AlfalfaGEDB | Msa0371510

M. sativa cultivar zhongmu-4 / Msa0371510

KEGG: K00423
GO: -
PFAM: PF07732.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371510	XP_024634983.2	95.382	498	22	1	1	497	1	498	0.0	986

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371510	sp\|P14133\|ASO_CUCSA	67.807	497	159	1	1	497	15	510	0.0	709

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371510	A0A396IVX4	95.382	498	22	1	1	497	1	498	0.0	986

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001800	Msa0371510	0.840830	6.865451e-58	-8.615850e-47
Msa0012380	Msa0371510	-0.801976	6.982883e-49	-8.615850e-47
Msa0030090	Msa0371510	0.806365	8.522441e-50	-8.615850e-47
Msa0044170	Msa0371510	0.810629	1.048022e-50	-8.615850e-47
Msa0044780	Msa0371510	-0.806423	8.287058e-50	-8.615850e-47
Msa0046970	Msa0371510	0.834183	3.473536e-56	-8.615850e-47
Msa0090850	Msa0371510	0.813704	2.237325e-51	-8.615850e-47
Msa0091090	Msa0371510	-0.808898	2.470392e-50	-8.615850e-47
Msa0106540	Msa0371510	0.827210	1.773773e-54	-8.615850e-47
Msa0125600	Msa0371510	0.860771	1.636928e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371510	MtrunA17_Chr3g0118321	95.382	498	22	1	1	497	1	498	0.0	986
Msa0371510	MtrunA17_Chr3g0118331	85.915	497	70	0	1	497	1	497	0.0	877
Msa0371510	MtrunA17_Chr8g0382691	49.689	483	236	5	17	497	26	503	6.87e-164	476
Msa0371510	MtrunA17_Chr3g0118351	77.778	270	36	2	251	497	1	269	1.41e-148	428
Msa0371510	MtrunA17_Chr3g0118341	85.128	195	28	1	1	194	1	195	6.04e-122	355
Msa0371510	MtrunA17_Chr5g0436461	31.395	516	293	17	6	497	7	485	1.43e-58	202
Msa0371510	MtrunA17_Chr7g0237491	31.002	529	296	16	7	497	14	511	4.00e-56	196
Msa0371510	MtrunA17_Chr5g0429511	32.171	516	296	20	4	497	6	489	5.79e-55	193
Msa0371510	MtrunA17_Chr7g0238351	31.015	532	304	19	2	497	8	512	3.44e-54	191
Msa0371510	MtrunA17_Chr7g0237441	30.566	530	303	17	4	497	11	511	2.02e-53	189

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0371510	AT5G21105.3	66.734	493	160	2	9	497	19	511	0.0	695
Msa0371510	AT5G21105.1	66.734	493	160	2	9	497	19	511	0.0	692
Msa0371510	AT5G21100.1	63.354	483	171	4	17	497	16	494	0.0	640
Msa0371510	AT4G39830.1	48.515	505	237	9	7	496	16	512	4.12e-168	487
Msa0371510	AT5G21105.2	67.097	310	101	1	189	497	11	320	1.68e-152	441
Msa0371510	AT4G39830.2	48.700	423	196	8	87	496	3	417	2.56e-136	403
Msa0371510	AT4G39830.3	48.694	421	195	8	89	496	3	415	1.76e-135	400
Msa0371510	AT4G39830.4	46.336	423	193	9	87	496	3	404	5.95e-123	368
Msa0371510	AT5G05390.1	28.090	534	309	17	1	497	1	496	5.77e-52	185
Msa0371510	AT5G58910.2	31.102	508	278	21	24	497	29	498	1.27e-50	182

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Find 174 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAATCATTTCCAAAA+TGG	0.220018	3_1:+69677424	Msa0371510:CDS
AAAATGCAAACCAGTTAAAT+GGG	0.447011	3_1:+69677738	Msa0371510:CDS
AAACAAATCATTTCCAAAAT+GGG	0.418944	3_1:+69677425	Msa0371510:CDS
AAACACTAATGGAAGATTAA+TGG	0.302516	3_1:-69678125	None:intergenic
AAACGTGTAAACACCGTTAC+CGG	0.380846	3_1:-69677684	None:intergenic
AAATCGGTAGTTTCACTAAA+TGG	0.163317	3_1:+69677507	Msa0371510:CDS
AACTCACCATCATAATGAAA+TGG	0.432896	3_1:-69673031	None:intergenic
AAGCATTAATCAACGAATAA+AGG	0.369014	3_1:+69678342	Msa0371510:three_prime_UTR
AATACAGATTCAAAGTTGAC+AGG	0.425137	3_1:+69672659	Msa0371510:CDS
AATATGTTCCTTCCATCGTT+TGG	0.388885	3_1:-69672103	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCAAAAATGAGAAGAAAGTA+TGG	-	chr3_1:69672020-69672039	None:intergenic	30.0%
TTATAACTAGACTGGTACTT+TGG	-	chr3_1:69672518-69672537	None:intergenic	30.0%
CTGTAAAAATGTTTGCAGTT+TGG	+	chr3_1:69672571-69672590	Msa0371510:intron	30.0%
AATACAGATTCAAAGTTGAC+AGG	+	chr3_1:69672659-69672678	Msa0371510:CDS	30.0%
ATACAGATTCAAAGTTGACA+GGG	+	chr3_1:69672660-69672679	Msa0371510:CDS	30.0%
AATTAATCAACATGTAGCAG+TGG	-	chr3_1:69672746-69672765	None:intergenic	30.0%
AACAAAAGAAAAACCATTGC+TGG	-	chr3_1:69672808-69672827	None:intergenic	30.0%
AACTCACCATCATAATGAAA+TGG	-	chr3_1:69673034-69673053	None:intergenic	30.0%
CAACGATGATTTGATGAAAT+GGG	-	chr3_1:69674384-69674403	None:intergenic	30.0%
CTTTCAAATTGCATTGTTGT+AGG	-	chr3_1:69675192-69675211	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	69671913	69678423	69671913	ID=Msa0371510;Name=Msa0371510
chr3_1	mRNA	69671913	69678423	69671913	ID=Msa0371510-mRNA-1;Parent=Msa0371510;Name=Msa0371510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=307\|1\|1\|1\|1\|1\|5\|540\|501
chr3_1	exon	69671913	69672480	69671913	ID=Msa0371510-mRNA-1:exon:14883;Parent=Msa0371510-mRNA-1
chr3_1	exon	69672589	69672681	69672589	ID=Msa0371510-mRNA-1:exon:14884;Parent=Msa0371510-mRNA-1
chr3_1	exon	69672935	69673147	69672935	ID=Msa0371510-mRNA-1:exon:14885;Parent=Msa0371510-mRNA-1
chr3_1	exon	69675124	69675318	69675124	ID=Msa0371510-mRNA-1:exon:14886;Parent=Msa0371510-mRNA-1
chr3_1	exon	69677140	69678423	69677140	ID=Msa0371510-mRNA-1:exon:14887;Parent=Msa0371510-mRNA-1
chr3_1	five_prime_UTR	69671913	69672219	69671913	ID=Msa0371510-mRNA-1:five_prime_utr;Parent=Msa0371510-mRNA-1
chr3_1	CDS	69672220	69672480	69672220	ID=Msa0371510-mRNA-1:cds;Parent=Msa0371510-mRNA-1
chr3_1	CDS	69672589	69672681	69672589	ID=Msa0371510-mRNA-1:cds;Parent=Msa0371510-mRNA-1
chr3_1	CDS	69672935	69673147	69672935	ID=Msa0371510-mRNA-1:cds;Parent=Msa0371510-mRNA-1
chr3_1	CDS	69675124	69675318	69675124	ID=Msa0371510-mRNA-1:cds;Parent=Msa0371510-mRNA-1
chr3_1	CDS	69677140	69677883	69677140	ID=Msa0371510-mRNA-1:cds;Parent=Msa0371510-mRNA-1
chr3_1	three_prime_UTR	69677884	69678423	69677884	ID=Msa0371510-mRNA-1:three_prime_utr;Parent=Msa0371510-mRNA-1

Gene Sequence

>Msa0371510

ATGAGTTTGCTGAAAGCAGTTTTTGTTTGGTGCATATGGTTAGGGTTATTTGAGTTATCATTAGCAAAAGTGAGACACTACAAGTTTGATGTTGAATACATATACAAAAAGCCAGATTGTGTGGAGCATGTTGTGATGGGAATCAATGGCCAGTTTCCAGGCCCAACTATTAAAGCTGAAGTTAATGACACCCTTGTCATTGACCTCACCAACAAGCTCCATACAGAAGGAACTGTTATTCACTGGCATGGAATCAGACAGTTTGGAACTCCTTGGGCTGATGGAACTGCTGCAATCTCTCAGTGTGCTATAAATCCAGGAGAAACTTTTCAATACAGATTCAAAGTTGACAGGCCTGGTACATATTTCTATCATGGACATTTTGGTATGCAAAGAGCAGCAGGGCTGTATGGTTCTCTAATAGTGGATTTACCAAAGGAACAAAGAGAGCCATTTCATTATGATGGTGAGTTTAATCTGCTCCTTAGTGATCTGTGGCACACAAGCTCACATGAACAAGAGGTTGGCCTCTCTTCAGCCCCAATGAGATGGATTGGTGAACCACAGAGCTTGCTCATCAATGGACGAGGACAGTTCAATTGTTCCCTAGCAGCTAAATATGGGAGCACCAACCTACAACAATGCAATTTGAAAGGTGGTGAAGAATGTGCACCCCAGATTCTTCATGTGGAGCCAAAAAAGACCTACAGAATAAGGATTGCTAGTACTACGTCCTTGGCTTCTCTCAACTTGGCCATTTCAAATCACAAACTTATTGTGGTGGAAGCAGATGGAAACTACGTGCACCCATTCGCAGTTGATGACATCGACATCTACTCAGGTGAAACCTACTCAGTACTCCTTACAACAGACCAAGACCCTAAAAAAAACTACTGGCTTTCAATTGGTGTTAGAGGCAGAAAACCAGGCACACCACAAGCCCTAACAATCCTTAACTACAAAACAATCTCTGCCTCAGTTTTTCCAACATTACCACCACCAGTCACACCCTTATGGAACGATACCGAACACAGCAAAGCATTCACAAAACAAATCATTTCCAAAATGGGAACTCCACAGCCACCGAAATCCTCACACCGCACGATTCTCCTCCTCAATACACAAAACAAAATCGGTAGTTTCACTAAATGGGCTATTAACAATGTTTCATTAACATTGCCAACCACACCTTACTTAGGATCAATCAAATTTAAGCTAAACAATACATTTGATAGAAATCCACCACCAGAGAGATTTCCAATGGATTATGACATATTTAAAAATCCAGTTAATCCAAATACAACTACCGGTAACGGTGTTTACACGTTTCAGTTGAATGAGGTTGTTGATGTGATACTACAAAATGCAAACCAGTTAAATGGGAATGGTAGTGAAATTCATCCATGGCATTTGCATGGACATGATTTTTGGGTTTTGGGATATGGTGAAGGGAGATTTAGACCAGGTGTTGATGAGAAAAGTTTCAATTTGAACGTGCACCTTTGA

Protein sequence

>Msa0371510

MSLLKAVFVWCIWLGLFELSLAKVRHYKFDVEYIYKKPDCVEHVVMGINGQFPGPTIKAEVNDTLVIDLTNKLHTEGTVIHWHGIRQFGTPWADGTAAISQCAINPGETFQYRFKVDRPGTYFYHGHFGMQRAAGLYGSLIVDLPKEQREPFHYDGEFNLLLSDLWHTSSHEQEVGLSSAPMRWIGEPQSLLINGRGQFNCSLAAKYGSTNLQQCNLKGGEECAPQILHVEPKKTYRIRIASTTSLASLNLAISNHKLIVVEADGNYVHPFAVDDIDIYSGETYSVLLTTDQDPKKNYWLSIGVRGRKPGTPQALTILNYKTISASVFPTLPPPVTPLWNDTEHSKAFTKQIISKMGTPQPPKSSHRTILLLNTQNKIGSFTKWAINNVSLTLPTTPYLGSIKFKLNNTFDRNPPPERFPMDYDIFKNPVNPNTTTGNGVYTFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGEGRFRPGVDEKSFNLNVHL*