Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342600 | XP_013447447.1 | 96.707 | 577 | 19 | 0 | 1 | 577 | 251 | 827 | 0.0 | 1169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342600 | sp|Q9AXT8|CMT1_MAIZE | 61.702 | 564 | 199 | 7 | 7 | 566 | 342 | 892 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342600 | G7ZY08 | 96.707 | 577 | 19 | 0 | 1 | 577 | 251 | 827 | 0.0 | 1169 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1342600 | Msa1447170 | 0.809772 | 1.604297e-50 | -8.615850e-47 |
| Msa0439080 | Msa1342600 | 0.930392 | 1.751746e-93 | -8.615850e-47 |
| Msa1008680 | Msa1342600 | 0.822009 | 2.978372e-53 | -8.615850e-47 |
| Msa1047380 | Msa1342600 | 0.921422 | 3.653803e-88 | -8.615850e-47 |
| Msa1082380 | Msa1342600 | 0.808457 | 3.068231e-50 | -8.615850e-47 |
| Msa1091410 | Msa1342600 | 0.922330 | 1.130812e-88 | -8.615850e-47 |
| Msa1127280 | Msa1342600 | 0.800461 | 1.425672e-48 | -8.615850e-47 |
| Msa1134790 | Msa1342600 | 0.931029 | 6.902831e-94 | -8.615850e-47 |
| Msa1139050 | Msa1342600 | 0.812246 | 4.669323e-51 | -8.615850e-47 |
| Msa1162880 | Msa1342600 | 0.821597 | 3.709682e-53 | -8.615850e-47 |
| Msa1165480 | Msa1342600 | 0.810363 | 1.196271e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342600 | MtrunA17_Chr7g0215341 | 96.707 | 577 | 19 | 0 | 1 | 577 | 251 | 827 | 0.0 | 1169 |
| Msa1342600 | MtrunA17_Chr5g0406641 | 93.391 | 575 | 38 | 0 | 2 | 576 | 261 | 835 | 0.0 | 1103 |
| Msa1342600 | MtrunA17_Chr6g0484831 | 92.535 | 576 | 43 | 0 | 2 | 577 | 260 | 835 | 0.0 | 1093 |
| Msa1342600 | MtrunA17_Chr4g0007641 | 87.260 | 573 | 73 | 0 | 5 | 577 | 271 | 843 | 0.0 | 1031 |
| Msa1342600 | MtrunA17_Chr6g0464681 | 76.949 | 590 | 95 | 3 | 2 | 577 | 264 | 826 | 0.0 | 928 |
| Msa1342600 | MtrunA17_Chr6g0486931 | 60.854 | 562 | 214 | 4 | 3 | 561 | 359 | 917 | 0.0 | 712 |
| Msa1342600 | MtrunA17_Chr8g0369361 | 56.786 | 560 | 239 | 3 | 2 | 560 | 217 | 774 | 0.0 | 664 |
| Msa1342600 | MtrunA17_Chr5g0427891 | 59.475 | 343 | 138 | 1 | 219 | 561 | 1 | 342 | 1.31e-142 | 417 |
| Msa1342600 | MtrunA17_Chr2g0302601 | 33.777 | 376 | 205 | 8 | 179 | 544 | 1215 | 1556 | 3.60e-56 | 205 |
| Msa1342600 | MtrunA17_Chr6g0477371 | 33.777 | 376 | 205 | 8 | 179 | 544 | 1206 | 1547 | 6.71e-55 | 201 |
| Msa1342600 | MtrunA17_Chr4g0017221 | 33.511 | 376 | 206 | 8 | 179 | 544 | 1190 | 1531 | 1.27e-54 | 200 |
| Msa1342600 | MtrunA17_Chr8g0364111 | 77.273 | 66 | 15 | 0 | 495 | 560 | 3 | 68 | 8.28e-29 | 109 |
| Msa1342600 | MtrunA17_Chr5g0427881 | 58.462 | 65 | 27 | 0 | 130 | 194 | 39 | 103 | 8.29e-22 | 90.5 |
| Msa1342600 | MtrunA17_Chr3g0087051 | 34.545 | 165 | 84 | 4 | 388 | 544 | 2 | 150 | 9.92e-21 | 89.4 |
| Msa1342600 | MtrunA17_Chr2g0306841 | 36.364 | 88 | 56 | 0 | 294 | 381 | 15 | 102 | 9.04e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1342600 | AT1G80740.1 | 59.298 | 570 | 220 | 5 | 2 | 564 | 221 | 785 | 0.0 | 692 |
| Msa1342600 | AT1G69770.1 | 59.425 | 557 | 218 | 5 | 7 | 557 | 270 | 824 | 0.0 | 669 |
| Msa1342600 | AT4G19020.1 | 56.655 | 556 | 241 | 0 | 5 | 560 | 726 | 1281 | 0.0 | 660 |
| Msa1342600 | AT4G19020.2 | 56.655 | 556 | 241 | 0 | 5 | 560 | 678 | 1233 | 0.0 | 660 |
| Msa1342600 | AT4G14140.3 | 34.933 | 375 | 202 | 8 | 179 | 544 | 1168 | 1509 | 1.28e-57 | 209 |
| Msa1342600 | AT4G14140.1 | 34.933 | 375 | 202 | 8 | 179 | 544 | 1168 | 1509 | 1.28e-57 | 209 |
| Msa1342600 | AT4G14140.2 | 34.933 | 375 | 202 | 8 | 179 | 544 | 1194 | 1535 | 1.36e-57 | 209 |
| Msa1342600 | AT4G08990.1 | 35.561 | 374 | 201 | 9 | 179 | 544 | 1161 | 1502 | 6.24e-56 | 204 |
| Msa1342600 | AT4G13610.1 | 34.409 | 372 | 196 | 8 | 179 | 544 | 1070 | 1399 | 1.46e-54 | 200 |
| Msa1342600 | AT5G49160.1 | 32.982 | 379 | 204 | 10 | 179 | 544 | 1183 | 1524 | 6.03e-51 | 189 |
| Msa1342600 | AT5G49160.2 | 32.891 | 377 | 207 | 9 | 179 | 544 | 1095 | 1436 | 7.00e-51 | 189 |
Find 156 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATTTGCTGGTGGGTTTC+TGG | 0.008640 | tig0005911:-39713 | Msa1342600:CDS |
| TGCTTTGGAGCATCTATTTC+TGG | 0.083264 | tig0005911:-40934 | Msa1342600:CDS |
| ACTTTACTGGATTTGTATTC+TGG | 0.102309 | tig0005911:-40982 | Msa1342600:CDS |
| CCAAAACGTACGTGAGTTTC+TGG | 0.160369 | tig0005911:+40724 | None:intergenic |
| TTCTAGGCCCTGAATATTAT+TGG | 0.195110 | tig0005911:+36979 | None:intergenic |
| ACATTCATTTATACAATTCT+AGG | 0.285423 | tig0005911:+36963 | None:intergenic |
| TAGACAACTTGGGTACTTAA+AGG | 0.288833 | tig0005911:+37105 | None:intergenic |
| TGTGAGAAGTTTGTACTAAA+TGG | 0.291004 | tig0005911:-40542 | Msa1342600:CDS |
| ACATTAGGTTTGGCAATTCT+AGG | 0.297456 | tig0005911:-37160 | Msa1342600:CDS |
| TAGGCCTGAGTGGACTTTAC+TGG | 0.302719 | tig0005911:-40995 | None:intergenic |
| CTGATGATTATGCAAGATTC+TGG | 0.311181 | tig0005911:-36932 | Msa1342600:three_prime_UTR |
| GATTCTGGAAACATAAAATA+TGG | 0.313320 | tig0005911:-36917 | Msa1342600:three_prime_UTR |
| CTTGCCCTTGGATACACATT+AGG | 0.317533 | tig0005911:-37175 | Msa1342600:CDS |
| AAATTTGCTGGTGGGTTTCT+GGG | 0.327523 | tig0005911:-39712 | Msa1342600:CDS |
| CCAGACTGCTATAAGCTTTG+TGG | 0.329709 | tig0005911:-37753 | Msa1342600:CDS |
| CATCCGAGCTTGATAATTCA+TGG | 0.344162 | tig0005911:+39663 | None:intergenic |
| CATATGGCCTTCCTCAATTT+CGG | 0.349601 | tig0005911:-39621 | Msa1342600:CDS |
| CCACCTTGTCAAGGTGTTAG+TGG | 0.350266 | tig0005911:-39865 | Msa1342600:CDS |
| ATGTCCACTGGTCTTTGCTT+TGG | 0.352341 | tig0005911:-40949 | Msa1342600:CDS |
| AGATATGGAACCTTCTCCTT+TGG | 0.356040 | tig0005911:+38570 | None:intergenic |
| CTTTACTGGATTTGTATTCT+GGG | 0.362248 | tig0005911:-40981 | Msa1342600:CDS |
| TTAGTGGTTTCAATCGCTTC+AGG | 0.364770 | tig0005911:-39849 | Msa1342600:CDS |
| GGGCTCCCATGTATCATAAC+TGG | 0.370498 | tig0005911:+40236 | None:intergenic |
| TATCCAAGGGCAAGGGCAAC+AGG | 0.371847 | tig0005911:+37184 | None:intergenic |
| GAAACATAAAATATGGCAAA+TGG | 0.375563 | tig0005911:-36910 | Msa1342600:three_prime_UTR |
| GTTCCTGTTGCCCTTGCCCT+TGG | 0.380094 | tig0005911:-37187 | Msa1342600:CDS |
| ACCTGACTCTGAGGTATTTG+AGG | 0.384130 | tig0005911:-40441 | Msa1342600:CDS |
| AACACATACCTCTGTTTGAC+AGG | 0.386966 | tig0005911:+37729 | None:intergenic |
| AAAAGAGTGTATCTAAAATC+TGG | 0.397497 | tig0005911:-38403 | Msa1342600:CDS |
| ACAAATGTCATAGCATAATC+TGG | 0.400607 | tig0005911:+38286 | None:intergenic |
| TCCAGAGATGGTGAATTATT+CGG | 0.404648 | tig0005911:-38682 | Msa1342600:intron |
| AGACAACTTGGGTACTTAAA+GGG | 0.412259 | tig0005911:+37106 | None:intergenic |
| CCTTGGATACACATTAGGTT+TGG | 0.421810 | tig0005911:-37170 | Msa1342600:CDS |
| TGGCCAAGGCATTATACCTT+GGG | 0.423475 | tig0005911:-39239 | Msa1342600:CDS |
| GCTGAATACAACAGGCCATT+TGG | 0.427862 | tig0005911:-38168 | Msa1342600:intron |
| ATGATGGCTGCAGGGTCATA+TGG | 0.428980 | tig0005911:-39637 | Msa1342600:CDS |
| ATGAGTTGGTAACGGATATG+AGG | 0.447163 | tig0005911:+39449 | None:intergenic |
| TAAAGAAAACAAGGTGGAAT+GGG | 0.451055 | tig0005911:-38437 | Msa1342600:CDS |
| CTAAGAACTCTGTCTTGGTC+TGG | 0.452322 | tig0005911:+37807 | None:intergenic |
| CTGGATTTGTATTCTGGGTG+TGG | 0.458568 | tig0005911:-40976 | Msa1342600:CDS |
| CTTGCATAATCATCAGTTGT+AGG | 0.460358 | tig0005911:+36939 | None:intergenic |
| TTTCTTACTTCAAACTCAGT+AGG | 0.462655 | tig0005911:+39402 | None:intergenic |
| CTCAGTAGGGATGACTGATC+TGG | 0.468959 | tig0005911:+39416 | None:intergenic |
| CGAATAACAACCTGGTTATG+AGG | 0.471305 | tig0005911:+38096 | None:intergenic |
| ATGCTATGACATTTGTTCAC+GGG | 0.472626 | tig0005911:-38279 | Msa1342600:CDS |
| TTTCTGGGGCGTTATGCTGT+AGG | 0.473896 | tig0005911:-39697 | Msa1342600:CDS |
| CGGATGGGAATGATGGCTGC+AGG | 0.474115 | tig0005911:-39646 | Msa1342600:CDS |
| AAAGGACGGGCTAGACAACT+TGG | 0.474566 | tig0005911:+37094 | None:intergenic |
| ACAGGCCATTTGGTCGACTT+TGG | 0.475021 | tig0005911:-38158 | Msa1342600:intron |
| AATATACCTCAAGCCCTCAA+TGG | 0.475252 | tig0005911:+40215 | None:intergenic |
| ACCTCAAATACCTCAGAGTC+AGG | 0.475532 | tig0005911:+40440 | None:intergenic |
| CCACAAAGCTTATAGCAGTC+TGG | 0.481850 | tig0005911:+37753 | None:intergenic |
| ACGATTCCAGTTATGATACA+TGG | 0.482110 | tig0005911:-40242 | Msa1342600:CDS |
| AAACATAAAATATGGCAAAT+GGG | 0.485354 | tig0005911:-36909 | Msa1342600:three_prime_UTR |
| GCCATTTGGTCGACTTTGGT+GGG | 0.487889 | tig0005911:-38154 | Msa1342600:CDS |
| CGAGAGAATGCAAGGCTACA+AGG | 0.488910 | tig0005911:-37780 | Msa1342600:CDS |
| TTCTTACTTCAAACTCAGTA+GGG | 0.495616 | tig0005911:+39403 | None:intergenic |
| ATATACCTCAAGCCCTCAAT+GGG | 0.497888 | tig0005911:+40216 | None:intergenic |
| TCATCATCAACTACATCTAA+AGG | 0.502737 | tig0005911:+37076 | None:intergenic |
| GGCCATTTGGTCGACTTTGG+TGG | 0.503320 | tig0005911:-38155 | Msa1342600:CDS |
| GATACATGGGAGCCCATTGA+GGG | 0.504051 | tig0005911:-40228 | Msa1342600:CDS |
| TGCATATTCATTTATATCCA+CGG | 0.506267 | tig0005911:+40771 | None:intergenic |
| GAACTCTGTCTTGGTCTGGA+TGG | 0.507573 | tig0005911:+37811 | None:intergenic |
| GGGTGTGGAGCTATGTCCAC+TGG | 0.509075 | tig0005911:-40961 | Msa1342600:CDS |
| TCATCGGTGTTTAATTTCAA+AGG | 0.509674 | tig0005911:+38615 | None:intergenic |
| TCAGCAACTAATTGTTTACA+TGG | 0.512928 | tig0005911:-39794 | Msa1342600:CDS |
| CACCACAAATAAAATCAGCT+TGG | 0.514779 | tig0005911:+39890 | None:intergenic |
| TTAAAGAAAACAAGGTGGAA+TGG | 0.515036 | tig0005911:-38438 | Msa1342600:CDS |
| TTAGATGTAGTTGATGATGA+TGG | 0.517459 | tig0005911:-37073 | Msa1342600:CDS |
| GTCCCCAAGGTATAATGCCT+TGG | 0.517822 | tig0005911:+39236 | None:intergenic |
| ATCTTTCAGGTGCAATGGAA+GGG | 0.518544 | tig0005911:-40267 | Msa1342600:intron |
| TCAAGCTCGGATGGGAATGA+TGG | 0.519547 | tig0005911:-39653 | Msa1342600:CDS |
| CTGGCCAAGGCATTATACCT+TGG | 0.521309 | tig0005911:-39240 | Msa1342600:CDS |
| CACTAATGAAAAGTGTCAGC+TGG | 0.523124 | tig0005911:-39259 | Msa1342600:CDS |
| AAAACACGCATCCGAAATTG+AGG | 0.524141 | tig0005911:+39610 | None:intergenic |
| CAAAACGTACGTGAGTTTCT+GGG | 0.525514 | tig0005911:+40725 | None:intergenic |
| TTATAATCTTTCAGGTGCAA+TGG | 0.528275 | tig0005911:-40272 | Msa1342600:intron |
| GAAGCCTAAGTATGTTCTCA+TGG | 0.528299 | tig0005911:-39755 | Msa1342600:CDS |
| AACAACCTGGTTATGAGGCT+CGG | 0.528328 | tig0005911:+38101 | None:intergenic |
| AATCTTTCAGGTGCAATGGA+AGG | 0.528541 | tig0005911:-40268 | Msa1342600:intron |
| TCCCACCAAAGTCGACCAAA+TGG | 0.528934 | tig0005911:+38153 | None:intergenic |
| CATGAATTATCAAGCTCGGA+TGG | 0.529786 | tig0005911:-39662 | Msa1342600:CDS |
| ACAGATTCTGATTTGAATGC+TGG | 0.534166 | tig0005911:-40509 | Msa1342600:CDS |
| ATCAACTACATCTAAAGGAC+GGG | 0.535962 | tig0005911:+37081 | None:intergenic |
| CCAAACCTAATGTGTATCCA+AGG | 0.536081 | tig0005911:+37170 | None:intergenic |
| TTCTGGCATTAAGCTTGTCA+CGG | 0.537807 | tig0005911:-40917 | Msa1342600:CDS |
| TTGCCACATTCCAAAGGAGA+AGG | 0.538842 | tig0005911:-38580 | Msa1342600:intron |
| TATATCAGATTAAAGAGAAG+TGG | 0.544554 | tig0005911:-39026 | Msa1342600:intron |
| GAATGCTAAGAACTCTGTCT+TGG | 0.555016 | tig0005911:+37802 | None:intergenic |
| CTGGATTCAACCTCATGAGT+TGG | 0.555366 | tig0005911:+39435 | None:intergenic |
| GAACCTTCTCCTTTGGAATG+TGG | 0.555858 | tig0005911:+38577 | None:intergenic |
| GTGGTGAGACTTACAGGAAG+AGG | 0.556985 | tig0005911:+40017 | None:intergenic |
| ATGTGCAGGTACATGCAAGT+TGG | 0.560046 | tig0005911:-37223 | Msa1342600:intron |
| AGACTACTCTCTATTTGCTA+TGG | 0.562696 | tig0005911:-40413 | Msa1342600:CDS |
| TCTAAAATCTGGAAAGCCGT+TGG | 0.563755 | tig0005911:-38392 | Msa1342600:intron |
| AGCGATGATGAAAAGAGCTA+CGG | 0.565697 | tig0005911:-39077 | Msa1342600:CDS |
| AAGGGCCGAGCCTCATAACC+AGG | 0.568054 | tig0005911:-38106 | Msa1342600:intron |
| AGTTGTCAAAGGACCGTCAT+CGG | 0.570986 | tig0005911:+37132 | None:intergenic |
| ATGAATTATCAAGCTCGGAT+GGG | 0.571223 | tig0005911:-39661 | Msa1342600:CDS |
| TGTGGTGGGCCACCTTGTCA+AGG | 0.574035 | tig0005911:-39874 | Msa1342600:CDS |
| TTGTGTCCACTGTTGTAACA+AGG | 0.575348 | tig0005911:-38125 | Msa1342600:CDS |
| TGAAAAGTGTCAGCTGGCCA+AGG | 0.575456 | tig0005911:-39253 | Msa1342600:CDS |
| AATTTGCTGGTGGGTTTCTG+GGG | 0.576721 | tig0005911:-39711 | Msa1342600:CDS |
| TTGAATGCTGGTGAAGAAGC+TGG | 0.577481 | tig0005911:-40497 | Msa1342600:CDS |
| TTCTCCATGAGAACATACTT+AGG | 0.578027 | tig0005911:+39751 | None:intergenic |
| CGCAATTGATGATCTCCCAC+CGG | 0.580227 | tig0005911:-39214 | Msa1342600:intron |
| GAAGAAGCTGGTGAAGAAGC+TGG | 0.580453 | tig0005911:-40485 | Msa1342600:CDS |
| CCTACTCTGAAATATAGTCC+TGG | 0.581965 | tig0005911:+40368 | None:intergenic |
| CTAATGTGTATCCAAGGGCA+AGG | 0.584216 | tig0005911:+37176 | None:intergenic |
| TGATACATGGGAGCCCATTG+AGG | 0.584875 | tig0005911:-40229 | Msa1342600:CDS |
| TGAAAAGACATGGATTAATG+AGG | 0.588868 | tig0005911:+37034 | None:intergenic |
| GACAACTTGGGTACTTAAAG+GGG | 0.589664 | tig0005911:+37107 | None:intergenic |
| TTAGCATTCGAGAGAATGCA+AGG | 0.591436 | tig0005911:-37788 | Msa1342600:CDS |
| GCGATGATGAAAAGAGCTAC+GGG | 0.591951 | tig0005911:-39076 | Msa1342600:CDS |
| GCAAACTCTCTCATAGTCAT+CGG | 0.593163 | tig0005911:+38599 | None:intergenic |
| TTTAAGTCTACTGAAAGAGT+GGG | 0.594108 | tig0005911:-40573 | Msa1342600:CDS |
| TGACTTGAAGAGATGGGCCG+TGG | 0.594840 | tig0005911:-40788 | Msa1342600:intron |
| TGGCCATGAATTATCAAGCT+CGG | 0.597417 | tig0005911:-39666 | Msa1342600:CDS |
| CGATTCCAGTTATGATACAT+GGG | 0.597731 | tig0005911:-40241 | Msa1342600:CDS |
| GGGAGCCCATTGAGGGCTTG+AGG | 0.601086 | tig0005911:-40221 | Msa1342600:intron |
| GATAATTCATGGCCACTAGA+CGG | 0.606811 | tig0005911:+39674 | None:intergenic |
| ATTCTAGGACTCTCCGATGA+CGG | 0.608856 | tig0005911:-37145 | Msa1342600:CDS |
| TGAGTTGGTAACGGATATGA+GGG | 0.612406 | tig0005911:+39450 | None:intergenic |
| TATGCTATGACATTTGTTCA+CGG | 0.613180 | tig0005911:-38280 | Msa1342600:CDS |
| GGCAAACTTCAGGGACCTCG+AGG | 0.614201 | tig0005911:-38470 | Msa1342600:CDS |
| GATCATCAATTGCGTCCCCA+AGG | 0.614386 | tig0005911:+39223 | None:intergenic |
| GAGAGTTTGCCACATTCCAA+AGG | 0.615917 | tig0005911:-38586 | Msa1342600:CDS |
| AGATAACAGTTGAAAAGACA+TGG | 0.616171 | tig0005911:+37024 | None:intergenic |
| CATCAACTACATCTAAAGGA+CGG | 0.616327 | tig0005911:+37080 | None:intergenic |
| AATTCAGGTGAGGAATGAGC+CGG | 0.616828 | tig0005911:-40606 | Msa1342600:intron |
| TCAACCTCATGAGTTGGTAA+CGG | 0.622459 | tig0005911:+39441 | None:intergenic |
| TTATGCTGTAGGCCGTCTAG+TGG | 0.625272 | tig0005911:-39686 | Msa1342600:CDS |
| TGATCATACAGCATACCACT+TGG | 0.627170 | tig0005911:+38642 | None:intergenic |
| CACGCATCCGAAATTGAGGA+AGG | 0.629581 | tig0005911:+39614 | None:intergenic |
| GCAAACTTCAGGGACCTCGA+GGG | 0.637506 | tig0005911:-38469 | Msa1342600:CDS |
| CAAACCTAATGTGTATCCAA+GGG | 0.638670 | tig0005911:+37171 | None:intergenic |
| GGATGGGAATGATGGCTGCA+GGG | 0.639348 | tig0005911:-39645 | Msa1342600:CDS |
| TAATGTGTATCCAAGGGCAA+GGG | 0.640727 | tig0005911:+37177 | None:intergenic |
| TGCTCCAAAGCAAAGACCAG+TGG | 0.647355 | tig0005911:+40926 | None:intergenic |
| AAATCCAGTAAAGTCCACTC+AGG | 0.651482 | tig0005911:+40972 | None:intergenic |
| AGATGATTCACCTGACTCTG+AGG | 0.655360 | tig0005911:-40450 | Msa1342600:CDS |
| TGTGTCCACTGTTGTAACAA+GGG | 0.656136 | tig0005911:-38124 | Msa1342600:CDS |
| ACACATACCTCTGTTTGACA+GGG | 0.662004 | tig0005911:+37730 | None:intergenic |
| AAGGACGGGCTAGACAACTT+GGG | 0.665885 | tig0005911:+37095 | None:intergenic |
| ATATCCGTTACCAACTCATG+AGG | 0.669953 | tig0005911:-39445 | Msa1342600:CDS |
| CTCGGCCCTTGTTACAACAG+TGG | 0.671085 | tig0005911:+38119 | None:intergenic |
| GGCCAAGGCATTATACCTTG+GGG | 0.678055 | tig0005911:-39238 | Msa1342600:CDS |
| CATATATACATACTTAGAGG+AGG | 0.681619 | tig0005911:+38255 | None:intergenic |
| CCACTAACACCTTGACAAGG+TGG | 0.683957 | tig0005911:+39865 | None:intergenic |
| GACTCTCAAAGTGCACCAAG+TGG | 0.685496 | tig0005911:-38657 | Msa1342600:CDS |
| TTTGTGGCCCTGTCAAACAG+AGG | 0.688111 | tig0005911:-37737 | Msa1342600:intron |
| TTAAAGGGGAGAGTTGTCAA+AGG | 0.689309 | tig0005911:+37121 | None:intergenic |
| TGTGCTAGTTAAAGAAAACA+AGG | 0.696627 | tig0005911:-38446 | Msa1342600:CDS |
| CTTTAACTAGCACACCCTCG+AGG | 0.704914 | tig0005911:+38455 | None:intergenic |
| GCTAGTTAAAGAAAACAAGG+TGG | 0.715923 | tig0005911:-38443 | Msa1342600:CDS |
| AAACCACTAACACCTTGACA+AGG | 0.729461 | tig0005911:+39862 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATAAATTTATAATCTTTC+AGG | - | tig0005911:37557-37576 | Msa1342600:intron | 15.0% |
| !!! | ATGAAAGATTTTGTTATAAA+TGG | - | tig0005911:37778-37797 | Msa1342600:CDS | 15.0% |
| !!! | TTTTGTTATAAATGGATATA+AGG | - | tig0005911:37786-37805 | Msa1342600:CDS | 15.0% |
| !!! | TTACTCTAAATGTTTTAAAA+TGG | - | tig0005911:38324-38343 | Msa1342600:intron | 15.0% |
| !! | CATATATTTCAATTTCAAAA+TGG | + | tig0005911:40311-40330 | None:intergenic | 15.0% |
| !! | ATATAGAAGTTAGTTATAAT+AGG | + | tig0005911:40367-40386 | None:intergenic | 15.0% |
| !!! | TAATTTGCATAATGTTTCTT+TGG | - | tig0005911:36971-36990 | Msa1342600:three_prime_UTR | 20.0% |
| !! | TTGCATAAGATAAAGTTATA+AGG | + | tig0005911:37503-37522 | None:intergenic | 20.0% |
| !!! | ATAATCAATATCTTGATGAT+TGG | + | tig0005911:37648-37667 | None:intergenic | 20.0% |
| !!! | TTAAGATTTGCTGTTAATTA+AGG | - | tig0005911:37690-37709 | Msa1342600:intron | 20.0% |
| !!! | TCTAAATGTTTTAAAATGGA+AGG | - | tig0005911:38328-38347 | Msa1342600:intron | 20.0% |
| !!! | TTTGAGTTTTGAATTATTCT+TGG | - | tig0005911:38849-38868 | Msa1342600:intron | 20.0% |
| !! | TATAATTAGAATTGTGTATG+TGG | - | tig0005911:39040-39059 | Msa1342600:CDS | 20.0% |
| !! | CATAATATCAATTCAAGATA+TGG | + | tig0005911:39285-39304 | None:intergenic | 20.0% |
| !!! | TTTTAAAGAGGTTTTACAAT+GGG | + | tig0005911:39816-39835 | None:intergenic | 20.0% |
| !!! | AATACAACATTGTTTTAAAG+AGG | + | tig0005911:39828-39847 | None:intergenic | 20.0% |
| !! | ATTTCAATTTCAAAATGGAA+GGG | + | tig0005911:40306-40325 | None:intergenic | 20.0% |
| !! | TATTTCAATTTCAAAATGGA+AGG | + | tig0005911:40307-40326 | None:intergenic | 20.0% |
| !!! | ATAATAGGTTTATCAGTTTT+TGG | + | tig0005911:40352-40371 | None:intergenic | 20.0% |
| !! | AATATTACACCTAAAAATTC+TGG | + | tig0005911:40441-40460 | None:intergenic | 20.0% |
| !! | TTAGGTGTAATATTTCTTAT+TGG | - | tig0005911:40447-40466 | Msa1342600:CDS | 20.0% |
| !! | TTCCATTATTATGTATATCA+TGG | - | tig0005911:40570-40589 | Msa1342600:CDS | 20.0% |
| !!! | TTTTTAAGCCAATAATATTC+AGG | - | tig0005911:40850-40869 | Msa1342600:intron | 20.0% |
| !!! | TTTTAAGCCAATAATATTCA+GGG | - | tig0005911:40851-40870 | Msa1342600:intron | 20.0% |
| !! | ACATTCATTTATACAATTCT+AGG | + | tig0005911:40877-40896 | None:intergenic | 20.0% |
| !! | AAACATAAAATATGGCAAAT+GGG | - | tig0005911:40928-40947 | Msa1342600:CDS | 20.0% |
| ! | TGCATATTCATTTATATCCA+CGG | + | tig0005911:37069-37088 | None:intergenic | 25.0% |
| ! | AAAAATCTAGTACTAAGCAA+CGG | + | tig0005911:38284-38303 | None:intergenic | 25.0% |
| ! | GAAATTTACAATCACAACAT+GGG | + | tig0005911:38504-38523 | None:intergenic | 25.0% |
| ! | AGAAATTTACAATCACAACA+TGG | + | tig0005911:38505-38524 | None:intergenic | 25.0% |
| !!! | TTTGATTCCATTTTTTTCCT+TGG | - | tig0005911:38704-38723 | Msa1342600:intron | 25.0% |
| ! | AAGAAAACCAAGGAAAAAAA+TGG | + | tig0005911:38714-38733 | None:intergenic | 25.0% |
| ! | TGTTTGATAAAAGAAAACCA+AGG | + | tig0005911:38724-38743 | None:intergenic | 25.0% |
| !!! | TTGGTTTTCTTTTATCAAAC+AGG | - | tig0005911:38723-38742 | Msa1342600:intron | 25.0% |
| !!! | TATTTTTGAAAATCAGTACG+AGG | + | tig0005911:38793-38812 | None:intergenic | 25.0% |
| ! | TATATCAGATTAAAGAGAAG+TGG | - | tig0005911:38811-38830 | Msa1342600:intron | 25.0% |
| !!! | TTCTTGGTTGTTTTCTTTTT+TGG | - | tig0005911:38865-38884 | Msa1342600:intron | 25.0% |
| ! | ATTTATCAGCTAAAATGTAC+CGG | - | tig0005911:38976-38995 | Msa1342600:intron | 25.0% |
| !! | AAAAGAGTGTATCTAAAATC+TGG | - | tig0005911:39434-39453 | Msa1342600:CDS | 25.0% |
| ! | TATATGGAAAAAAAAGGTTG+TGG | + | tig0005911:39527-39546 | None:intergenic | 25.0% |
| !!! | ACAACCTTTTTTTTCCATAT+AGG | - | tig0005911:39526-39545 | Msa1342600:intron | 25.0% |
| !!! | GTTTTAAAGAGGTTTTACAA+TGG | + | tig0005911:39817-39836 | None:intergenic | 25.0% |
| ! | TTCTTATTGGACTAACAATA+TGG | - | tig0005911:40460-40479 | Msa1342600:CDS | 25.0% |
| ! | TGCCATGATATACATAATAA+TGG | + | tig0005911:40575-40594 | None:intergenic | 25.0% |
| !! | GATTCTGGAAACATAAAATA+TGG | - | tig0005911:40920-40939 | Msa1342600:CDS | 25.0% |
| ! | GAAACATAAAATATGGCAAA+TGG | - | tig0005911:40927-40946 | Msa1342600:CDS | 25.0% |
| ACTTTACTGGATTTGTATTC+TGG | - | tig0005911:36874-36893 | Msa1342600:three_prime_UTR | 30.0% | |
| CTTTACTGGATTTGTATTCT+GGG | - | tig0005911:36875-36894 | Msa1342600:three_prime_UTR | 30.0% | |
| !!! | TTGTTTTTGACTTGAAGAGA+TGG | - | tig0005911:37042-37061 | Msa1342600:three_prime_UTR | 30.0% |
| !!! | TGTTTTTGACTTGAAGAGAT+GGG | - | tig0005911:37043-37062 | Msa1342600:three_prime_UTR | 30.0% |
| CTTTCCAAAATGTCAAATTC+AGG | - | tig0005911:37216-37235 | Msa1342600:CDS | 30.0% | |
| !! | TTTTAAGTCTACTGAAAGAG+TGG | - | tig0005911:37263-37282 | Msa1342600:intron | 30.0% |
| TTTAAGTCTACTGAAAGAGT+GGG | - | tig0005911:37264-37283 | Msa1342600:intron | 30.0% | |
| TGTGAGAAGTTTGTACTAAA+TGG | - | tig0005911:37295-37314 | Msa1342600:intron | 30.0% | |
| ! | TTATAATCTTTCAGGTGCAA+TGG | - | tig0005911:37565-37584 | Msa1342600:intron | 30.0% |
| TTGAGTACAAGTCAATAATG+AGG | + | tig0005911:37847-37866 | None:intergenic | 30.0% | |
| !! | AAGCTGATTTTATTTGTGGT+GGG | - | tig0005911:37949-37968 | Msa1342600:intron | 30.0% |
| !!! | TGATTTTTTTCATCCTCCAA+TGG | + | tig0005911:38026-38045 | None:intergenic | 30.0% |
| TCAGCAACTAATTGTTTACA+TGG | - | tig0005911:38043-38062 | Msa1342600:intron | 30.0% | |
| !!! | GTTGACATTTTGAAATTTGC+TGG | - | tig0005911:38113-38132 | Msa1342600:CDS | 30.0% |
| !!! | ACATTTTGAAATTTGCTGGT+GGG | - | tig0005911:38117-38136 | Msa1342600:CDS | 30.0% |
| TTCTTACTTCAAACTCAGTA+GGG | + | tig0005911:38437-38456 | None:intergenic | 30.0% | |
| TTTCTTACTTCAAACTCAGT+AGG | + | tig0005911:38438-38457 | None:intergenic | 30.0% | |
| TCTTTGTACTTTCATAATGC+AGG | - | tig0005911:38536-38555 | Msa1342600:intron | 30.0% | |
| CAAAATGCAGTTCATATATG+CGG | + | tig0005911:39002-39021 | None:intergenic | 30.0% | |
| ! | TCATCGGTGTTTAATTTCAA+AGG | + | tig0005911:39225-39244 | None:intergenic | 30.0% |
| TGTGCTAGTTAAAGAAAACA+AGG | - | tig0005911:39391-39410 | Msa1342600:intron | 30.0% | |
| TTAAAGAAAACAAGGTGGAA+TGG | - | tig0005911:39399-39418 | Msa1342600:intron | 30.0% | |
| TAAAGAAAACAAGGTGGAAT+GGG | - | tig0005911:39400-39419 | Msa1342600:intron | 30.0% | |
| ! | AGATACACTCTTTTAACAGA+CGG | + | tig0005911:39428-39447 | None:intergenic | 30.0% |
| TACTAATTCTGTCTTGTCTT+AGG | - | tig0005911:39468-39487 | Msa1342600:intron | 30.0% | |
| ACTAATTCTGTCTTGTCTTA+GGG | - | tig0005911:39469-39488 | Msa1342600:intron | 30.0% | |
| GGAACCTATATGGAAAAAAA+AGG | + | tig0005911:39533-39552 | None:intergenic | 30.0% | |
| ACAAATGTCATAGCATAATC+TGG | + | tig0005911:39554-39573 | None:intergenic | 30.0% | |
| TATGCTATGACATTTGTTCA+CGG | - | tig0005911:39557-39576 | Msa1342600:intron | 30.0% | |
| CATATATACATACTTAGAGG+AGG | + | tig0005911:39585-39604 | None:intergenic | 30.0% | |
| GCACATATATACATACTTAG+AGG | + | tig0005911:39588-39607 | None:intergenic | 30.0% | |
| !!! | ATCTGACCATGTTTTTTGTT+TGG | - | tig0005911:39903-39922 | Msa1342600:intron | 30.0% |
| TCCAAAGTTATTCCATTTCA+AGG | - | tig0005911:39996-40015 | Msa1342600:intron | 30.0% | |
| TATGAAAATTTGTGTATGCG+AGG | + | tig0005911:40207-40226 | None:intergenic | 30.0% | |
| TCATATGAAGTTTACAGACA+AGG | - | tig0005911:40260-40279 | Msa1342600:CDS | 30.0% | |
| !!! | TTTTTGGTTAAGGAATTGGA+AGG | + | tig0005911:40336-40355 | None:intergenic | 30.0% |
| !!! | TCAGTTTTTGGTTAAGGAAT+TGG | + | tig0005911:40340-40359 | None:intergenic | 30.0% |
| !!! | GGTTTATCAGTTTTTGGTTA+AGG | + | tig0005911:40346-40365 | None:intergenic | 30.0% |
| TATTTCCATCTTTAATGTGC+AGG | - | tig0005911:40600-40619 | Msa1342600:CDS | 30.0% | |
| TCATCATCAACTACATCTAA+AGG | + | tig0005911:40764-40783 | None:intergenic | 30.0% | |
| !! | TTAGATGTAGTTGATGATGA+TGG | - | tig0005911:40764-40783 | Msa1342600:CDS | 30.0% |
| ! | TGAAAAGACATGGATTAATG+AGG | + | tig0005911:40806-40825 | None:intergenic | 30.0% |
| AGATAACAGTTGAAAAGACA+TGG | + | tig0005911:40816-40835 | None:intergenic | 30.0% | |
| ! | CTCACCTGAATTTGACATTT+TGG | + | tig0005911:37223-37242 | None:intergenic | 35.0% |
| CAAAATGTCAAATTCAGGTG+AGG | - | tig0005911:37221-37240 | Msa1342600:intron | 35.0% | |
| AGACTTAAAAAGTCTTCTGC+CGG | + | tig0005911:37253-37272 | None:intergenic | 35.0% | |
| ! | ACAGATTCTGATTTGAATGC+TGG | - | tig0005911:37328-37347 | Msa1342600:intron | 35.0% |
| ! | AGACTACTCTCTATTTGCTA+TGG | - | tig0005911:37424-37443 | Msa1342600:intron | 35.0% |
| ACGATTCCAGTTATGATACA+TGG | - | tig0005911:37595-37614 | Msa1342600:intron | 35.0% | |
| CGATTCCAGTTATGATACAT+GGG | - | tig0005911:37596-37615 | Msa1342600:intron | 35.0% | |
| TACAAGTCAATAATGAGGAG+TGG | + | tig0005911:37842-37861 | None:intergenic | 35.0% | |
| AACCATTAGAGGTGAAAGAA+GGG | + | tig0005911:37871-37890 | None:intergenic | 35.0% | |
| AAACCATTAGAGGTGAAAGA+AGG | + | tig0005911:37872-37891 | None:intergenic | 35.0% | |
| !! | GACAGTTGATAAACCATTAG+AGG | + | tig0005911:37882-37901 | None:intergenic | 35.0% |
| TACTACTTCATGCTTGTCTA+GGG | - | tig0005911:37924-37943 | Msa1342600:intron | 35.0% | |
| CACCACAAATAAAATCAGCT+TGG | + | tig0005911:37950-37969 | None:intergenic | 35.0% | |
| !! | CAAGCTGATTTTATTTGTGG+TGG | - | tig0005911:37948-37967 | Msa1342600:intron | 35.0% |
| TTCTCCATGAGAACATACTT+AGG | + | tig0005911:38089-38108 | None:intergenic | 35.0% | |
| !!! | GACATTTTGAAATTTGCTGG+TGG | - | tig0005911:38116-38135 | Msa1342600:CDS | 35.0% |
| ATGAATTATCAAGCTCGGAT+GGG | - | tig0005911:38176-38195 | Msa1342600:intron | 35.0% | |
| ! | TTGTGCCCTTTTCTTAGATA+AGG | - | tig0005911:38476-38495 | Msa1342600:intron | 35.0% |
| GGGTTCCTTATCTAAGAAAA+GGG | + | tig0005911:38484-38503 | None:intergenic | 35.0% | |
| TGGGTTCCTTATCTAAGAAA+AGG | + | tig0005911:38485-38504 | None:intergenic | 35.0% | |
| TGTGAGCAAAAACAACATAC+CGG | + | tig0005911:38645-38664 | None:intergenic | 35.0% | |
| ATTGCAATGAAAGATGTCAG+TGG | - | tig0005911:38897-38916 | Msa1342600:intron | 35.0% | |
| ! | AACTGCATTTTGTCTTACTC+TGG | - | tig0005911:39010-39029 | Msa1342600:intron | 35.0% |
| GCATATAGTTACATGTCACA+TGG | - | tig0005911:39068-39087 | Msa1342600:CDS | 35.0% | |
| ! | CCAATTCAAGTTAGTGATGA+AGG | + | tig0005911:39114-39133 | None:intergenic | 35.0% |
| CCTTCATCACTAACTTGAAT+TGG | - | tig0005911:39111-39130 | Msa1342600:intron | 35.0% | |
| ! | ATATGTTTCTACTCCAGAGA+TGG | - | tig0005911:39143-39162 | Msa1342600:intron | 35.0% |
| TCCAGAGATGGTGAATTATT+CGG | - | tig0005911:39155-39174 | Msa1342600:intron | 35.0% | |
| GCTAGTTAAAGAAAACAAGG+TGG | - | tig0005911:39394-39413 | Msa1342600:intron | 35.0% | |
| ! | GATACACTCTTTTAACAGAC+GGG | + | tig0005911:39427-39446 | None:intergenic | 35.0% |
| CAAGACAGAATTAGTACCAA+CGG | + | tig0005911:39464-39483 | None:intergenic | 35.0% | |
| ! | AGCATAATCTGGAACCTATA+TGG | + | tig0005911:39543-39562 | None:intergenic | 35.0% |
| ATGCTATGACATTTGTTCAC+GGG | - | tig0005911:39558-39577 | Msa1342600:intron | 35.0% | |
| ATGTATCTGCTGAATACAAC+AGG | - | tig0005911:39661-39680 | Msa1342600:CDS | 35.0% | |
| ! | AAAGAGGTTTTACAATGGGA+GGG | + | tig0005911:39812-39831 | None:intergenic | 35.0% |
| ! | TAAAGAGGTTTTACAATGGG+AGG | + | tig0005911:39813-39832 | None:intergenic | 35.0% |
| TGAGAAATGTTATCGACCTT+AGG | - | tig0005911:39848-39867 | Msa1342600:CDS | 35.0% | |
| ATGCTAACATGATCATCCTA+AGG | + | tig0005911:39867-39886 | None:intergenic | 35.0% | |
| ACAGGTCCAAACAAAAAACA+TGG | + | tig0005911:39912-39931 | None:intergenic | 35.0% | |
| GCCTTGAAATGGAATAACTT+TGG | + | tig0005911:40000-40019 | None:intergenic | 35.0% | |
| GTTCAAACTGGTATCTTATC+TGG | - | tig0005911:40128-40147 | Msa1342600:intron | 35.0% | |
| ATGAAGTTTACAGACAAGGA+TGG | - | tig0005911:40264-40283 | Msa1342600:intron | 35.0% | |
| ATGTACCTGCACATTAAAGA+TGG | + | tig0005911:40608-40627 | None:intergenic | 35.0% | |
| CAAACCTAATGTGTATCCAA+GGG | + | tig0005911:40669-40688 | None:intergenic | 35.0% | |
| ACATTAGGTTTGGCAATTCT+AGG | - | tig0005911:40677-40696 | Msa1342600:intron | 35.0% | |
| AGACAACTTGGGTACTTAAA+GGG | + | tig0005911:40734-40753 | None:intergenic | 35.0% | |
| TAGACAACTTGGGTACTTAA+AGG | + | tig0005911:40735-40754 | None:intergenic | 35.0% | |
| ATCAACTACATCTAAAGGAC+GGG | + | tig0005911:40759-40778 | None:intergenic | 35.0% | |
| CATCAACTACATCTAAAGGA+CGG | + | tig0005911:40760-40779 | None:intergenic | 35.0% | |
| TTCTAGGCCCTGAATATTAT+TGG | + | tig0005911:40861-40880 | None:intergenic | 35.0% | |
| CTTGCATAATCATCAGTTGT+AGG | + | tig0005911:40901-40920 | None:intergenic | 35.0% | |
| CTGATGATTATGCAAGATTC+TGG | - | tig0005911:40905-40924 | Msa1342600:CDS | 35.0% | |
| AAATCCAGTAAAGTCCACTC+AGG | + | tig0005911:36868-36887 | None:intergenic | 40.0% | |
| !! | TGCTTTGGAGCATCTATTTC+TGG | - | tig0005911:36922-36941 | Msa1342600:three_prime_UTR | 40.0% |
| TTCTGGCATTAAGCTTGTCA+CGG | - | tig0005911:36939-36958 | Msa1342600:three_prime_UTR | 40.0% | |
| CAAAACGTACGTGAGTTTCT+GGG | + | tig0005911:37115-37134 | None:intergenic | 40.0% | |
| !! | CCTGGTTTTTCATCTTCGTT+GGG | + | tig0005911:37454-37473 | None:intergenic | 40.0% |
| !! | TCCTGGTTTTTCATCTTCGT+TGG | + | tig0005911:37455-37474 | None:intergenic | 40.0% |
| !! | CCTACTCTGAAATATAGTCC+TGG | + | tig0005911:37472-37491 | None:intergenic | 40.0% |
| CCAGGACTATATTTCAGAGT+AGG | - | tig0005911:37469-37488 | Msa1342600:intron | 40.0% | |
| ! | AATCTTTCAGGTGCAATGGA+AGG | - | tig0005911:37569-37588 | Msa1342600:intron | 40.0% |
| ! | ATCTTTCAGGTGCAATGGAA+GGG | - | tig0005911:37570-37589 | Msa1342600:intron | 40.0% |
| ATATACCTCAAGCCCTCAAT+GGG | + | tig0005911:37624-37643 | None:intergenic | 40.0% | |
| AATATACCTCAAGCCCTCAA+TGG | + | tig0005911:37625-37644 | None:intergenic | 40.0% | |
| ACCATTAGAGGTGAAAGAAG+GGG | + | tig0005911:37870-37889 | None:intergenic | 40.0% | |
| GTACTACTTCATGCTTGTCT+AGG | - | tig0005911:37923-37942 | Msa1342600:intron | 40.0% | |
| !! | GGCCAAGCTGATTTTATTTG+TGG | - | tig0005911:37945-37964 | Msa1342600:intron | 40.0% |
| AAACCACTAACACCTTGACA+AGG | + | tig0005911:37978-37997 | None:intergenic | 40.0% | |
| TTAGTGGTTTCAATCGCTTC+AGG | - | tig0005911:37988-38007 | Msa1342600:intron | 40.0% | |
| CAGGAACAAAAATGCTCCAT+TGG | - | tig0005911:38007-38026 | Msa1342600:intron | 40.0% | |
| GAACAAAAATGCTCCATTGG+AGG | - | tig0005911:38010-38029 | Msa1342600:intron | 40.0% | |
| GAAGCCTAAGTATGTTCTCA+TGG | - | tig0005911:38082-38101 | Msa1342600:intron | 40.0% | |
| !! | AAATTTGCTGGTGGGTTTCT+GGG | - | tig0005911:38125-38144 | Msa1342600:CDS | 40.0% |
| GATAATTCATGGCCACTAGA+CGG | + | tig0005911:38166-38185 | None:intergenic | 40.0% | |
| TGGCCATGAATTATCAAGCT+CGG | - | tig0005911:38171-38190 | Msa1342600:intron | 40.0% | |
| ! | CATCCGAGCTTGATAATTCA+TGG | + | tig0005911:38177-38196 | None:intergenic | 40.0% |
| CATGAATTATCAAGCTCGGA+TGG | - | tig0005911:38175-38194 | Msa1342600:intron | 40.0% | |
| CATATGGCCTTCCTCAATTT+CGG | - | tig0005911:38216-38235 | Msa1342600:intron | 40.0% | |
| AAAACACGCATCCGAAATTG+AGG | + | tig0005911:38230-38249 | None:intergenic | 40.0% | |
| ! | TTCGGATGCGTGTTTTTCTT+TGG | - | tig0005911:38234-38253 | Msa1342600:intron | 40.0% |
| ! | TCGGATGCGTGTTTTTCTTT+GGG | - | tig0005911:38235-38254 | Msa1342600:intron | 40.0% |
| ! | GAGCTCTAACTACTGAAGTA+AGG | - | tig0005911:38258-38277 | Msa1342600:intron | 40.0% |
| !! | TGAGTTGGTAACGGATATGA+GGG | + | tig0005911:38390-38409 | None:intergenic | 40.0% |
| !! | ATGAGTTGGTAACGGATATG+AGG | + | tig0005911:38391-38410 | None:intergenic | 40.0% |
| ATATCCGTTACCAACTCATG+AGG | - | tig0005911:38392-38411 | Msa1342600:intron | 40.0% | |
| !! | TCAACCTCATGAGTTGGTAA+CGG | + | tig0005911:38399-38418 | None:intergenic | 40.0% |
| ! | CAGCTGACACTTTTCATTAG+TGG | + | tig0005911:38580-38599 | None:intergenic | 40.0% |
| !! | CACTAATGAAAAGTGTCAGC+TGG | - | tig0005911:38578-38597 | Msa1342600:intron | 40.0% |
| AGCAAAAACAACATACCGGT+GGG | + | tig0005911:38641-38660 | None:intergenic | 40.0% | |
| AGCGATGATGAAAAGAGCTA+CGG | - | tig0005911:38760-38779 | Msa1342600:intron | 40.0% | |
| TGATCATACAGCATACCACT+TGG | + | tig0005911:39198-39217 | None:intergenic | 40.0% | |
| GCAAACTCTCTCATAGTCAT+CGG | + | tig0005911:39241-39260 | None:intergenic | 40.0% | |
| AGATATGGAACCTTCTCCTT+TGG | + | tig0005911:39270-39289 | None:intergenic | 40.0% | |
| ! | TTGTGCTTGCTTGCCTTTTT+AGG | - | tig0005911:39343-39362 | Msa1342600:intron | 40.0% |
| ! | TGTGCTTGCTTGCCTTTTTA+GGG | - | tig0005911:39344-39363 | Msa1342600:intron | 40.0% |
| !! | TTTTTAGGGGGCAAACTTCA+GGG | - | tig0005911:39358-39377 | Msa1342600:intron | 40.0% |
| ! | TCTAAAATCTGGAAAGCCGT+TGG | - | tig0005911:39445-39464 | Msa1342600:CDS | 40.0% |
| TTGTGTCCACTGTTGTAACA+AGG | - | tig0005911:39712-39731 | Msa1342600:CDS | 40.0% | |
| TGTGTCCACTGTTGTAACAA+GGG | - | tig0005911:39713-39732 | Msa1342600:CDS | 40.0% | |
| CGAATAACAACCTGGTTATG+AGG | + | tig0005911:39744-39763 | None:intergenic | 40.0% | |
| CACAACTTCGAATAACAACC+TGG | + | tig0005911:39752-39771 | None:intergenic | 40.0% | |
| GAATGCTAAGAACTCTGTCT+TGG | + | tig0005911:40038-40057 | None:intergenic | 40.0% | |
| TTAGCATTCGAGAGAATGCA+AGG | - | tig0005911:40049-40068 | Msa1342600:CDS | 40.0% | |
| ACACATACCTCTGTTTGACA+GGG | + | tig0005911:40110-40129 | None:intergenic | 40.0% | |
| AACACATACCTCTGTTTGAC+AGG | + | tig0005911:40111-40130 | None:intergenic | 40.0% | |
| ! | ACAGAGGTATGTGTTCAAAC+TGG | - | tig0005911:40116-40135 | Msa1342600:intron | 40.0% |
| ACTGCTCAATAACTCTCCTA+AGG | - | tig0005911:40408-40427 | Msa1342600:CDS | 40.0% | |
| CTGCTCAATAACTCTCCTAA+GGG | - | tig0005911:40409-40428 | Msa1342600:CDS | 40.0% | |
| AAATTCTGGACTGATCCCTT+AGG | + | tig0005911:40427-40446 | None:intergenic | 40.0% | |
| ! | GGGATCAGTCCAGAATTTTT+AGG | - | tig0005911:40429-40448 | Msa1342600:CDS | 40.0% |
| TAATGTGTATCCAAGGGCAA+GGG | + | tig0005911:40663-40682 | None:intergenic | 40.0% | |
| CCAAACCTAATGTGTATCCA+AGG | + | tig0005911:40670-40689 | None:intergenic | 40.0% | |
| CCTTGGATACACATTAGGTT+TGG | - | tig0005911:40667-40686 | Msa1342600:intron | 40.0% | |
| TTAAAGGGGAGAGTTGTCAA+AGG | + | tig0005911:40719-40738 | None:intergenic | 40.0% | |
| GACAACTTGGGTACTTAAAG+GGG | + | tig0005911:40733-40752 | None:intergenic | 40.0% | |
| CTGGATTTGTATTCTGGGTG+TGG | - | tig0005911:36880-36899 | Msa1342600:three_prime_UTR | 45.0% | |
| !! | ATGTCCACTGGTCTTTGCTT+TGG | - | tig0005911:36907-36926 | Msa1342600:three_prime_UTR | 45.0% |
| CCAAAACGTACGTGAGTTTC+TGG | + | tig0005911:37116-37135 | None:intergenic | 45.0% | |
| ! | CCAGAAACTCACGTACGTTT+TGG | - | tig0005911:37113-37132 | Msa1342600:CDS | 45.0% |
| AATTCAGGTGAGGAATGAGC+CGG | - | tig0005911:37231-37250 | Msa1342600:intron | 45.0% | |
| TTGAATGCTGGTGAAGAAGC+TGG | - | tig0005911:37340-37359 | Msa1342600:intron | 45.0% | |
| AGATGATTCACCTGACTCTG+AGG | - | tig0005911:37387-37406 | Msa1342600:intron | 45.0% | |
| !! | ACCTGACTCTGAGGTATTTG+AGG | - | tig0005911:37396-37415 | Msa1342600:intron | 45.0% |
| ACCTCAAATACCTCAGAGTC+AGG | + | tig0005911:37400-37419 | None:intergenic | 45.0% | |
| CCCAACGAAGATGAAAAACC+AGG | - | tig0005911:37451-37470 | Msa1342600:intron | 45.0% | |
| ACCCCTTCTTTCACCTCTAA+TGG | - | tig0005911:37866-37885 | Msa1342600:intron | 45.0% | |
| !! | GAAATTTGCTGGTGGGTTTC+TGG | - | tig0005911:38124-38143 | Msa1342600:CDS | 45.0% |
| !! | AATTTGCTGGTGGGTTTCTG+GGG | - | tig0005911:38126-38145 | Msa1342600:CDS | 45.0% |
| ! | CGGATGCGTGTTTTTCTTTG+GGG | - | tig0005911:38236-38255 | Msa1342600:intron | 45.0% |
| CTGGATTCAACCTCATGAGT+TGG | + | tig0005911:38405-38424 | None:intergenic | 45.0% | |
| ! | TGGCCAAGGCATTATACCTT+GGG | - | tig0005911:38598-38617 | Msa1342600:CDS | 45.0% |
| GAGCAAAAACAACATACCGG+TGG | + | tig0005911:38642-38661 | None:intergenic | 45.0% | |
| GCGATGATGAAAAGAGCTAC+GGG | - | tig0005911:38761-38780 | Msa1342600:intron | 45.0% | |
| ATGCAGTTCATATATGCGGC+CGG | + | tig0005911:38998-39017 | None:intergenic | 45.0% | |
| GCCGAATAATTCACCATCTC+TGG | + | tig0005911:39159-39178 | None:intergenic | 45.0% | |
| GAGAGTTTGCCACATTCCAA+AGG | - | tig0005911:39251-39270 | Msa1342600:CDS | 45.0% | |
| TTGCCACATTCCAAAGGAGA+AGG | - | tig0005911:39257-39276 | Msa1342600:CDS | 45.0% | |
| !! | GAACCTTCTCCTTTGGAATG+TGG | + | tig0005911:39263-39282 | None:intergenic | 45.0% |
| ! | GTGCTTGCTTGCCTTTTTAG+GGG | - | tig0005911:39345-39364 | Msa1342600:intron | 45.0% |
| !! | TGCTTGCTTGCCTTTTTAGG+GGG | - | tig0005911:39346-39365 | Msa1342600:intron | 45.0% |
| CTGAAGTTTGCCCCCTAAAA+AGG | + | tig0005911:39359-39378 | None:intergenic | 45.0% | |
| !! | CTTTTTAGGGGGCAAACTTC+AGG | - | tig0005911:39357-39376 | Msa1342600:intron | 45.0% |
| GCTGAATACAACAGGCCATT+TGG | - | tig0005911:39669-39688 | Msa1342600:CDS | 45.0% | |
| AACAACCTGGTTATGAGGCT+CGG | + | tig0005911:39739-39758 | None:intergenic | 45.0% | |
| GTTTGGACCTGTTGTGTAAG+TGG | - | tig0005911:39920-39939 | Msa1342600:intron | 45.0% | |
| ! | AGTACTGCCACTTACACAAC+AGG | + | tig0005911:39930-39949 | None:intergenic | 45.0% |
| GATGGAGAAGAGCCTTGAAA+TGG | + | tig0005911:40011-40030 | None:intergenic | 45.0% | |
| CTAAGAACTCTGTCTTGGTC+TGG | + | tig0005911:40033-40052 | None:intergenic | 45.0% | |
| CCACAAAGCTTATAGCAGTC+TGG | + | tig0005911:40087-40106 | None:intergenic | 45.0% | |
| CCAGACTGCTATAAGCTTTG+TGG | - | tig0005911:40084-40103 | Msa1342600:intron | 45.0% | |
| ATGTGCAGGTACATGCAAGT+TGG | - | tig0005911:40614-40633 | Msa1342600:intron | 45.0% | |
| CTAATGTGTATCCAAGGGCA+AGG | + | tig0005911:40664-40683 | None:intergenic | 45.0% | |
| CTTGCCCTTGGATACACATT+AGG | - | tig0005911:40662-40681 | Msa1342600:intron | 45.0% | |
| !! | ATTCTAGGACTCTCCGATGA+CGG | - | tig0005911:40692-40711 | Msa1342600:intron | 45.0% |
| AGTTGTCAAAGGACCGTCAT+CGG | + | tig0005911:40708-40727 | None:intergenic | 45.0% | |
| ! | TAGGCCTGAGTGGACTTTAC+TGG | - | tig0005911:36861-36880 | Msa1342600:three_prime_UTR | 50.0% |
| TGCTCCAAAGCAAAGACCAG+TGG | + | tig0005911:36914-36933 | None:intergenic | 50.0% | |
| GAAGAAGCTGGTGAAGAAGC+TGG | - | tig0005911:37352-37371 | Msa1342600:intron | 50.0% | |
| GGGCTCCCATGTATCATAAC+TGG | + | tig0005911:37604-37623 | None:intergenic | 50.0% | |
| TGATACATGGGAGCCCATTG+AGG | - | tig0005911:37608-37627 | Msa1342600:intron | 50.0% | |
| GATACATGGGAGCCCATTGA+GGG | - | tig0005911:37609-37628 | Msa1342600:intron | 50.0% | |
| GTGGTGAGACTTACAGGAAG+AGG | + | tig0005911:37823-37842 | None:intergenic | 50.0% | |
| TGAGGAGTGGTGAGACTTAC+AGG | + | tig0005911:37829-37848 | None:intergenic | 50.0% | |
| CCACTAACACCTTGACAAGG+TGG | + | tig0005911:37975-37994 | None:intergenic | 50.0% | |
| ! | CCACCTTGTCAAGGTGTTAG+TGG | - | tig0005911:37972-37991 | Msa1342600:intron | 50.0% |
| !! | TTTCTGGGGCGTTATGCTGT+AGG | - | tig0005911:38140-38159 | Msa1342600:CDS | 50.0% |
| TTATGCTGTAGGCCGTCTAG+TGG | - | tig0005911:38151-38170 | Msa1342600:CDS | 50.0% | |
| TCAAGCTCGGATGGGAATGA+TGG | - | tig0005911:38184-38203 | Msa1342600:intron | 50.0% | |
| ATGATGGCTGCAGGGTCATA+TGG | - | tig0005911:38200-38219 | Msa1342600:intron | 50.0% | |
| CACGCATCCGAAATTGAGGA+AGG | + | tig0005911:38226-38245 | None:intergenic | 50.0% | |
| CTCAGTAGGGATGACTGATC+TGG | + | tig0005911:38424-38443 | None:intergenic | 50.0% | |
| !! | TGAAAAGTGTCAGCTGGCCA+AGG | - | tig0005911:38584-38603 | Msa1342600:CDS | 50.0% |
| ! | CTGGCCAAGGCATTATACCT+TGG | - | tig0005911:38597-38616 | Msa1342600:CDS | 50.0% |
| ! | GGCCAAGGCATTATACCTTG+GGG | - | tig0005911:38599-38618 | Msa1342600:CDS | 50.0% |
| GTCCCCAAGGTATAATGCCT+TGG | + | tig0005911:38604-38623 | None:intergenic | 50.0% | |
| GATCATCAATTGCGTCCCCA+AGG | + | tig0005911:38617-38636 | None:intergenic | 50.0% | |
| ! | CGCAATTGATGATCTCCCAC+CGG | - | tig0005911:38623-38642 | Msa1342600:CDS | 50.0% |
| GACTCTCAAAGTGCACCAAG+TGG | - | tig0005911:39180-39199 | Msa1342600:intron | 50.0% | |
| CTTTAACTAGCACACCCTCG+AGG | + | tig0005911:39385-39404 | None:intergenic | 50.0% | |
| ! | ACAGGCCATTTGGTCGACTT+TGG | - | tig0005911:39679-39698 | Msa1342600:CDS | 50.0% |
| ! | GCCATTTGGTCGACTTTGGT+GGG | - | tig0005911:39683-39702 | Msa1342600:CDS | 50.0% |
| TCCCACCAAAGTCGACCAAA+TGG | + | tig0005911:39687-39706 | None:intergenic | 50.0% | |
| GAGGGTAGCATAAGTGGCAT+TGG | + | tig0005911:39794-39813 | None:intergenic | 50.0% | |
| CAATGGGAGGGTAGCATAAG+TGG | + | tig0005911:39800-39819 | None:intergenic | 50.0% | |
| GAACTCTGTCTTGGTCTGGA+TGG | + | tig0005911:40029-40048 | None:intergenic | 50.0% | |
| CGAGAGAATGCAAGGCTACA+AGG | - | tig0005911:40057-40076 | Msa1342600:CDS | 50.0% | |
| TTTGTGGCCCTGTCAAACAG+AGG | - | tig0005911:40100-40119 | Msa1342600:intron | 50.0% | |
| !! | AAGGACGGGCTAGACAACTT+GGG | + | tig0005911:40745-40764 | None:intergenic | 50.0% |
| !! | AAAGGACGGGCTAGACAACT+TGG | + | tig0005911:40746-40765 | None:intergenic | 50.0% |
| TGACTTGAAGAGATGGGCCG+TGG | - | tig0005911:37049-37068 | Msa1342600:exon | 55.0% | |
| GGATGGGAATGATGGCTGCA+GGG | - | tig0005911:38192-38211 | Msa1342600:intron | 55.0% | |
| GCAAACTTCAGGGACCTCGA+GGG | - | tig0005911:39368-39387 | Msa1342600:intron | 55.0% | |
| ! | GGCCATTTGGTCGACTTTGG+TGG | - | tig0005911:39682-39701 | Msa1342600:CDS | 55.0% |
| CTCGGCCCTTGTTACAACAG+TGG | + | tig0005911:39721-39740 | None:intergenic | 55.0% | |
| TATCCAAGGGCAAGGGCAAC+AGG | + | tig0005911:40656-40675 | None:intergenic | 55.0% | |
| GGGTGTGGAGCTATGTCCAC+TGG | - | tig0005911:36895-36914 | Msa1342600:three_prime_UTR | 60.0% | |
| !! | TGTGGTGGGCCACCTTGTCA+AGG | - | tig0005911:37963-37982 | Msa1342600:intron | 60.0% |
| CGGATGGGAATGATGGCTGC+AGG | - | tig0005911:38191-38210 | Msa1342600:intron | 60.0% | |
| GGCAAACTTCAGGGACCTCG+AGG | - | tig0005911:39367-39386 | Msa1342600:intron | 60.0% | |
| AAGGGCCGAGCCTCATAACC+AGG | - | tig0005911:39731-39750 | Msa1342600:CDS | 60.0% | |
| GTTCCTGTTGCCCTTGCCCT+TGG | - | tig0005911:40650-40669 | Msa1342600:intron | 60.0% | |
| GGGAGCCCATTGAGGGCTTG+AGG | - | tig0005911:37616-37635 | Msa1342600:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0005911 | gene | 36856 | 41003 | 36856 | ID=Msa1342600;Name=Msa1342600 |
| tig0005911 | mRNA | 36856 | 41003 | 36856 | ID=Msa1342600-mRNA-1;Parent=Msa1342600;Name=Msa1342600-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.92|0.86|1|1|1|15|207|577 |
| tig0005911 | exon | 36856 | 37237 | 36856 | ID=Msa1342600-mRNA-1:exon:3652;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 37738 | 37841 | 37738 | ID=Msa1342600-mRNA-1:exon:3651;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 38107 | 38176 | 38107 | ID=Msa1342600-mRNA-1:exon:3650;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 38268 | 38311 | 38268 | ID=Msa1342600-mRNA-1:exon:3649;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 38393 | 38494 | 38393 | ID=Msa1342600-mRNA-1:exon:3648;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 38581 | 38699 | 38581 | ID=Msa1342600-mRNA-1:exon:3647;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 39027 | 39114 | 39027 | ID=Msa1342600-mRNA-1:exon:3646;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 39215 | 39301 | 39215 | ID=Msa1342600-mRNA-1:exon:3645;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 39410 | 39478 | 39410 | ID=Msa1342600-mRNA-1:exon:3644;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 39585 | 39914 | 39585 | ID=Msa1342600-mRNA-1:exon:3643;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 40031 | 40097 | 40031 | ID=Msa1342600-mRNA-1:exon:3642;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 40222 | 40280 | 40222 | ID=Msa1342600-mRNA-1:exon:3641;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 40373 | 40621 | 40373 | ID=Msa1342600-mRNA-1:exon:3640;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 40735 | 40800 | 40735 | ID=Msa1342600-mRNA-1:exon:3639;Parent=Msa1342600-mRNA-1 |
| tig0005911 | exon | 40899 | 41003 | 40899 | ID=Msa1342600-mRNA-1:exon:3638;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 40899 | 41003 | 40899 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 40735 | 40800 | 40735 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 40373 | 40621 | 40373 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 40222 | 40280 | 40222 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 40031 | 40097 | 40031 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 39585 | 39914 | 39585 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 39410 | 39478 | 39410 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 39215 | 39301 | 39215 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 39027 | 39114 | 39027 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 38581 | 38699 | 38581 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 38393 | 38494 | 38393 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 38268 | 38311 | 38268 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 38107 | 38176 | 38107 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 37738 | 37841 | 37738 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | CDS | 37063 | 37237 | 37063 | ID=Msa1342600-mRNA-1:cds;Parent=Msa1342600-mRNA-1 |
| tig0005911 | three_prime_UTR | 36856 | 37062 | 36856 | ID=Msa1342600-mRNA-1:three_prime_utr;Parent=Msa1342600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
