AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0439080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439080 MtrunA17_Chr7g0215341 94.103 831 41 2 1 827 1 827 0.0 1590
Msa0439080 MtrunA17_Chr6g0484831 90.060 835 75 3 1 827 1 835 0.0 1537
Msa0439080 MtrunA17_Chr5g0406641 91.018 835 66 4 1 826 1 835 0.0 1517
Msa0439080 MtrunA17_Chr4g0007641 79.265 844 157 7 1 827 1 843 0.0 1357
Msa0439080 MtrunA17_Chr6g0464681 69.329 864 190 9 1 827 1 826 0.0 1177
Msa0439080 MtrunA17_Chr6g0486931 55.115 782 314 11 57 811 146 917 0.0 871
Msa0439080 MtrunA17_Chr8g0369361 51.100 773 352 10 57 810 9 774 0.0 786
Msa0439080 MtrunA17_Chr5g0427891 59.475 343 138 1 469 811 1 342 2.40e-140 419
Msa0439080 MtrunA17_Chr2g0302601 33.777 376 205 8 429 794 1215 1556 2.36e-55 207
Msa0439080 MtrunA17_Chr6g0477371 33.777 376 205 8 429 794 1206 1547 4.04e-54 204
Msa0439080 MtrunA17_Chr4g0017221 33.511 376 206 8 429 794 1190 1531 9.01e-54 203
Msa0439080 MtrunA17_Chr8g0364091 44.068 177 86 6 125 289 37 212 1.41e-36 138
Msa0439080 MtrunA17_Chr8g0364111 77.273 66 15 0 745 810 3 68 6.54e-29 110
Msa0439080 MtrunA17_Chr5g0427881 58.462 65 27 0 380 444 39 103 6.91e-22 91.3
Msa0439080 MtrunA17_Chr5g0427871 47.115 104 46 2 57 151 38 141 8.00e-22 92.4
Msa0439080 MtrunA17_Chr3g0087051 34.545 165 84 4 638 794 2 150 1.32e-20 89.4
Msa0439080 MtrunA17_Chr2g0306841 36.364 88 56 0 544 631 15 102 1.73e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439080 AT1G80740.1 51.677 805 334 11 42 814 4 785 0.0 814
Msa0439080 AT1G69770.1 51.551 838 361 14 1 807 1 824 0.0 813
Msa0439080 AT4G19020.1 50.582 773 349 8 57 810 523 1281 0.0 790
Msa0439080 AT4G19020.2 50.582 773 349 8 57 810 475 1233 0.0 790
Msa0439080 AT4G14140.3 35.310 371 206 7 429 794 1168 1509 9.17e-57 212
Msa0439080 AT4G14140.1 35.310 371 206 7 429 794 1168 1509 9.17e-57 212
Msa0439080 AT4G14140.2 35.310 371 206 7 429 794 1194 1535 1.68e-56 211
Msa0439080 AT4G08990.1 35.561 374 201 9 429 794 1161 1502 5.97e-55 207
Msa0439080 AT4G13610.1 34.409 372 196 8 429 794 1070 1399 1.07e-53 203
Msa0439080 AT5G49160.2 32.891 377 207 9 429 794 1095 1436 2.92e-50 192
Msa0439080 AT5G49160.1 32.891 377 207 9 429 794 1183 1524 3.80e-50 192

Find 203 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTTGCTGGTGGGTTTC+TGG 0.008640 3_3:-4624594 Msa0439080:CDS
ACTTTACTGGATTTGTATTC+TGG 0.102309 3_3:-4625828 Msa0439080:CDS
CCAAAACGTACGTGAGTTTC+TGG 0.160369 3_3:+4625589 None:intergenic
TTCTAGGCCCTGAATATTAT+TGG 0.195110 3_3:+4621867 None:intergenic
TGAAGTCTCACTTTCTATTT+TGG 0.212259 3_3:+4625950 None:intergenic
TTGAACCTGCTCAGTGTAAA+TGG 0.244851 3_3:+4628051 None:intergenic
TCAACACTTTCAAATGAATC+TGG 0.268377 3_3:-4625930 Msa0439080:CDS
ACATTCATTTATACAATTCT+AGG 0.285423 3_3:+4621851 None:intergenic
TAGACAACTTGGGTACTTAA+AGG 0.288833 3_3:+4621993 None:intergenic
TGTGAGAAGTTTGTACTAAA+TGG 0.291004 3_3:-4625407 Msa0439080:CDS
ACATTAGGTTTGGCAATTCT+AGG 0.297456 3_3:-4622048 Msa0439080:CDS
TAGGCCTGAGTGGACTTTAC+TGG 0.302719 3_3:-4625841 Msa0439080:CDS
CTGATGATTATGCAAGATTC+TGG 0.311181 3_3:-4621820 Msa0439080:three_prime_UTR
GATTCTGGAAACATAAAATA+TGG 0.313320 3_3:-4621805 Msa0439080:three_prime_UTR
CTTGCCCTTGGATACACATT+AGG 0.317533 3_3:-4622063 Msa0439080:CDS
TTCGATTTCTTTCTTCTAGA+AGG 0.320245 3_3:+4627747 None:intergenic
TTCTTCAACCGGAGATTGTT+TGG 0.326628 3_3:+4627788 None:intergenic
AAATTTGCTGGTGGGTTTCT+GGG 0.327523 3_3:-4624593 Msa0439080:CDS
CCAGACTGCTATAAGCTTTG+TGG 0.329709 3_3:-4622641 Msa0439080:CDS
AACATTTGAGAAAGTTATAT+AGG 0.344153 3_3:+4626087 None:intergenic
CATCCGAGCTTGATAATTCA+TGG 0.344162 3_3:+4624544 None:intergenic
ATCCTTTAGATTGTTTAGTT+AGG 0.347736 3_3:-4626294 Msa0439080:CDS
CATATGGCCTTCCTCAATTT+CGG 0.349601 3_3:-4624502 Msa0439080:CDS
CCACCTTGTCAAGGTGTTAG+TGG 0.350266 3_3:-4624746 Msa0439080:CDS
ATGTCCACTGGTCTTTGCTT+TGG 0.352341 3_3:-4625795 Msa0439080:CDS
AGATATGGAACCTTCTCCTT+TGG 0.356040 3_3:+4623458 None:intergenic
CTTTACTGGATTTGTATTCT+GGG 0.362248 3_3:-4625827 Msa0439080:CDS
TTAGTGGTTTCAATCGCTTC+AGG 0.364770 3_3:-4624730 Msa0439080:CDS
GTCAAATTAAAGAATGTAAT+AGG 0.367477 3_3:-4625860 Msa0439080:CDS
GGGCTCCCATGTATCATAAC+TGG 0.370498 3_3:+4625113 None:intergenic
TATCCAAGGGCAAGGGCAAC+AGG 0.371847 3_3:+4622072 None:intergenic
AGGAACGACTTCGTCTTGTT+TGG 0.374277 3_3:+4627833 None:intergenic
GAAACATAAAATATGGCAAA+TGG 0.375563 3_3:-4621798 Msa0439080:three_prime_UTR
GTTCCTGTTGCCCTTGCCCT+TGG 0.380094 3_3:-4622075 Msa0439080:CDS
TTCAATCTTTACCGTGTCTT+CGG 0.381407 3_3:+4626468 None:intergenic
ACCTGACTCTGAGGTATTTG+AGG 0.384130 3_3:-4625318 Msa0439080:CDS
AACACATACCTCTGTTTGAC+AGG 0.386966 3_3:+4622617 None:intergenic
GTAAAATATTGTTCTTCATC+AGG 0.390612 3_3:+4626511 None:intergenic
AAAAGAGTGTATCTAAAATC+TGG 0.397497 3_3:-4623291 Msa0439080:CDS
ACAAATGTCATAGCATAATC+TGG 0.400607 3_3:+4623174 None:intergenic
TCCAGAGATGGTGAATTATT+CGG 0.404648 3_3:-4623570 Msa0439080:intron
AGACAACTTGGGTACTTAAA+GGG 0.412259 3_3:+4621994 None:intergenic
TTGTTTGGCTTTCTTCCGTT+TGG 0.415225 3_3:+4627803 None:intergenic
CCTTGGATACACATTAGGTT+TGG 0.421810 3_3:-4622058 Msa0439080:CDS
TGGCCAAGGCATTATACCTT+GGG 0.423475 3_3:-4624120 Msa0439080:CDS
ACATTTGAGAAAGTTATATA+GGG 0.426320 3_3:+4626088 None:intergenic
GCTGAATACAACAGGCCATT+TGG 0.427862 3_3:-4623056 Msa0439080:intron
ATGATGGCTGCAGGGTCATA+TGG 0.428980 3_3:-4624518 Msa0439080:CDS
TTCCTAACTAAACAATCTAA+AGG 0.433146 3_3:+4626292 None:intergenic
TATCGTGAAGCGAAGGTTGA+TGG 0.441672 3_3:-4627418 Msa0439080:CDS
CTTCGTCGGAGAACTTATTC+CGG 0.444090 3_3:-4627694 Msa0439080:CDS
ATGAGTTGGTAACGGATATG+AGG 0.447163 3_3:+4624330 None:intergenic
TAAAGAAAACAAGGTGGAAT+GGG 0.451055 3_3:-4623325 Msa0439080:CDS
GAAACCAGTTCTTCTTCAAC+CGG 0.452190 3_3:+4627777 None:intergenic
CTAAGAACTCTGTCTTGGTC+TGG 0.452322 3_3:+4622695 None:intergenic
CTGGATTTGTATTCTGGGTG+TGG 0.458568 3_3:-4625822 Msa0439080:CDS
CTGATGAAGCACAAAAGAAA+TGG 0.459268 3_3:-4627671 Msa0439080:CDS
CTTGCATAATCATCAGTTGT+AGG 0.460358 3_3:+4621827 None:intergenic
TTTCTTACTTCAAACTCAGT+AGG 0.462655 3_3:+4624283 None:intergenic
ATCTCCGGTTGAAGAAGAAC+TGG 0.462907 3_3:-4627781 Msa0439080:CDS
CTCAGTAGGGATGACTGATC+TGG 0.468959 3_3:+4624297 None:intergenic
CAACACTTTCAAATGAATCT+GGG 0.470283 3_3:-4625929 Msa0439080:CDS
CGAATAACAACCTGGTTATG+AGG 0.471305 3_3:+4622984 None:intergenic
ATGCTATGACATTTGTTCAC+GGG 0.472626 3_3:-4623167 Msa0439080:CDS
TTTCTGGGGCGTTATGCTGT+AGG 0.473896 3_3:-4624578 Msa0439080:CDS
CGGATGGGAATGATGGCTGC+AGG 0.474115 3_3:-4624527 Msa0439080:CDS
AAAGGACGGGCTAGACAACT+TGG 0.474566 3_3:+4621982 None:intergenic
ACAGGCCATTTGGTCGACTT+TGG 0.475021 3_3:-4623046 Msa0439080:intron
AATATACCTCAAGCCCTCAA+TGG 0.475252 3_3:+4625092 None:intergenic
ACCTCAAATACCTCAGAGTC+AGG 0.475532 3_3:+4625317 None:intergenic
TTCGGCTCTGTAAAACCATT+GGG 0.476357 3_3:+4626486 None:intergenic
CCACAAAGCTTATAGCAGTC+TGG 0.481850 3_3:+4622641 None:intergenic
ACGATTCCAGTTATGATACA+TGG 0.482110 3_3:-4625119 Msa0439080:CDS
TGTGTGTGTGCAGGTGATTA+AGG 0.483671 3_3:-4626374 Msa0439080:intron
AAACATAAAATATGGCAAAT+GGG 0.485354 3_3:-4621797 Msa0439080:three_prime_UTR
GCCATTTGGTCGACTTTGGT+GGG 0.487889 3_3:-4623042 Msa0439080:CDS
CGAGAGAATGCAAGGCTACA+AGG 0.488910 3_3:-4622668 Msa0439080:CDS
ATTTCCCATTTACACTGAGC+AGG 0.490849 3_3:-4628056 None:intergenic
TTTATCAGCTGCATGGACAT+TGG 0.493693 3_3:+4625905 None:intergenic
TTCTTACTTCAAACTCAGTA+GGG 0.495616 3_3:+4624284 None:intergenic
ATATACCTCAAGCCCTCAAT+GGG 0.497888 3_3:+4625093 None:intergenic
CTTCGGCTCTGTAAAACCAT+TGG 0.499873 3_3:+4626485 None:intergenic
TCATCATCAACTACATCTAA+AGG 0.502737 3_3:+4621964 None:intergenic
GGCCATTTGGTCGACTTTGG+TGG 0.503320 3_3:-4623043 Msa0439080:CDS
GATACATGGGAGCCCATTGA+GGG 0.504051 3_3:-4625105 Msa0439080:CDS
TGCATATTCATTTATATCCA+CGG 0.506267 3_3:+4625636 None:intergenic
CACAAAAGAAATGGCCTCAC+CGG 0.507084 3_3:-4627662 Msa0439080:CDS
GAACTCTGTCTTGGTCTGGA+TGG 0.507573 3_3:+4622699 None:intergenic
AAAGAAATCGAAGCAATCTT+CGG 0.508099 3_3:-4627736 Msa0439080:CDS
GGGTGTGGAGCTATGTCCAC+TGG 0.509075 3_3:-4625807 Msa0439080:CDS
TCATCGGTGTTTAATTTCAA+AGG 0.509674 3_3:+4623503 None:intergenic
TCAGCAACTAATTGTTTACA+TGG 0.512928 3_3:-4624675 Msa0439080:CDS
CACCACAAATAAAATCAGCT+TGG 0.514779 3_3:+4624771 None:intergenic
TTAAAGAAAACAAGGTGGAA+TGG 0.515036 3_3:-4623326 Msa0439080:CDS
TCCGACGATGCATGCTTCGT+CGG 0.515548 3_3:-4627708 Msa0439080:CDS
TTAGATGTAGTTGATGATGA+TGG 0.517459 3_3:-4621961 Msa0439080:CDS
GTCCCCAAGGTATAATGCCT+TGG 0.517822 3_3:+4624117 None:intergenic
ATCTTTCAGGTGCAATGGAA+GGG 0.518544 3_3:-4625144 Msa0439080:intron
AAGAAGATGAATAGTGAAAG+CGG 0.518886 3_3:+4627935 None:intergenic
TCAAGCTCGGATGGGAATGA+TGG 0.519547 3_3:-4624534 Msa0439080:CDS
CTGGCCAAGGCATTATACCT+TGG 0.521309 3_3:-4624121 Msa0439080:CDS
CACTAATGAAAAGTGTCAGC+TGG 0.523124 3_3:-4624140 Msa0439080:CDS
AAAACACGCATCCGAAATTG+AGG 0.524141 3_3:+4624491 None:intergenic
CAAAACGTACGTGAGTTTCT+GGG 0.525514 3_3:+4625590 None:intergenic
TCGTTCCTCATTCTTCCAAA+CGG 0.526193 3_3:-4627818 Msa0439080:CDS
TTATAATCTTTCAGGTGCAA+TGG 0.528275 3_3:-4625149 Msa0439080:intron
GAAGCCTAAGTATGTTCTCA+TGG 0.528299 3_3:-4624636 Msa0439080:CDS
AACAACCTGGTTATGAGGCT+CGG 0.528328 3_3:+4622989 None:intergenic
AATCTTTCAGGTGCAATGGA+AGG 0.528541 3_3:-4625145 Msa0439080:intron
TCCCACCAAAGTCGACCAAA+TGG 0.528934 3_3:+4623041 None:intergenic
CGATTATTTATAAATGAAGC+GGG 0.529429 3_3:+4627970 None:intergenic
CATGAATTATCAAGCTCGGA+TGG 0.529786 3_3:-4624543 Msa0439080:CDS
GAAGAAAGCCAAACAATCTC+CGG 0.530553 3_3:-4627796 Msa0439080:CDS
TTCTTCCGTTTGGAAGAATG+AGG 0.531258 3_3:+4627813 None:intergenic
ACAGATTCTGATTTGAATGC+TGG 0.534166 3_3:-4625374 Msa0439080:CDS
ATCAACTACATCTAAAGGAC+GGG 0.535962 3_3:+4621969 None:intergenic
CCAAACCTAATGTGTATCCA+AGG 0.536081 3_3:+4622058 None:intergenic
GAGTGAGGATGAAAGTTTGA+AGG 0.536508 3_3:-4627452 Msa0439080:CDS
TTGCCACATTCCAAAGGAGA+AGG 0.538842 3_3:-4623468 Msa0439080:intron
AGCAGGTTCAACAAAAGTGC+GGG 0.539930 3_3:-4628039 Msa0439080:five_prime_UTR
ATCGTGAAGCGAAGGTTGAT+GGG 0.542081 3_3:-4627417 Msa0439080:CDS
TATATCAGATTAAAGAGAAG+TGG 0.544554 3_3:-4623907 Msa0439080:intron
TTCTTGCATTAAGCTTGTCA+CGG 0.545328 3_3:-4625763 Msa0439080:intron
GCGATTATTTATAAATGAAG+CGG 0.548121 3_3:+4627969 None:intergenic
GAATGCTAAGAACTCTGTCT+TGG 0.555016 3_3:+4622690 None:intergenic
CTGGATTCAACCTCATGAGT+TGG 0.555366 3_3:+4624316 None:intergenic
GAACCTTCTCCTTTGGAATG+TGG 0.555858 3_3:+4623465 None:intergenic
GTGGTGAGACTTACAGGAAG+AGG 0.556985 3_3:+4624898 None:intergenic
ATGTGCAGGTACATGCAAGT+TGG 0.560046 3_3:-4622111 Msa0439080:intron
CTCACTCGTTCTTAGTGTAC+CGG 0.561833 3_3:+4627643 None:intergenic
CGTTGTCAAAGGACCGTCAT+CGG 0.561991 3_3:+4622020 None:intergenic
AGACTACTCTCTATTTGCTA+TGG 0.562696 3_3:-4625290 Msa0439080:CDS
TCTAAAATCTGGAAAGCCGT+TGG 0.563755 3_3:-4623280 Msa0439080:intron
AGCGATGATGAAAAGAGCTA+CGG 0.565697 3_3:-4623958 Msa0439080:CDS
AAGGGCCGAGCCTCATAACC+AGG 0.568054 3_3:-4622994 Msa0439080:intron
ATGAATTATCAAGCTCGGAT+GGG 0.571223 3_3:-4624542 Msa0439080:CDS
TGTGGTGGGCCACCTTGTCA+AGG 0.574035 3_3:-4624755 Msa0439080:CDS
TTGTGTCCACTGTTGTAACA+AGG 0.575348 3_3:-4623013 Msa0439080:CDS
TGAAAAGTGTCAGCTGGCCA+AGG 0.575456 3_3:-4624134 Msa0439080:CDS
AATTTGCTGGTGGGTTTCTG+GGG 0.576721 3_3:-4624592 Msa0439080:CDS
TTGAATGCTGGTGAAGAAGC+TGG 0.577481 3_3:-4625362 Msa0439080:CDS
TTCTCCATGAGAACATACTT+AGG 0.578027 3_3:+4624632 None:intergenic
CGCAATTGATGATCTCCCAC+CGG 0.580227 3_3:-4624095 Msa0439080:intron
CCTACTCTGAAATATAGTCC+TGG 0.581965 3_3:+4625245 None:intergenic
GGACTACATTGCTAAGATTG+TGG 0.583306 3_3:-4626548 Msa0439080:CDS
CTAATGTGTATCCAAGGGCA+AGG 0.584216 3_3:+4622064 None:intergenic
TGATACATGGGAGCCCATTG+AGG 0.584875 3_3:-4625106 Msa0439080:CDS
TGAAAAGACATGGATTAATG+AGG 0.588868 3_3:+4621922 None:intergenic
GACAACTTGGGTACTTAAAG+GGG 0.589664 3_3:+4621995 None:intergenic
TTAGCATTCGAGAGAATGCA+AGG 0.591436 3_3:-4622676 Msa0439080:CDS
GCGATGATGAAAAGAGCTAC+GGG 0.591951 3_3:-4623957 Msa0439080:CDS
GCAAACTCTCTCATAGTCAT+CGG 0.593163 3_3:+4623487 None:intergenic
TCCGACGAAGCATGCATCGT+CGG 0.593618 3_3:+4627707 None:intergenic
TTTAAGTCTACTGAAAGAGT+GGG 0.594108 3_3:-4625438 Msa0439080:CDS
TGACTTGAAGAGATGGGCCG+TGG 0.594840 3_3:-4625653 Msa0439080:intron
TGGCCATGAATTATCAAGCT+CGG 0.597417 3_3:-4624547 Msa0439080:CDS
CGATTCCAGTTATGATACAT+GGG 0.597731 3_3:-4625118 Msa0439080:CDS
GGGAGCCCATTGAGGGCTTG+AGG 0.601086 3_3:-4625098 Msa0439080:intron
GATAATTCATGGCCACTAGA+CGG 0.606811 3_3:+4624555 None:intergenic
ATTCTAGGACTCTCCGATGA+CGG 0.608856 3_3:-4622033 Msa0439080:CDS
TGCAGGTGATTAAGGACCAT+GGG 0.609611 3_3:-4626366 Msa0439080:intron
TTAAAGGGGAGCGTTGTCAA+AGG 0.611103 3_3:+4622009 None:intergenic
TGAGTTGGTAACGGATATGA+GGG 0.612406 3_3:+4624331 None:intergenic
TATGCTATGACATTTGTTCA+CGG 0.613180 3_3:-4623168 Msa0439080:CDS
GGCAAACTTCAGGGACCTCG+AGG 0.614201 3_3:-4623358 Msa0439080:CDS
GATCATCAATTGCGTCCCCA+AGG 0.614386 3_3:+4624104 None:intergenic
GTTTCACTATCGTGAAGCGA+AGG 0.614568 3_3:-4627425 Msa0439080:CDS
GAGAGTTTGCCACATTCCAA+AGG 0.615917 3_3:-4623474 Msa0439080:CDS
AGATAACAGTTGAAAAGACA+TGG 0.616171 3_3:+4621912 None:intergenic
CATCAACTACATCTAAAGGA+CGG 0.616327 3_3:+4621968 None:intergenic
AATTCAGGTGAGGAATGAGC+CGG 0.616828 3_3:-4625471 Msa0439080:intron
ACTTTCTCAAATGTTGACAA+TGG 0.620113 3_3:-4626079 Msa0439080:intron
TCAACCTCATGAGTTGGTAA+CGG 0.622459 3_3:+4624322 None:intergenic
TTATGCTGTAGGCCGTCTAG+TGG 0.625272 3_3:-4624567 Msa0439080:CDS
TGATCATACAGCATACCACT+TGG 0.627170 3_3:+4623530 None:intergenic
CACGCATCCGAAATTGAGGA+AGG 0.629581 3_3:+4624495 None:intergenic
GCAAACTTCAGGGACCTCGA+GGG 0.637506 3_3:-4623357 Msa0439080:CDS
CAAACCTAATGTGTATCCAA+GGG 0.638670 3_3:+4622059 None:intergenic
GGATGGGAATGATGGCTGCA+GGG 0.639348 3_3:-4624526 Msa0439080:CDS
TAATGTGTATCCAAGGGCAA+GGG 0.640727 3_3:+4622065 None:intergenic
AAGAATGTAATAGGCCTGAG+TGG 0.644520 3_3:-4625851 Msa0439080:CDS
TGCTCCAAAGCAAAGACCAG+TGG 0.647355 3_3:+4625791 None:intergenic
AAATCCAGTAAAGTCCACTC+AGG 0.651482 3_3:+4625837 None:intergenic
AGATGATTCACCTGACTCTG+AGG 0.655360 3_3:-4625327 Msa0439080:CDS
TGTGTCCACTGTTGTAACAA+GGG 0.656136 3_3:-4623012 Msa0439080:CDS
GAGCAGGTTCAACAAAAGTG+CGG 0.656242 3_3:-4628040 Msa0439080:five_prime_UTR
ACACATACCTCTGTTTGACA+GGG 0.662004 3_3:+4622618 None:intergenic
AAGGACGGGCTAGACAACTT+GGG 0.665885 3_3:+4621983 None:intergenic
ATATCCGTTACCAACTCATG+AGG 0.669953 3_3:-4624326 Msa0439080:CDS
ATGTCAAAATAGAATTCACA+AGG 0.670234 3_3:+4626124 None:intergenic
CTCGGCCCTTGTTACAACAG+TGG 0.671085 3_3:+4623007 None:intergenic
GTGCAGGTGATTAAGGACCA+TGG 0.674534 3_3:-4626367 Msa0439080:intron
GGCCAAGGCATTATACCTTG+GGG 0.678055 3_3:-4624119 Msa0439080:CDS
CATATATACATACTTAGAGG+AGG 0.681619 3_3:+4623143 None:intergenic
CCACTAACACCTTGACAAGG+TGG 0.683957 3_3:+4624746 None:intergenic
GACTCTCAAAGTGCACCAAG+TGG 0.685496 3_3:-4623545 Msa0439080:CDS
TTTGTGGCCCTGTCAAACAG+AGG 0.688111 3_3:-4622625 Msa0439080:intron
TCAAAATAGAATTCACAAGG+AGG 0.689598 3_3:+4626127 None:intergenic
TGTGCTAGTTAAAGAAAACA+AGG 0.696627 3_3:-4623334 Msa0439080:CDS
CTTTAACTAGCACACCCTCG+AGG 0.704914 3_3:+4623343 None:intergenic
GCTAGTTAAAGAAAACAAGG+TGG 0.715923 3_3:-4623331 Msa0439080:CDS
TCGTTCTTAGTGTACCGGTG+AGG 0.720228 3_3:+4627648 None:intergenic
AAACCACTAACACCTTGACA+AGG 0.729461 3_3:+4624743 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAATCATATATAAAATAA+CGG + chr3_3:4623002-4623021 None:intergenic 10.0%
!!! TTTATTTCATGTTGAAATTT+TGG - chr3_3:4622468-4622487 Msa0439080:intron 15.0%
!!! TGTTGAAAATTTTGTTTTTT+AGG - chr3_3:4622559-4622578 Msa0439080:intron 15.0%
!!! GTTGAAAATTTTGTTTTTTA+GGG - chr3_3:4622560-4622579 Msa0439080:intron 15.0%
!!! TGTTGTAAATTTTGTTTTTT+AGG - chr3_3:4622597-4622616 Msa0439080:intron 15.0%
!!! GTTGTAAATTTTGTTTTTTA+GGG - chr3_3:4622598-4622617 Msa0439080:intron 15.0%
!!! TTTTTTTTTTATGTTGATTG+TGG - chr3_3:4623777-4623796 Msa0439080:intron 15.0%
!! CTATAAATTTATAATCTTTC+AGG - chr3_3:4624615-4624634 Msa0439080:CDS 15.0%
!!! ATGAAAGATTTTGTTATAAA+TGG - chr3_3:4624832-4624851 Msa0439080:intron 15.0%
!!! TTTTGTTATAAATGGATATA+AGG - chr3_3:4624840-4624859 Msa0439080:intron 15.0%
!!! TTACTCTAAATGTTTTAAAA+TGG - chr3_3:4625378-4625397 Msa0439080:CDS 15.0%
!! CATATATTTCAATTTCAAAA+TGG + chr3_3:4627358-4627377 None:intergenic 15.0%
!! ATATAGAAGTTAGTTATAAT+AGG + chr3_3:4627414-4627433 None:intergenic 15.0%
!!! AAAAAAAAGTATGAAATCCA+AGG - chr3_3:4622912-4622931 Msa0439080:intron 20.0%
!!! TTTATGGTTATTGTTGATTT+TGG - chr3_3:4623366-4623385 Msa0439080:intron 20.0%
!!! ATGTTGATTTTATATACTAC+AGG - chr3_3:4623602-4623621 Msa0439080:intron 20.0%
!! ACATTTGAGAAAGTTATATA+GGG + chr3_3:4623687-4623706 None:intergenic 20.0%
!! AACATTTGAGAAAGTTATAT+AGG + chr3_3:4623688-4623707 None:intergenic 20.0%
!! GTCAAATTAAAGAATGTAAT+AGG - chr3_3:4623912-4623931 Msa0439080:CDS 20.0%
!!! TAATTTGCATAATGTTTCTT+TGG - chr3_3:4624041-4624060 Msa0439080:intron 20.0%
!! TTGCATAAGATAAAGTTATA+AGG + chr3_3:4624561-4624580 None:intergenic 20.0%
!!! ATAATCAATATCTTGATGAT+TGG + chr3_3:4624706-4624725 None:intergenic 20.0%
!!! TTAAGATTTGCTGTTAATTA+AGG - chr3_3:4624744-4624763 Msa0439080:CDS 20.0%
!!! TCTAAATGTTTTAAAATGGA+AGG - chr3_3:4625382-4625401 Msa0439080:CDS 20.0%
!!! TTTGAGTTTTGAATTATTCT+TGG - chr3_3:4625903-4625922 Msa0439080:CDS 20.0%
!! TATAATTAGAATTGTGTATG+TGG - chr3_3:4626087-4626106 Msa0439080:CDS 20.0%
!! CATAATATCAATTCAAGATA+TGG + chr3_3:4626332-4626351 None:intergenic 20.0%
!!! TTTTAAAGAGGTTTTACAAT+GGG + chr3_3:4626863-4626882 None:intergenic 20.0%
!!! AATACAACATTGTTTTAAAG+AGG + chr3_3:4626875-4626894 None:intergenic 20.0%
!! ATTTCAATTTCAAAATGGAA+GGG + chr3_3:4627353-4627372 None:intergenic 20.0%
!! TATTTCAATTTCAAAATGGA+AGG + chr3_3:4627354-4627373 None:intergenic 20.0%
!!! ATAATAGGTTTATCAGTTTT+TGG + chr3_3:4627399-4627418 None:intergenic 20.0%
!! TTAGGTGTAATATTTCTTAT+TGG - chr3_3:4627494-4627513 Msa0439080:intron 20.0%
!! TTCCATTATTATGTATATCA+TGG - chr3_3:4627617-4627636 Msa0439080:intron 20.0%
!!! TTTTTAAGCCAATAATATTC+AGG - chr3_3:4627897-4627916 Msa0439080:five_prime_UTR 20.0%
!!! TTTTAAGCCAATAATATTCA+GGG - chr3_3:4627898-4627917 Msa0439080:five_prime_UTR 20.0%
!! ACATTCATTTATACAATTCT+AGG + chr3_3:4627924-4627943 None:intergenic 20.0%
!! AAACATAAAATATGGCAAAT+GGG - chr3_3:4627975-4627994 Msa0439080:five_prime_UTR 20.0%
! CGATTATTTATAAATGAAGC+GGG + chr3_3:4621805-4621824 None:intergenic 25.0%
! GCGATTATTTATAAATGAAG+CGG + chr3_3:4621806-4621825 None:intergenic 25.0%
!!! TGTTGAAATTTTGGTGTTTT+AGG - chr3_3:4622477-4622496 Msa0439080:intron 25.0%
!!! GTTGAAATTTTGGTGTTTTA+GGG - chr3_3:4622478-4622497 Msa0439080:intron 25.0%
!! GCTTAAAATTGTGTGTTTTA+TGG - chr3_3:4622669-4622688 Msa0439080:CDS 25.0%
!! TTCATTTCTTTGATTTCTTG+TGG - chr3_3:4622692-4622711 Msa0439080:CDS 25.0%
! TTGATTTCTTGTGGAAAATT+TGG - chr3_3:4622701-4622720 Msa0439080:CDS 25.0%
!! CATGTTGAAAAATGTGTTTT+AGG - chr3_3:4623020-4623039 Msa0439080:CDS 25.0%
! GTAAAATATTGTTCTTCATC+AGG + chr3_3:4623264-4623283 None:intergenic 25.0%
! ATCCTTTAGATTGTTTAGTT+AGG - chr3_3:4623478-4623497 Msa0439080:CDS 25.0%
! TTCCTAACTAAACAATCTAA+AGG + chr3_3:4623483-4623502 None:intergenic 25.0%
! ATGTCAAAATAGAATTCACA+AGG + chr3_3:4623651-4623670 None:intergenic 25.0%
! TGCATATTCATTTATATCCA+CGG + chr3_3:4624139-4624158 None:intergenic 25.0%
! AAAAATCTAGTACTAAGCAA+CGG + chr3_3:4625338-4625357 None:intergenic 25.0%
! GAAATTTACAATCACAACAT+GGG + chr3_3:4625558-4625577 None:intergenic 25.0%
! AGAAATTTACAATCACAACA+TGG + chr3_3:4625559-4625578 None:intergenic 25.0%
! TGTTTGATAAAAGAAAACCA+AGG + chr3_3:4625778-4625797 None:intergenic 25.0%
!!! TTGGTTTTCTTTTATCAAAC+AGG - chr3_3:4625777-4625796 Msa0439080:CDS 25.0%
!!! TATTTTTGAAAATCAGTACG+AGG + chr3_3:4625847-4625866 None:intergenic 25.0%
! TATATCAGATTAAAGAGAAG+TGG - chr3_3:4625865-4625884 Msa0439080:CDS 25.0%
!!! TTCTTGGTTGTTTTCTTTTT+TGG - chr3_3:4625919-4625938 Msa0439080:CDS 25.0%
! ATTTATCAGCTAAAATGTAC+CGG - chr3_3:4626023-4626042 Msa0439080:intron 25.0%
!! AAAAGAGTGTATCTAAAATC+TGG - chr3_3:4626481-4626500 Msa0439080:CDS 25.0%
! TATATGGAAAAAAAAGGTTG+TGG + chr3_3:4626574-4626593 None:intergenic 25.0%
!!! ACAACCTTTTTTTTCCATAT+AGG - chr3_3:4626573-4626592 Msa0439080:intron 25.0%
!!! GTTTTAAAGAGGTTTTACAA+TGG + chr3_3:4626864-4626883 None:intergenic 25.0%
! AATATTACACCTAAAAATCC+TGG + chr3_3:4627488-4627507 None:intergenic 25.0%
! TTCTTATTGGACTAACAATA+TGG - chr3_3:4627507-4627526 Msa0439080:intron 25.0%
! TGCCATGATATACATAATAA+TGG + chr3_3:4627622-4627641 None:intergenic 25.0%
!! GATTCTGGAAACATAAAATA+TGG - chr3_3:4627967-4627986 Msa0439080:five_prime_UTR 25.0%
! GAAACATAAAATATGGCAAA+TGG - chr3_3:4627974-4627993 Msa0439080:five_prime_UTR 25.0%
AAGAAGATGAATAGTGAAAG+CGG + chr3_3:4621840-4621859 None:intergenic 30.0%
TTCGATTTCTTTCTTCTAGA+AGG + chr3_3:4622028-4622047 None:intergenic 30.0%
AAAGAAATCGAAGCAATCTT+CGG - chr3_3:4622036-4622055 Msa0439080:CDS 30.0%
! TAGGGTTTATTTCTTCATGT+TGG - chr3_3:4622616-4622635 Msa0439080:intron 30.0%
!!! TGTATAGTGTTTTGATGAAG+CGG - chr3_3:4622885-4622904 Msa0439080:intron 30.0%
! TAGTAATTTGCCACATCATT+CGG - chr3_3:4622937-4622956 Msa0439080:intron 30.0%
! TGATGTGATGAATGTTGTTT+AGG - chr3_3:4623185-4623204 Msa0439080:intron 30.0%
! GATGTGATGAATGTTGTTTA+GGG - chr3_3:4623186-4623205 Msa0439080:intron 30.0%
! ATGTGATGAATGTTGTTTAG+GGG - chr3_3:4623187-4623206 Msa0439080:intron 30.0%
! AACAATATTTTACTGCCCAA+TGG - chr3_3:4623271-4623290 Msa0439080:intron 30.0%
!!! AACTCTTTCGTGTTTTGTTT+TGG - chr3_3:4623331-4623350 Msa0439080:CDS 30.0%
TCAAAATAGAATTCACAAGG+AGG + chr3_3:4623648-4623667 None:intergenic 30.0%
ACTTTCTCAAATGTTGACAA+TGG - chr3_3:4623693-4623712 Msa0439080:intron 30.0%
! TGAAGTCTCACTTTCTATTT+TGG + chr3_3:4623825-4623844 None:intergenic 30.0%
TCAACACTTTCAAATGAATC+TGG - chr3_3:4623842-4623861 Msa0439080:intron 30.0%
CAACACTTTCAAATGAATCT+GGG - chr3_3:4623843-4623862 Msa0439080:intron 30.0%
ACTTTACTGGATTTGTATTC+TGG - chr3_3:4623944-4623963 Msa0439080:CDS 30.0%
CTTTACTGGATTTGTATTCT+GGG - chr3_3:4623945-4623964 Msa0439080:CDS 30.0%
!!! TTGTTTTTGACTTGAAGAGA+TGG - chr3_3:4624112-4624131 Msa0439080:CDS 30.0%
!!! TGTTTTTGACTTGAAGAGAT+GGG - chr3_3:4624113-4624132 Msa0439080:CDS 30.0%
CTTTCCAAAATGTCAAATTC+AGG - chr3_3:4624286-4624305 Msa0439080:intron 30.0%
!! TTTTAAGTCTACTGAAAGAG+TGG - chr3_3:4624333-4624352 Msa0439080:CDS 30.0%
TTTAAGTCTACTGAAAGAGT+GGG - chr3_3:4624334-4624353 Msa0439080:CDS 30.0%
TGTGAGAAGTTTGTACTAAA+TGG - chr3_3:4624365-4624384 Msa0439080:intron 30.0%
! TTATAATCTTTCAGGTGCAA+TGG - chr3_3:4624623-4624642 Msa0439080:CDS 30.0%
TTGAGTACAAGTCAATAATG+AGG + chr3_3:4624901-4624920 None:intergenic 30.0%
!! AAGCTGATTTTATTTGTGGT+GGG - chr3_3:4625003-4625022 Msa0439080:intron 30.0%
!!! TGATTTTTTTCATCCTCCAA+TGG + chr3_3:4625080-4625099 None:intergenic 30.0%
TCAGCAACTAATTGTTTACA+TGG - chr3_3:4625097-4625116 Msa0439080:intron 30.0%
!!! GTTGACATTTTGAAATTTGC+TGG - chr3_3:4625167-4625186 Msa0439080:intron 30.0%
!!! ACATTTTGAAATTTGCTGGT+GGG - chr3_3:4625171-4625190 Msa0439080:intron 30.0%
TTCTTACTTCAAACTCAGTA+GGG + chr3_3:4625491-4625510 None:intergenic 30.0%
TTTCTTACTTCAAACTCAGT+AGG + chr3_3:4625492-4625511 None:intergenic 30.0%
TCTTTGTACTTTCATAATGC+AGG - chr3_3:4625590-4625609 Msa0439080:intron 30.0%
TTTGATTCCATTTCTTTCCT+TGG - chr3_3:4625758-4625777 Msa0439080:intron 30.0%
AAGAAAACCAAGGAAAGAAA+TGG + chr3_3:4625768-4625787 None:intergenic 30.0%
CAAAATGCAGTTCATATATG+CGG + chr3_3:4626049-4626068 None:intergenic 30.0%
! TCATCGGTGTTTAATTTCAA+AGG + chr3_3:4626272-4626291 None:intergenic 30.0%
TGTGCTAGTTAAAGAAAACA+AGG - chr3_3:4626438-4626457 Msa0439080:intron 30.0%
TTAAAGAAAACAAGGTGGAA+TGG - chr3_3:4626446-4626465 Msa0439080:intron 30.0%
TAAAGAAAACAAGGTGGAAT+GGG - chr3_3:4626447-4626466 Msa0439080:intron 30.0%
! AGATACACTCTTTTAACAGA+CGG + chr3_3:4626475-4626494 None:intergenic 30.0%
TACTAATTCTGTCTTGTCTT+AGG - chr3_3:4626515-4626534 Msa0439080:CDS 30.0%
ACTAATTCTGTCTTGTCTTA+GGG - chr3_3:4626516-4626535 Msa0439080:CDS 30.0%
GGAACCTATATGGAAAAAAA+AGG + chr3_3:4626580-4626599 None:intergenic 30.0%
ACAAATGTCATAGCATAATC+TGG + chr3_3:4626601-4626620 None:intergenic 30.0%
TATGCTATGACATTTGTTCA+CGG - chr3_3:4626604-4626623 Msa0439080:intron 30.0%
CATATATACATACTTAGAGG+AGG + chr3_3:4626632-4626651 None:intergenic 30.0%
GCACATATATACATACTTAG+AGG + chr3_3:4626635-4626654 None:intergenic 30.0%
!!! ATCTGACCATGTTTTTTGTT+TGG - chr3_3:4626950-4626969 Msa0439080:intron 30.0%
TCCAAAGTTATTCCATTTCT+AGG - chr3_3:4627043-4627062 Msa0439080:intron 30.0%
TATGAAAATTTGTGTATGCG+AGG + chr3_3:4627254-4627273 None:intergenic 30.0%
TCATATGAAGTTTACAGACA+AGG - chr3_3:4627307-4627326 Msa0439080:intron 30.0%
!!! TTTTTGGTTAAGGAATTGGA+AGG + chr3_3:4627383-4627402 None:intergenic 30.0%
!!! TCAGTTTTTGGTTAAGGAAT+TGG + chr3_3:4627387-4627406 None:intergenic 30.0%
!!! GGTTTATCAGTTTTTGGTTA+AGG + chr3_3:4627393-4627412 None:intergenic 30.0%
TATTTCCATCTTTAATGTGC+AGG - chr3_3:4627647-4627666 Msa0439080:intron 30.0%
TCATCATCAACTACATCTAA+AGG + chr3_3:4627811-4627830 None:intergenic 30.0%
!! TTAGATGTAGTTGATGATGA+TGG - chr3_3:4627811-4627830 Msa0439080:CDS 30.0%
! TGAAAAGACATGGATTAATG+AGG + chr3_3:4627853-4627872 None:intergenic 30.0%
AGATAACAGTTGAAAAGACA+TGG + chr3_3:4627863-4627882 None:intergenic 30.0%
!!! GCGTTTTTGAGGCATTTTTA+AGG + chr3_3:4621906-4621925 None:intergenic 35.0%
CTGATGAAGCACAAAAGAAA+TGG - chr3_3:4622101-4622120 Msa0439080:CDS 35.0%
! TGATGGGATTTTATATCAGC+TGG - chr3_3:4622371-4622390 Msa0439080:intron 35.0%
! GTTTTGTGGTACAATCATTC+GGG + chr3_3:4622800-4622819 None:intergenic 35.0%
! CGTTTTGTGGTACAATCATT+CGG + chr3_3:4622801-4622820 None:intergenic 35.0%
! TAGCCAGTAAAAATTTTGCC+TGG - chr3_3:4622837-4622856 Msa0439080:intron 35.0%
TGTGGCAAATTACTATTCCT+TGG + chr3_3:4622932-4622951 None:intergenic 35.0%
! AGTAATTTGCCACATCATTC+GGG - chr3_3:4622938-4622957 Msa0439080:intron 35.0%
! TGTGATGAATGTTGTTTAGG+GGG - chr3_3:4623188-4623207 Msa0439080:intron 35.0%
TTCAATCTTTACCGTGTCTT+CGG + chr3_3:4623307-4623326 None:intergenic 35.0%
!! TTGGTTTGCTTTGCTGTTTA+TGG - chr3_3:4623350-4623369 Msa0439080:CDS 35.0%
! TTTTGTCAACTAGATTCCCA+TGG + chr3_3:4623425-4623444 None:intergenic 35.0%
GGAATCTAGTTGACAAAAAG+AGG - chr3_3:4623427-4623446 Msa0439080:intron 35.0%
GCTGATAAAAATGCGGTTAA+AGG - chr3_3:4623881-4623900 Msa0439080:intron 35.0%
TTCTTGCATTAAGCTTGTCA+CGG - chr3_3:4624009-4624028 Msa0439080:intron 35.0%
! CTCACCTGAATTTGACATTT+TGG + chr3_3:4624293-4624312 None:intergenic 35.0%
CAAAATGTCAAATTCAGGTG+AGG - chr3_3:4624291-4624310 Msa0439080:CDS 35.0%
AGACTTAAAAAGTCTTCTGC+CGG + chr3_3:4624323-4624342 None:intergenic 35.0%
! ACAGATTCTGATTTGAATGC+TGG - chr3_3:4624398-4624417 Msa0439080:intron 35.0%
! AGACTACTCTCTATTTGCTA+TGG - chr3_3:4624482-4624501 Msa0439080:CDS 35.0%
ACGATTCCAGTTATGATACA+TGG - chr3_3:4624653-4624672 Msa0439080:CDS 35.0%
CGATTCCAGTTATGATACAT+GGG - chr3_3:4624654-4624673 Msa0439080:CDS 35.0%
TACAAGTCAATAATGAGGAG+TGG + chr3_3:4624896-4624915 None:intergenic 35.0%
AACCATTAGAGGTGAAAGAA+GGG + chr3_3:4624925-4624944 None:intergenic 35.0%
AAACCATTAGAGGTGAAAGA+AGG + chr3_3:4624926-4624945 None:intergenic 35.0%
!! GACAGTTGATAAACCATTAG+AGG + chr3_3:4624936-4624955 None:intergenic 35.0%
TACTACTTCATGCTTGTCTA+GGG - chr3_3:4624978-4624997 Msa0439080:intron 35.0%
CACCACAAATAAAATCAGCT+TGG + chr3_3:4625004-4625023 None:intergenic 35.0%
!! CAAGCTGATTTTATTTGTGG+TGG - chr3_3:4625002-4625021 Msa0439080:intron 35.0%
TTCTCCATGAGAACATACTT+AGG + chr3_3:4625143-4625162 None:intergenic 35.0%
!!! GACATTTTGAAATTTGCTGG+TGG - chr3_3:4625170-4625189 Msa0439080:intron 35.0%
ATGAATTATCAAGCTCGGAT+GGG - chr3_3:4625230-4625249 Msa0439080:intron 35.0%
! TTGTGCCCTTTTCTTAGATA+AGG - chr3_3:4625530-4625549 Msa0439080:intron 35.0%
GGGTTCCTTATCTAAGAAAA+GGG + chr3_3:4625538-4625557 None:intergenic 35.0%
TGGGTTCCTTATCTAAGAAA+AGG + chr3_3:4625539-4625558 None:intergenic 35.0%
TGTGAGCAAAAACAACATAC+CGG + chr3_3:4625699-4625718 None:intergenic 35.0%
ATTGCAATGAAAGATGTCAG+TGG - chr3_3:4625951-4625970 Msa0439080:CDS 35.0%
! AACTGCATTTTGTCTTACTC+TGG - chr3_3:4626057-4626076 Msa0439080:intron 35.0%
GCATATTGTTACATGTCACA+TGG - chr3_3:4626115-4626134 Msa0439080:CDS 35.0%
! CCAATTCAAGTTAGTGATGA+AGG + chr3_3:4626161-4626180 None:intergenic 35.0%
CCTTCATCACTAACTTGAAT+TGG - chr3_3:4626158-4626177 Msa0439080:intron 35.0%
! ATATGTTTCTACTCCAGAGA+TGG - chr3_3:4626190-4626209 Msa0439080:intron 35.0%
TCCAGAGATGGTGAATTATT+CGG - chr3_3:4626202-4626221 Msa0439080:intron 35.0%
GCTAGTTAAAGAAAACAAGG+TGG - chr3_3:4626441-4626460 Msa0439080:intron 35.0%
! GATACACTCTTTTAACAGAC+GGG + chr3_3:4626474-4626493 None:intergenic 35.0%
CAAGACAGAATTAGTACCAA+CGG + chr3_3:4626511-4626530 None:intergenic 35.0%
! AGCATAATCTGGAACCTATA+TGG + chr3_3:4626590-4626609 None:intergenic 35.0%
ATGCTATGACATTTGTTCAC+GGG - chr3_3:4626605-4626624 Msa0439080:intron 35.0%
ATGTATCTGCTGAATACAAC+AGG - chr3_3:4626708-4626727 Msa0439080:intron 35.0%
! AAAGAGGTTTTACAATGGGA+GGG + chr3_3:4626859-4626878 None:intergenic 35.0%
! TAAAGAGGTTTTACAATGGG+AGG + chr3_3:4626860-4626879 None:intergenic 35.0%
TGAGAAATGTTATCGACCTT+AGG - chr3_3:4626895-4626914 Msa0439080:intron 35.0%
ATGCTAACATGATCATCCTA+AGG + chr3_3:4626914-4626933 None:intergenic 35.0%
ACAGGTCCAAACAAAAAACA+TGG + chr3_3:4626959-4626978 None:intergenic 35.0%
GCCTAGAAATGGAATAACTT+TGG + chr3_3:4627047-4627066 None:intergenic 35.0%
GTTCAAACTGGTATCTTATC+TGG - chr3_3:4627175-4627194 Msa0439080:intron 35.0%
ATGAAGTTTACAGACAAGGA+TGG - chr3_3:4627311-4627330 Msa0439080:intron 35.0%
ATGTACCTGCACATTAAAGA+TGG + chr3_3:4627655-4627674 None:intergenic 35.0%
CAAACCTAATGTGTATCCAA+GGG + chr3_3:4627716-4627735 None:intergenic 35.0%
ACATTAGGTTTGGCAATTCT+AGG - chr3_3:4627724-4627743 Msa0439080:CDS 35.0%
AGACAACTTGGGTACTTAAA+GGG + chr3_3:4627781-4627800 None:intergenic 35.0%
TAGACAACTTGGGTACTTAA+AGG + chr3_3:4627782-4627801 None:intergenic 35.0%
ATCAACTACATCTAAAGGAC+GGG + chr3_3:4627806-4627825 None:intergenic 35.0%
CATCAACTACATCTAAAGGA+CGG + chr3_3:4627807-4627826 None:intergenic 35.0%
TTCTAGGCCCTGAATATTAT+TGG + chr3_3:4627908-4627927 None:intergenic 35.0%
CTTGCATAATCATCAGTTGT+AGG + chr3_3:4627948-4627967 None:intergenic 35.0%
CTGATGATTATGCAAGATTC+TGG - chr3_3:4627952-4627971 Msa0439080:five_prime_UTR 35.0%
! GATTTACGAACGCGTTTTTG+AGG + chr3_3:4621917-4621936 None:intergenic 40.0%
TCGTTCCTCATTCTTCCAAA+CGG - chr3_3:4621954-4621973 Msa0439080:CDS 40.0%
TTCTTCCGTTTGGAAGAATG+AGG + chr3_3:4621962-4621981 None:intergenic 40.0%
!! TTGTTTGGCTTTCTTCCGTT+TGG + chr3_3:4621972-4621991 None:intergenic 40.0%
GAAGAAAGCCAAACAATCTC+CGG - chr3_3:4621976-4621995 Msa0439080:CDS 40.0%
TTCTTCAACCGGAGATTGTT+TGG + chr3_3:4621987-4622006 None:intergenic 40.0%
GAAACCAGTTCTTCTTCAAC+CGG + chr3_3:4621998-4622017 None:intergenic 40.0%
! TTCTTTTGTGCTTCATCAGC+CGG + chr3_3:4622100-4622119 None:intergenic 40.0%
! GTTTTGTAGTGAATCGAGTG+AGG - chr3_3:4622305-4622324 Msa0439080:intron 40.0%
GAGTGAGGATGAAAGTTTGA+AGG - chr3_3:4622320-4622339 Msa0439080:intron 40.0%
! TGGGATTTTATATCAGCTGG+AGG - chr3_3:4622374-4622393 Msa0439080:intron 40.0%
! GGAGGATAATGCTTTTGTCA+AGG - chr3_3:4622392-4622411 Msa0439080:intron 40.0%
! TTCATTTCGCGAACGTTTTG+TGG + chr3_3:4622814-4622833 None:intergenic 40.0%
! CAGTAAAAATTTTGCCTGGC+CGG - chr3_3:4622841-4622860 Msa0439080:intron 40.0%
GGACTACATTGCTAAGATTG+TGG - chr3_3:4623224-4623243 Msa0439080:intron 40.0%
TTCGGCTCTGTAAAACCATT+GGG + chr3_3:4623289-4623308 None:intergenic 40.0%
TGATTTGAATGTGTGTGTGC+AGG - chr3_3:4623389-4623408 Msa0439080:intron 40.0%
! CTACATGAAGCACTTACATC+AGG + chr3_3:4623528-4623547 None:intergenic 40.0%
TTTGGCAGCTGTATCAATCA+GGG + chr3_3:4623807-4623826 None:intergenic 40.0%
! TTTTGGCAGCTGTATCAATC+AGG + chr3_3:4623808-4623827 None:intergenic 40.0%
TTTATCAGCTGCATGGACAT+TGG + chr3_3:4623870-4623889 None:intergenic 40.0%
CCATGCAGCTGATAAAAATG+CGG - chr3_3:4623874-4623893 Msa0439080:intron 40.0%
AAGAATGTAATAGGCCTGAG+TGG - chr3_3:4623921-4623940 Msa0439080:CDS 40.0%
AAATCCAGTAAAGTCCACTC+AGG + chr3_3:4623938-4623957 None:intergenic 40.0%
CAAAACGTACGTGAGTTTCT+GGG + chr3_3:4624185-4624204 None:intergenic 40.0%
!! CCTGGTTTTTCATCTTCGTT+GGG + chr3_3:4624512-4624531 None:intergenic 40.0%
!! TCCTGGTTTTTCATCTTCGT+TGG + chr3_3:4624513-4624532 None:intergenic 40.0%
!! CCTACTCTGAAATATAGTCC+TGG + chr3_3:4624530-4624549 None:intergenic 40.0%
CCAGGACTATATTTCAGAGT+AGG - chr3_3:4624527-4624546 Msa0439080:CDS 40.0%
! AATCTTTCAGGTGCAATGGA+AGG - chr3_3:4624627-4624646 Msa0439080:CDS 40.0%
! ATCTTTCAGGTGCAATGGAA+GGG - chr3_3:4624628-4624647 Msa0439080:CDS 40.0%
ATATACCTCAAGCCCTCAAT+GGG + chr3_3:4624682-4624701 None:intergenic 40.0%
AATATACCTCAAGCCCTCAA+TGG + chr3_3:4624683-4624702 None:intergenic 40.0%
ACCATTAGAGGTGAAAGAAG+GGG + chr3_3:4624924-4624943 None:intergenic 40.0%
GTACTACTTCATGCTTGTCT+AGG - chr3_3:4624977-4624996 Msa0439080:intron 40.0%
!! GGCCAAGCTGATTTTATTTG+TGG - chr3_3:4624999-4625018 Msa0439080:intron 40.0%
AAACCACTAACACCTTGACA+AGG + chr3_3:4625032-4625051 None:intergenic 40.0%
TTAGTGGTTTCAATCGCTTC+AGG - chr3_3:4625042-4625061 Msa0439080:intron 40.0%
CAGGAACAAAAATGCTCCAT+TGG - chr3_3:4625061-4625080 Msa0439080:intron 40.0%
GAACAAAAATGCTCCATTGG+AGG - chr3_3:4625064-4625083 Msa0439080:intron 40.0%
GAAGCCTAAGTATGTTCTCA+TGG - chr3_3:4625136-4625155 Msa0439080:CDS 40.0%
!! AAATTTGCTGGTGGGTTTCT+GGG - chr3_3:4625179-4625198 Msa0439080:intron 40.0%
GATAATTCATGGCCACTAGA+CGG + chr3_3:4625220-4625239 None:intergenic 40.0%
TGGCCATGAATTATCAAGCT+CGG - chr3_3:4625225-4625244 Msa0439080:intron 40.0%
! CATCCGAGCTTGATAATTCA+TGG + chr3_3:4625231-4625250 None:intergenic 40.0%
CATGAATTATCAAGCTCGGA+TGG - chr3_3:4625229-4625248 Msa0439080:intron 40.0%
CATATGGCCTTCCTCAATTT+CGG - chr3_3:4625270-4625289 Msa0439080:CDS 40.0%
AAAACACGCATCCGAAATTG+AGG + chr3_3:4625284-4625303 None:intergenic 40.0%
! TTCGGATGCGTGTTTTTCTT+TGG - chr3_3:4625288-4625307 Msa0439080:CDS 40.0%
! TCGGATGCGTGTTTTTCTTT+GGG - chr3_3:4625289-4625308 Msa0439080:CDS 40.0%
! GAGCTCTAACTACTGAAGTA+AGG - chr3_3:4625312-4625331 Msa0439080:CDS 40.0%
!! TGAGTTGGTAACGGATATGA+GGG + chr3_3:4625444-4625463 None:intergenic 40.0%
!! ATGAGTTGGTAACGGATATG+AGG + chr3_3:4625445-4625464 None:intergenic 40.0%
ATATCCGTTACCAACTCATG+AGG - chr3_3:4625446-4625465 Msa0439080:CDS 40.0%
!! TCAACCTCATGAGTTGGTAA+CGG + chr3_3:4625453-4625472 None:intergenic 40.0%
! CAGCTGACACTTTTCATTAG+TGG + chr3_3:4625634-4625653 None:intergenic 40.0%
!! CACTAATGAAAAGTGTCAGC+TGG - chr3_3:4625632-4625651 Msa0439080:CDS 40.0%
AGCAAAAACAACATACCGGT+GGG + chr3_3:4625695-4625714 None:intergenic 40.0%
AGCGATGATGAAAAGAGCTA+CGG - chr3_3:4625814-4625833 Msa0439080:CDS 40.0%
TGATCATACAGCATACCACT+TGG + chr3_3:4626245-4626264 None:intergenic 40.0%
GCAAACTCTCTCATAGTCAT+CGG + chr3_3:4626288-4626307 None:intergenic 40.0%
AGATATGGAACCTTCTCCTT+TGG + chr3_3:4626317-4626336 None:intergenic 40.0%
! TTGTGCTTGCTTGCCTTTTT+AGG - chr3_3:4626390-4626409 Msa0439080:intron 40.0%
! TGTGCTTGCTTGCCTTTTTA+GGG - chr3_3:4626391-4626410 Msa0439080:intron 40.0%
!! TTTTTAGGGGGCAAACTTCA+GGG - chr3_3:4626405-4626424 Msa0439080:intron 40.0%
! TCTAAAATCTGGAAAGCCGT+TGG - chr3_3:4626492-4626511 Msa0439080:CDS 40.0%
TTGTGTCCACTGTTGTAACA+AGG - chr3_3:4626759-4626778 Msa0439080:intron 40.0%
TGTGTCCACTGTTGTAACAA+GGG - chr3_3:4626760-4626779 Msa0439080:intron 40.0%
CGAATAACAACCTGGTTATG+AGG + chr3_3:4626791-4626810 None:intergenic 40.0%
CACAACTTCGAATAACAACC+TGG + chr3_3:4626799-4626818 None:intergenic 40.0%
GAATGCTAAGAACTCTGTCT+TGG + chr3_3:4627085-4627104 None:intergenic 40.0%
TTAGCATTCGAGAGAATGCA+AGG - chr3_3:4627096-4627115 Msa0439080:intron 40.0%
ACACATACCTCTGTTTGACA+GGG + chr3_3:4627157-4627176 None:intergenic 40.0%
AACACATACCTCTGTTTGAC+AGG + chr3_3:4627158-4627177 None:intergenic 40.0%
! ACAGAGGTATGTGTTCAAAC+TGG - chr3_3:4627163-4627182 Msa0439080:intron 40.0%
ACTGCTCAATAACTCTCCTA+AGG - chr3_3:4627455-4627474 Msa0439080:CDS 40.0%
CTGCTCAATAACTCTCCTAA+GGG - chr3_3:4627456-4627475 Msa0439080:CDS 40.0%
TAATGTGTATCCAAGGGCAA+GGG + chr3_3:4627710-4627729 None:intergenic 40.0%
CCAAACCTAATGTGTATCCA+AGG + chr3_3:4627717-4627736 None:intergenic 40.0%
CCTTGGATACACATTAGGTT+TGG - chr3_3:4627714-4627733 Msa0439080:CDS 40.0%
GACAACTTGGGTACTTAAAG+GGG + chr3_3:4627780-4627799 None:intergenic 40.0%
GAGCAGGTTCAACAAAAGTG+CGG - chr3_3:4621732-4621751 Msa0439080:three_prime_UTR 45.0%
! AGCAGGTTCAACAAAAGTGC+GGG - chr3_3:4621733-4621752 Msa0439080:three_prime_UTR 45.0%
! AGGAACGACTTCGTCTTGTT+TGG + chr3_3:4621942-4621961 None:intergenic 45.0%
ATCTCCGGTTGAAGAAGAAC+TGG - chr3_3:4621991-4622010 Msa0439080:CDS 45.0%
CTTCGTCGGAGAACTTATTC+CGG - chr3_3:4622078-4622097 Msa0439080:CDS 45.0%
CACAAAAGAAATGGCCTCAC+CGG - chr3_3:4622110-4622129 Msa0439080:intron 45.0%
CTCACTCGTTCTTAGTGTAC+CGG + chr3_3:4622132-4622151 None:intergenic 45.0%
GTTTCACTATCGTGAAGCGA+AGG - chr3_3:4622347-4622366 Msa0439080:intron 45.0%
TATCGTGAAGCGAAGGTTGA+TGG - chr3_3:4622354-4622373 Msa0439080:intron 45.0%
! ATCGTGAAGCGAAGGTTGAT+GGG - chr3_3:4622355-4622374 Msa0439080:intron 45.0%
! CGGCCAGGCAAAATTTTTAC+TGG + chr3_3:4622843-4622862 None:intergenic 45.0%
AGCGAATGTGTATTCGCGAT+TGG + chr3_3:4622966-4622985 None:intergenic 45.0%
! GATGAATGTTGTTTAGGGGG+AGG - chr3_3:4623191-4623210 Msa0439080:intron 45.0%
! AATGTTGTTTAGGGGGAGGA+AGG - chr3_3:4623195-4623214 Msa0439080:intron 45.0%
CTTCGGCTCTGTAAAACCAT+TGG + chr3_3:4623290-4623309 None:intergenic 45.0%
! GTTTTACAGAGCCGAAGACA+CGG - chr3_3:4623293-4623312 Msa0439080:CDS 45.0%
TGTGTGTGTGCAGGTGATTA+AGG - chr3_3:4623398-4623417 Msa0439080:intron 45.0%
TGCAGGTGATTAAGGACCAT+GGG - chr3_3:4623406-4623425 Msa0439080:intron 45.0%
! CCGCATTTTTATCAGCTGCA+TGG + chr3_3:4623877-4623896 None:intergenic 45.0%
CTGGATTTGTATTCTGGGTG+TGG - chr3_3:4623950-4623969 Msa0439080:CDS 45.0%
!! ATGTCCACTGGTCTTTGCTT+TGG - chr3_3:4623977-4623996 Msa0439080:intron 45.0%
CCAAAACGTACGTGAGTTTC+TGG + chr3_3:4624186-4624205 None:intergenic 45.0%
! CCAGAAACTCACGTACGTTT+TGG - chr3_3:4624183-4624202 Msa0439080:intron 45.0%
AATTCAGGTGAGGAATGAGC+CGG - chr3_3:4624301-4624320 Msa0439080:CDS 45.0%
TTGAATGCTGGTGAAGAAGC+TGG - chr3_3:4624410-4624429 Msa0439080:intron 45.0%
AGATGATTCACCTGACTCTG+AGG - chr3_3:4624445-4624464 Msa0439080:intron 45.0%
!! ACCTGACTCTGAGGTATTTG+AGG - chr3_3:4624454-4624473 Msa0439080:intron 45.0%
ACCTCAAATACCTCAGAGTC+AGG + chr3_3:4624458-4624477 None:intergenic 45.0%
CCCAACGAAGATGAAAAACC+AGG - chr3_3:4624509-4624528 Msa0439080:CDS 45.0%
ACCCCTTCTTTCACCTCTAA+TGG - chr3_3:4624920-4624939 Msa0439080:CDS 45.0%
!! GAAATTTGCTGGTGGGTTTC+TGG - chr3_3:4625178-4625197 Msa0439080:intron 45.0%
!! AATTTGCTGGTGGGTTTCTG+GGG - chr3_3:4625180-4625199 Msa0439080:intron 45.0%
! CGGATGCGTGTTTTTCTTTG+GGG - chr3_3:4625290-4625309 Msa0439080:CDS 45.0%
CTGGATTCAACCTCATGAGT+TGG + chr3_3:4625459-4625478 None:intergenic 45.0%
! TGGCCAAGGCATTATACCTT+GGG - chr3_3:4625652-4625671 Msa0439080:intron 45.0%
GAGCAAAAACAACATACCGG+TGG + chr3_3:4625696-4625715 None:intergenic 45.0%
GCGATGATGAAAAGAGCTAC+GGG - chr3_3:4625815-4625834 Msa0439080:CDS 45.0%
ATGCAGTTCATATATGCGGC+CGG + chr3_3:4626045-4626064 None:intergenic 45.0%
GCCGAATAATTCACCATCTC+TGG + chr3_3:4626206-4626225 None:intergenic 45.0%
GAGAGTTTGCCACATTCCAA+AGG - chr3_3:4626298-4626317 Msa0439080:CDS 45.0%
TTGCCACATTCCAAAGGAGA+AGG - chr3_3:4626304-4626323 Msa0439080:CDS 45.0%
!! GAACCTTCTCCTTTGGAATG+TGG + chr3_3:4626310-4626329 None:intergenic 45.0%
! GTGCTTGCTTGCCTTTTTAG+GGG - chr3_3:4626392-4626411 Msa0439080:intron 45.0%
!! TGCTTGCTTGCCTTTTTAGG+GGG - chr3_3:4626393-4626412 Msa0439080:intron 45.0%
CTGAAGTTTGCCCCCTAAAA+AGG + chr3_3:4626406-4626425 None:intergenic 45.0%
!! CTTTTTAGGGGGCAAACTTC+AGG - chr3_3:4626404-4626423 Msa0439080:intron 45.0%
GCTGAATACAACAGGCCATT+TGG - chr3_3:4626716-4626735 Msa0439080:intron 45.0%
AACAACCTGGTTATGAGGCT+CGG + chr3_3:4626786-4626805 None:intergenic 45.0%
GTTTGGACCTGTTGTGTAAG+TGG - chr3_3:4626967-4626986 Msa0439080:intron 45.0%
! AGTACTGCCACTTACACAAC+AGG + chr3_3:4626977-4626996 None:intergenic 45.0%
GATGGAGAAGAGCCTAGAAA+TGG + chr3_3:4627058-4627077 None:intergenic 45.0%
CTAAGAACTCTGTCTTGGTC+TGG + chr3_3:4627080-4627099 None:intergenic 45.0%
CCACAAAGCTTATAGCAGTC+TGG + chr3_3:4627134-4627153 None:intergenic 45.0%
CCAGACTGCTATAAGCTTTG+TGG - chr3_3:4627131-4627150 Msa0439080:intron 45.0%
AAATCCTGGACTGATCCCTT+AGG + chr3_3:4627474-4627493 None:intergenic 45.0%
! GGGATCAGTCCAGGATTTTT+AGG - chr3_3:4627476-4627495 Msa0439080:intron 45.0%
ATGTGCAGGTACATGCAAGT+TGG - chr3_3:4627661-4627680 Msa0439080:CDS 45.0%
CTAATGTGTATCCAAGGGCA+AGG + chr3_3:4627711-4627730 None:intergenic 45.0%
CTTGCCCTTGGATACACATT+AGG - chr3_3:4627709-4627728 Msa0439080:CDS 45.0%
!! ATTCTAGGACTCTCCGATGA+CGG - chr3_3:4627739-4627758 Msa0439080:CDS 45.0%
!! TTAAAGGGGAGCGTTGTCAA+AGG + chr3_3:4627766-4627785 None:intergenic 45.0%
! TCGTTCTTAGTGTACCGGTG+AGG + chr3_3:4622127-4622146 None:intergenic 50.0%
! TTTTGCCTGGCCGGAAATCA+TGG - chr3_3:4622850-4622869 Msa0439080:intron 50.0%
TTTGCCTGGCCGGAAATCAT+GGG - chr3_3:4622851-4622870 Msa0439080:intron 50.0%
! CGATTGGTTCCCGAATGATG+TGG + chr3_3:4622950-4622969 None:intergenic 50.0%
TTAGGGGGAGGAAGGAAAAG+AGG - chr3_3:4623203-4623222 Msa0439080:intron 50.0%
GTGCAGGTGATTAAGGACCA+TGG - chr3_3:4623405-4623424 Msa0439080:intron 50.0%
! TAGGCCTGAGTGGACTTTAC+TGG - chr3_3:4623931-4623950 Msa0439080:CDS 50.0%
TGCTCCAAAGCAAAGACCAG+TGG + chr3_3:4623984-4624003 None:intergenic 50.0%
GGGCTCCCATGTATCATAAC+TGG + chr3_3:4624662-4624681 None:intergenic 50.0%
TGATACATGGGAGCCCATTG+AGG - chr3_3:4624666-4624685 Msa0439080:CDS 50.0%
GATACATGGGAGCCCATTGA+GGG - chr3_3:4624667-4624686 Msa0439080:CDS 50.0%
GTGGTGAGACTTACAGGAAG+AGG + chr3_3:4624877-4624896 None:intergenic 50.0%
TGAGGAGTGGTGAGACTTAC+AGG + chr3_3:4624883-4624902 None:intergenic 50.0%
CCACTAACACCTTGACAAGG+TGG + chr3_3:4625029-4625048 None:intergenic 50.0%
! CCACCTTGTCAAGGTGTTAG+TGG - chr3_3:4625026-4625045 Msa0439080:intron 50.0%
!! TTTCTGGGGCGTTATGCTGT+AGG - chr3_3:4625194-4625213 Msa0439080:intron 50.0%
TTATGCTGTAGGCCGTCTAG+TGG - chr3_3:4625205-4625224 Msa0439080:intron 50.0%
TCAAGCTCGGATGGGAATGA+TGG - chr3_3:4625238-4625257 Msa0439080:intron 50.0%
ATGATGGCTGCAGGGTCATA+TGG - chr3_3:4625254-4625273 Msa0439080:CDS 50.0%
CACGCATCCGAAATTGAGGA+AGG + chr3_3:4625280-4625299 None:intergenic 50.0%
CTCAGTAGGGATGACTGATC+TGG + chr3_3:4625478-4625497 None:intergenic 50.0%
!! TGAAAAGTGTCAGCTGGCCA+AGG - chr3_3:4625638-4625657 Msa0439080:CDS 50.0%
! CTGGCCAAGGCATTATACCT+TGG - chr3_3:4625651-4625670 Msa0439080:intron 50.0%
! GGCCAAGGCATTATACCTTG+GGG - chr3_3:4625653-4625672 Msa0439080:intron 50.0%
GTCCCCAAGGTATAATGCCT+TGG + chr3_3:4625658-4625677 None:intergenic 50.0%
GATCATCAATTGCGTCCCCA+AGG + chr3_3:4625671-4625690 None:intergenic 50.0%
! CGCAATTGATGATCTCCCAC+CGG - chr3_3:4625677-4625696 Msa0439080:intron 50.0%
GACTCTCAAAGTGCACCAAG+TGG - chr3_3:4626227-4626246 Msa0439080:intron 50.0%
CTTTAACTAGCACACCCTCG+AGG + chr3_3:4626432-4626451 None:intergenic 50.0%
! ACAGGCCATTTGGTCGACTT+TGG - chr3_3:4626726-4626745 Msa0439080:intron 50.0%
! GCCATTTGGTCGACTTTGGT+GGG - chr3_3:4626730-4626749 Msa0439080:intron 50.0%
TCCCACCAAAGTCGACCAAA+TGG + chr3_3:4626734-4626753 None:intergenic 50.0%
GAGGGTAGCATAAGTGGCAT+TGG + chr3_3:4626841-4626860 None:intergenic 50.0%
CAATGGGAGGGTAGCATAAG+TGG + chr3_3:4626847-4626866 None:intergenic 50.0%
GAACTCTGTCTTGGTCTGGA+TGG + chr3_3:4627076-4627095 None:intergenic 50.0%
CGAGAGAATGCAAGGCTACA+AGG - chr3_3:4627104-4627123 Msa0439080:intron 50.0%
TTTGTGGCCCTGTCAAACAG+AGG - chr3_3:4627147-4627166 Msa0439080:intron 50.0%
CGTTGTCAAAGGACCGTCAT+CGG + chr3_3:4627755-4627774 None:intergenic 50.0%
!! AAGGACGGGCTAGACAACTT+GGG + chr3_3:4627792-4627811 None:intergenic 50.0%
!! AAAGGACGGGCTAGACAACT+TGG + chr3_3:4627793-4627812 None:intergenic 50.0%
TCCGACGATGCATGCTTCGT+CGG - chr3_3:4622064-4622083 Msa0439080:CDS 55.0%
TCCGACGAAGCATGCATCGT+CGG + chr3_3:4622068-4622087 None:intergenic 55.0%
TTGCCTGGCCGGAAATCATG+GGG - chr3_3:4622852-4622871 Msa0439080:intron 55.0%
ACCCACCACCCCATGATTTC+CGG + chr3_3:4622863-4622882 None:intergenic 55.0%
TGACTTGAAGAGATGGGCCG+TGG - chr3_3:4624119-4624138 Msa0439080:CDS 55.0%
GGATGGGAATGATGGCTGCA+GGG - chr3_3:4625246-4625265 Msa0439080:intron 55.0%
GCAAACTTCAGGGACCTCGA+GGG - chr3_3:4626415-4626434 Msa0439080:intron 55.0%
! GGCCATTTGGTCGACTTTGG+TGG - chr3_3:4626729-4626748 Msa0439080:intron 55.0%
CTCGGCCCTTGTTACAACAG+TGG + chr3_3:4626768-4626787 None:intergenic 55.0%
CTCTCCTAAGGGATCAGTCC+AGG - chr3_3:4627467-4627486 Msa0439080:intron 55.0%
TATCCAAGGGCAAGGGCAAC+AGG + chr3_3:4627703-4627722 None:intergenic 55.0%
GCCGGAAATCATGGGGTGGT+GGG - chr3_3:4622859-4622878 Msa0439080:intron 60.0%
GGGTGTGGAGCTATGTCCAC+TGG - chr3_3:4623965-4623984 Msa0439080:CDS 60.0%
!! TGTGGTGGGCCACCTTGTCA+AGG - chr3_3:4625017-4625036 Msa0439080:intron 60.0%
CGGATGGGAATGATGGCTGC+AGG - chr3_3:4625245-4625264 Msa0439080:intron 60.0%
GGCAAACTTCAGGGACCTCG+AGG - chr3_3:4626414-4626433 Msa0439080:intron 60.0%
AAGGGCCGAGCCTCATAACC+AGG - chr3_3:4626778-4626797 Msa0439080:intron 60.0%
GTTCCTGTTGCCCTTGCCCT+TGG - chr3_3:4627697-4627716 Msa0439080:CDS 60.0%
CCACCCCATGATTTCCGGCC+AGG + chr3_3:4622858-4622877 None:intergenic 65.0%
CCTGGCCGGAAATCATGGGG+TGG - chr3_3:4622855-4622874 Msa0439080:intron 65.0%
GGCCGGAAATCATGGGGTGG+TGG - chr3_3:4622858-4622877 Msa0439080:intron 65.0%
GGGAGCCCATTGAGGGCTTG+AGG - chr3_3:4624674-4624693 Msa0439080:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 4621724 4628070 4621724 ID=Msa0439080;Name=Msa0439080
chr3_3 mRNA 4621724 4628070 4621724 ID=Msa0439080-mRNA-1;Parent=Msa0439080;Name=Msa0439080-mRNA-1;_AED=0.15;_eAED=0.15;_QI=187|1|1|1|1|1|20|227|827
chr3_3 exon 4621724 4622125 4621724 ID=Msa0439080-mRNA-1:exon:1023;Parent=Msa0439080-mRNA-1
chr3_3 exon 4622626 4622729 4622626 ID=Msa0439080-mRNA-1:exon:1022;Parent=Msa0439080-mRNA-1
chr3_3 exon 4622995 4623064 4622995 ID=Msa0439080-mRNA-1:exon:1021;Parent=Msa0439080-mRNA-1
chr3_3 exon 4623156 4623199 4623156 ID=Msa0439080-mRNA-1:exon:1020;Parent=Msa0439080-mRNA-1
chr3_3 exon 4623281 4623382 4623281 ID=Msa0439080-mRNA-1:exon:1019;Parent=Msa0439080-mRNA-1
chr3_3 exon 4623469 4623587 4623469 ID=Msa0439080-mRNA-1:exon:1018;Parent=Msa0439080-mRNA-1
chr3_3 exon 4623908 4623995 4623908 ID=Msa0439080-mRNA-1:exon:1017;Parent=Msa0439080-mRNA-1
chr3_3 exon 4624096 4624182 4624096 ID=Msa0439080-mRNA-1:exon:1016;Parent=Msa0439080-mRNA-1
chr3_3 exon 4624291 4624359 4624291 ID=Msa0439080-mRNA-1:exon:1015;Parent=Msa0439080-mRNA-1
chr3_3 exon 4624466 4624795 4624466 ID=Msa0439080-mRNA-1:exon:1014;Parent=Msa0439080-mRNA-1
chr3_3 exon 4624912 4624978 4624912 ID=Msa0439080-mRNA-1:exon:1013;Parent=Msa0439080-mRNA-1
chr3_3 exon 4625099 4625157 4625099 ID=Msa0439080-mRNA-1:exon:1012;Parent=Msa0439080-mRNA-1
chr3_3 exon 4625250 4625486 4625250 ID=Msa0439080-mRNA-1:exon:1011;Parent=Msa0439080-mRNA-1
chr3_3 exon 4625600 4625665 4625600 ID=Msa0439080-mRNA-1:exon:1010;Parent=Msa0439080-mRNA-1
chr3_3 exon 4625764 4625975 4625764 ID=Msa0439080-mRNA-1:exon:1009;Parent=Msa0439080-mRNA-1
chr3_3 exon 4626080 4626170 4626080 ID=Msa0439080-mRNA-1:exon:1008;Parent=Msa0439080-mRNA-1
chr3_3 exon 4626264 4626383 4626264 ID=Msa0439080-mRNA-1:exon:1007;Parent=Msa0439080-mRNA-1
chr3_3 exon 4626480 4626587 4626480 ID=Msa0439080-mRNA-1:exon:1006;Parent=Msa0439080-mRNA-1
chr3_3 exon 4627381 4627480 4627381 ID=Msa0439080-mRNA-1:exon:1005;Parent=Msa0439080-mRNA-1
chr3_3 exon 4627648 4628070 4627648 ID=Msa0439080-mRNA-1:exon:1004;Parent=Msa0439080-mRNA-1
chr3_3 five_prime_UTR 4627884 4628070 4627884 ID=Msa0439080-mRNA-1:five_prime_utr;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4627648 4627883 4627648 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4627381 4627480 4627381 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4626480 4626587 4626480 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4626264 4626383 4626264 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4626080 4626170 4626080 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4625764 4625975 4625764 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4625600 4625665 4625600 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4625250 4625486 4625250 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4625099 4625157 4625099 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4624912 4624978 4624912 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4624466 4624795 4624466 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4624291 4624359 4624291 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4624096 4624182 4624096 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4623908 4623995 4623908 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4623469 4623587 4623469 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4623281 4623382 4623281 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4623156 4623199 4623156 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4622995 4623064 4622995 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4622626 4622729 4622626 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 CDS 4621951 4622125 4621951 ID=Msa0439080-mRNA-1:cds;Parent=Msa0439080-mRNA-1
chr3_3 three_prime_UTR 4621724 4621950 4621724 ID=Msa0439080-mRNA-1:three_prime_utr;Parent=Msa0439080-mRNA-1
Gene Sequence

>Msa0439080

ATGCCTCAAAAACGCGTTCGTAAATCTTCCAAACAAGACGAAGTCGTTCCTCATTCTTCCAAACGGAAGAAAGCCAAACAATCTCCGGTTGAAGAAGAACTGGTTTCGCTTCTTCCTTCTAGAAGAAAGAAATCGAAGCAATCTTCGGTTAATTCCGACGATGCATGCTTCGTCGGAGAACTTATTCCGGCTGATGAAGCACAAAAGAAATGGCCTCACCGGTACACTAAGAACGATGAATCGAGTGAGGATGAAAGTTTGAAGGCGAAGTTTCACTATCGTGAAGCGAAGGTTGATGGGATTTTATATCAGCTGGAGGATAATGCTTTTGTCAAGGGGGAGGAAGGAAAAGAGGACTACATTGCTAAGATTGTGGAGATGTTTGAAACTCCTGATGAAGAACAATATTTTACTGCCCAATGGTTTTACAGAGCCGAAGACACGGTGATTAAGGACCATGGGAATCTAGTTGACAAAAAGAGGATTTTCATATCTGATGTAAAAGATGAAAATCCTTTAGATTGTTTAGTTAGGAAAGTTAACATTGTACAAATTTCTCCTGATGCTGCAAAAAAGAAGAAAATTCCTCCTTGTGAATTCTATTTTGACATGAAGTACACTGTGCCCTATATAACTTTCTCAAATGTTGACAATGCTGCCAAAATAGAAAGTGAGACTTCAACACTTTCAAATGAATCTGGGTCCAATGTCCATGCAGCTGATAAAAATGCGGTTAAAGGAAAATCAAGTCAAATTAAAGAATGTAATAGGCCTGAGTGGACTTTACTGGATTTGTATTCTGGGTGTGGAGCTATGTCCACTGGTCTTTGCTTTGGAGCATCTATTTCTTGCATTAAGCTTGTCACGAGATGGGCCGTGGATATAAATGAATATGCATGTGAGAGTCTCAAGCTGAATCACCCAGAAACTCACGTGAGGAATGAGCCGGCAGAAGACTTTTTAAGTCTACTGAAAGAGTGGGCTAAACTCTGTGAGAAGTTTGTACTAAATGGAGCAGAAAGTACAGATTCTGATTTGAATGCTGGTGAAGAAGCTGGTGATGAAGCTACAGATGATTCACCTGACTCTGAGGTATTTGAGGTTGAAAGACTACTCTCTATTTGCTATGGCGATCCCAACGAAGATGAAAAACCAGGACTATATTTCAGAGTGCAATGGAAGGGTTACGATTCCAGTTATGATACATGGGAGCCCATTGAGGGCTTGAGCGAGTGTAAAGATGCTATGAAAGATTTTGTTATAAATGGATATAAGGACAAGATATTGCCTCTTCCTGGCCAAGCTGATTTTATTTGTGGTGGGCCACCTTGTCAAGGTGTTAGTGGTTTCAATCGCTTCAGGAACAAAAATGCTCCATTGGAGGATGAAAAAAATCAGCAACTAATTGTTTACATGGACATCATCAATTTCTTGAAGCCTAAGTATGTTCTCATGGAGAACGTTGTTGACATTTTGAAATTTGCTGGTGGGTTTCTGGGGCGTTATGCTGTAGGCCGTCTAGTGGCCATGAATTATCAAGCTCGGATGGGAATGATGGCTGCAGGGTCATATGGCCTTCCTCAATTTCGGATGCGTGTTTTTCTTTGGGGAGCTCTAACTACTGAAAAATTACCCTCATATCCGTTACCAACTCATGAGGTTGAATCCAGATCAGTCATCCCTACTGAGTTTGAAGCAATAACAGTTGCATATTCCACTAATGAAAAGTGTCAGCTGGCCAAGGCATTATACCTTGGGGACGCAATTGATGATCTCCCACCGGTTGAAAATGATGATAGCGATGATGAAAAGAGCTACGGGACTACTCCTCGTACTGATTTTCAAAAATATATCAGATTAAAGAGAAGTGAGATGGTGAATTATTCGGCTGACTCTCAAAGTGCACCAAGTGGTATGCTGTATGATCATAGACCTTTGAAATTAAACACCGATGACTATGAGAGAGTTTGCCACATTCCAAAGGAGAAGGGGGCAAACTTCAGGGACCTCGAGGGTGTGCTAGTTAAAGAAAACAAGGTGGAATGGGACCCGTCTGTTAAAAGAGTGTATCTAAAATCTGGAAAGCCGTTGGTTCCAGATTATGCTATGACATTTGTTCACGGGACCTCCTCTAAGCCATTTGGTCGACTTTGGTGGGATGAAATTGTGTCCACTGTTGTAACAAGGGCCGAGCCTCATAACCAGGCTCTTCTCCATCCAGACCAAGACAGAGTTCTTAGCATTCGAGAGAATGCAAGGCTACAAGGATTTCCAGACTGCTATAAGCTTTGTGGCCCTGTCAAACAGAGGTACATGCAAGTTGGAAACGCAGTTGCTGTTCCTGTTGCCCTTGCCCTTGGATACACATTAGGTTTGGCAATTCTAGGACTCTCCGATGACGGTCCTTTGACAACGCTCCCCTTTAAGTACCCAAGTTGTCTAGCCCGTCCTTTAGATGTAGTTGATGATGATGGTTCAAGTTGA
Protein sequence

>Msa0439080

MPQKRVRKSSKQDEVVPHSSKRKKAKQSPVEEELVSLLPSRRKKSKQSSVNSDDACFVGELIPADEAQKKWPHRYTKNDESSEDESLKAKFHYREAKVDGILYQLEDNAFVKGEEGKEDYIAKIVEMFETPDEEQYFTAQWFYRAEDTVIKDHGNLVDKKRIFISDVKDENPLDCLVRKVNIVQISPDAAKKKKIPPCEFYFDMKYTVPYITFSNVDNAAKIESETSTLSNESGSNVHAADKNAVKGKSSQIKECNRPEWTLLDLYSGCGAMSTGLCFGASISCIKLVTRWAVDINEYACESLKLNHPETHVRNEPAEDFLSLLKEWAKLCEKFVLNGAESTDSDLNAGEEAGDEATDDSPDSEVFEVERLLSICYGDPNEDEKPGLYFRVQWKGYDSSYDTWEPIEGLSECKDAMKDFVINGYKDKILPLPGQADFICGGPPCQGVSGFNRFRNKNAPLEDEKNQQLIVYMDIINFLKPKYVLMENVVDILKFAGGFLGRYAVGRLVAMNYQARMGMMAAGSYGLPQFRMRVFLWGALTTEKLPSYPLPTHEVESRSVIPTEFEAITVAYSTNEKCQLAKALYLGDAIDDLPPVENDDSDDEKSYGTTPRTDFQKYIRLKRSEMVNYSADSQSAPSGMLYDHRPLKLNTDDYERVCHIPKEKGANFRDLEGVLVKENKVEWDPSVKRVYLKSGKPLVPDYAMTFVHGTSSKPFGRLWWDEIVSTVVTRAEPHNQALLHPDQDRVLSIRENARLQGFPDCYKLCGPVKQRYMQVGNAVAVPVALALGYTLGLAILGLSDDGPLTTLPFKYPSCLARPLDVVDDDGSS*