AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371510 MtrunA17_Chr3g0118321 95.382 498 22 1 1 497 1 498 0.0 986
Msa0371510 MtrunA17_Chr3g0118331 85.915 497 70 0 1 497 1 497 0.0 877
Msa0371510 MtrunA17_Chr8g0382691 49.689 483 236 5 17 497 26 503 6.87e-164 476
Msa0371510 MtrunA17_Chr3g0118351 77.778 270 36 2 251 497 1 269 1.41e-148 428
Msa0371510 MtrunA17_Chr3g0118341 85.128 195 28 1 1 194 1 195 6.04e-122 355
Msa0371510 MtrunA17_Chr5g0436461 31.395 516 293 17 6 497 7 485 1.43e-58 202
Msa0371510 MtrunA17_Chr7g0237491 31.002 529 296 16 7 497 14 511 4.00e-56 196
Msa0371510 MtrunA17_Chr5g0429511 32.171 516 296 20 4 497 6 489 5.79e-55 193
Msa0371510 MtrunA17_Chr7g0238351 31.015 532 304 19 2 497 8 512 3.44e-54 191
Msa0371510 MtrunA17_Chr7g0237441 30.566 530 303 17 4 497 11 511 2.02e-53 189
Msa0371510 MtrunA17_Chr5g0404361 30.077 522 303 20 1 497 58 542 2.96e-53 189
Msa0371510 MtrunA17_Chr7g0238941 29.887 532 294 19 7 497 16 509 1.67e-52 187
Msa0371510 MtrunA17_Chr5g0437681 29.213 534 305 18 1 497 1 498 3.60e-52 186
Msa0371510 MtrunA17_Chr5g0404341 29.446 523 306 20 1 497 12 497 9.79e-52 184
Msa0371510 MtrunA17_Chr3g0104061 31.643 493 292 17 22 497 23 487 3.99e-50 180
Msa0371510 MtrunA17_Chr4g0031901 31.693 508 277 22 25 497 44 516 1.73e-49 179
Msa0371510 MtrunA17_Chr2g0278811 31.402 535 297 24 12 497 25 538 2.38e-49 179
Msa0371510 MtrunA17_Chr3g0114211 29.924 528 300 22 2 497 12 501 4.62e-49 177
Msa0371510 MtrunA17_Chr5g0431581 29.207 517 309 18 9 497 4 491 1.28e-46 170
Msa0371510 MtrunA17_Chr4g0024861 28.782 476 274 14 25 486 27 451 7.21e-46 168
Msa0371510 MtrunA17_Chr7g0238981 28.911 505 308 14 21 497 43 524 1.11e-45 168
Msa0371510 MtrunA17_Chr4g0075071 29.106 481 270 16 25 488 31 457 2.50e-45 166
Msa0371510 MtrunA17_Chr7g0240991 28.060 531 311 21 7 497 3 502 4.53e-44 163
Msa0371510 MtrunA17_Chr8g0374271 28.099 484 287 15 25 497 31 464 3.59e-43 160
Msa0371510 MtrunA17_Chr3g0143671 27.745 501 287 19 6 486 9 454 7.92e-43 159
Msa0371510 MtrunA17_Chr8g0346581 28.210 514 283 20 25 497 34 502 1.60e-42 159
Msa0371510 MtrunA17_Chr4g0043251 26.953 512 315 19 1 497 1 468 1.05e-41 156
Msa0371510 MtrunA17_Chr8g0374261 27.802 464 268 17 48 497 52 462 1.36e-41 156
Msa0371510 MtrunA17_Chr3g0079321 27.039 466 286 14 37 484 41 470 1.51e-41 157
Msa0371510 MtrunA17_Chr2g0322441 27.236 492 282 17 25 497 30 464 2.45e-41 155
Msa0371510 MtrunA17_Chr4g0056511 27.859 481 283 15 27 484 29 468 5.42e-41 155
Msa0371510 MtrunA17_Chr5g0402831 28.689 488 276 19 25 497 31 461 1.77e-40 153
Msa0371510 MtrunA17_Chr1g0157341 27.016 496 291 18 11 486 9 453 4.43e-40 152
Msa0371510 MtrunA17_Chr3g0121151 28.320 512 293 22 7 497 49 507 9.94e-40 151
Msa0371510 MtrunA17_Chr7g0240971 26.641 518 308 20 18 497 18 501 2.03e-39 150
Msa0371510 MtrunA17_Chr3g0121161 28.063 506 302 20 7 497 49 507 3.86e-39 150
Msa0371510 MtrunA17_Chr3g0121171 28.747 487 286 19 26 497 27 467 4.78e-39 152
Msa0371510 MtrunA17_Chr3g0121171 28.063 506 302 20 7 497 584 1042 5.25e-39 152
Msa0371510 MtrunA17_Chr3g0121171 28.320 512 293 22 7 497 1159 1617 8.44e-38 148
Msa0371510 MtrunA17_Chr3g0121171 27.460 437 257 18 76 497 1792 2183 3.63e-33 134
Msa0371510 MtrunA17_Chr4g0038671 25.941 478 288 15 25 488 30 455 9.40e-38 145
Msa0371510 MtrunA17_Chr4g0005921 33.559 295 165 9 7 296 9 277 1.92e-37 144
Msa0371510 MtrunA17_Chr7g0234061 27.140 479 289 17 26 484 30 468 1.95e-37 145
Msa0371510 MtrunA17_Chr4g0008521 27.255 510 304 16 24 497 25 503 2.26e-37 144
Msa0371510 MtrunA17_Chr4g0043261 27.236 492 283 19 26 497 26 462 2.07e-35 139
Msa0371510 MtrunA17_Chr4g0024641 26.366 421 247 13 80 486 3 374 4.51e-29 121
Msa0371510 MtrunA17_Chr3g0133871 33.566 143 91 4 26 166 33 173 4.22e-18 83.2
Msa0371510 MtrunA17_Chr1g0197301 26.545 275 172 9 234 497 5 260 5.55e-18 85.1
Msa0371510 MtrunA17_Chr3g0133861 29.818 275 159 12 249 497 5 271 5.66e-15 76.3
Msa0371510 MtrunA17_Chr1g0197311 27.053 207 115 5 44 218 43 245 6.62e-15 74.3
Msa0371510 MtrunA17_Chr5g0436431 29.412 204 112 8 313 497 11 201 1.35e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371510 AT5G21105.3 66.734 493 160 2 9 497 19 511 0.0 695
Msa0371510 AT5G21105.1 66.734 493 160 2 9 497 19 511 0.0 692
Msa0371510 AT5G21100.1 63.354 483 171 4 17 497 16 494 0.0 640
Msa0371510 AT4G39830.1 48.515 505 237 9 7 496 16 512 4.12e-168 487
Msa0371510 AT5G21105.2 67.097 310 101 1 189 497 11 320 1.68e-152 441
Msa0371510 AT4G39830.2 48.700 423 196 8 87 496 3 417 2.56e-136 403
Msa0371510 AT4G39830.3 48.694 421 195 8 89 496 3 415 1.76e-135 400
Msa0371510 AT4G39830.4 46.336 423 193 9 87 496 3 404 5.95e-123 368
Msa0371510 AT5G05390.1 28.090 534 309 17 1 497 1 496 5.77e-52 185
Msa0371510 AT5G58910.2 31.102 508 278 21 24 497 29 498 1.27e-50 182
Msa0371510 AT5G58910.3 31.299 508 276 22 24 497 29 497 1.89e-49 179
Msa0371510 AT5G03260.1 29.981 517 302 20 7 497 6 488 1.58e-48 176
Msa0371510 AT1G55570.1 31.717 495 264 22 26 499 30 471 1.77e-48 176
Msa0371510 AT2G29130.1 30.798 526 308 20 1 497 6 504 2.00e-47 173
Msa0371510 AT5G07130.1 30.755 530 304 19 1 497 1 500 2.35e-47 173
Msa0371510 AT5G48100.1 29.637 523 294 21 14 500 11 495 2.37e-47 173
Msa0371510 AT2G46570.1 28.376 511 296 19 22 500 29 501 2.84e-47 172
Msa0371510 AT5G09360.1 29.112 529 303 19 1 497 12 500 5.13e-46 169
Msa0371510 AT4G12420.1 28.392 479 283 17 27 483 27 467 1.10e-45 169
Msa0371510 AT4G12420.2 28.392 479 283 17 27 483 27 467 1.10e-45 169
Msa0371510 AT2G30210.1 28.175 504 311 13 21 497 22 501 1.35e-45 168
Msa0371510 AT2G40370.1 26.617 541 323 16 1 497 1 511 2.07e-45 167
Msa0371510 AT2G38080.1 30.518 521 295 21 8 497 5 489 2.36e-45 167
Msa0371510 AT5G01040.1 27.553 519 311 17 10 497 13 497 5.30e-45 167
Msa0371510 AT4G25240.2 29.283 502 295 18 4 484 7 469 8.18e-45 166
Msa0371510 AT4G25240.1 29.283 502 295 18 4 484 7 469 8.18e-45 166
Msa0371510 AT4G22010.1 29.098 488 279 18 25 497 26 461 8.60e-45 165
Msa0371510 AT1G18140.1 28.654 520 298 17 20 497 24 512 1.17e-44 166
Msa0371510 AT5G51480.1 28.512 477 285 18 27 484 30 469 1.44e-44 166
Msa0371510 AT5G01050.1 27.778 522 308 18 10 497 13 499 3.11e-44 164
Msa0371510 AT3G13390.1 30.505 495 270 22 26 499 29 470 1.59e-43 162
Msa0371510 AT1G21850.1 27.898 509 304 17 4 498 3 462 3.04e-43 161
Msa0371510 AT5G60020.2 28.257 545 304 21 1 497 3 508 3.77e-43 161
Msa0371510 AT1G21860.1 28.000 500 290 16 16 498 16 462 8.82e-43 160
Msa0371510 AT5G60020.1 28.096 541 310 18 1 497 3 508 1.04e-42 160
Msa0371510 AT5G66920.1 26.793 474 290 11 25 489 37 462 1.17e-42 159
Msa0371510 AT5G48450.2 26.667 495 302 15 9 484 8 460 9.32e-42 157
Msa0371510 AT3G09220.1 28.131 519 307 19 12 497 13 498 1.48e-41 157
Msa0371510 AT1G75790.1 27.875 513 279 18 4 484 1 454 1.56e-41 156
Msa0371510 AT5G48450.1 26.667 495 302 15 9 484 8 460 1.63e-41 157
Msa0371510 AT5G01190.1 29.317 498 296 18 24 497 24 489 2.52e-41 156
Msa0371510 AT5G58910.1 29.532 491 269 21 40 497 8 454 1.33e-40 153
Msa0371510 AT2G23630.2 27.536 483 287 15 27 497 37 468 1.36e-39 151
Msa0371510 AT2G23630.1 27.872 470 277 14 27 484 32 451 1.49e-39 150
Msa0371510 AT1G76160.1 25.896 502 302 16 5 488 4 453 2.28e-39 150
Msa0371510 AT5G60020.3 28.514 498 287 18 40 497 8 476 2.30e-39 150
Msa0371510 AT5G01190.2 29.560 477 280 18 45 497 31 475 3.44e-39 150
Msa0371510 AT4G37160.1 26.294 483 294 15 27 497 33 465 1.99e-38 147
Msa0371510 AT4G28090.1 26.908 498 289 18 9 484 9 453 3.09e-37 144
Msa0371510 AT1G41830.1 24.409 508 311 17 7 497 11 462 5.45e-37 143
Msa0371510 AT4G37160.2 25.966 466 284 14 27 480 33 449 3.81e-36 139
Msa0371510 AT3G13400.2 27.347 490 291 21 26 499 28 468 1.87e-34 136
Msa0371510 AT3G13400.1 27.347 490 291 21 26 499 28 468 1.87e-34 136
Msa0371510 AT1G55560.1 26.955 486 296 18 27 499 28 467 1.48e-33 134
Msa0371510 AT2G46570.2 27.394 449 257 18 83 499 4 415 1.81e-33 132
Msa0371510 AT4G38420.3 24.341 493 301 16 25 497 30 470 6.87e-30 122
Msa0371510 AT5G07130.2 29.452 438 252 16 91 497 4 415 9.01e-30 122
Msa0371510 AT5G07130.3 29.452 438 252 16 91 497 4 415 9.01e-30 122
Msa0371510 AT4G38420.2 24.580 476 288 15 25 480 30 454 9.41e-30 121
Msa0371510 AT4G38420.1 24.291 494 302 16 25 498 30 471 1.03e-29 122
Msa0371510 AT3G09220.2 26.852 432 251 18 99 497 2 401 1.21e-23 103

Find 174 sgRNAs with CRISPR-Local

Find 460 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTAACTAGTCTCAATTT+TGG 0.160336 3_1:-69678092 None:intergenic
AAATCGGTAGTTTCACTAAA+TGG 0.163317 3_1:+69677507 Msa0371510:CDS
TATTTCTATCATGGACATTT+TGG 0.179942 3_1:+69672944 Msa0371510:CDS
CAAAATGCAAACCAGTTAAA+TGG 0.189861 3_1:+69677737 Msa0371510:CDS
CCGTTACCGGTAGTTGTATT+TGG 0.192418 3_1:-69677671 None:intergenic
AAAACAAATCATTTCCAAAA+TGG 0.220018 3_1:+69677424 Msa0371510:CDS
TTGGACTGCATTAAGGTTTA+AGG 0.221108 3_1:+69677912 Msa0371510:three_prime_UTR
TTGTCTTTCTTATCTTTCTA+AGG 0.225064 3_1:+69678151 Msa0371510:three_prime_UTR
CATATGGTTGGACTGCATTA+AGG 0.257525 3_1:+69677905 Msa0371510:three_prime_UTR
TGTTCCCTAGCAGCTAAATA+TGG 0.261114 3_1:+69675157 Msa0371510:CDS
TGGCTGTGGAGTTCCCATTT+TGG 0.285078 3_1:-69677438 None:intergenic
GTAGTTGTATTTGGATTAAC+TGG 0.289880 3_1:-69677662 None:intergenic
TTTGTTTGGTGCATATGGTT+AGG 0.295869 3_1:+69672241 Msa0371510:CDS
AAACACTAATGGAAGATTAA+TGG 0.302516 3_1:-69678125 None:intergenic
CTTTCAAATTGCATTGTTGT+AGG 0.308083 3_1:-69675189 None:intergenic
AGGCAGATAACCCTGGTGTT+TGG 0.311229 3_1:+69677932 Msa0371510:three_prime_UTR
CACTACCATTCCCATTTAAC+TGG 0.315490 3_1:-69677748 None:intergenic
GGCAGATAACCCTGGTGTTT+GGG 0.315629 3_1:+69677933 Msa0371510:three_prime_UTR
TGGCTTTCAATTGGTGTTAG+AGG 0.316278 3_1:+69677272 Msa0371510:CDS
TTGGCTCCACATGAAGAATC+TGG 0.317779 3_1:-69675231 None:intergenic
AATGGCTCTCTTTGTTCCTT+TGG 0.323053 3_1:-69673013 None:intergenic
CATGTTTCTCATGTATAATT+AGG 0.333539 3_1:+69678220 Msa0371510:three_prime_UTR
CATTGAACCACATTTGCATA+TGG 0.333948 3_1:+69677969 Msa0371510:three_prime_UTR
CTGAGGCTGTTCATAAAGTT+AGG 0.336809 3_1:+69678010 Msa0371510:three_prime_UTR
GGAATCAATGGCCAGTTTCC+AGG 0.342868 3_1:+69672358 Msa0371510:CDS
TAGGGTCTTGGTCTGTTGTA+AGG 0.344364 3_1:-69677238 None:intergenic
CACCACCAGTCACACCCTTA+TGG 0.345496 3_1:+69677372 Msa0371510:CDS
CGTCTTTATGCTTTCCATCC+TGG 0.346791 3_1:+69672139 Msa0371510:five_prime_UTR
GTTCACCAATCCATCTCATT+GGG 0.346982 3_1:-69673120 None:intergenic
TAATAGTTGGGCCTGGAAAC+TGG 0.350475 3_1:-69672369 None:intergenic
TAAATTTGCATGGATGTTAA+TGG 0.367515 3_1:+69678368 Msa0371510:three_prime_UTR
AAGCATTAATCAACGAATAA+AGG 0.369014 3_1:+69678342 Msa0371510:three_prime_UTR
TTGTTTGGTGCATATGGTTA+GGG 0.369163 3_1:+69672242 Msa0371510:CDS
AAACGTGTAAACACCGTTAC+CGG 0.380846 3_1:-69677684 None:intergenic
TTAACTTCAGCTTTAATAGT+TGG 0.382060 3_1:-69672382 None:intergenic
TAACTTCAGCTTTAATAGTT+GGG 0.385140 3_1:-69672381 None:intergenic
AATATGTTCCTTCCATCGTT+TGG 0.388885 3_1:-69672103 None:intergenic
CCACACTTAAGAGCTTCTTT+AGG 0.398032 3_1:-69678039 None:intergenic
CTGTATTGAAAAGTTTCTCC+TGG 0.402941 3_1:-69672643 None:intergenic
TTTGCAGTTTGGAACTCCTT+GGG 0.403133 3_1:+69672582 Msa0371510:intron
ACAACATGCTCCACACAATC+TGG 0.411894 3_1:-69672331 None:intergenic
GTTAGGGCTTGTGGTGTGCC+TGG 0.412883 3_1:-69677302 None:intergenic
GTGTTCGGTATCGTTCCATA+AGG 0.413714 3_1:-69677387 None:intergenic
CTCAATACACAAAACAAAAT+CGG 0.415806 3_1:+69677491 Msa0371510:CDS
GTGACTGGTGGTGGTAATGT+TGG 0.417838 3_1:-69677362 None:intergenic
AAACAAATCATTTCCAAAAT+GGG 0.418944 3_1:+69677425 Msa0371510:CDS
TCTAAGGTATCATCACTTCA+TGG 0.419599 3_1:+69678167 Msa0371510:three_prime_UTR
TTTGGAACTCCTTGGGCTGA+TGG 0.420214 3_1:+69672589 Msa0371510:CDS
TTAGGGCCTGTTTGTTTCCA+TGG 0.422389 3_1:-69672168 None:intergenic
ACTGCAGTTATATTTCCATA+TGG 0.422579 3_1:+69677889 Msa0371510:three_prime_UTR
TCCTTCTGTATGGAGCTTGT+TGG 0.424095 3_1:-69672428 None:intergenic
AATACAGATTCAAAGTTGAC+AGG 0.425137 3_1:+69672659 Msa0371510:CDS
AACTCACCATCATAATGAAA+TGG 0.432896 3_1:-69673031 None:intergenic
CTTAATGCAGTCCAACCATA+TGG 0.434255 3_1:-69677904 None:intergenic
AATTTGAACGTGCACCTTTG+AGG 0.435993 3_1:+69677863 Msa0371510:CDS
CGCCTAAAACAATCTTTCCT+TGG 0.436553 3_1:+69672065 Msa0371510:five_prime_UTR
GGTTCACCAATCCATCTCAT+TGG 0.437708 3_1:-69673121 None:intergenic
AATTTGATTGATCCTAAGTA+AGG 0.437892 3_1:-69677566 None:intergenic
AATCGGTAGTTTCACTAAAT+GGG 0.438520 3_1:+69677508 Msa0371510:CDS
TTCCATCCTGGCTCATTCCA+TGG 0.441274 3_1:+69672151 Msa0371510:five_prime_UTR
TGTGAATGCTTTGCTGTGTT+CGG 0.443250 3_1:-69677402 None:intergenic
GTTTGCAGTTTGGAACTCCT+TGG 0.444823 3_1:+69672581 Msa0371510:intron
TTAAGGATTGTTAGGGCTTG+TGG 0.446548 3_1:-69677311 None:intergenic
AAAATGCAAACCAGTTAAAT+GGG 0.447011 3_1:+69677738 Msa0371510:CDS
CAAAGAGCAGCAGGGCTGTA+TGG 0.448009 3_1:+69672971 Msa0371510:CDS
CAGTTATATTTCCATATGGT+TGG 0.450338 3_1:+69677893 Msa0371510:three_prime_UTR
ATACTATTCACGCGGGGAGT+TGG 0.451050 3_1:-69678251 None:intergenic
CTCATTCCATGGAAACAAAC+AGG 0.452662 3_1:+69672162 Msa0371510:five_prime_UTR
AGAGAGCCATTTCATTATGA+TGG 0.456007 3_1:+69673025 Msa0371510:CDS
GATGTCATTTAGGAATATCT+AGG 0.458902 3_1:-69678070 None:intergenic
TAGGAGAAAACTCACTGAAA+TGG 0.458974 3_1:-69675311 None:intergenic
TTGCCAACCACACCTTACTT+AGG 0.459014 3_1:+69677554 Msa0371510:CDS
CAAATTGCATTGTTGTAGGT+TGG 0.462781 3_1:-69675185 None:intergenic
TGGCTCCACATGAAGAATCT+GGG 0.463007 3_1:-69675230 None:intergenic
GAATAACAGTTCCTTCTGTA+TGG 0.465247 3_1:-69672438 None:intergenic
TTAAATATGTCATAATCCAT+TGG 0.467428 3_1:-69677635 None:intergenic
ATTGAACCACATTTGCATAT+GGG 0.467926 3_1:+69677970 Msa0371510:three_prime_UTR
TTTGTAGTTAAGGATTGTTA+GGG 0.470399 3_1:-69677318 None:intergenic
TTTGGTATGCAAAGAGCAGC+AGG 0.470698 3_1:+69672962 Msa0371510:CDS
CCTGGTACATATTTCTATCA+TGG 0.478578 3_1:+69672935 Msa0371510:CDS
TAATCCATTGGAAATCTCTC+TGG 0.486255 3_1:-69677623 None:intergenic
GTTCCCTAGCAGCTAAATAT+GGG 0.491107 3_1:+69675158 Msa0371510:CDS
CAATGGAATGCCCAAACACC+AGG 0.492231 3_1:-69677943 None:intergenic
CCCCGCGTGAATAGTATGTA+GGG 0.496003 3_1:+69678257 Msa0371510:three_prime_UTR
TCAGCTTTAATAGTTGGGCC+TGG 0.499380 3_1:-69672376 None:intergenic
TGTGAGGATTTCGGTGGCTG+TGG 0.503552 3_1:-69677452 None:intergenic
GTCCTTGGCTTCTCTCAACT+TGG 0.506872 3_1:+69675288 Msa0371510:CDS
TGTTCGGTATCGTTCCATAA+GGG 0.510120 3_1:-69677386 None:intergenic
GATTGCTAGTACTACGTCCT+TGG 0.510808 3_1:+69675273 Msa0371510:CDS
TCAGAATCACAAACTTATTG+TGG 0.512257 3_1:+69677136 Msa0371510:intron
CATAAGGGTGTGACTGGTGG+TGG 0.513495 3_1:-69677371 None:intergenic
ATCGTGCGGTGTGAGGATTT+CGG 0.515283 3_1:-69677461 None:intergenic
TCAGCCCCAATGAGATGGAT+TGG 0.516747 3_1:+69673115 Msa0371510:CDS
GCTGTATGGTTCTCTAATAG+TGG 0.517469 3_1:+69672985 Msa0371510:CDS
ACCACATTTGCATATGGGAA+TGG 0.518745 3_1:+69677975 Msa0371510:three_prime_UTR
ATTGGAAATCTCTCTGGTGG+TGG 0.520673 3_1:-69677617 None:intergenic
CTTATTGTGGTGGAAGCAGA+TGG 0.523378 3_1:+69677149 Msa0371510:CDS
TTGTTTCCATGGAATGAGCC+AGG 0.527183 3_1:-69672157 None:intergenic
ATCTGCTCCTTAGTGATCTG+TGG 0.529687 3_1:+69673056 Msa0371510:CDS
CCAAATACAACTACCGGTAA+CGG 0.532128 3_1:+69677671 Msa0371510:CDS
TCTCTTCAGCCCCAATGAGA+TGG 0.532184 3_1:+69673110 Msa0371510:CDS
CAGAAGGAACTGTTATTCAC+TGG 0.535040 3_1:+69672443 Msa0371510:CDS
GTTAATCCAAATACAACTAC+CGG 0.535206 3_1:+69677665 Msa0371510:CDS
TTCCATGGAATGAGCCAGGA+TGG 0.538312 3_1:-69672153 None:intergenic
TGCTCCCATATTTAGCTGCT+AGG 0.538328 3_1:-69675162 None:intergenic
TCTCAGTGTGCTATAAATCC+AGG 0.546219 3_1:+69672625 Msa0371510:CDS
CTGTATGGAGCTTGTTGGTG+AGG 0.546569 3_1:-69672423 None:intergenic
TCGTTCCATAAGGGTGTGAC+TGG 0.548390 3_1:-69677377 None:intergenic
GCAAACCAGTTAAATGGGAA+TGG 0.548393 3_1:+69677743 Msa0371510:CDS
GCTCCCATATTTAGCTGCTA+GGG 0.548844 3_1:-69675161 None:intergenic
CCACATTTGCATATGGGAAT+GGG 0.550546 3_1:+69677976 Msa0371510:three_prime_UTR
ACTAGCAATCCTTATTCTGT+AGG 0.552909 3_1:-69675260 None:intergenic
CCCATTCCCATATGCAAATG+TGG 0.553246 3_1:-69677976 None:intergenic
GGTGTTAGAGGCAGAAAACC+AGG 0.555537 3_1:+69677284 Msa0371510:CDS
ATTCATCCATGGCATTTGCA+TGG 0.556495 3_1:+69677773 Msa0371510:CDS
CATGTTGTGATGGGAATCAA+TGG 0.556686 3_1:+69672346 Msa0371510:CDS
GGAACTGTTATTCACTGGCA+TGG 0.556886 3_1:+69672448 Msa0371510:CDS
AATGAGAAGAAAGTATGGAA+TGG 0.557228 3_1:-69672012 None:intergenic
CTACAACAATGCAATTTGAA+AGG 0.558037 3_1:+69675190 Msa0371510:CDS
TGTTGTAAGGAGTACTGAGT+AGG 0.563668 3_1:-69677225 None:intergenic
CCATGATAGAAATATGTACC+AGG 0.570980 3_1:-69672935 None:intergenic
CGATGTCATCAACTGCGAAT+GGG 0.572651 3_1:-69677184 None:intergenic
CAGAGAAACCAAACGATGGA+AGG 0.577155 3_1:+69672095 Msa0371510:five_prime_UTR
TTGTGTGGAGCATGTTGTGA+TGG 0.577399 3_1:+69672336 Msa0371510:CDS
GATCCTAAGTAAGGTGTGGT+TGG 0.579576 3_1:-69677557 None:intergenic
GAATCACAAACTTATTGTGG+TGG 0.579698 3_1:+69677139 Msa0371510:intron
GGCCAAGTTGAGAGAAGCCA+AGG 0.580752 3_1:-69675290 None:intergenic
ATCTCATTGGGGCTGAAGAG+AGG 0.581211 3_1:-69673108 None:intergenic
ACCACCAGAGAGATTTCCAA+TGG 0.581481 3_1:+69677619 Msa0371510:CDS
TCTAATAGTGGATTTACCAA+AGG 0.582956 3_1:+69672997 Msa0371510:CDS
GAGATGGATTGGTGAACCAC+AGG 0.584866 3_1:+69673126 Msa0371510:CDS
TCCCCGCGTGAATAGTATGT+AGG 0.585500 3_1:+69678256 Msa0371510:three_prime_UTR
TCGATGTCATCAACTGCGAA+TGG 0.586686 3_1:-69677185 None:intergenic
ATAACTGCAGTGTTCCTCAA+AGG 0.587942 3_1:-69677877 None:intergenic
ACTAATGGAAGATTAATGGT+TGG 0.587978 3_1:-69678121 None:intergenic
TCACTGGCATGGAATCAGAC+AGG 0.589797 3_1:+69672459 Msa0371510:CDS
ATAAAGGTGATAAATTTGCA+TGG 0.590600 3_1:+69678358 Msa0371510:three_prime_UTR
CACAAGCTCACATGAACAAG+AGG 0.595059 3_1:+69673081 Msa0371510:CDS
TTACACGTTTCAGTTGAATG+AGG 0.598282 3_1:+69677697 Msa0371510:CDS
GAGGAGAATCGTGCGGTGTG+AGG 0.599110 3_1:-69677468 None:intergenic
TGTGTGGAGCATGTTGTGAT+GGG 0.602225 3_1:+69672337 Msa0371510:CDS
TGCACCCCAGATTCTTCATG+TGG 0.602253 3_1:+69675225 Msa0371510:CDS
GGCTCCACATGAAGAATCTG+GGG 0.602686 3_1:-69675229 None:intergenic
AGGTTTAAGGCAGATAACCC+TGG 0.609626 3_1:+69677925 Msa0371510:three_prime_UTR
CAACAATGCAATTTGAAAGG+TGG 0.612313 3_1:+69675193 Msa0371510:CDS
TCATGTCCATGCAAATGCCA+TGG 0.613062 3_1:-69677779 None:intergenic
GATGACATCGACATCTACTC+AGG 0.614053 3_1:+69677197 Msa0371510:CDS
ATACAGATTCAAAGTTGACA+GGG 0.614232 3_1:+69672660 Msa0371510:CDS
TTGTGTGCCACAGATCACTA+AGG 0.616013 3_1:-69673063 None:intergenic
AGCTCACATGAACAAGAGGT+TGG 0.616753 3_1:+69673085 Msa0371510:CDS
CAGGATGGAAAGCATAAAGA+CGG 0.617945 3_1:-69672138 None:intergenic
ACCAACAAGCTCCATACAGA+AGG 0.620491 3_1:+69672427 Msa0371510:CDS
AGCTTGCTCATCAATGGACG+AGG 0.623207 3_1:+69675124 Msa0371510:CDS
TTCCATAAGGGTGTGACTGG+TGG 0.624649 3_1:-69677374 None:intergenic
TCCATTGGAAATCTCTCTGG+TGG 0.626333 3_1:-69677620 None:intergenic
CCTAAAGAAGCTCTTAAGTG+TGG 0.626917 3_1:+69678039 Msa0371510:three_prime_UTR
ATGGTAGTGAAATTCATCCA+TGG 0.631220 3_1:+69677762 Msa0371510:CDS
CCCCTACATACTATTCACGC+GGG 0.638161 3_1:-69678258 None:intergenic
TTCACCAATCCATCTCATTG+GGG 0.642456 3_1:-69673119 None:intergenic
GCAGCAGTTCCATCAGCCCA+AGG 0.643166 3_1:-69672598 None:intergenic
CCGCGTGAATAGTATGTAGG+GGG 0.654165 3_1:+69678259 Msa0371510:three_prime_UTR
TTGGTATGCAAAGAGCAGCA+GGG 0.660158 3_1:+69672963 Msa0371510:CDS
CCCGCGTGAATAGTATGTAG+GGG 0.662901 3_1:+69678258 Msa0371510:three_prime_UTR
AATGTGGTTCAATGTGACAA+TGG 0.664380 3_1:-69677960 None:intergenic
GGTTTCTCTGACAAGCACCA+AGG 0.668301 3_1:-69672082 None:intergenic
GATTGATCCTAAGTAAGGTG+TGG 0.679397 3_1:-69677561 None:intergenic
TGTTGGTGAGGTCAATGACA+AGG 0.689203 3_1:-69672411 None:intergenic
GTGCGGTGTGAGGATTTCGG+TGG 0.702906 3_1:-69677458 None:intergenic
AATGGAATGCCCAAACACCA+GGG 0.708938 3_1:-69677942 None:intergenic
GTTGGTGAGGTCAATGACAA+GGG 0.718919 3_1:-69672410 None:intergenic
GGTGAAGGGAGATTTAGACC+AGG 0.724991 3_1:+69677821 Msa0371510:CDS
CCCTACATACTATTCACGCG+GGG 0.729879 3_1:-69678257 None:intergenic
TTGTCAGAGAAACCAAACGA+TGG 0.737661 3_1:+69672091 Msa0371510:five_prime_UTR
TATTGAGGAGGAGAATCGTG+CGG 0.763434 3_1:-69677475 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATATATATAATATTAAC+TGG + chr3_1:69672891-69672910 Msa0371510:intron 10.0%
!! TAGAAATAAAAATTGAAAAT+TGG + chr3_1:69673835-69673854 Msa0371510:intron 10.0%
!! AGAAATAAAAATTGAAAATT+GGG + chr3_1:69673836-69673855 Msa0371510:intron 10.0%
!!! AAATTTTTCTACTTTTTTTT+TGG + chr3_1:69674533-69674552 Msa0371510:intron 10.0%
!! GATATTTAAAAAAGAATAAA+TGG - chr3_1:69675925-69675944 None:intergenic 10.0%
!!! TAAATATCATAGTTTTTTTT+TGG + chr3_1:69675937-69675956 Msa0371510:intron 10.0%
!!! TTTATAGAATTATTTTTTGT+TGG - chr3_1:69676300-69676319 None:intergenic 10.0%
!!! GTTTTATTAAAAATGTTATT+TGG - chr3_1:69676908-69676927 None:intergenic 10.0%
!! ATATTTAATTATAACTAGAC+TGG - chr3_1:69672526-69672545 None:intergenic 15.0%
!! TATATAATATAATTAGAGCT+AGG + chr3_1:69672868-69672887 Msa0371510:intron 15.0%
!! TATATATAATATTAACTGGT+TGG + chr3_1:69672895-69672914 Msa0371510:intron 15.0%
!!! TTTTAAAGCATAATAACTTT+TGG + chr3_1:69673601-69673620 Msa0371510:intron 15.0%
!!! TTTAATAAAAGTACCTATTA+AGG + chr3_1:69673985-69674004 Msa0371510:intron 15.0%
!! GTTTAATATATAAAGATAGT+GGG - chr3_1:69674072-69674091 None:intergenic 15.0%
!! TGTTTAATATATAAAGATAG+TGG - chr3_1:69674073-69674092 None:intergenic 15.0%
!!! TTTTATTACTTTTTTAAACG+TGG + chr3_1:69674185-69674204 Msa0371510:intron 15.0%
!!! TTTATTACTTTTTTAAACGT+GGG + chr3_1:69674186-69674205 Msa0371510:intron 15.0%
!! CTTAAAAAAAAAATATGAAC+TGG + chr3_1:69674507-69674526 Msa0371510:intron 15.0%
!! TTGTCTTGATTAAAATTTAA+AGG - chr3_1:69674656-69674675 None:intergenic 15.0%
!!! AGTATTATTTTTCATTCTTT+TGG + chr3_1:69674941-69674960 Msa0371510:intron 15.0%
!! ACTATATTATCATTCATAAA+AGG - chr3_1:69675083-69675102 None:intergenic 15.0%
!!! TATTTTGCATATCATTATTA+GGG + chr3_1:69675450-69675469 Msa0371510:intron 15.0%
!!! TTGAAAAAATGTTTTAGATA+TGG + chr3_1:69675761-69675780 Msa0371510:intron 15.0%
!! CATTATCACATTATATTTAA+AGG - chr3_1:69676347-69676366 None:intergenic 15.0%
!! ACATCATATTCATATGAAAA+AGG - chr3_1:69673754-69673773 None:intergenic 20.0%
!!! CATATTTAAGTACTTTTCAT+TGG - chr3_1:69674048-69674067 None:intergenic 20.0%
!!! TATTACTCATTTTTACAAGT+GGG + chr3_1:69674106-69674125 Msa0371510:intron 20.0%
!! AAAAAAAAAATTGACAAGTG+GGG - chr3_1:69674444-69674463 None:intergenic 20.0%
!! GAAAAAAAAAATTGACAAGT+GGG - chr3_1:69674445-69674464 None:intergenic 20.0%
!! TGAAAAAAAAAATTGACAAG+TGG - chr3_1:69674446-69674465 None:intergenic 20.0%
!! AATTGTAAGTTAATATGAAC+TGG + chr3_1:69674605-69674624 Msa0371510:intron 20.0%
!! ACATATATCATATATGTAGT+GGG - chr3_1:69675344-69675363 None:intergenic 20.0%
!! AACATATATCATATATGTAG+TGG - chr3_1:69675345-69675364 None:intergenic 20.0%
!!! CTATTTTGCATATCATTATT+AGG + chr3_1:69675449-69675468 Msa0371510:intron 20.0%
!!! CAATTGATTCCTTTTTTATT+TGG - chr3_1:69675582-69675601 None:intergenic 20.0%
!! GAAAACGAATGAAATAATTT+AGG + chr3_1:69675665-69675684 Msa0371510:intron 20.0%
!! ATCGTAGGAATTAAAAATTA+AGG + chr3_1:69675833-69675852 Msa0371510:intron 20.0%
!!! ATATCATAGTTTTTTTTTGG+TGG + chr3_1:69675940-69675959 Msa0371510:intron 20.0%
!! TGTTCAATTAGTTGTTATAT+TGG + chr3_1:69676118-69676137 Msa0371510:intron 20.0%
!! ATACATTCAAATAAATGAAG+CGG + chr3_1:69676272-69676291 Msa0371510:intron 20.0%
!!! TATAATGTGATAATGATGAA+CGG + chr3_1:69676352-69676371 Msa0371510:intron 20.0%
!! CGAATTAAATATTGTTTCAT+TGG + chr3_1:69676697-69676716 Msa0371510:intron 20.0%
!! TTAAATATTGTTTCATTGGT+TGG + chr3_1:69676701-69676720 Msa0371510:intron 20.0%
!! AACTTCACGTTAAATTATTT+AGG + chr3_1:69676740-69676759 Msa0371510:intron 20.0%
!! GAAAAGTTGAATTTAAATCT+TGG + chr3_1:69676762-69676781 Msa0371510:intron 20.0%
!!! CATTTAGATTTAGAATATCT+TGG - chr3_1:69676965-69676984 None:intergenic 20.0%
!! TGAAATAATGAATCAATCTA+TGG - chr3_1:69677083-69677102 None:intergenic 20.0%
!! AAAACAAATCATTTCCAAAA+TGG + chr3_1:69677424-69677443 Msa0371510:CDS 20.0%
!! AAACAAATCATTTCCAAAAT+GGG + chr3_1:69677425-69677444 Msa0371510:CDS 20.0%
!! TTAAATATGTCATAATCCAT+TGG - chr3_1:69677638-69677657 None:intergenic 20.0%
!!! TAATTAACTAGTCTCAATTT+TGG - chr3_1:69678095-69678114 None:intergenic 20.0%
!! AAAGACAAAAAAAACACTAA+TGG - chr3_1:69678139-69678158 None:intergenic 20.0%
!! TATTTTGCAGGAAATGAAAT+AGG + chr3_1:69671933-69671952 Msa0371510:five_prime_UTR 25.0%
!! GTGAAATTTTACAAAACGAA+GGG + chr3_1:69671960-69671979 Msa0371510:five_prime_UTR 25.0%
!!! CATACTTTCTTCTCATTTTT+GGG + chr3_1:69672018-69672037 Msa0371510:five_prime_UTR 25.0%
!! TAACTTCAGCTTTAATAGTT+GGG - chr3_1:69672384-69672403 None:intergenic 25.0%
!! TTAACTTCAGCTTTAATAGT+TGG - chr3_1:69672385-69672404 None:intergenic 25.0%
!!! TATTTCTATCATGGACATTT+TGG + chr3_1:69672944-69672963 Msa0371510:CDS 25.0%
! AGTGTAAAAGTTTCTTTACA+AGG - chr3_1:69673326-69673345 None:intergenic 25.0%
!!! AGTTTTAAAGTTGTCATGAT+CGG + chr3_1:69673443-69673462 Msa0371510:intron 25.0%
!!! TCACAAATAAAGAGTATCAT+TGG - chr3_1:69673704-69673723 None:intergenic 25.0%
!! CTTTCAAGAATTTTATTGTC+TGG - chr3_1:69673791-69673810 None:intergenic 25.0%
! TTATTAGGTATTAGGTGAAT+GGG - chr3_1:69673882-69673901 None:intergenic 25.0%
! ATTATTAGGTATTAGGTGAA+TGG - chr3_1:69673883-69673902 None:intergenic 25.0%
! CTTAGGAATTATTAGGTATT+AGG - chr3_1:69673890-69673909 None:intergenic 25.0%
!!! CTATTACTCATTTTTACAAG+TGG + chr3_1:69674105-69674124 Msa0371510:intron 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr3_1:69674133-69674152 None:intergenic 25.0%
! TTATTACTTCTTTATGCAAG+TGG + chr3_1:69674146-69674165 Msa0371510:intron 25.0%
! TATTACTTCTTTATGCAAGT+GGG + chr3_1:69674147-69674166 Msa0371510:intron 25.0%
! GTAATAAAATGTGTACTACT+TGG - chr3_1:69674133-69674152 None:intergenic 25.0%
!! TCGTTGGAATTTTTCTATAA+TGG + chr3_1:69674398-69674417 Msa0371510:intron 25.0%
! AAAAAAAAATTGACAAGTGG+GGG - chr3_1:69674443-69674462 None:intergenic 25.0%
! AAGACAATAGAAATATGAAC+TGG + chr3_1:69674480-69674499 Msa0371510:intron 25.0%
! TACTATTCCATTATCTTTCT+TGG - chr3_1:69674925-69674944 None:intergenic 25.0%
!! TCTTTTGGTAAATGTACAAT+TGG + chr3_1:69674956-69674975 Msa0371510:intron 25.0%
! AATTGAGATGAGCATATATT+TGG - chr3_1:69675499-69675518 None:intergenic 25.0%
!!! TGATTCCTTTTTTATTTGGT+GGG - chr3_1:69675578-69675597 None:intergenic 25.0%
!!! TTGATTCCTTTTTTATTTGG+TGG - chr3_1:69675579-69675598 None:intergenic 25.0%
! AATCAATTGTCGACATAATA+AGG + chr3_1:69675593-69675612 Msa0371510:intron 25.0%
!!! TTACTTTTAAGAGGAAATTC+CGG + chr3_1:69675621-69675640 Msa0371510:intron 25.0%
! TGAATTAGACTATTAATCTC+CGG - chr3_1:69675643-69675662 None:intergenic 25.0%
! GAGATTAATAGTCTAATTCA+TGG + chr3_1:69675643-69675662 Msa0371510:intron 25.0%
! TGAAATAATTTAGGAACAGT+AGG + chr3_1:69675674-69675693 Msa0371510:intron 25.0%
! GTAAGAAAAACTTCACTAAT+AGG + chr3_1:69675714-69675733 Msa0371510:intron 25.0%
! TGCATAATATATACAAGGTT+CGG - chr3_1:69675979-69675998 None:intergenic 25.0%
! GACAATGCATAATATATACA+AGG - chr3_1:69675984-69676003 None:intergenic 25.0%
! ATAAAGCCAAATGTTAGTAT+AGG + chr3_1:69676092-69676111 Msa0371510:intron 25.0%
! TCAATTAGTTGTTATATTGG+AGG + chr3_1:69676121-69676140 Msa0371510:intron 25.0%
! CAATTAGTTGTTATATTGGA+GGG + chr3_1:69676122-69676141 Msa0371510:intron 25.0%
! AATTAGTTGTTATATTGGAG+GGG + chr3_1:69676123-69676142 Msa0371510:intron 25.0%
!!! TCTTTTCCTTATTTTATACG+AGG - chr3_1:69676480-69676499 None:intergenic 25.0%
! AGTTGAATTTAAATCTTGGT+TGG + chr3_1:69676766-69676785 Msa0371510:intron 25.0%
! TGAAACAAACAGAAATTATG+GGG - chr3_1:69677119-69677138 None:intergenic 25.0%
! CTGAAACAAACAGAAATTAT+GGG - chr3_1:69677120-69677139 None:intergenic 25.0%
!! TCTGAAACAAACAGAAATTA+TGG - chr3_1:69677121-69677140 None:intergenic 25.0%
!!! AAAGCCAGTAGTTTTTTTTA+GGG - chr3_1:69677259-69677278 None:intergenic 25.0%
! TTTGTAGTTAAGGATTGTTA+GGG - chr3_1:69677321-69677340 None:intergenic 25.0%
!! TTTTGTAGTTAAGGATTGTT+AGG - chr3_1:69677322-69677341 None:intergenic 25.0%
! CTCAATACACAAAACAAAAT+CGG + chr3_1:69677491-69677510 Msa0371510:CDS 25.0%
! AATTTGATTGATCCTAAGTA+AGG - chr3_1:69677569-69677588 None:intergenic 25.0%
! AAAATGCAAACCAGTTAAAT+GGG + chr3_1:69677738-69677757 Msa0371510:CDS 25.0%
! AAACACTAATGGAAGATTAA+TGG - chr3_1:69678128-69678147 None:intergenic 25.0%
! TTGTCTTTCTTATCTTTCTA+AGG + chr3_1:69678151-69678170 Msa0371510:three_prime_UTR 25.0%
! CATGTTTCTCATGTATAATT+AGG + chr3_1:69678220-69678239 Msa0371510:three_prime_UTR 25.0%
! AAGCATTAATCAACGAATAA+AGG + chr3_1:69678342-69678361 Msa0371510:three_prime_UTR 25.0%
! ATAAAGGTGATAAATTTGCA+TGG + chr3_1:69678358-69678377 Msa0371510:three_prime_UTR 25.0%
! TAAATTTGCATGGATGTTAA+TGG + chr3_1:69678368-69678387 Msa0371510:three_prime_UTR 25.0%
! CGTGAAATTTTACAAAACGA+AGG + chr3_1:69671959-69671978 Msa0371510:five_prime_UTR 30.0%
! AATGAGAAGAAAGTATGGAA+TGG - chr3_1:69672015-69672034 None:intergenic 30.0%
CCAAAAATGAGAAGAAAGTA+TGG - chr3_1:69672020-69672039 None:intergenic 30.0%
! CCATACTTTCTTCTCATTTT+TGG + chr3_1:69672017-69672036 Msa0371510:five_prime_UTR 30.0%
!! AGGTAAATTCTTAGTTCTAG+TGG + chr3_1:69672479-69672498 Msa0371510:intron 30.0%
TTATAACTAGACTGGTACTT+TGG - chr3_1:69672518-69672537 None:intergenic 30.0%
CTGTAAAAATGTTTGCAGTT+TGG + chr3_1:69672571-69672590 Msa0371510:intron 30.0%
AATACAGATTCAAAGTTGAC+AGG + chr3_1:69672659-69672678 Msa0371510:CDS 30.0%
ATACAGATTCAAAGTTGACA+GGG + chr3_1:69672660-69672679 Msa0371510:CDS 30.0%
AATTAATCAACATGTAGCAG+TGG - chr3_1:69672746-69672765 None:intergenic 30.0%
AACAAAAGAAAAACCATTGC+TGG - chr3_1:69672808-69672827 None:intergenic 30.0%
!! TAACTGGTTGGTGTTAAATA+TGG + chr3_1:69672907-69672926 Msa0371510:intron 30.0%
!! TCTAATAGTGGATTTACCAA+AGG + chr3_1:69672997-69673016 Msa0371510:CDS 30.0%
AACTCACCATCATAATGAAA+TGG - chr3_1:69673034-69673053 None:intergenic 30.0%
! AAAAGTTGAAAGTATACCTG+TGG - chr3_1:69673145-69673164 None:intergenic 30.0%
CAACGATGATTTGATGAAAT+GGG - chr3_1:69674384-69674403 None:intergenic 30.0%
!!! AGCTTTATTTTGACGCAAAA+AGG + chr3_1:69674991-69675010 Msa0371510:intron 30.0%
!!! GCTTTATTTTGACGCAAAAA+GGG + chr3_1:69674992-69675011 Msa0371510:intron 30.0%
CTTTCAAATTGCATTGTTGT+AGG - chr3_1:69675192-69675211 None:intergenic 30.0%
CTACAACAATGCAATTTGAA+AGG + chr3_1:69675190-69675209 Msa0371510:CDS 30.0%
!!! CTTATTCTGTAGGTCTTTTT+TGG - chr3_1:69675253-69675272 None:intergenic 30.0%
CAAAAAAGACCTACAGAATA+AGG + chr3_1:69675251-69675270 Msa0371510:CDS 30.0%
ATAGACACACACAAACTAAT+TGG - chr3_1:69675433-69675452 None:intergenic 30.0%
CATCTCAATTATCACCATTT+AGG + chr3_1:69675509-69675528 Msa0371510:intron 30.0%
!!! TTTTTTATTTGGTGGGAACA+AGG - chr3_1:69675571-69675590 None:intergenic 30.0%
TTGTTCCCACCAAATAAAAA+AGG + chr3_1:69675570-69675589 Msa0371510:intron 30.0%
AATTGTCGACATAATAAGGA+AGG + chr3_1:69675597-69675616 Msa0371510:intron 30.0%
!! AAGGAAGGTTTACTTTTAAG+AGG + chr3_1:69675612-69675631 Msa0371510:intron 30.0%
GCATAATATATACAAGGTTC+GGG - chr3_1:69675978-69675997 None:intergenic 30.0%
ACATCTCCTATACTAACATT+TGG - chr3_1:69676101-69676120 None:intergenic 30.0%
ATTAGTTGTTATATTGGAGG+GGG + chr3_1:69676124-69676143 Msa0371510:intron 30.0%
! AATTGTCGCATCAATTGTTT+TGG + chr3_1:69676182-69676201 Msa0371510:intron 30.0%
!!! GCAATTCTGATTGTTTTGAT+TGG + chr3_1:69676227-69676246 Msa0371510:intron 30.0%
TGCCAAATTTATGTCTATAG+AGG + chr3_1:69676572-69676591 Msa0371510:intron 30.0%
GCCAAATTTATGTCTATAGA+GGG + chr3_1:69676573-69676592 Msa0371510:intron 30.0%
TCCCTCTATAGACATAAATT+TGG - chr3_1:69676577-69676596 None:intergenic 30.0%
CATGCATGTATGATAAAATG+GGG - chr3_1:69676625-69676644 None:intergenic 30.0%
GCATGCATGTATGATAAAAT+GGG - chr3_1:69676626-69676645 None:intergenic 30.0%
TGCATGCATGTATGATAAAA+TGG - chr3_1:69676627-69676646 None:intergenic 30.0%
ACAATCTGACTATCCAATTA+TGG + chr3_1:69676805-69676824 Msa0371510:intron 30.0%
CAATCTGACTATCCAATTAT+GGG + chr3_1:69676806-69676825 Msa0371510:intron 30.0%
AATCTGACTATCCAATTATG+GGG + chr3_1:69676807-69676826 Msa0371510:intron 30.0%
AATCTAAATGCATGATGCTT+TGG + chr3_1:69676975-69676994 Msa0371510:intron 30.0%
ATCTAAATGCATGATGCTTT+GGG + chr3_1:69676976-69676995 Msa0371510:intron 30.0%
TGCAATTCAAGGAATGATAT+GGG - chr3_1:69677060-69677079 None:intergenic 30.0%
TCAGAATCACAAACTTATTG+TGG + chr3_1:69677136-69677155 Msa0371510:intron 30.0%
!!! AGTAGTTTTTTTTAGGGTCT+TGG - chr3_1:69677253-69677272 None:intergenic 30.0%
AAGACCCTAAAAAAAACTAC+TGG + chr3_1:69677252-69677271 Msa0371510:CDS 30.0%
!!! GAAAGCCAGTAGTTTTTTTT+AGG - chr3_1:69677260-69677279 None:intergenic 30.0%
!! AAAAACTACTGGCTTTCAAT+TGG + chr3_1:69677263-69677282 Msa0371510:CDS 30.0%
!! CAGAGATTGTTTTGTAGTTA+AGG - chr3_1:69677331-69677350 None:intergenic 30.0%
!!! TTTTGTTTTGTGTATTGAGG+AGG - chr3_1:69677490-69677509 None:intergenic 30.0%
!!! CGATTTTGTTTTGTGTATTG+AGG - chr3_1:69677493-69677512 None:intergenic 30.0%
AAATCGGTAGTTTCACTAAA+TGG + chr3_1:69677507-69677526 Msa0371510:CDS 30.0%
AATCGGTAGTTTCACTAAAT+GGG + chr3_1:69677508-69677527 Msa0371510:CDS 30.0%
GTAGTTGTATTTGGATTAAC+TGG - chr3_1:69677665-69677684 None:intergenic 30.0%
GTTAATCCAAATACAACTAC+CGG + chr3_1:69677665-69677684 Msa0371510:CDS 30.0%
CAAAATGCAAACCAGTTAAA+TGG + chr3_1:69677737-69677756 Msa0371510:CDS 30.0%
! ATTTGCATGGACATGATTTT+TGG + chr3_1:69677786-69677805 Msa0371510:CDS 30.0%
! TTTGCATGGACATGATTTTT+GGG + chr3_1:69677787-69677806 Msa0371510:CDS 30.0%
ACTGCAGTTATATTTCCATA+TGG + chr3_1:69677889-69677908 Msa0371510:three_prime_UTR 30.0%
CAGTTATATTTCCATATGGT+TGG + chr3_1:69677893-69677912 Msa0371510:three_prime_UTR 30.0%
ATTGAACCACATTTGCATAT+GGG + chr3_1:69677970-69677989 Msa0371510:three_prime_UTR 30.0%
! GATGTCATTTAGGAATATCT+AGG - chr3_1:69678073-69678092 None:intergenic 30.0%
!! CTCAATTTTGGATGTCATTT+AGG - chr3_1:69678083-69678102 None:intergenic 30.0%
ACTAATGGAAGATTAATGGT+TGG - chr3_1:69678124-69678143 None:intergenic 30.0%
!!! GGGCACTTTTGTCATTTTAT+CGG + chr3_1:69671980-69671999 Msa0371510:five_prime_UTR 35.0%
!! ACTTTCTTCTCATTTTTGGG+CGG + chr3_1:69672021-69672040 Msa0371510:five_prime_UTR 35.0%
!!! AAGGAAAGATTGTTTTAGGC+GGG - chr3_1:69672066-69672085 None:intergenic 35.0%
!!! CAAGGAAAGATTGTTTTAGG+CGG - chr3_1:69672067-69672086 None:intergenic 35.0%
! CACCAAGGAAAGATTGTTTT+AGG - chr3_1:69672070-69672089 None:intergenic 35.0%
AATATGTTCCTTCCATCGTT+TGG - chr3_1:69672106-69672125 None:intergenic 35.0%
! AGCTTTTGCTCAGAGATTTA+GGG - chr3_1:69672188-69672207 None:intergenic 35.0%
! TAGCTTTTGCTCAGAGATTT+AGG - chr3_1:69672189-69672208 None:intergenic 35.0%
! TGCTGAAAGCAGTTTTTGTT+TGG + chr3_1:69672227-69672246 Msa0371510:CDS 35.0%
!!! CAGTTTTTGTTTGGTGCATA+TGG + chr3_1:69672236-69672255 Msa0371510:CDS 35.0%
!! TTTGTTTGGTGCATATGGTT+AGG + chr3_1:69672241-69672260 Msa0371510:CDS 35.0%
!! TTGTTTGGTGCATATGGTTA+GGG + chr3_1:69672242-69672261 Msa0371510:CDS 35.0%
ATACAAAAAGCCAGATTGTG+TGG + chr3_1:69672321-69672340 Msa0371510:CDS 35.0%
GAATAACAGTTCCTTCTGTA+TGG - chr3_1:69672441-69672460 None:intergenic 35.0%
CTGTATTGAAAAGTTTCTCC+TGG - chr3_1:69672646-69672665 None:intergenic 35.0%
CCATGATAGAAATATGTACC+AGG - chr3_1:69672938-69672957 None:intergenic 35.0%
! CCTGGTACATATTTCTATCA+TGG + chr3_1:69672935-69672954 Msa0371510:CDS 35.0%
AGAGAGCCATTTCATTATGA+TGG + chr3_1:69673025-69673044 Msa0371510:CDS 35.0%
GGATGCTCTTAGGAATTATT+AGG - chr3_1:69673897-69673916 None:intergenic 35.0%
TTGTTAGGAAACTACCATTG+TGG - chr3_1:69673918-69673937 None:intergenic 35.0%
ACAATGGTAGTTTCCTAACA+AGG + chr3_1:69673917-69673936 Msa0371510:intron 35.0%
AAATAAGTGATGTGTCACGT+GGG - chr3_1:69673958-69673977 None:intergenic 35.0%
TAAATAAGTGATGTGTCACG+TGG - chr3_1:69673959-69673978 None:intergenic 35.0%
CCTTGTTAGTGTATTGTCAT+TGG - chr3_1:69674022-69674041 None:intergenic 35.0%
CCAATGACAATACACTAACA+AGG + chr3_1:69674019-69674038 Msa0371510:intron 35.0%
AAAGAACGGGCAACTATATA+AGG - chr3_1:69674241-69674260 None:intergenic 35.0%
TATAGTTGCCCGTTCTTTAA+CGG + chr3_1:69674243-69674262 Msa0371510:intron 35.0%
! CTCAATTTTTCTTCCTCCAA+TGG + chr3_1:69674269-69674288 Msa0371510:intron 35.0%
! AATTTTTCTTCCTCCAATGG+AGG + chr3_1:69674272-69674291 Msa0371510:intron 35.0%
! ATTTTTCTTCCTCCAATGGA+GGG + chr3_1:69674273-69674292 Msa0371510:intron 35.0%
! ACTATTAGAGCATCTCCAAT+GGG - chr3_1:69674334-69674353 None:intergenic 35.0%
CCAACGATGATTTGATGAAA+TGG - chr3_1:69674385-69674404 None:intergenic 35.0%
CCATTTCATCAAATCATCGT+TGG + chr3_1:69674382-69674401 Msa0371510:intron 35.0%
TTTAATCATGGACAGTACCA+TGG + chr3_1:69674738-69674757 Msa0371510:intron 35.0%
TTAATCATGGACAGTACCAT+GGG + chr3_1:69674739-69674758 Msa0371510:intron 35.0%
CTTGTGTGACATTAATGTCA+CGG + chr3_1:69674768-69674787 Msa0371510:intron 35.0%
CCATTATCTTTCTTGGTACT+GGG - chr3_1:69674918-69674937 None:intergenic 35.0%
TCCATTATCTTTCTTGGTAC+TGG - chr3_1:69674919-69674938 None:intergenic 35.0%
!!! TTTTAGAGCTTGCTCATCAA+TGG + chr3_1:69675118-69675137 Msa0371510:intron 35.0%
CAAATTGCATTGTTGTAGGT+TGG - chr3_1:69675188-69675207 None:intergenic 35.0%
CAACAATGCAATTTGAAAGG+TGG + chr3_1:69675193-69675212 Msa0371510:CDS 35.0%
ACTAGCAATCCTTATTCTGT+AGG - chr3_1:69675263-69675282 None:intergenic 35.0%
TAGGAGAAAACTCACTGAAA+TGG - chr3_1:69675314-69675333 None:intergenic 35.0%
GATGAGCATATATTTGGATG+TGG - chr3_1:69675493-69675512 None:intergenic 35.0%
TTATGAGACAGCTACCTAAA+TGG - chr3_1:69675526-69675545 None:intergenic 35.0%
CACTAATAGGTCAAAGAAGT+TGG + chr3_1:69675727-69675746 Msa0371510:intron 35.0%
CTACGATTCTGCACATTAAA+CGG - chr3_1:69675820-69675839 None:intergenic 35.0%
!!! ATAGTTTTTTTTTGGTGGCC+AGG + chr3_1:69675945-69675964 Msa0371510:intron 35.0%
!!! TAGTTTTTTTTTGGTGGCCA+GGG + chr3_1:69675946-69675965 Msa0371510:intron 35.0%
GAGATTTGAATCACATGAGT+GGG + chr3_1:69676374-69676393 Msa0371510:intron 35.0%
AGATTTGAATCACATGAGTG+GGG + chr3_1:69676375-69676394 Msa0371510:intron 35.0%
!!! TTCGTCTTTTTCAAGTGGTT+TGG - chr3_1:69676440-69676459 None:intergenic 35.0%
AAACCACTTGAAAAAGACGA+AGG + chr3_1:69676439-69676458 Msa0371510:intron 35.0%
TGGAGTCCTCGTATAAAATA+AGG + chr3_1:69676471-69676490 Msa0371510:intron 35.0%
TAACTGAGATGCATAGTGAT+TGG + chr3_1:69676509-69676528 Msa0371510:intron 35.0%
ATCTGACTATCCAATTATGG+GGG + chr3_1:69676808-69676827 Msa0371510:intron 35.0%
CATGTTGATCTAACAAACCA+TGG - chr3_1:69676862-69676881 None:intergenic 35.0%
GAAATGCAATAATCAGCAGT+AGG - chr3_1:69677037-69677056 None:intergenic 35.0%
GCAATTCAAGGAATGATATG+GGG - chr3_1:69677059-69677078 None:intergenic 35.0%
GTGCAATTCAAGGAATGATA+TGG - chr3_1:69677061-69677080 None:intergenic 35.0%
TCAATCTATGGTGCAATTCA+AGG - chr3_1:69677071-69677090 None:intergenic 35.0%
GAATCACAAACTTATTGTGG+TGG + chr3_1:69677139-69677158 Msa0371510:intron 35.0%
! TGGTAATGTTGGAAAAACTG+AGG - chr3_1:69677354-69677373 None:intergenic 35.0%
TAATCCATTGGAAATCTCTC+TGG - chr3_1:69677626-69677645 None:intergenic 35.0%
TTACACGTTTCAGTTGAATG+AGG + chr3_1:69677697-69677716 Msa0371510:CDS 35.0%
! ATGGTAGTGAAATTCATCCA+TGG + chr3_1:69677762-69677781 Msa0371510:CDS 35.0%
!!! TGGACATGATTTTTGGGTTT+TGG + chr3_1:69677793-69677812 Msa0371510:CDS 35.0%
!!! GGACATGATTTTTGGGTTTT+GGG + chr3_1:69677794-69677813 Msa0371510:CDS 35.0%
!!! GATTTTTGGGTTTTGGGATA+TGG + chr3_1:69677800-69677819 Msa0371510:CDS 35.0%
! AAACTTTTCTCATCAACACC+TGG - chr3_1:69677842-69677861 None:intergenic 35.0%
TTGGACTGCATTAAGGTTTA+AGG + chr3_1:69677912-69677931 Msa0371510:three_prime_UTR 35.0%
AATGTGGTTCAATGTGACAA+TGG - chr3_1:69677963-69677982 None:intergenic 35.0%
CATTGAACCACATTTGCATA+TGG + chr3_1:69677969-69677988 Msa0371510:three_prime_UTR 35.0%
!!! AATGGGTGTTATTTTTGCTG+AGG + chr3_1:69677993-69678012 Msa0371510:three_prime_UTR 35.0%
! TCTAAGGTATCATCACTTCA+TGG + chr3_1:69678167-69678186 Msa0371510:three_prime_UTR 35.0%
!!! CGTGAGTAGTGTTATTTTGC+AGG + chr3_1:69671921-69671940 Msa0371510:five_prime_UTR 40.0%
CGCCTAAAACAATCTTTCCT+TGG + chr3_1:69672065-69672084 Msa0371510:five_prime_UTR 40.0%
TTGTCAGAGAAACCAAACGA+TGG + chr3_1:69672091-69672110 Msa0371510:five_prime_UTR 40.0%
! CAGGATGGAAAGCATAAAGA+CGG - chr3_1:69672141-69672160 None:intergenic 40.0%
CTCATTCCATGGAAACAAAC+AGG + chr3_1:69672162-69672181 Msa0371510:five_prime_UTR 40.0%
! CATGTTGTGATGGGAATCAA+TGG + chr3_1:69672346-69672365 Msa0371510:CDS 40.0%
CAGAAGGAACTGTTATTCAC+TGG + chr3_1:69672443-69672462 Msa0371510:CDS 40.0%
! TTTGCAGTTTGGAACTCCTT+GGG + chr3_1:69672582-69672601 Msa0371510:intron 40.0%
TCTCAGTGTGCTATAAATCC+AGG + chr3_1:69672625-69672644 Msa0371510:CDS 40.0%
AGCAGTGGAAACAGAAAAAG+AGG - chr3_1:69672731-69672750 None:intergenic 40.0%
! ATCACATTTTTGACCCCAAG+TGG + chr3_1:69672768-69672787 Msa0371510:intron 40.0%
! ATGGACATATATGCCACTTG+GGG - chr3_1:69672784-69672803 None:intergenic 40.0%
! CATGGACATATATGCCACTT+GGG - chr3_1:69672785-69672804 None:intergenic 40.0%
ATATATGTCCATGCCAGCAA+TGG + chr3_1:69672792-69672811 Msa0371510:intron 40.0%
AAGAAAAACCATTGCTGGCA+TGG - chr3_1:69672803-69672822 None:intergenic 40.0%
GCTGTATGGTTCTCTAATAG+TGG + chr3_1:69672985-69673004 Msa0371510:CDS 40.0%
AATGGCTCTCTTTGTTCCTT+TGG - chr3_1:69673016-69673035 None:intergenic 40.0%
TTCACCAATCCATCTCATTG+GGG - chr3_1:69673122-69673141 None:intergenic 40.0%
GTTCACCAATCCATCTCATT+GGG - chr3_1:69673123-69673142 None:intergenic 40.0%
AAGCACTAATGCTCATATGG+TGG - chr3_1:69673730-69673749 None:intergenic 40.0%
!! GGAAAGCACTAATGCTCATA+TGG - chr3_1:69673733-69673752 None:intergenic 40.0%
GAAAACAACTCACACTCATG+TGG + chr3_1:69673810-69673829 Msa0371510:intron 40.0%
!! ATTCCTAAGAGCATCCACAA+TGG + chr3_1:69673901-69673920 Msa0371510:intron 40.0%
CCATTTAAGGAGTCCTTGTT+AGG - chr3_1:69673933-69673952 None:intergenic 40.0%
CCTAACAAGGACTCCTTAAA+TGG + chr3_1:69673930-69673949 Msa0371510:intron 40.0%
AATAAGTGATGTGTCACGTG+GGG - chr3_1:69673957-69673976 None:intergenic 40.0%
GGAGTCATTGAGTCCTTAAT+AGG - chr3_1:69674001-69674020 None:intergenic 40.0%
ATAGTTGCCCGTTCTTTAAC+GGG + chr3_1:69674244-69674263 Msa0371510:intron 40.0%
ATTGAGTCCCCGTTAAAGAA+CGG - chr3_1:69674255-69674274 None:intergenic 40.0%
AATGGGGTCCTTACTTAACA+AGG - chr3_1:69674317-69674336 None:intergenic 40.0%
TTGTTAAGTAAGGACCCCAT+TGG + chr3_1:69674316-69674335 Msa0371510:intron 40.0%
! CTATTAGAGCATCTCCAATG+GGG - chr3_1:69674333-69674352 None:intergenic 40.0%
! CACTATTAGAGCATCTCCAA+TGG - chr3_1:69674335-69674354 None:intergenic 40.0%
CATTGGAGATGCTCTAATAG+TGG + chr3_1:69674333-69674352 Msa0371510:intron 40.0%
GCATAGAAAACCTTGCAACT+AGG + chr3_1:69674355-69674374 Msa0371510:intron 40.0%
TAGAAAACCTTGCAACTAGG+TGG + chr3_1:69674358-69674377 Msa0371510:intron 40.0%
AAAAAATTGACAAGTGGGGG+TGG - chr3_1:69674440-69674459 None:intergenic 40.0%
TAATCATGGACAGTACCATG+GGG + chr3_1:69674740-69674759 Msa0371510:intron 40.0%
TGTCACGGTGACATTAAATC+TGG + chr3_1:69674783-69674802 Msa0371510:intron 40.0%
GTCACGGTGACATTAAATCT+GGG + chr3_1:69674784-69674803 Msa0371510:intron 40.0%
ATTAAATCTGGGCCACACAT+TGG + chr3_1:69674795-69674814 Msa0371510:intron 40.0%
TTAAATCTGGGCCACACATT+GGG + chr3_1:69674796-69674815 Msa0371510:intron 40.0%
ATCTAATGTCACCCAATGTG+TGG - chr3_1:69674810-69674829 None:intergenic 40.0%
GTGACATTAGATGTGTTGTG+TGG + chr3_1:69674818-69674837 Msa0371510:intron 40.0%
ATTGCCATTGTCATTGCATC+TGG - chr3_1:69674845-69674864 None:intergenic 40.0%
! TTATCTTTCTTGGTACTGGG+TGG - chr3_1:69674915-69674934 None:intergenic 40.0%
CCCAGTACCAAGAAAGATAA+TGG + chr3_1:69674915-69674934 Msa0371510:intron 40.0%
TAAATGTACAATTGGCCACG+CGG + chr3_1:69674964-69674983 Msa0371510:intron 40.0%
AAAATAAAGCTAACACCGCG+TGG - chr3_1:69674982-69675001 None:intergenic 40.0%
TGTTCCCTAGCAGCTAAATA+TGG + chr3_1:69675157-69675176 Msa0371510:CDS 40.0%
GTTCCCTAGCAGCTAAATAT+GGG + chr3_1:69675158-69675177 Msa0371510:CDS 40.0%
!! ATATGTAGTGGGTCATAGCT+AGG - chr3_1:69675333-69675352 None:intergenic 40.0%
CGTTTAATGTGCAGAATCGT+AGG + chr3_1:69675818-69675837 Msa0371510:intron 40.0%
GGAGATTTGAATCACATGAG+TGG + chr3_1:69676373-69676392 Msa0371510:intron 40.0%
TGAGATGCATAGTGATTGGT+CGG + chr3_1:69676513-69676532 Msa0371510:intron 40.0%
!! TGTTGTAAGGAGTACTGAGT+AGG - chr3_1:69677228-69677247 None:intergenic 40.0%
!! TGGCTTTCAATTGGTGTTAG+AGG + chr3_1:69677272-69677291 Msa0371510:CDS 40.0%
TTAAGGATTGTTAGGGCTTG+TGG - chr3_1:69677314-69677333 None:intergenic 40.0%
TGTTCGGTATCGTTCCATAA+GGG - chr3_1:69677389-69677408 None:intergenic 40.0%
! TGTGAATGCTTTGCTGTGTT+CGG - chr3_1:69677405-69677424 None:intergenic 40.0%
GATTGATCCTAAGTAAGGTG+TGG - chr3_1:69677564-69677583 None:intergenic 40.0%
CCAAATACAACTACCGGTAA+CGG + chr3_1:69677671-69677690 Msa0371510:CDS 40.0%
AAACGTGTAAACACCGTTAC+CGG - chr3_1:69677687-69677706 None:intergenic 40.0%
GCAAACCAGTTAAATGGGAA+TGG + chr3_1:69677743-69677762 Msa0371510:CDS 40.0%
CACTACCATTCCCATTTAAC+TGG - chr3_1:69677751-69677770 None:intergenic 40.0%
ATTCATCCATGGCATTTGCA+TGG + chr3_1:69677773-69677792 Msa0371510:CDS 40.0%
AATTTGAACGTGCACCTTTG+AGG + chr3_1:69677863-69677882 Msa0371510:CDS 40.0%
ATAACTGCAGTGTTCCTCAA+AGG - chr3_1:69677880-69677899 None:intergenic 40.0%
CTTAATGCAGTCCAACCATA+TGG - chr3_1:69677907-69677926 None:intergenic 40.0%
CATATGGTTGGACTGCATTA+AGG + chr3_1:69677905-69677924 Msa0371510:three_prime_UTR 40.0%
ACCACATTTGCATATGGGAA+TGG + chr3_1:69677975-69677994 Msa0371510:three_prime_UTR 40.0%
CCACATTTGCATATGGGAAT+GGG + chr3_1:69677976-69677995 Msa0371510:three_prime_UTR 40.0%
CTGAGGCTGTTCATAAAGTT+AGG + chr3_1:69678010-69678029 Msa0371510:three_prime_UTR 40.0%
CCACACTTAAGAGCTTCTTT+AGG - chr3_1:69678042-69678061 None:intergenic 40.0%
CCTAAAGAAGCTCTTAAGTG+TGG + chr3_1:69678039-69678058 Msa0371510:three_prime_UTR 40.0%
!!! GGCGGAAAGCTTTTTTACGT+GGG + chr3_1:69672039-69672058 Msa0371510:five_prime_UTR 45.0%
CAGAGAAACCAAACGATGGA+AGG + chr3_1:69672095-69672114 Msa0371510:five_prime_UTR 45.0%
CGTCTTTATGCTTTCCATCC+TGG + chr3_1:69672139-69672158 Msa0371510:five_prime_UTR 45.0%
TTGTTTCCATGGAATGAGCC+AGG - chr3_1:69672160-69672179 None:intergenic 45.0%
TTAGGGCCTGTTTGTTTCCA+TGG - chr3_1:69672171-69672190 None:intergenic 45.0%
ACAACATGCTCCACACAATC+TGG - chr3_1:69672334-69672353 None:intergenic 45.0%
TTGTGTGGAGCATGTTGTGA+TGG + chr3_1:69672336-69672355 Msa0371510:CDS 45.0%
TGTGTGGAGCATGTTGTGAT+GGG + chr3_1:69672337-69672356 Msa0371510:CDS 45.0%
TAATAGTTGGGCCTGGAAAC+TGG - chr3_1:69672372-69672391 None:intergenic 45.0%
! TCAGCTTTAATAGTTGGGCC+TGG - chr3_1:69672379-69672398 None:intergenic 45.0%
! GTTGGTGAGGTCAATGACAA+GGG - chr3_1:69672413-69672432 None:intergenic 45.0%
! TGTTGGTGAGGTCAATGACA+AGG - chr3_1:69672414-69672433 None:intergenic 45.0%
ACCAACAAGCTCCATACAGA+AGG + chr3_1:69672427-69672446 Msa0371510:CDS 45.0%
TCCTTCTGTATGGAGCTTGT+TGG - chr3_1:69672431-69672450 None:intergenic 45.0%
GGAACTGTTATTCACTGGCA+TGG + chr3_1:69672448-69672467 Msa0371510:CDS 45.0%
! GTTTGCAGTTTGGAACTCCT+TGG + chr3_1:69672581-69672600 Msa0371510:intron 45.0%
GCATGGACATATATGCCACT+TGG - chr3_1:69672786-69672805 None:intergenic 45.0%
GTGTTAAATATGGTGCAGCC+TGG + chr3_1:69672917-69672936 Msa0371510:intron 45.0%
TTTGGTATGCAAAGAGCAGC+AGG + chr3_1:69672962-69672981 Msa0371510:CDS 45.0%
TTGGTATGCAAAGAGCAGCA+GGG + chr3_1:69672963-69672982 Msa0371510:CDS 45.0%
ATCTGCTCCTTAGTGATCTG+TGG + chr3_1:69673056-69673075 Msa0371510:CDS 45.0%
TTGTGTGCCACAGATCACTA+AGG - chr3_1:69673066-69673085 None:intergenic 45.0%
CACAAGCTCACATGAACAAG+AGG + chr3_1:69673081-69673100 Msa0371510:CDS 45.0%
AGCTCACATGAACAAGAGGT+TGG + chr3_1:69673085-69673104 Msa0371510:CDS 45.0%
GGTTCACCAATCCATCTCAT+TGG - chr3_1:69673124-69673143 None:intergenic 45.0%
CTACCATTGTGGATGCTCTT+AGG - chr3_1:69673907-69673926 None:intergenic 45.0%
TCTCTCTCCTGGGTAACTAA+CGG - chr3_1:69674214-69674233 None:intergenic 45.0%
TTAGTTACCCAGGAGAGAGA+GGG + chr3_1:69674214-69674233 Msa0371510:intron 45.0%
TAGTTGCCCGTTCTTTAACG+GGG + chr3_1:69674245-69674264 Msa0371510:intron 45.0%
TTGAGTCCCCGTTAAAGAAC+GGG - chr3_1:69674254-69674273 None:intergenic 45.0%
GGAGTGGTCCTTGTTAAGTA+AGG + chr3_1:69674306-69674325 Msa0371510:intron 45.0%
GTCACACAAGTATTTCCCCA+TGG - chr3_1:69674758-69674777 None:intergenic 45.0%
TGGTCCAGATGCAATGACAA+TGG + chr3_1:69674838-69674857 Msa0371510:intron 45.0%
GCAATGACAATGGCAATGTG+TGG + chr3_1:69674848-69674867 Msa0371510:intron 45.0%
AATGTGTGGTCCAGATGCAA+TGG + chr3_1:69674862-69674881 Msa0371510:intron 45.0%
GCTCCCATATTTAGCTGCTA+GGG - chr3_1:69675164-69675183 None:intergenic 45.0%
TGCTCCCATATTTAGCTGCT+AGG - chr3_1:69675165-69675184 None:intergenic 45.0%
TGGCTCCACATGAAGAATCT+GGG - chr3_1:69675233-69675252 None:intergenic 45.0%
TTGGCTCCACATGAAGAATC+TGG - chr3_1:69675234-69675253 None:intergenic 45.0%
GATTGCTAGTACTACGTCCT+TGG + chr3_1:69675273-69675292 Msa0371510:CDS 45.0%
CATTAAACGGCTACTTGAGC+TGG - chr3_1:69675807-69675826 None:intergenic 45.0%
CCTTGTGAGTTAAGCTCAGT+TGG - chr3_1:69676011-69676030 None:intergenic 45.0%
CCAACTGAGCTTAACTCACA+AGG + chr3_1:69676008-69676027 Msa0371510:intron 45.0%
!!! GGTCCTTCGTCTTTTTCAAG+TGG - chr3_1:69676445-69676464 None:intergenic 45.0%
AAAGACGAAGGACCACGTTA+TGG + chr3_1:69676451-69676470 Msa0371510:intron 45.0%
TATACGAGGACTCCATAACG+TGG - chr3_1:69676466-69676485 None:intergenic 45.0%
TAGAGGGAATCACATCTTGC+AGG + chr3_1:69676589-69676608 Msa0371510:intron 45.0%
TCCAATTATGGGGGCCAAAT+TGG + chr3_1:69676817-69676836 Msa0371510:intron 45.0%
TCCAATTTGGCCCCCATAAT+TGG - chr3_1:69676821-69676840 None:intergenic 45.0%
TTATGGGGGCCAAATTGGAT+TGG + chr3_1:69676822-69676841 Msa0371510:intron 45.0%
TATGGGGGCCAAATTGGATT+GGG + chr3_1:69676823-69676842 Msa0371510:intron 45.0%
TGAGCACACCCAATCCAATT+TGG - chr3_1:69676834-69676853 None:intergenic 45.0%
! CTTATTGTGGTGGAAGCAGA+TGG + chr3_1:69677149-69677168 Msa0371510:CDS 45.0%
CGATGTCATCAACTGCGAAT+GGG - chr3_1:69677187-69677206 None:intergenic 45.0%
TCGATGTCATCAACTGCGAA+TGG - chr3_1:69677188-69677207 None:intergenic 45.0%
GATGACATCGACATCTACTC+AGG + chr3_1:69677197-69677216 Msa0371510:CDS 45.0%
TAGGGTCTTGGTCTGTTGTA+AGG - chr3_1:69677241-69677260 None:intergenic 45.0%
GTGTTCGGTATCGTTCCATA+AGG - chr3_1:69677390-69677409 None:intergenic 45.0%
TATTGAGGAGGAGAATCGTG+CGG - chr3_1:69677478-69677497 None:intergenic 45.0%
TTGCCAACCACACCTTACTT+AGG + chr3_1:69677554-69677573 Msa0371510:CDS 45.0%
GATCCTAAGTAAGGTGTGGT+TGG - chr3_1:69677560-69677579 None:intergenic 45.0%
ATTGGAAATCTCTCTGGTGG+TGG - chr3_1:69677620-69677639 None:intergenic 45.0%
ACCACCAGAGAGATTTCCAA+TGG + chr3_1:69677619-69677638 Msa0371510:CDS 45.0%
TCCATTGGAAATCTCTCTGG+TGG - chr3_1:69677623-69677642 None:intergenic 45.0%
CCGTTACCGGTAGTTGTATT+TGG - chr3_1:69677674-69677693 None:intergenic 45.0%
TCATGTCCATGCAAATGCCA+TGG - chr3_1:69677782-69677801 None:intergenic 45.0%
!!! TGGGTTTTGGGATATGGTGA+AGG + chr3_1:69677806-69677825 Msa0371510:CDS 45.0%
!!! GGGTTTTGGGATATGGTGAA+GGG + chr3_1:69677807-69677826 Msa0371510:CDS 45.0%
! AGGTTTAAGGCAGATAACCC+TGG + chr3_1:69677925-69677944 Msa0371510:three_prime_UTR 45.0%
AATGGAATGCCCAAACACCA+GGG - chr3_1:69677945-69677964 None:intergenic 45.0%
CCCATTCCCATATGCAAATG+TGG - chr3_1:69677979-69677998 None:intergenic 45.0%
!! AAATTTCAAAAATAAAATAA+AGG + chr3_1:69674677-69674696 Msa0371510:intron 5.0%
!! TTAAAATTATAATTTAATCA+TGG + chr3_1:69674726-69674745 Msa0371510:intron 5.0%
!! TTAAAAATCATTAATTAATA+TGG + chr3_1:69676205-69676224 Msa0371510:intron 5.0%
!!! GGGCGGAAAGCTTTTTTACG+TGG + chr3_1:69672038-69672057 Msa0371510:five_prime_UTR 50.0%
GGTTTCTCTGACAAGCACCA+AGG - chr3_1:69672085-69672104 None:intergenic 50.0%
TTCCATCCTGGCTCATTCCA+TGG + chr3_1:69672151-69672170 Msa0371510:five_prime_UTR 50.0%
TTCCATGGAATGAGCCAGGA+TGG - chr3_1:69672156-69672175 None:intergenic 50.0%
GGAATCAATGGCCAGTTTCC+AGG + chr3_1:69672358-69672377 Msa0371510:CDS 50.0%
!! CTGTATGGAGCTTGTTGGTG+AGG - chr3_1:69672426-69672445 None:intergenic 50.0%
TCACTGGCATGGAATCAGAC+AGG + chr3_1:69672459-69672478 Msa0371510:CDS 50.0%
! TTTGGAACTCCTTGGGCTGA+TGG + chr3_1:69672589-69672608 Msa0371510:CDS 50.0%
ATCTCATTGGGGCTGAAGAG+AGG - chr3_1:69673111-69673130 None:intergenic 50.0%
TCTCTTCAGCCCCAATGAGA+TGG + chr3_1:69673110-69673129 Msa0371510:CDS 50.0%
TCAGCCCCAATGAGATGGAT+TGG + chr3_1:69673115-69673134 Msa0371510:CDS 50.0%
!! GAGATGGATTGGTGAACCAC+AGG + chr3_1:69673126-69673145 Msa0371510:CDS 50.0%
TGTCACGTGGGGTCCATTTA+AGG - chr3_1:69673946-69673965 None:intergenic 50.0%
CTCTCTCCTGGGTAACTAAC+GGG - chr3_1:69674213-69674232 None:intergenic 50.0%
GTTAGTTACCCAGGAGAGAG+AGG + chr3_1:69674213-69674232 Msa0371510:intron 50.0%
ATAAGGACCCTCTCTCTCCT+GGG - chr3_1:69674224-69674243 None:intergenic 50.0%
TATAAGGACCCTCTCTCTCC+TGG - chr3_1:69674225-69674244 None:intergenic 50.0%
TGTTAAGGACCCTCCATTGG+AGG - chr3_1:69674285-69674304 None:intergenic 50.0%
TCCAATGGAGGGTCCTTAAC+AGG + chr3_1:69674284-69674303 Msa0371510:intron 50.0%
CCAATGGAGGGTCCTTAACA+GGG + chr3_1:69674285-69674304 Msa0371510:intron 50.0%
ACAAGGACCACTCCCTGTTA+AGG - chr3_1:69674300-69674319 None:intergenic 50.0%
AAATGGGCCACCTAGTTGCA+AGG - chr3_1:69674368-69674387 None:intergenic 50.0%
! AGCTTGCTCATCAATGGACG+AGG + chr3_1:69675124-69675143 Msa0371510:CDS 50.0%
TGCACCCCAGATTCTTCATG+TGG + chr3_1:69675225-69675244 Msa0371510:CDS 50.0%
GGCTCCACATGAAGAATCTG+GGG - chr3_1:69675232-69675251 None:intergenic 50.0%
GTCCTTGGCTTCTCTCAACT+TGG + chr3_1:69675288-69675307 Msa0371510:CDS 50.0%
! GCATAGTGATTGGTCGGAGT+TGG + chr3_1:69676519-69676538 Msa0371510:intron 50.0%
GGAGTTGGCATGTGAAACAC+TGG + chr3_1:69676534-69676553 Msa0371510:intron 50.0%
GGTGTTAGAGGCAGAAAACC+AGG + chr3_1:69677284-69677303 Msa0371510:CDS 50.0%
!! GTGACTGGTGGTGGTAATGT+TGG - chr3_1:69677365-69677384 None:intergenic 50.0%
! TTCCATAAGGGTGTGACTGG+TGG - chr3_1:69677377-69677396 None:intergenic 50.0%
! TCGTTCCATAAGGGTGTGAC+TGG - chr3_1:69677380-69677399 None:intergenic 50.0%
! TGGCTGTGGAGTTCCCATTT+TGG - chr3_1:69677441-69677460 None:intergenic 50.0%
ATCGTGCGGTGTGAGGATTT+CGG - chr3_1:69677464-69677483 None:intergenic 50.0%
GGTGAAGGGAGATTTAGACC+AGG + chr3_1:69677821-69677840 Msa0371510:CDS 50.0%
AGGCAGATAACCCTGGTGTT+TGG + chr3_1:69677932-69677951 Msa0371510:three_prime_UTR 50.0%
GGCAGATAACCCTGGTGTTT+GGG + chr3_1:69677933-69677952 Msa0371510:three_prime_UTR 50.0%
CAATGGAATGCCCAAACACC+AGG - chr3_1:69677946-69677965 None:intergenic 50.0%
ATACTATTCACGCGGGGAGT+TGG - chr3_1:69678254-69678273 None:intergenic 50.0%
TCCCCGCGTGAATAGTATGT+AGG + chr3_1:69678256-69678275 Msa0371510:three_prime_UTR 50.0%
CCCTACATACTATTCACGCG+GGG - chr3_1:69678260-69678279 None:intergenic 50.0%
CCCCGCGTGAATAGTATGTA+GGG + chr3_1:69678257-69678276 Msa0371510:three_prime_UTR 50.0%
CCCCTACATACTATTCACGC+GGG - chr3_1:69678261-69678280 None:intergenic 50.0%
CCCGCGTGAATAGTATGTAG+GGG + chr3_1:69678258-69678277 Msa0371510:three_prime_UTR 50.0%
CCCCCTACATACTATTCACG+CGG - chr3_1:69678262-69678281 None:intergenic 50.0%
CCGCGTGAATAGTATGTAGG+GGG + chr3_1:69678259-69678278 Msa0371510:three_prime_UTR 50.0%
CAAAGAGCAGCAGGGCTGTA+TGG + chr3_1:69672971-69672990 Msa0371510:CDS 55.0%
CCCTGTTAAGGACCCTCCAT+TGG - chr3_1:69674288-69674307 None:intergenic 55.0%
GTGGTCCAGATGCAATGGCA+CGG + chr3_1:69674867-69674886 Msa0371510:intron 55.0%
! TGTCACCGTGCCATTGCATC+TGG - chr3_1:69674875-69674894 None:intergenic 55.0%
! CTTGGTACTGGGTGGCACTT+TGG - chr3_1:69674907-69674926 None:intergenic 55.0%
! GGCCAAGTTGAGAGAAGCCA+AGG - chr3_1:69675293-69675312 None:intergenic 55.0%
! TGGGTGTGCTCAAAGCACCA+TGG + chr3_1:69676842-69676861 Msa0371510:intron 55.0%
! CATAAGGGTGTGACTGGTGG+TGG - chr3_1:69677374-69677393 None:intergenic 55.0%
CACCACCAGTCACACCCTTA+TGG + chr3_1:69677372-69677391 Msa0371510:CDS 55.0%
TGTGAGGATTTCGGTGGCTG+TGG - chr3_1:69677455-69677474 None:intergenic 55.0%
GCAGCAGTTCCATCAGCCCA+AGG - chr3_1:69672601-69672620 None:intergenic 60.0%
GTGGGACCCGTTAGTTACCC+AGG + chr3_1:69674204-69674223 Msa0371510:intron 60.0%
GGAGGGTCCTTAACAGGGAG+TGG + chr3_1:69674290-69674309 Msa0371510:intron 60.0%
! CAAGGTTCGGGTTCGAACCC+TGG - chr3_1:69675966-69675985 None:intergenic 60.0%
GTTAGGGCTTGTGGTGTGCC+TGG - chr3_1:69677305-69677324 None:intergenic 60.0%
GTGCGGTGTGAGGATTTCGG+TGG - chr3_1:69677461-69677480 None:intergenic 60.0%
GAGGAGAATCGTGCGGTGTG+AGG - chr3_1:69677471-69677490 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 69671913 69678423 69671913 ID=Msa0371510;Name=Msa0371510
chr3_1 mRNA 69671913 69678423 69671913 ID=Msa0371510-mRNA-1;Parent=Msa0371510;Name=Msa0371510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=307|1|1|1|1|1|5|540|501
chr3_1 exon 69671913 69672480 69671913 ID=Msa0371510-mRNA-1:exon:14883;Parent=Msa0371510-mRNA-1
chr3_1 exon 69672589 69672681 69672589 ID=Msa0371510-mRNA-1:exon:14884;Parent=Msa0371510-mRNA-1
chr3_1 exon 69672935 69673147 69672935 ID=Msa0371510-mRNA-1:exon:14885;Parent=Msa0371510-mRNA-1
chr3_1 exon 69675124 69675318 69675124 ID=Msa0371510-mRNA-1:exon:14886;Parent=Msa0371510-mRNA-1
chr3_1 exon 69677140 69678423 69677140 ID=Msa0371510-mRNA-1:exon:14887;Parent=Msa0371510-mRNA-1
chr3_1 five_prime_UTR 69671913 69672219 69671913 ID=Msa0371510-mRNA-1:five_prime_utr;Parent=Msa0371510-mRNA-1
chr3_1 CDS 69672220 69672480 69672220 ID=Msa0371510-mRNA-1:cds;Parent=Msa0371510-mRNA-1
chr3_1 CDS 69672589 69672681 69672589 ID=Msa0371510-mRNA-1:cds;Parent=Msa0371510-mRNA-1
chr3_1 CDS 69672935 69673147 69672935 ID=Msa0371510-mRNA-1:cds;Parent=Msa0371510-mRNA-1
chr3_1 CDS 69675124 69675318 69675124 ID=Msa0371510-mRNA-1:cds;Parent=Msa0371510-mRNA-1
chr3_1 CDS 69677140 69677883 69677140 ID=Msa0371510-mRNA-1:cds;Parent=Msa0371510-mRNA-1
chr3_1 three_prime_UTR 69677884 69678423 69677884 ID=Msa0371510-mRNA-1:three_prime_utr;Parent=Msa0371510-mRNA-1
Gene Sequence

>Msa0371510

ATGAGTTTGCTGAAAGCAGTTTTTGTTTGGTGCATATGGTTAGGGTTATTTGAGTTATCATTAGCAAAAGTGAGACACTACAAGTTTGATGTTGAATACATATACAAAAAGCCAGATTGTGTGGAGCATGTTGTGATGGGAATCAATGGCCAGTTTCCAGGCCCAACTATTAAAGCTGAAGTTAATGACACCCTTGTCATTGACCTCACCAACAAGCTCCATACAGAAGGAACTGTTATTCACTGGCATGGAATCAGACAGTTTGGAACTCCTTGGGCTGATGGAACTGCTGCAATCTCTCAGTGTGCTATAAATCCAGGAGAAACTTTTCAATACAGATTCAAAGTTGACAGGCCTGGTACATATTTCTATCATGGACATTTTGGTATGCAAAGAGCAGCAGGGCTGTATGGTTCTCTAATAGTGGATTTACCAAAGGAACAAAGAGAGCCATTTCATTATGATGGTGAGTTTAATCTGCTCCTTAGTGATCTGTGGCACACAAGCTCACATGAACAAGAGGTTGGCCTCTCTTCAGCCCCAATGAGATGGATTGGTGAACCACAGAGCTTGCTCATCAATGGACGAGGACAGTTCAATTGTTCCCTAGCAGCTAAATATGGGAGCACCAACCTACAACAATGCAATTTGAAAGGTGGTGAAGAATGTGCACCCCAGATTCTTCATGTGGAGCCAAAAAAGACCTACAGAATAAGGATTGCTAGTACTACGTCCTTGGCTTCTCTCAACTTGGCCATTTCAAATCACAAACTTATTGTGGTGGAAGCAGATGGAAACTACGTGCACCCATTCGCAGTTGATGACATCGACATCTACTCAGGTGAAACCTACTCAGTACTCCTTACAACAGACCAAGACCCTAAAAAAAACTACTGGCTTTCAATTGGTGTTAGAGGCAGAAAACCAGGCACACCACAAGCCCTAACAATCCTTAACTACAAAACAATCTCTGCCTCAGTTTTTCCAACATTACCACCACCAGTCACACCCTTATGGAACGATACCGAACACAGCAAAGCATTCACAAAACAAATCATTTCCAAAATGGGAACTCCACAGCCACCGAAATCCTCACACCGCACGATTCTCCTCCTCAATACACAAAACAAAATCGGTAGTTTCACTAAATGGGCTATTAACAATGTTTCATTAACATTGCCAACCACACCTTACTTAGGATCAATCAAATTTAAGCTAAACAATACATTTGATAGAAATCCACCACCAGAGAGATTTCCAATGGATTATGACATATTTAAAAATCCAGTTAATCCAAATACAACTACCGGTAACGGTGTTTACACGTTTCAGTTGAATGAGGTTGTTGATGTGATACTACAAAATGCAAACCAGTTAAATGGGAATGGTAGTGAAATTCATCCATGGCATTTGCATGGACATGATTTTTGGGTTTTGGGATATGGTGAAGGGAGATTTAGACCAGGTGTTGATGAGAAAAGTTTCAATTTGAACGTGCACCTTTGA
Protein sequence

>Msa0371510

MSLLKAVFVWCIWLGLFELSLAKVRHYKFDVEYIYKKPDCVEHVVMGINGQFPGPTIKAEVNDTLVIDLTNKLHTEGTVIHWHGIRQFGTPWADGTAAISQCAINPGETFQYRFKVDRPGTYFYHGHFGMQRAAGLYGSLIVDLPKEQREPFHYDGEFNLLLSDLWHTSSHEQEVGLSSAPMRWIGEPQSLLINGRGQFNCSLAAKYGSTNLQQCNLKGGEECAPQILHVEPKKTYRIRIASTTSLASLNLAISNHKLIVVEADGNYVHPFAVDDIDIYSGETYSVLLTTDQDPKKNYWLSIGVRGRKPGTPQALTILNYKTISASVFPTLPPPVTPLWNDTEHSKAFTKQIISKMGTPQPPKSSHRTILLLNTQNKIGSFTKWAINNVSLTLPTTPYLGSIKFKLNNTFDRNPPPERFPMDYDIFKNPVNPNTTTGNGVYTFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVLGYGEGRFRPGVDEKSFNLNVHL*