-9425944 | Msa1177100:CDS |
| CTCCACCTGTGGCATTCAAG+TGG | 0.519260 | 8_1:-9427178 | Msa1177100:CDS |
| CTCCTGCTGACGGAACTTGT+AGG | 0.523611 | 8_1:+9427030 | None:intergenic |
| ACAGAGAGACTGAATTTCCC+GGG | 0.528448 | 8_1:-9426455 | Msa1177100:CDS |
| TTGCTCCACTTGAATGCCAC+AGG | 0.532015 | 8_1:+9427173 | None:intergenic |
| GTGGAGGAGATGGAACTTGA+AGG | 0.535718 | 8_1:+9427195 | None:intergenic |
| ACTAATTTACAAGAAAATGA+AGG | 0.538039 | 8_1:-9425299 | Msa1177100:intron |
| AATTACCATCACAAGTATTG+AGG | 0.538205 | 8_1:+9426205 | None:intergenic |
| TATAGGAACAATGCAGACAT+TGG | 0.539902 | 8_1:-9426044 | Msa1177100:intron |
| AACTGGGATTACGAGGTTGT+AGG | 0.542235 | 8_1:-9425974 | Msa1177100:CDS |
| AACGCTACTTCCTCCGACGC+CGG | 0.546509 | 8_1:-9428329 | Msa1177100:CDS |
| TGAAAAGCAATCATGGCCTT+GGG | 0.548558 | 8_1:+9425338 | None:intergenic |
| ATATCAAGAAACGAGCTGAT+GGG | 0.548821 | 8_1:-9425943 | Msa1177100:CDS |
| TTATGTCGGATTCGCTTCGC+CGG | 0.549153 | 8_1:+9428296 | None:intergenic |
| TGATAGCACGGCCGAACCAT+CGG | 0.557930 | 8_1:+9427255 | None:intergenic |
| CAATGCAGACATTGGATGCA+AGG | 0.559581 | 8_1:-9426036 | Msa1177100:CDS |
| TAGGTTCTATTTACCAAAAG+CGG | 0.563298 | 8_1:+9427139 | None:intergenic |
| CAAGCTATGAGGGCAGGACC+TGG | 0.564190 | 8_1:-9424550 | Msa1177100:CDS |
| AAGTACCAAGCTATGAGGGC+AGG | 0.567054 | 8_1:-9424556 | Msa1177100:CDS |
| CTCCACTTGAATGCCACAGG+TGG | 0.571927 | 8_1:+9427176 | None:intergenic |
| TTACAAGTCTTGGATTGGGA+AGG | 0.572360 | 8_1:-9425375 | Msa1177100:CDS |
| AGTTCCATCTCCTCCACCTG+TGG | 0.576848 | 8_1:-9427189 | Msa1177100:CDS |
| CAGATGTAGAAGAACTCGCC+AGG | 0.584311 | 8_1:+9425891 | None:intergenic |
| TGTGAAGTACCAAGCTATGA+GGG | 0.584398 | 8_1:-9424560 | Msa1177100:CDS |
| GGATTGGGAAGGATAATGAA+TGG | 0.588740 | 8_1:-9425364 | Msa1177100:CDS |
| TGTCGGATTCGCTTCGCCGG+AGG | 0.592455 | 8_1:+9428299 | None:intergenic |
| CGACGCCGGAGAACTGCCTC+CGG | 0.595956 | 8_1:-9428315 | Msa1177100:CDS |
| AAGTATTGAGGTCACAAACC+GGG | 0.600506 | 8_1:+9426217 | None:intergenic |
| TGTGACCTCAATACTTGTGA+TGG | 0.607442 | 8_1:-9426210 | Msa1177100:intron |
| AATTCAGTCTCTCTGTCAGG+AGG | 0.611158 | 8_1:+9426462 | None:intergenic |
| GAGATAGCGAAGTTTCTGGA+TGG | 0.611982 | 8_1:-9427308 | Msa1177100:CDS |
| TTTCTGGACAACATTAAACC+CGG | 0.617091 | 8_1:-9426378 | Msa1177100:CDS |
| CAATGTGCTTCTCCTGCTGA+CGG | 0.619980 | 8_1:+9427020 | None:intergenic |
| GAAACTATGTTGAAGACTCA+CGG | 0.621215 | 8_1:-9426408 | Msa1177100:CDS |
| TGCTGGCAGCGACAAACCGA+TGG | 0.623760 | 8_1:-9427271 | Msa1177100:CDS |
| GCTATGAGGGCAGGACCTGG+TGG | 0.625432 | 8_1:-9424547 | Msa1177100:CDS |
| TAGCATCATCCATGATAGCA+CGG | 0.625465 | 8_1:+9427243 | None:intergenic |
| CGTCAGCAGGAGAAGCACAT+TGG | 0.627665 | 8_1:-9427019 | Msa1177100:intron |
| TATCAAGAAACGAGCTGATG+GGG | 0.628405 | 8_1:-9425942 | Msa1177100:CDS |
| ATGGAAACAACTTCTCCACC+AGG | 0.630379 | 8_1:+9424532 | None:intergenic |
| GGATAATGAATGGCAACCCA+AGG | 0.631695 | 8_1:-9425354 | Msa1177100:CDS |
| CAGCTGCTGAGAGATTCTGA+TGG | 0.636966 | 8_1:+9424513 | None:intergenic |
| AGACTACGAAAATGGGAACT+GGG | 0.645326 | 8_1:-9425990 | Msa1177100:CDS |
| ATTCAGTCTCTCTGTCAGGA+GGG | 0.655055 | 8_1:+9426463 | None:intergenic |
| GAATGATCGGAGAGAAAGCG+AGG | 0.656826 | 8_1:+9428242 | None:intergenic |
| AAATGGGAACTGGGATTACG+AGG | 0.675337 | 8_1:-9425981 | Msa1177100:CDS |
| CAGAGAGACTGAATTTCCCG+GGG | 0.695501 | 8_1:-9426454 | Msa1177100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTATAATTTTTATATG+TGG | - | chr8_1:9425296-9425315 | Msa1177100:intron | 10.0% |
| !!! | AAAAAAAAGTATTAGAAATT+TGG | + | chr8_1:9427959-9427978 | None:intergenic | 10.0% |
| !! | TTAATTAAGTATTAGAAATT+TGG | + | chr8_1:9427991-9428010 | None:intergenic | 10.0% |
| !!! | ATTTTTAGTTCAATTTTAGA+TGG | - | chr8_1:9425004-9425023 | Msa1177100:intron | 15.0% |
| !! | TCAAATATTCAAAATCAAAT+CGG | + | chr8_1:9425089-9425108 | None:intergenic | 15.0% |
| !!! | ATTAACATTGATTTTGAAAT+TGG | - | chr8_1:9425781-9425800 | Msa1177100:intron | 15.0% |
| !!! | TCTAAATTAATGCTTTTTAT+TGG | - | chr8_1:9427364-9427383 | Msa1177100:intron | 15.0% |
| !! | CTATATAAAGAAAAAACAAT+TGG | + | chr8_1:9428219-9428238 | None:intergenic | 15.0% |
| !!! | TGATTTTATGAAGTTTTTGA+CGG | - | chr8_1:9425040-9425059 | Msa1177100:intron | 20.0% |
| !! | TATGTGGAAATGATTAATTA+AGG | - | chr8_1:9425312-9425331 | Msa1177100:CDS | 20.0% |
| !! | TTAATCTGAATGCTTAATAA+AGG | - | chr8_1:9425502-9425521 | Msa1177100:intron | 20.0% |
| !! | ATCTATATCCTAATATATTG+TGG | - | chr8_1:9425876-9425895 | Msa1177100:intron | 20.0% |
| !!! | ACAACAAATTTTAACAGTTA+TGG | - | chr8_1:9425904-9425923 | Msa1177100:CDS | 20.0% |
| !!! | TTAATGCTTTTTTATCATTG+AGG | - | chr8_1:9425959-9425978 | Msa1177100:CDS | 20.0% |
| !! | AATAATATGTTCTATCAGAT+TGG | - | chr8_1:9426331-9426350 | Msa1177100:intron | 20.0% |
| !! | CTTAAAGAAATACATTAACA+AGG | + | chr8_1:9427031-9427050 | None:intergenic | 20.0% |
| !!! | TTTTGAAATTAATTTGTTCC+TGG | + | chr8_1:9427283-9427302 | None:intergenic | 20.0% |
| !!! | ATTTTTAAATTAAATGGCAG+CGG | - | chr8_1:9427449-9427468 | Msa1177100:intron | 20.0% |
| !! | ACTAATTTACAAGAAAATGA+AGG | - | chr8_1:9427555-9427574 | Msa1177100:intron | 20.0% |
| !!! | TTTTACTGATTTGTTTGTTT+TGG | + | chr8_1:9427699-9427718 | None:intergenic | 20.0% |
| !! | AAATAGAATGGTAAACAAAT+TGG | + | chr8_1:9427858-9427877 | None:intergenic | 20.0% |
| !!! | AAATTTGGAATAGTTAGTTT+GGG | + | chr8_1:9427944-9427963 | None:intergenic | 20.0% |
| !! | GCTTGTATTGAAAAATAAAA+TGG | + | chr8_1:9428265-9428284 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTCAATACAAGC+AGG | - | chr8_1:9428265-9428284 | Msa1177100:CDS | 20.0% |
| !! | GGAAATTCAGTTTGAATTTT+CGG | - | chr8_1:9424781-9424800 | Msa1177100:intron | 25.0% |
| ! | TGCAAGAATCATTTGAAAAT+CGG | - | chr8_1:9424969-9424988 | Msa1177100:intron | 25.0% |
| !! | GATTTTATGAAGTTTTTGAC+GGG | - | chr8_1:9425041-9425060 | Msa1177100:intron | 25.0% |
| !! | TTTGAAATTGGAATTTCAGA+TGG | - | chr8_1:9425793-9425812 | Msa1177100:intron | 25.0% |
| ! | TTGAAATTGGAATTTCAGAT+GGG | - | chr8_1:9425794-9425813 | Msa1177100:intron | 25.0% |
| ! | TGTGAATTCCACAATATATT+AGG | + | chr8_1:9425887-9425906 | None:intergenic | 25.0% |
| ! | TTATGGAAATGAATTTGATG+TGG | - | chr8_1:9425921-9425940 | Msa1177100:CDS | 25.0% |
| !!! | ATAAAAAAGCATTAACTGTG+CGG | + | chr8_1:9425954-9425973 | None:intergenic | 25.0% |
| ! | CTGACAATTATATATGTACA+TGG | - | chr8_1:9426086-9426105 | Msa1177100:intron | 25.0% |
| !! | AGAATTTTGCATAAGCAATA+AGG | + | chr8_1:9426116-9426135 | None:intergenic | 25.0% |
| !! | TGAATTATTCATGGTGTTAA+GGG | + | chr8_1:9426703-9426722 | None:intergenic | 25.0% |
| !! | ATGAATTATTCATGGTGTTA+AGG | + | chr8_1:9426704-9426723 | None:intergenic | 25.0% |
| ! | AGAATAGAAACGTATATACA+TGG | - | chr8_1:9427114-9427133 | Msa1177100:intron | 25.0% |
| ! | AGAATAGAAACGTATATACA+TGG | - | chr8_1:9427114-9427133 | Msa1177100:intron | 25.0% |
| ! | TTTGTACTTATTCTTATAGC+AGG | + | chr8_1:9427640-9427659 | None:intergenic | 25.0% |
| !! | GAAATTTGGAATAGTTAGTT+TGG | + | chr8_1:9427945-9427964 | None:intergenic | 25.0% |
| ! | TGAATTAGCATGAATAATTG+TGG | + | chr8_1:9428017-9428036 | None:intergenic | 25.0% |
| ! | TACATGCTTATTTCAGTTAA+TGG | + | chr8_1:9428040-9428059 | None:intergenic | 25.0% |
| ! | ATCATCAAAGAAGAAGATTT+GGG | + | chr8_1:9428085-9428104 | None:intergenic | 25.0% |
| TAGGTTCTATTTACCAAAAG+CGG | + | chr8_1:9425718-9425737 | None:intergenic | 30.0% | |
| CAATAACTCTTGTCAATCTA+AGG | + | chr8_1:9426048-9426067 | None:intergenic | 30.0% | |
| AATTGTCAGATCTAGATTCA+GGG | + | chr8_1:9426075-9426094 | None:intergenic | 30.0% | |
| TAATTGTCAGATCTAGATTC+AGG | + | chr8_1:9426076-9426095 | None:intergenic | 30.0% | |
| TCAATGGTTGGATAAATTCT+AGG | + | chr8_1:9426207-9426226 | None:intergenic | 30.0% | |
| TATAAGAATGAACCAGTCAA+TGG | + | chr8_1:9426223-9426242 | None:intergenic | 30.0% | |
| GTTAAAGAAAGAAGAAAGCA+TGG | - | chr8_1:9426424-9426443 | Msa1177100:CDS | 30.0% | |
| AGTGATAGCTATATAGTCAA+AGG | + | chr8_1:9426530-9426549 | None:intergenic | 30.0% | |
| ! | AATTACCATCACAAGTATTG+AGG | + | chr8_1:9426652-9426671 | None:intergenic | 30.0% |
| AAGGGATATACAAAACTCAT+TGG | + | chr8_1:9426685-9426704 | None:intergenic | 30.0% | |
| AACCACTGATGAATTATTCA+TGG | + | chr8_1:9426712-9426731 | None:intergenic | 30.0% | |
| GTAATGACATGACATTAGAT+TGG | + | chr8_1:9427069-9427088 | None:intergenic | 30.0% | |
| ! | TGCTTTACTAGTTTCAGTTA+AGG | - | chr8_1:9427143-9427162 | Msa1177100:intron | 30.0% |
| ! | TGCTTTACTAGTTTCAGTTA+AGG | - | chr8_1:9427143-9427162 | Msa1177100:intron | 30.0% |
| AATGAATGTATAGATAGTCC+AGG | - | chr8_1:9427262-9427281 | Msa1177100:CDS | 30.0% | |
| TAGTAACTATCTTCTTGGAA+GGG | + | chr8_1:9427393-9427412 | None:intergenic | 30.0% | |
| TTAGTAACTATCTTCTTGGA+AGG | + | chr8_1:9427394-9427413 | None:intergenic | 30.0% | |
| GAACTTAGTAACTATCTTCT+TGG | + | chr8_1:9427398-9427417 | None:intergenic | 30.0% | |
| TTTGATTACAAGTCTTGGAT+TGG | - | chr8_1:9427474-9427493 | Msa1177100:intron | 30.0% | |
| TTGATTACAAGTCTTGGATT+GGG | - | chr8_1:9427475-9427494 | Msa1177100:intron | 30.0% | |
| TTACTTCAGTAATTGAGTCA+GGG | + | chr8_1:9427606-9427625 | None:intergenic | 30.0% | |
| TTTACTTCAGTAATTGAGTC+AGG | + | chr8_1:9427607-9427626 | None:intergenic | 30.0% | |
| !!! | GATTTGTTTGTTTTGGTAAC+TGG | + | chr8_1:9427692-9427711 | None:intergenic | 30.0% |
| GAATCAATTGTTGTAGCATA+GGG | + | chr8_1:9427726-9427745 | None:intergenic | 30.0% | |
| TGAATCAATTGTTGTAGCAT+AGG | + | chr8_1:9427727-9427746 | None:intergenic | 30.0% | |
| AATGGTAAACAAATTGGATG+GGG | + | chr8_1:9427852-9427871 | None:intergenic | 30.0% | |
| GAATGGTAAACAAATTGGAT+GGG | + | chr8_1:9427853-9427872 | None:intergenic | 30.0% | |
| AGAATGGTAAACAAATTGGA+TGG | + | chr8_1:9427854-9427873 | None:intergenic | 30.0% | |
| TGAGGTTGGAAAAAATAGAA+TGG | + | chr8_1:9427870-9427889 | None:intergenic | 30.0% | |
| !! | ATGTTATTCAGGTATTGGAA+TGG | + | chr8_1:9427913-9427932 | None:intergenic | 30.0% |
| GAGAAATGTTATTCAGGTAT+TGG | + | chr8_1:9427918-9427937 | None:intergenic | 30.0% | |
| GATCATCAAAGAAGAAGATT+TGG | + | chr8_1:9428086-9428105 | None:intergenic | 30.0% | |
| !!! | AGCAGATGGTTTTGTTATGT+CGG | + | chr8_1:9424575-9424594 | None:intergenic | 35.0% |
| TGCATTTCTAAGCTTCAGAT+CGG | - | chr8_1:9424760-9424779 | Msa1177100:intron | 35.0% | |
| ! | TGGAAAATCTCTGATAATGC+TGG | - | chr8_1:9425566-9425585 | Msa1177100:intron | 35.0% |
| CTATCATGGATGATGCTATT+TGG | - | chr8_1:9425616-9425635 | Msa1177100:intron | 35.0% | |
| GAATTTATCCAACCATTGAC+TGG | - | chr8_1:9426208-9426227 | Msa1177100:intron | 35.0% | |
| TTCTTCTTTCTTTAACTCCC+CGG | + | chr8_1:9426420-9426439 | None:intergenic | 35.0% | |
| GAAACTATGTTGAAGACTCA+CGG | - | chr8_1:9426446-9426465 | Msa1177100:CDS | 35.0% | |
| TTTCTGGACAACATTAAACC+CGG | - | chr8_1:9426476-9426495 | Msa1177100:intron | 35.0% | |
| CACCATGAATAATTCATCAG+TGG | - | chr8_1:9426707-9426726 | Msa1177100:intron | 35.0% | |
| TATTCTAATGCAAACCCTTG+CGG | + | chr8_1:9426746-9426765 | None:intergenic | 35.0% | |
| CAAGGGTTTGCATTAGAATA+AGG | - | chr8_1:9426746-9426765 | Msa1177100:intron | 35.0% | |
| TGCATTGTTCCTATATAAGC+AGG | + | chr8_1:9426805-9426824 | None:intergenic | 35.0% | |
| TATAGGAACAATGCAGACAT+TGG | - | chr8_1:9426810-9426829 | Msa1177100:intron | 35.0% | |
| TCTGTGAAGACTACGAAAAT+GGG | - | chr8_1:9426857-9426876 | Msa1177100:intron | 35.0% | |
| ATATCAAGAAACGAGCTGAT+GGG | - | chr8_1:9426911-9426930 | Msa1177100:intron | 35.0% | |
| CAGGTGTTTGACATCAAAAA+TGG | + | chr8_1:9426947-9426966 | None:intergenic | 35.0% | |
| ! | CATTTTTGATGTCAAACACC+TGG | - | chr8_1:9426945-9426964 | Msa1177100:intron | 35.0% |
| ATGACATGACATTAGATTGG+TGG | + | chr8_1:9427066-9427085 | None:intergenic | 35.0% | |
| TTCCGAATGATTCTTGGTTT+AGG | - | chr8_1:9427315-9427334 | Msa1177100:CDS | 35.0% | |
| TCCGAATGATTCTTGGTTTA+GGG | - | chr8_1:9427316-9427335 | Msa1177100:CDS | 35.0% | |
| TCCCTAAACCAAGAATCATT+CGG | + | chr8_1:9427320-9427339 | None:intergenic | 35.0% | |
| CGGTATTTGATTACAAGTCT+TGG | - | chr8_1:9427469-9427488 | Msa1177100:intron | 35.0% | |
| TACTGCATGAAAAGCAATCA+TGG | + | chr8_1:9427526-9427545 | None:intergenic | 35.0% | |
| AGATCCTTCATCTGTTATTG+TGG | - | chr8_1:9427807-9427826 | Msa1177100:intron | 35.0% | |
| AGAACCACAATAACAGATGA+AGG | + | chr8_1:9427814-9427833 | None:intergenic | 35.0% | |
| ! | TTATTGTGGTTCTGCAAAGT+CGG | - | chr8_1:9427821-9427840 | Msa1177100:intron | 35.0% |
| GGGAAAGAGAAATGTTATTC+AGG | + | chr8_1:9427924-9427943 | None:intergenic | 35.0% | |
| CCATGAGAAAGTGGAATGAT+CGG | + | chr8_1:9424628-9424647 | None:intergenic | 40.0% | |
| AAAGGTTCGATGACGACATT+TGG | - | chr8_1:9425520-9425539 | Msa1177100:intron | 40.0% | |
| TAGCATCATCCATGATAGCA+CGG | + | chr8_1:9425614-9425633 | None:intergenic | 40.0% | |
| AGAATGAACCAGTCAATGGT+TGG | + | chr8_1:9426219-9426238 | None:intergenic | 40.0% | |
| TCTTCTTTCTTTAACTCCCC+GGG | + | chr8_1:9426419-9426438 | None:intergenic | 40.0% | |
| ACAACATTAAACCCGGAATC+TGG | - | chr8_1:9426483-9426502 | Msa1177100:intron | 40.0% | |
| !! | AAGTATTGAGGTCACAAACC+GGG | + | chr8_1:9426640-9426659 | None:intergenic | 40.0% |
| !! | CAAGTATTGAGGTCACAAAC+CGG | + | chr8_1:9426641-9426660 | None:intergenic | 40.0% |
| TGTGACCTCAATACTTGTGA+TGG | - | chr8_1:9426644-9426663 | Msa1177100:intron | 40.0% | |
| ! | GTTACTGTTTTGTACCGCAA+GGG | - | chr8_1:9426729-9426748 | Msa1177100:intron | 40.0% |
| CACGTTTCTCCTGCTTATAT+AGG | - | chr8_1:9426793-9426812 | Msa1177100:intron | 40.0% | |
| ! | CATTTTCGTAGTCTTCACAG+AGG | + | chr8_1:9426858-9426877 | None:intergenic | 40.0% |
| CTCTGTGAAGACTACGAAAA+TGG | - | chr8_1:9426856-9426875 | Msa1177100:intron | 40.0% | |
| AAGACTACGAAAATGGGAAC+TGG | - | chr8_1:9426863-9426882 | Msa1177100:intron | 40.0% | |
| AGACTACGAAAATGGGAACT+GGG | - | chr8_1:9426864-9426883 | Msa1177100:intron | 40.0% | |
| GATATCAAGAAACGAGCTGA+TGG | - | chr8_1:9426910-9426929 | Msa1177100:intron | 40.0% | |
| TATCAAGAAACGAGCTGATG+GGG | - | chr8_1:9426912-9426931 | Msa1177100:intron | 40.0% | |
| TGAAGCTTCCGAATGATTCT+TGG | - | chr8_1:9427309-9427328 | Msa1177100:CDS | 40.0% | |
| ! | TTACAAGTCTTGGATTGGGA+AGG | - | chr8_1:9427479-9427498 | Msa1177100:intron | 40.0% |
| GGATTGGGAAGGATAATGAA+TGG | - | chr8_1:9427490-9427509 | Msa1177100:intron | 40.0% | |
| TGAAAAGCAATCATGGCCTT+GGG | + | chr8_1:9427519-9427538 | None:intergenic | 40.0% | |
| ATGAAAAGCAATCATGGCCT+TGG | + | chr8_1:9427520-9427539 | None:intergenic | 40.0% | |
| ACAAATCTGATGACAGCAAG+AGG | - | chr8_1:9427655-9427674 | Msa1177100:intron | 40.0% | |
| AGTTGGACATCAATTGAGGT+TGG | + | chr8_1:9427884-9427903 | None:intergenic | 40.0% | |
| TATTGGAATGGAAGCGAAGT+TGG | + | chr8_1:9427901-9427920 | None:intergenic | 40.0% | |
| ! | GATTTGGGACTGTAGTAGAT+TGG | + | chr8_1:9428070-9428089 | None:intergenic | 40.0% |
| ! | ATGTGAAGTACCAAGCTATG+AGG | - | chr8_1:9428293-9428312 | Msa1177100:CDS | 40.0% |
| ! | TGTGAAGTACCAAGCTATGA+GGG | - | chr8_1:9428294-9428313 | Msa1177100:CDS | 40.0% |
| CCGATCATTCCACTTTCTCA+TGG | - | chr8_1:9424625-9424644 | Msa1177100:intron | 45.0% | |
| GAGAGAGAACCATGAGAAAG+TGG | + | chr8_1:9424637-9424656 | None:intergenic | 45.0% | |
| GACTGAGATAGCGAAGTTTC+TGG | - | chr8_1:9425542-9425561 | Msa1177100:intron | 45.0% | |
| ! | GAGATAGCGAAGTTTCTGGA+TGG | - | chr8_1:9425546-9425565 | Msa1177100:intron | 45.0% |
| ! | AAGCTCTACACTTCCGCTTT+TGG | - | chr8_1:9425702-9425721 | Msa1177100:intron | 45.0% |
| ! | GAACATCGATGAAAGCGTGT+AGG | + | chr8_1:9425737-9425756 | None:intergenic | 45.0% |
| CTATCAGATTGGATGCGCAT+TGG | - | chr8_1:9426342-9426361 | Msa1177100:intron | 45.0% | |
| GAGGGCTACTGAAGATTCAA+AGG | + | chr8_1:9426376-9426395 | None:intergenic | 45.0% | |
| ATTCAGTCTCTCTGTCAGGA+GGG | + | chr8_1:9426394-9426413 | None:intergenic | 45.0% | |
| AATTCAGTCTCTCTGTCAGG+AGG | + | chr8_1:9426395-9426414 | None:intergenic | 45.0% | |
| GGAAATTCAGTCTCTCTGTC+AGG | + | chr8_1:9426398-9426417 | None:intergenic | 45.0% | |
| GACAGAGAGACTGAATTTCC+CGG | - | chr8_1:9426398-9426417 | Msa1177100:CDS | 45.0% | |
| ACAGAGAGACTGAATTTCCC+GGG | - | chr8_1:9426399-9426418 | Msa1177100:CDS | 45.0% | |
| AGTACCAGCAATCCAGATTC+CGG | + | chr8_1:9426498-9426517 | None:intergenic | 45.0% | |
| ! | GGTTACTGTTTTGTACCGCA+AGG | - | chr8_1:9426728-9426747 | Msa1177100:intron | 45.0% |
| CAATGCAGACATTGGATGCA+AGG | - | chr8_1:9426818-9426837 | Msa1177100:intron | 45.0% | |
| AAATGGGAACTGGGATTACG+AGG | - | chr8_1:9426873-9426892 | Msa1177100:intron | 45.0% | |
| AACTGGGATTACGAGGTTGT+AGG | - | chr8_1:9426880-9426899 | Msa1177100:intron | 45.0% | |
| GTCAACTTACCAACAGTCAG+TGG | - | chr8_1:9427005-9427024 | Msa1177100:intron | 45.0% | |
| ! | TTAACAAGGCCACTGACTGT+TGG | + | chr8_1:9427017-9427036 | None:intergenic | 45.0% |
| GGATAATGAATGGCAACCCA+AGG | - | chr8_1:9427500-9427519 | Msa1177100:intron | 45.0% | |
| TTGAGTCAGGGACATGAAAG+CGG | + | chr8_1:9427594-9427613 | None:intergenic | 45.0% | |
| TTACACACACTGGAGGCAAA+GGG | + | chr8_1:9427776-9427795 | None:intergenic | 45.0% | |
| CTTCTTGTTACACACACTGG+AGG | + | chr8_1:9427783-9427802 | None:intergenic | 45.0% | |
| CTCCAGTGTGTGTAACAAGA+AGG | - | chr8_1:9427781-9427800 | Msa1177100:intron | 45.0% | |
| GTCCTTCTTGTTACACACAC+TGG | + | chr8_1:9427786-9427805 | None:intergenic | 45.0% | |
| GCGAAGTTGGACATCAATTG+AGG | + | chr8_1:9427888-9427907 | None:intergenic | 45.0% | |
| TTGGGACTGTAGTAGATTGG+TGG | + | chr8_1:9428067-9428086 | None:intergenic | 45.0% | |
| ATGGAAACAACTTCTCCACC+AGG | + | chr8_1:9428325-9428344 | None:intergenic | 45.0% | |
| !!! | GTTTTAATTTTTAAATTAAA+TGG | - | chr8_1:9427443-9427462 | Msa1177100:intron | 5.0% |
| TTATGTCGGATTCGCTTCGC+CGG | + | chr8_1:9424561-9424580 | None:intergenic | 50.0% | |
| AGGAGAGTTGCAAGAGCAGA+TGG | + | chr8_1:9424589-9424608 | None:intergenic | 50.0% | |
| GAATGATCGGAGAGAAAGCG+AGG | + | chr8_1:9424615-9424634 | None:intergenic | 50.0% | |
| GTGGAGGAGATGGAACTTGA+AGG | + | chr8_1:9425662-9425681 | None:intergenic | 50.0% | |
| TTGCTCCACTTGAATGCCAC+AGG | + | chr8_1:9425684-9425703 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCCTGCTGA+CGG | + | chr8_1:9425837-9425856 | None:intergenic | 50.0% | |
| CAGAGAGACTGAATTTCCCG+GGG | - | chr8_1:9426400-9426419 | Msa1177100:CDS | 50.0% | |
| !! | GACTCACGGTTGTTGCTTTC+TGG | - | chr8_1:9426460-9426479 | Msa1177100:CDS | 50.0% |
| AAACCCGGAATCTGGATTGC+TGG | - | chr8_1:9426491-9426510 | Msa1177100:intron | 50.0% | |
| GTACCAGCAATCCAGATTCC+GGG | + | chr8_1:9426497-9426516 | None:intergenic | 50.0% | |
| TCTGGATTGCTGGTACTCTC+TGG | - | chr8_1:9426501-9426520 | Msa1177100:intron | 50.0% | |
| CAGATGTAGAAGAACTCGCC+AGG | + | chr8_1:9426966-9426985 | None:intergenic | 50.0% | |
| CTGGCGAGTTCTTCTACATC+TGG | - | chr8_1:9426964-9426983 | Msa1177100:intron | 50.0% | |
| GTTACACACACTGGAGGCAA+AGG | + | chr8_1:9427777-9427796 | None:intergenic | 50.0% | |
| AAGTACCAAGCTATGAGGGC+AGG | - | chr8_1:9428298-9428317 | Msa1177100:CDS | 50.0% | |
| CAGCTGCTGAGAGATTCTGA+TGG | + | chr8_1:9428344-9428363 | None:intergenic | 50.0% | |
| GCAGCGACAAACCGATGGTT+CGG | - | chr8_1:9425588-9425607 | Msa1177100:intron | 55.0% | |
| TGATAGCACGGCCGAACCAT+CGG | + | chr8_1:9425602-9425621 | None:intergenic | 55.0% | |
| ! | ATGGTTCGGCCGTGCTATCA+TGG | - | chr8_1:9425602-9425621 | Msa1177100:intron | 55.0% |
| AGTTCCATCTCCTCCACCTG+TGG | - | chr8_1:9425665-9425684 | Msa1177100:intron | 55.0% | |
| AATGCCACAGGTGGAGGAGA+TGG | + | chr8_1:9425672-9425691 | None:intergenic | 55.0% | |
| CACTTGAATGCCACAGGTGG+AGG | + | chr8_1:9425678-9425697 | None:intergenic | 55.0% | |
| CTCCACCTGTGGCATTCAAG+TGG | - | chr8_1:9425676-9425695 | Msa1177100:intron | 55.0% | |
| CTCCACTTGAATGCCACAGG+TGG | + | chr8_1:9425681-9425700 | None:intergenic | 55.0% | |
| CTCCTACAAGTTCCGTCAGC+AGG | - | chr8_1:9425822-9425841 | Msa1177100:intron | 55.0% | |
| CTCCTGCTGACGGAACTTGT+AGG | + | chr8_1:9425827-9425846 | None:intergenic | 55.0% | |
| ! | CGTCAGCAGGAGAAGCACAT+TGG | - | chr8_1:9425835-9425854 | Msa1177100:intron | 55.0% |
| AACGCTACTTCCTCCGACGC+CGG | - | chr8_1:9424525-9424544 | Msa1177100:CDS | 60.0% | |
| TCGGAGAGAAAGCGAGGACG+AGG | + | chr8_1:9424609-9424628 | None:intergenic | 60.0% | |
| TGCTGGCAGCGACAAACCGA+TGG | - | chr8_1:9425583-9425602 | Msa1177100:intron | 60.0% | |
| TCTGCAGCTTGTGCGATGCC+CGG | - | chr8_1:9426619-9426638 | Msa1177100:intron | 60.0% | |
| AAACGAGCTGATGGGGCTGC+TGG | - | chr8_1:9426919-9426938 | Msa1177100:intron | 60.0% | |
| CAGGTCCTGCCCTCATAGCT+TGG | + | chr8_1:9428306-9428325 | None:intergenic | 60.0% | |
| CAAGCTATGAGGGCAGGACC+TGG | - | chr8_1:9428304-9428323 | Msa1177100:CDS | 60.0% | |
| CTTCGCCGGAGGCAGTTCTC+CGG | + | chr8_1:9424547-9424566 | None:intergenic | 65.0% | |
| TGTCGGATTCGCTTCGCCGG+AGG | + | chr8_1:9424558-9424577 | None:intergenic | 65.0% | |
| GCTATGAGGGCAGGACCTGG+TGG | - | chr8_1:9428307-9428326 | Msa1177100:CDS | 65.0% | |
| ! | AGGCAGTTCTCCGGCGTCGG+AGG | + | chr8_1:9424538-9424557 | None:intergenic | 70.0% |
| CGGAGGCAGTTCTCCGGCGT+CGG | + | chr8_1:9424541-9424560 | None:intergenic | 70.0% | |
| CGACGCCGGAGAACTGCCTC+CGG | - | chr8_1:9424539-9424558 | Msa1177100:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 9424507 | 9428369 | 9424507 | ID=Msa1177100;Name=Msa1177100 |
| chr8_1 | mRNA | 9424507 | 9428369 | 9424507 | ID=Msa1177100-mRNA-1;Parent=Msa1177100;Name=Msa1177100-mRNA-1;_AED=0.17;_eAED=0.18;_QI=0|0|0|0.77|1|1|9|0|328 |
| chr8_1 | exon | 9428230 | 9428369 | 9428230 | ID=Msa1177100-mRNA-1:exon:3211;Parent=Msa1177100-mRNA-1 |
| chr8_1 | exon | 9427153 | 9427352 | 9427153 | ID=Msa1177100-mRNA-1:exon:3210;Parent=Msa1177100-mRNA-1 |
| chr8_1 | exon | 9427020 | 9427064 | 9427020 | ID=Msa1177100-mRNA-1:exon:3209;Parent=Msa1177100-mRNA-1 |
| chr8_1 | exon | 9426573 | 9426591 | 9426573 | ID=Msa1177100-mRNA-1:exon:3208;Parent=Msa1177100-mRNA-1 |
| chr8_1 | exon | 9426364 | 9426488 | 9426364 | ID=Msa1177100-mRNA-1:exon:3207;Parent=Msa1177100-mRNA-1 |
| chr8_1 | exon | 9426211 | 9426258 | 9426211 | ID=Msa1177100-mRNA-1:exon:3206;Parent=Msa1177100-mRNA-1 |
| chr8_1 | exon | 9425891 | 9426061 | 9425891 | ID=Msa1177100-mRNA-1:exon:3205;Parent=Msa1177100-mRNA-1 |
| chr8_1 | exon | 9425300 | 9425407 | 9425300 | ID=Msa1177100-mRNA-1:exon:3204;Parent=Msa1177100-mRNA-1 |
| chr8_1 | exon | 9424507 | 9424637 | 9424507 | ID=Msa1177100-mRNA-1:exon:3203;Parent=Msa1177100-mRNA-1 |
| chr8_1 | CDS | 9428230 | 9428369 | 9428230 | ID=Msa1177100-mRNA-1:cds;Parent=Msa1177100-mRNA-1 |
| chr8_1 | CDS | 9427153 | 9427352 | 9427153 | ID=Msa1177100-mRNA-1:cds;Parent=Msa1177100-mRNA-1 |
| chr8_1 | CDS | 9427020 | 9427064 | 9427020 | ID=Msa1177100-mRNA-1:cds;Parent=Msa1177100-mRNA-1 |
| chr8_1 | CDS | 9426573 | 9426591 | 9426573 | ID=Msa1177100-mRNA-1:cds;Parent=Msa1177100-mRNA-1 |
| chr8_1 | CDS | 9426364 | 9426488 | 9426364 | ID=Msa1177100-mRNA-1:cds;Parent=Msa1177100-mRNA-1 |
| chr8_1 | CDS | 9426211 | 9426258 | 9426211 | ID=Msa1177100-mRNA-1:cds;Parent=Msa1177100-mRNA-1 |
| chr8_1 | CDS | 9425891 | 9426061 | 9425891 | ID=Msa1177100-mRNA-1:cds;Parent=Msa1177100-mRNA-1 |
| chr8_1 | CDS | 9425300 | 9425407 | 9425300 | ID=Msa1177100-mRNA-1:cds;Parent=Msa1177100-mRNA-1 |
| chr8_1 | CDS | 9424507 | 9424637 | 9424507 | ID=Msa1177100-mRNA-1:cds;Parent=Msa1177100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
