Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1134790 | XP_013447447.1 | 94.103 | 831 | 41 | 2 | 1 | 827 | 1 | 827 | 0.0 | 1590 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1134790 | sp|Q9AXT8|CMT1_MAIZE | 55.284 | 776 | 311 | 12 | 57 | 816 | 137 | 892 | 0.0 | 864 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1134790 | G7ZY08 | 94.103 | 831 | 41 | 2 | 1 | 827 | 1 | 827 | 0.0 | 1590 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0606100 | Msa1134790 | 0.810988 | 8.764196e-51 | -8.615850e-47 |
Msa0647050 | Msa1134790 | 0.812897 | 3.364754e-51 | -8.615850e-47 |
Msa0668900 | Msa1134790 | 0.805151 | 1.533128e-49 | -8.615850e-47 |
Msa0800660 | Msa1134790 | 0.805853 | 1.092282e-49 | -8.615850e-47 |
Msa0415140 | Msa1134790 | 0.801012 | 1.100509e-48 | -8.615850e-47 |
Msa0439080 | Msa1134790 | 0.999788 | 0.000000e+00 | -8.615850e-47 |
Msa1008680 | Msa1134790 | 0.823956 | 1.047678e-53 | -8.615850e-47 |
Msa1033920 | Msa1134790 | 0.800659 | 1.298947e-48 | -8.615850e-47 |
Msa1047380 | Msa1134790 | 0.959475 | 1.752162e-117 | -8.615850e-47 |
Msa1082380 | Msa1134790 | 0.805198 | 1.498733e-49 | -8.615850e-47 |
Msa1091410 | Msa1134790 | 0.888019 | 8.553187e-73 | -8.615850e-47 |
Msa1116660 | Msa1134790 | 0.811685 | 6.186810e-51 | -8.615850e-47 |
Msa1116740 | Msa1134790 | 0.804603 | 1.995822e-49 | -8.615850e-47 |
Msa1127280 | Msa1134790 | 0.810925 | 9.046665e-51 | -8.615850e-47 |
Msa1134790 | Msa1139050 | 0.814682 | 1.360455e-51 | -8.615850e-47 |
Msa1134790 | Msa1162880 | 0.827644 | 1.396104e-54 | -8.615850e-47 |
Msa1134790 | Msa1165480 | 0.818773 | 1.645253e-52 | -8.615850e-47 |
Msa1134790 | Msa1342600 | 0.931029 | 6.902831e-94 | -8.615850e-47 |
Msa1134790 | Msa1447170 | 0.816843 | 4.486877e-52 | -8.615850e-47 |
Msa0548000 | Msa1134790 | 0.809230 | 2.097342e-50 | -8.615850e-47 |
Msa0561560 | Msa1134790 | 0.808842 | 2.539033e-50 | -8.615850e-47 |
Msa0563740 | Msa1134790 | 0.822801 | 1.949799e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1134790 | MtrunA17_Chr7g0215341 | 94.103 | 831 | 41 | 2 | 1 | 827 | 1 | 827 | 0.0 | 1590 |
Msa1134790 | MtrunA17_Chr6g0484831 | 90.060 | 835 | 75 | 3 | 1 | 827 | 1 | 835 | 0.0 | 1537 |
Msa1134790 | MtrunA17_Chr5g0406641 | 91.018 | 835 | 66 | 4 | 1 | 826 | 1 | 835 | 0.0 | 1517 |
Msa1134790 | MtrunA17_Chr4g0007641 | 79.265 | 844 | 157 | 7 | 1 | 827 | 1 | 843 | 0.0 | 1357 |
Msa1134790 | MtrunA17_Chr6g0464681 | 69.329 | 864 | 190 | 9 | 1 | 827 | 1 | 826 | 0.0 | 1177 |
Msa1134790 | MtrunA17_Chr6g0486931 | 55.115 | 782 | 314 | 11 | 57 | 811 | 146 | 917 | 0.0 | 871 |
Msa1134790 | MtrunA17_Chr8g0369361 | 51.100 | 773 | 352 | 10 | 57 | 810 | 9 | 774 | 0.0 | 786 |
Msa1134790 | MtrunA17_Chr5g0427891 | 59.475 | 343 | 138 | 1 | 469 | 811 | 1 | 342 | 2.40e-140 | 419 |
Msa1134790 | MtrunA17_Chr2g0302601 | 33.777 | 376 | 205 | 8 | 429 | 794 | 1215 | 1556 | 2.36e-55 | 207 |
Msa1134790 | MtrunA17_Chr6g0477371 | 33.777 | 376 | 205 | 8 | 429 | 794 | 1206 | 1547 | 4.04e-54 | 204 |
Msa1134790 | MtrunA17_Chr4g0017221 | 33.511 | 376 | 206 | 8 | 429 | 794 | 1190 | 1531 | 9.01e-54 | 203 |
Msa1134790 | MtrunA17_Chr8g0364091 | 44.068 | 177 | 86 | 6 | 125 | 289 | 37 | 212 | 1.41e-36 | 138 |
Msa1134790 | MtrunA17_Chr8g0364111 | 77.273 | 66 | 15 | 0 | 745 | 810 | 3 | 68 | 6.54e-29 | 110 |
Msa1134790 | MtrunA17_Chr5g0427881 | 58.462 | 65 | 27 | 0 | 380 | 444 | 39 | 103 | 6.91e-22 | 91.3 |
Msa1134790 | MtrunA17_Chr5g0427871 | 47.115 | 104 | 46 | 2 | 57 | 151 | 38 | 141 | 8.00e-22 | 92.4 |
Msa1134790 | MtrunA17_Chr3g0087051 | 34.545 | 165 | 84 | 4 | 638 | 794 | 2 | 150 | 1.32e-20 | 89.4 |
Msa1134790 | MtrunA17_Chr2g0306841 | 36.364 | 88 | 56 | 0 | 544 | 631 | 15 | 102 | 1.73e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1134790 | AT1G80740.1 | 51.677 | 805 | 334 | 11 | 42 | 814 | 4 | 785 | 0.0 | 814 |
Msa1134790 | AT1G69770.1 | 51.551 | 838 | 361 | 14 | 1 | 807 | 1 | 824 | 0.0 | 813 |
Msa1134790 | AT4G19020.1 | 50.582 | 773 | 349 | 8 | 57 | 810 | 523 | 1281 | 0.0 | 790 |
Msa1134790 | AT4G19020.2 | 50.582 | 773 | 349 | 8 | 57 | 810 | 475 | 1233 | 0.0 | 790 |
Msa1134790 | AT4G14140.3 | 35.310 | 371 | 206 | 7 | 429 | 794 | 1168 | 1509 | 9.17e-57 | 212 |
Msa1134790 | AT4G14140.1 | 35.310 | 371 | 206 | 7 | 429 | 794 | 1168 | 1509 | 9.17e-57 | 212 |
Msa1134790 | AT4G14140.2 | 35.310 | 371 | 206 | 7 | 429 | 794 | 1194 | 1535 | 1.68e-56 | 211 |
Msa1134790 | AT4G08990.1 | 35.561 | 374 | 201 | 9 | 429 | 794 | 1161 | 1502 | 5.97e-55 | 207 |
Msa1134790 | AT4G13610.1 | 34.409 | 372 | 196 | 8 | 429 | 794 | 1070 | 1399 | 1.07e-53 | 203 |
Msa1134790 | AT5G49160.2 | 32.891 | 377 | 207 | 9 | 429 | 794 | 1095 | 1436 | 2.92e-50 | 192 |
Msa1134790 | AT5G49160.1 | 32.891 | 377 | 207 | 9 | 429 | 794 | 1183 | 1524 | 3.80e-50 | 192 |
Find 203 sgRNAs with CRISPR-Local
Find 400 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATTTGCTGGTGGGTTTC+TGG | 0.008640 | 7_4:-1445843 | Msa1134790:CDS |
ACTTTACTGGATTTGTATTC+TGG | 0.102309 | 7_4:-1447077 | Msa1134790:CDS |
CCAAAACGTACGTGAGTTTC+TGG | 0.160369 | 7_4:+1446838 | None:intergenic |
TTCTAGGCCCTGAATATTAT+TGG | 0.195110 | 7_4:+1443116 | None:intergenic |
TGAAGTCTCACTTTCTATTT+TGG | 0.212259 | 7_4:+1447199 | None:intergenic |
TTGAACCTGCTCAGTGTAAA+TGG | 0.244851 | 7_4:+1449306 | None:intergenic |
TCAACACTTTCAAATGAATC+TGG | 0.268377 | 7_4:-1447179 | Msa1134790:CDS |
ACATTCATTTATACAATTCT+AGG | 0.285423 | 7_4:+1443100 | None:intergenic |
TAGACAACTTGGGTACTTAA+AGG | 0.288833 | 7_4:+1443242 | None:intergenic |
TGTGAGAAGTTTGTACTAAA+TGG | 0.291004 | 7_4:-1446656 | Msa1134790:CDS |
ACATTAGGTTTGGCAATTCT+AGG | 0.297456 | 7_4:-1443297 | Msa1134790:CDS |
TAGGCCTGAGTGGACTTTAC+TGG | 0.302719 | 7_4:-1447090 | Msa1134790:CDS |
CTGATGATTATGCAAGATTC+TGG | 0.311181 | 7_4:-1443069 | Msa1134790:three_prime_UTR |
GATTCTGGAAACATAAAATA+TGG | 0.313320 | 7_4:-1443054 | Msa1134790:three_prime_UTR |
CTTGCCCTTGGATACACATT+AGG | 0.317533 | 7_4:-1443312 | Msa1134790:CDS |
TTCGATTTCTTTCTTCTAGA+AGG | 0.320245 | 7_4:+1449002 | None:intergenic |
TTCTTCAACCGGAGATTGTT+TGG | 0.326628 | 7_4:+1449043 | None:intergenic |
AAATTTGCTGGTGGGTTTCT+GGG | 0.327523 | 7_4:-1445842 | Msa1134790:CDS |
CCAGACTGCTATAAGCTTTG+TGG | 0.329709 | 7_4:-1443890 | Msa1134790:CDS |
AACATTTGAGAAAGTTATAT+AGG | 0.344153 | 7_4:+1447336 | None:intergenic |
CATCCGAGCTTGATAATTCA+TGG | 0.344162 | 7_4:+1445793 | None:intergenic |
ATCCTTTAGATTGTTTAGTT+AGG | 0.347736 | 7_4:-1447543 | Msa1134790:CDS |
CATATGGCCTTCCTCAATTT+CGG | 0.349601 | 7_4:-1445751 | Msa1134790:CDS |
CCACCTTGTCAAGGTGTTAG+TGG | 0.350266 | 7_4:-1445995 | Msa1134790:CDS |
ATGTCCACTGGTCTTTGCTT+TGG | 0.352341 | 7_4:-1447044 | Msa1134790:CDS |
AGATATGGAACCTTCTCCTT+TGG | 0.356040 | 7_4:+1444707 | None:intergenic |
CTTTACTGGATTTGTATTCT+GGG | 0.362248 | 7_4:-1447076 | Msa1134790:CDS |
TTAGTGGTTTCAATCGCTTC+AGG | 0.364770 | 7_4:-1445979 | Msa1134790:CDS |
GTCAAATTAAAGAATGTAAT+AGG | 0.367477 | 7_4:-1447109 | Msa1134790:CDS |
GGGCTCCCATGTATCATAAC+TGG | 0.370498 | 7_4:+1446362 | None:intergenic |
TATCCAAGGGCAAGGGCAAC+AGG | 0.371847 | 7_4:+1443321 | None:intergenic |
AGGAACGACTTCGTCTTGTT+TGG | 0.374277 | 7_4:+1449088 | None:intergenic |
GAAACATAAAATATGGCAAA+TGG | 0.375563 | 7_4:-1443047 | Msa1134790:three_prime_UTR |
GTTCCTGTTGCCCTTGCCCT+TGG | 0.380094 | 7_4:-1443324 | Msa1134790:CDS |
TTCAATCTTTACCGTGTCTT+CGG | 0.381407 | 7_4:+1447717 | None:intergenic |
ACCTGACTCTGAGGTATTTG+AGG | 0.384130 | 7_4:-1446567 | Msa1134790:CDS |
AACACATACCTCTGTTTGAC+AGG | 0.386966 | 7_4:+1443866 | None:intergenic |
GTAAAATATTGTTCTTCATC+AGG | 0.390612 | 7_4:+1447760 | None:intergenic |
AAAAGAGTGTATCTAAAATC+TGG | 0.397497 | 7_4:-1444540 | Msa1134790:CDS |
ACAAATGTCATAGCATAATC+TGG | 0.400607 | 7_4:+1444423 | None:intergenic |
TCCAGAGATGGTGAATTATT+CGG | 0.404648 | 7_4:-1444819 | Msa1134790:intron |
AGACAACTTGGGTACTTAAA+GGG | 0.412259 | 7_4:+1443243 | None:intergenic |
TTGTTTGGCTTTCTTCCGTT+TGG | 0.415225 | 7_4:+1449058 | None:intergenic |
CCTTGGATACACATTAGGTT+TGG | 0.421810 | 7_4:-1443307 | Msa1134790:CDS |
TGGCCAAGGCATTATACCTT+GGG | 0.423475 | 7_4:-1445369 | Msa1134790:CDS |
ACATTTGAGAAAGTTATATA+GGG | 0.426320 | 7_4:+1447337 | None:intergenic |
GCTGAATACAACAGGCCATT+TGG | 0.427862 | 7_4:-1444305 | Msa1134790:intron |
ATGATGGCTGCAGGGTCATA+TGG | 0.428980 | 7_4:-1445767 | Msa1134790:CDS |
TTCCTAACTAAACAATCTAA+AGG | 0.433146 | 7_4:+1447541 | None:intergenic |
TATCGTGAAGCGAAGGTTGA+TGG | 0.441672 | 7_4:-1448667 | Msa1134790:CDS |
CTTCGTCGGAGAACTTATTC+CGG | 0.444090 | 7_4:-1448949 | Msa1134790:CDS |
ATGAGTTGGTAACGGATATG+AGG | 0.447163 | 7_4:+1445579 | None:intergenic |
TAAAGAAAACAAGGTGGAAT+GGG | 0.451055 | 7_4:-1444574 | Msa1134790:CDS |
GAAACCAGTTCTTCTTCAAC+CGG | 0.452190 | 7_4:+1449032 | None:intergenic |
CTAAGAACTCTGTCTTGGTC+TGG | 0.452322 | 7_4:+1443944 | None:intergenic |
CTGGATTTGTATTCTGGGTG+TGG | 0.458568 | 7_4:-1447071 | Msa1134790:CDS |
CTGATGAAGCACAAAAGAAA+TGG | 0.459268 | 7_4:-1448926 | Msa1134790:CDS |
CTTGCATAATCATCAGTTGT+AGG | 0.460358 | 7_4:+1443076 | None:intergenic |
TTTCTTACTTCAAACTCAGT+AGG | 0.462655 | 7_4:+1445532 | None:intergenic |
ATCTCCGGTTGAAGAAGAAC+TGG | 0.462907 | 7_4:-1449036 | Msa1134790:CDS |
CTCAGTAGGGATGACTGATC+TGG | 0.468959 | 7_4:+1445546 | None:intergenic |
CAACACTTTCAAATGAATCT+GGG | 0.470283 | 7_4:-1447178 | Msa1134790:CDS |
CGAATAACAACCTGGTTATG+AGG | 0.471305 | 7_4:+1444233 | None:intergenic |
ATGCTATGACATTTGTTCAC+GGG | 0.472626 | 7_4:-1444416 | Msa1134790:CDS |
TTTCTGGGGCGTTATGCTGT+AGG | 0.473896 | 7_4:-1445827 | Msa1134790:CDS |
CGGATGGGAATGATGGCTGC+AGG | 0.474115 | 7_4:-1445776 | Msa1134790:CDS |
AAAGGACGGGCTAGACAACT+TGG | 0.474566 | 7_4:+1443231 | None:intergenic |
ACAGGCCATTTGGTCGACTT+TGG | 0.475021 | 7_4:-1444295 | Msa1134790:intron |
AATATACCTCAAGCCCTCAA+TGG | 0.475252 | 7_4:+1446341 | None:intergenic |
ACCTCAAATACCTCAGAGTC+AGG | 0.475532 | 7_4:+1446566 | None:intergenic |
TTCGGCTCTGTAAAACCATT+GGG | 0.476357 | 7_4:+1447735 | None:intergenic |
CCACAAAGCTTATAGCAGTC+TGG | 0.481850 | 7_4:+1443890 | None:intergenic |
ACGATTCCAGTTATGATACA+TGG | 0.482110 | 7_4:-1446368 | Msa1134790:CDS |
TGTGTGTGTGCAGGTGATTA+AGG | 0.483671 | 7_4:-1447623 | Msa1134790:intron |
AAACATAAAATATGGCAAAT+GGG | 0.485354 | 7_4:-1443046 | Msa1134790:three_prime_UTR |
GCCATTTGGTCGACTTTGGT+GGG | 0.487889 | 7_4:-1444291 | Msa1134790:CDS |
CGAGAGAATGCAAGGCTACA+AGG | 0.488910 | 7_4:-1443917 | Msa1134790:CDS |
ATTTCCCATTTACACTGAGC+AGG | 0.490849 | 7_4:-1449311 | None:intergenic |
TTTATCAGCTGCATGGACAT+TGG | 0.493693 | 7_4:+1447154 | None:intergenic |
TTCTTACTTCAAACTCAGTA+GGG | 0.495616 | 7_4:+1445533 | None:intergenic |
ATATACCTCAAGCCCTCAAT+GGG | 0.497888 | 7_4:+1446342 | None:intergenic |
CTTCGGCTCTGTAAAACCAT+TGG | 0.499873 | 7_4:+1447734 | None:intergenic |
TCATCATCAACTACATCTAA+AGG | 0.502737 | 7_4:+1443213 | None:intergenic |
GGCCATTTGGTCGACTTTGG+TGG | 0.503320 | 7_4:-1444292 | Msa1134790:CDS |
GATACATGGGAGCCCATTGA+GGG | 0.504051 | 7_4:-1446354 | Msa1134790:CDS |
TGCATATTCATTTATATCCA+CGG | 0.506267 | 7_4:+1446885 | None:intergenic |
CACAAAAGAAATGGCCTCAC+CGG | 0.507084 | 7_4:-1448917 | Msa1134790:CDS |
GAACTCTGTCTTGGTCTGGA+TGG | 0.507573 | 7_4:+1443948 | None:intergenic |
AAAGAAATCGAAGCAATCTT+CGG | 0.508099 | 7_4:-1448991 | Msa1134790:CDS |
GGGTGTGGAGCTATGTCCAC+TGG | 0.509075 | 7_4:-1447056 | Msa1134790:CDS |
TCATCGGTGTTTAATTTCAA+AGG | 0.509674 | 7_4:+1444752 | None:intergenic |
TCAGCAACTAATTGTTTACA+TGG | 0.512928 | 7_4:-1445924 | Msa1134790:CDS |
CACCACAAATAAAATCAGCT+TGG | 0.514779 | 7_4:+1446020 | None:intergenic |
TTAAAGAAAACAAGGTGGAA+TGG | 0.515036 | 7_4:-1444575 | Msa1134790:CDS |
TCCGACGATGCATGCTTCGT+CGG | 0.515548 | 7_4:-1448963 | Msa1134790:CDS |
TTAGATGTAGTTGATGATGA+TGG | 0.517459 | 7_4:-1443210 | Msa1134790:CDS |
GTCCCCAAGGTATAATGCCT+TGG | 0.517822 | 7_4:+1445366 | None:intergenic |
ATCTTTCAGGTGCAATGGAA+GGG | 0.518544 | 7_4:-1446393 | Msa1134790:intron |
AAGAAGATGAATAGTGAAAG+CGG | 0.518886 | 7_4:+1449190 | None:intergenic |
TCAAGCTCGGATGGGAATGA+TGG | 0.519547 | 7_4:-1445783 | Msa1134790:CDS |
CTGGCCAAGGCATTATACCT+TGG | 0.521309 | 7_4:-1445370 | Msa1134790:CDS |
CACTAATGAAAAGTGTCAGC+TGG | 0.523124 | 7_4:-1445389 | Msa1134790:CDS |
AAAACACGCATCCGAAATTG+AGG | 0.524141 | 7_4:+1445740 | None:intergenic |
CAAAACGTACGTGAGTTTCT+GGG | 0.525514 | 7_4:+1446839 | None:intergenic |
TCGTTCCTCATTCTTCCAAA+CGG | 0.526193 | 7_4:-1449073 | Msa1134790:CDS |
TTATAATCTTTCAGGTGCAA+TGG | 0.528275 | 7_4:-1446398 | Msa1134790:intron |
GAAGCCTAAGTATGTTCTCA+TGG | 0.528299 | 7_4:-1445885 | Msa1134790:CDS |
AACAACCTGGTTATGAGGCT+CGG | 0.528328 | 7_4:+1444238 | None:intergenic |
AATCTTTCAGGTGCAATGGA+AGG | 0.528541 | 7_4:-1446394 | Msa1134790:intron |
TCCCACCAAAGTCGACCAAA+TGG | 0.528934 | 7_4:+1444290 | None:intergenic |
CGATTATTTATAAATGAAGC+GGG | 0.529429 | 7_4:+1449225 | None:intergenic |
CATGAATTATCAAGCTCGGA+TGG | 0.529786 | 7_4:-1445792 | Msa1134790:CDS |
GAAGAAAGCCAAACAATCTC+CGG | 0.530553 | 7_4:-1449051 | Msa1134790:CDS |
TTCTTCCGTTTGGAAGAATG+AGG | 0.531258 | 7_4:+1449068 | None:intergenic |
ACAGATTCTGATTTGAATGC+TGG | 0.534166 | 7_4:-1446623 | Msa1134790:CDS |
ATCAACTACATCTAAAGGAC+GGG | 0.535962 | 7_4:+1443218 | None:intergenic |
CCAAACCTAATGTGTATCCA+AGG | 0.536081 | 7_4:+1443307 | None:intergenic |
GAGTGAGGATGAAAGTTTGA+AGG | 0.536508 | 7_4:-1448701 | Msa1134790:CDS |
TTGCCACATTCCAAAGGAGA+AGG | 0.538842 | 7_4:-1444717 | Msa1134790:intron |
AGCAGGTTCAACAAAAGTGC+GGG | 0.539930 | 7_4:-1449294 | Msa1134790:five_prime_UTR |
ATCGTGAAGCGAAGGTTGAT+GGG | 0.542081 | 7_4:-1448666 | Msa1134790:CDS |
TATATCAGATTAAAGAGAAG+TGG | 0.544554 | 7_4:-1445156 | Msa1134790:intron |
TTCTTGCATTAAGCTTGTCA+CGG | 0.545328 | 7_4:-1447012 | Msa1134790:intron |
GCGATTATTTATAAATGAAG+CGG | 0.548121 | 7_4:+1449224 | None:intergenic |
GAATGCTAAGAACTCTGTCT+TGG | 0.555016 | 7_4:+1443939 | None:intergenic |
CTGGATTCAACCTCATGAGT+TGG | 0.555366 | 7_4:+1445565 | None:intergenic |
GAACCTTCTCCTTTGGAATG+TGG | 0.555858 | 7_4:+1444714 | None:intergenic |
GTGGTGAGACTTACAGGAAG+AGG | 0.556985 | 7_4:+1446147 | None:intergenic |
ATGTGCAGGTACATGCAAGT+TGG | 0.560046 | 7_4:-1443360 | Msa1134790:intron |
CTCACTCGTTCTTAGTGTAC+CGG | 0.561833 | 7_4:+1448898 | None:intergenic |
CGTTGTCAAAGGACCGTCAT+CGG | 0.561991 | 7_4:+1443269 | None:intergenic |
AGACTACTCTCTATTTGCTA+TGG | 0.562696 | 7_4:-1446539 | Msa1134790:CDS |
TCTAAAATCTGGAAAGCCGT+TGG | 0.563755 | 7_4:-1444529 | Msa1134790:intron |
AGCGATGATGAAAAGAGCTA+CGG | 0.565697 | 7_4:-1445207 | Msa1134790:CDS |
AAGGGCCGAGCCTCATAACC+AGG | 0.568054 | 7_4:-1444243 | Msa1134790:intron |
ATGAATTATCAAGCTCGGAT+GGG | 0.571223 | 7_4:-1445791 | Msa1134790:CDS |
TGTGGTGGGCCACCTTGTCA+AGG | 0.574035 | 7_4:-1446004 | Msa1134790:CDS |
TTGTGTCCACTGTTGTAACA+AGG | 0.575348 | 7_4:-1444262 | Msa1134790:CDS |
TGAAAAGTGTCAGCTGGCCA+AGG | 0.575456 | 7_4:-1445383 | Msa1134790:CDS |
AATTTGCTGGTGGGTTTCTG+GGG | 0.576721 | 7_4:-1445841 | Msa1134790:CDS |
TTGAATGCTGGTGAAGAAGC+TGG | 0.577481 | 7_4:-1446611 | Msa1134790:CDS |
TTCTCCATGAGAACATACTT+AGG | 0.578027 | 7_4:+1445881 | None:intergenic |
CGCAATTGATGATCTCCCAC+CGG | 0.580227 | 7_4:-1445344 | Msa1134790:intron |
CCTACTCTGAAATATAGTCC+TGG | 0.581965 | 7_4:+1446494 | None:intergenic |
GGACTACATTGCTAAGATTG+TGG | 0.583306 | 7_4:-1447797 | Msa1134790:CDS |
CTAATGTGTATCCAAGGGCA+AGG | 0.584216 | 7_4:+1443313 | None:intergenic |
TGATACATGGGAGCCCATTG+AGG | 0.584875 | 7_4:-1446355 | Msa1134790:CDS |
TGAAAAGACATGGATTAATG+AGG | 0.588868 | 7_4:+1443171 | None:intergenic |
GACAACTTGGGTACTTAAAG+GGG | 0.589664 | 7_4:+1443244 | None:intergenic |
TTAGCATTCGAGAGAATGCA+AGG | 0.591436 | 7_4:-1443925 | Msa1134790:CDS |
GCGATGATGAAAAGAGCTAC+GGG | 0.591951 | 7_4:-1445206 | Msa1134790:CDS |
GCAAACTCTCTCATAGTCAT+CGG | 0.593163 | 7_4:+1444736 | None:intergenic |
TCCGACGAAGCATGCATCGT+CGG | 0.593618 | 7_4:+1448962 | None:intergenic |
TTTAAGTCTACTGAAAGAGT+GGG | 0.594108 | 7_4:-1446687 | Msa1134790:CDS |
TGACTTGAAGAGATGGGCCG+TGG | 0.594840 | 7_4:-1446902 | Msa1134790:intron |
TGGCCATGAATTATCAAGCT+CGG | 0.597417 | 7_4:-1445796 | Msa1134790:CDS |
CGATTCCAGTTATGATACAT+GGG | 0.597731 | 7_4:-1446367 | Msa1134790:CDS |
GGGAGCCCATTGAGGGCTTG+AGG | 0.601086 | 7_4:-1446347 | Msa1134790:intron |
GATAATTCATGGCCACTAGA+CGG | 0.606811 | 7_4:+1445804 | None:intergenic |
ATTCTAGGACTCTCCGATGA+CGG | 0.608856 | 7_4:-1443282 | Msa1134790:CDS |
TGCAGGTGATTAAGGACCAT+GGG | 0.609611 | 7_4:-1447615 | Msa1134790:intron |
TTAAAGGGGAGCGTTGTCAA+AGG | 0.611103 | 7_4:+1443258 | None:intergenic |
TGAGTTGGTAACGGATATGA+GGG | 0.612406 | 7_4:+1445580 | None:intergenic |
TATGCTATGACATTTGTTCA+CGG | 0.613180 | 7_4:-1444417 | Msa1134790:CDS |
GGCAAACTTCAGGGACCTCG+AGG | 0.614201 | 7_4:-1444607 | Msa1134790:CDS |
GATCATCAATTGCGTCCCCA+AGG | 0.614386 | 7_4:+1445353 | None:intergenic |
GTTTCACTATCGTGAAGCGA+AGG | 0.614568 | 7_4:-1448674 | Msa1134790:CDS |
GAGAGTTTGCCACATTCCAA+AGG | 0.615917 | 7_4:-1444723 | Msa1134790:CDS |
AGATAACAGTTGAAAAGACA+TGG | 0.616171 | 7_4:+1443161 | None:intergenic |
CATCAACTACATCTAAAGGA+CGG | 0.616327 | 7_4:+1443217 | None:intergenic |
AATTCAGGTGAGGAATGAGC+CGG | 0.616828 | 7_4:-1446720 | Msa1134790:intron |
ACTTTCTCAAATGTTGACAA+TGG | 0.620113 | 7_4:-1447328 | Msa1134790:intron |
TCAACCTCATGAGTTGGTAA+CGG | 0.622459 | 7_4:+1445571 | None:intergenic |
TTATGCTGTAGGCCGTCTAG+TGG | 0.625272 | 7_4:-1445816 | Msa1134790:CDS |
TGATCATACAGCATACCACT+TGG | 0.627170 | 7_4:+1444779 | None:intergenic |
CACGCATCCGAAATTGAGGA+AGG | 0.629581 | 7_4:+1445744 | None:intergenic |
GCAAACTTCAGGGACCTCGA+GGG | 0.637506 | 7_4:-1444606 | Msa1134790:CDS |
CAAACCTAATGTGTATCCAA+GGG | 0.638670 | 7_4:+1443308 | None:intergenic |
GGATGGGAATGATGGCTGCA+GGG | 0.639348 | 7_4:-1445775 | Msa1134790:CDS |
TAATGTGTATCCAAGGGCAA+GGG | 0.640727 | 7_4:+1443314 | None:intergenic |
AAGAATGTAATAGGCCTGAG+TGG | 0.644520 | 7_4:-1447100 | Msa1134790:CDS |
TGCTCCAAAGCAAAGACCAG+TGG | 0.647355 | 7_4:+1447040 | None:intergenic |
AAATCCAGTAAAGTCCACTC+AGG | 0.651482 | 7_4:+1447086 | None:intergenic |
AGATGATTCACCTGACTCTG+AGG | 0.655360 | 7_4:-1446576 | Msa1134790:CDS |
TGTGTCCACTGTTGTAACAA+GGG | 0.656136 | 7_4:-1444261 | Msa1134790:CDS |
GAGCAGGTTCAACAAAAGTG+CGG | 0.656242 | 7_4:-1449295 | Msa1134790:five_prime_UTR |
ACACATACCTCTGTTTGACA+GGG | 0.662004 | 7_4:+1443867 | None:intergenic |
AAGGACGGGCTAGACAACTT+GGG | 0.665885 | 7_4:+1443232 | None:intergenic |
ATATCCGTTACCAACTCATG+AGG | 0.669953 | 7_4:-1445575 | Msa1134790:CDS |
ATGTCAAAATAGAATTCACA+AGG | 0.670234 | 7_4:+1447373 | None:intergenic |
CTCGGCCCTTGTTACAACAG+TGG | 0.671085 | 7_4:+1444256 | None:intergenic |
GTGCAGGTGATTAAGGACCA+TGG | 0.674534 | 7_4:-1447616 | Msa1134790:intron |
GGCCAAGGCATTATACCTTG+GGG | 0.678055 | 7_4:-1445368 | Msa1134790:CDS |
CATATATACATACTTAGAGG+AGG | 0.681619 | 7_4:+1444392 | None:intergenic |
CCACTAACACCTTGACAAGG+TGG | 0.683957 | 7_4:+1445995 | None:intergenic |
GACTCTCAAAGTGCACCAAG+TGG | 0.685496 | 7_4:-1444794 | Msa1134790:CDS |
TTTGTGGCCCTGTCAAACAG+AGG | 0.688111 | 7_4:-1443874 | Msa1134790:intron |
TCAAAATAGAATTCACAAGG+AGG | 0.689598 | 7_4:+1447376 | None:intergenic |
TGTGCTAGTTAAAGAAAACA+AGG | 0.696627 | 7_4:-1444583 | Msa1134790:CDS |
CTTTAACTAGCACACCCTCG+AGG | 0.704914 | 7_4:+1444592 | None:intergenic |
GCTAGTTAAAGAAAACAAGG+TGG | 0.715923 | 7_4:-1444580 | Msa1134790:CDS |
TCGTTCTTAGTGTACCGGTG+AGG | 0.720228 | 7_4:+1448903 | None:intergenic |
AAACCACTAACACCTTGACA+AGG | 0.729461 | 7_4:+1445992 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAATCATATATAAAATAA+CGG | + | chr7_4:1444257-1444276 | None:intergenic | 10.0% |
!!! | TTTATTTCATGTTGAAATTT+TGG | - | chr7_4:1443723-1443742 | Msa1134790:intron | 15.0% |
!!! | TGTTGAAAATTTTGTTTTTT+AGG | - | chr7_4:1443814-1443833 | Msa1134790:intron | 15.0% |
!!! | GTTGAAAATTTTGTTTTTTA+GGG | - | chr7_4:1443815-1443834 | Msa1134790:intron | 15.0% |
!!! | TGTTGTAAATTTTGTTTTTT+AGG | - | chr7_4:1443852-1443871 | Msa1134790:intron | 15.0% |
!!! | GTTGTAAATTTTGTTTTTTA+GGG | - | chr7_4:1443853-1443872 | Msa1134790:intron | 15.0% |
!!! | TTTTTTTTTTATGTTGATTG+TGG | - | chr7_4:1445032-1445051 | Msa1134790:intron | 15.0% |
!! | CTATAAATTTATAATCTTTC+AGG | - | chr7_4:1445870-1445889 | Msa1134790:CDS | 15.0% |
!!! | ATGAAAGATTTTGTTATAAA+TGG | - | chr7_4:1446087-1446106 | Msa1134790:intron | 15.0% |
!!! | TTTTGTTATAAATGGATATA+AGG | - | chr7_4:1446095-1446114 | Msa1134790:intron | 15.0% |
!!! | TTACTCTAAATGTTTTAAAA+TGG | - | chr7_4:1446633-1446652 | Msa1134790:CDS | 15.0% |
!! | CATATATTTCAATTTCAAAA+TGG | + | chr7_4:1448613-1448632 | None:intergenic | 15.0% |
!! | ATATAGAAGTTAGTTATAAT+AGG | + | chr7_4:1448669-1448688 | None:intergenic | 15.0% |
!!! | AAAAAAAAGTATGAAATCCA+AGG | - | chr7_4:1444167-1444186 | Msa1134790:intron | 20.0% |
!!! | TTTATGGTTATTGTTGATTT+TGG | - | chr7_4:1444621-1444640 | Msa1134790:intron | 20.0% |
!!! | ATGTTGATTTTATATACTAC+AGG | - | chr7_4:1444857-1444876 | Msa1134790:intron | 20.0% |
!! | ACATTTGAGAAAGTTATATA+GGG | + | chr7_4:1444942-1444961 | None:intergenic | 20.0% |
!! | AACATTTGAGAAAGTTATAT+AGG | + | chr7_4:1444943-1444962 | None:intergenic | 20.0% |
!! | GTCAAATTAAAGAATGTAAT+AGG | - | chr7_4:1445167-1445186 | Msa1134790:CDS | 20.0% |
!!! | TAATTTGCATAATGTTTCTT+TGG | - | chr7_4:1445296-1445315 | Msa1134790:intron | 20.0% |
!! | TTGCATAAGATAAAGTTATA+AGG | + | chr7_4:1445816-1445835 | None:intergenic | 20.0% |
!!! | ATAATCAATATCTTGATGAT+TGG | + | chr7_4:1445961-1445980 | None:intergenic | 20.0% |
!!! | TTAAGATTTGCTGTTAATTA+AGG | - | chr7_4:1445999-1446018 | Msa1134790:CDS | 20.0% |
!!! | TCTAAATGTTTTAAAATGGA+AGG | - | chr7_4:1446637-1446656 | Msa1134790:CDS | 20.0% |
!!! | TTTGAGTTTTGAATTATTCT+TGG | - | chr7_4:1447158-1447177 | Msa1134790:CDS | 20.0% |
!! | TATAATTAGAATTGTGTATG+TGG | - | chr7_4:1447342-1447361 | Msa1134790:CDS | 20.0% |
!! | CATAATATCAATTCAAGATA+TGG | + | chr7_4:1447587-1447606 | None:intergenic | 20.0% |
!!! | TTTTAAAGAGGTTTTACAAT+GGG | + | chr7_4:1448118-1448137 | None:intergenic | 20.0% |
!!! | AATACAACATTGTTTTAAAG+AGG | + | chr7_4:1448130-1448149 | None:intergenic | 20.0% |
!! | ATTTCAATTTCAAAATGGAA+GGG | + | chr7_4:1448608-1448627 | None:intergenic | 20.0% |
!! | TATTTCAATTTCAAAATGGA+AGG | + | chr7_4:1448609-1448628 | None:intergenic | 20.0% |
!!! | ATAATAGGTTTATCAGTTTT+TGG | + | chr7_4:1448654-1448673 | None:intergenic | 20.0% |
!! | TTAGGTGTAATATTTCTTAT+TGG | - | chr7_4:1448749-1448768 | Msa1134790:intron | 20.0% |
!! | TTCCATTATTATGTATATCA+TGG | - | chr7_4:1448872-1448891 | Msa1134790:intron | 20.0% |
!!! | TTTTTAAGCCAATAATATTC+AGG | - | chr7_4:1449152-1449171 | Msa1134790:five_prime_UTR | 20.0% |
!!! | TTTTAAGCCAATAATATTCA+GGG | - | chr7_4:1449153-1449172 | Msa1134790:five_prime_UTR | 20.0% |
!! | ACATTCATTTATACAATTCT+AGG | + | chr7_4:1449179-1449198 | None:intergenic | 20.0% |
!! | AAACATAAAATATGGCAAAT+GGG | - | chr7_4:1449230-1449249 | Msa1134790:five_prime_UTR | 20.0% |
! | CGATTATTTATAAATGAAGC+GGG | + | chr7_4:1443054-1443073 | None:intergenic | 25.0% |
! | GCGATTATTTATAAATGAAG+CGG | + | chr7_4:1443055-1443074 | None:intergenic | 25.0% |
!!! | TGTTGAAATTTTGGTGTTTT+AGG | - | chr7_4:1443732-1443751 | Msa1134790:intron | 25.0% |
!!! | GTTGAAATTTTGGTGTTTTA+GGG | - | chr7_4:1443733-1443752 | Msa1134790:intron | 25.0% |
!! | GCTTAAAATTGTGTGTTTTA+TGG | - | chr7_4:1443924-1443943 | Msa1134790:CDS | 25.0% |
!! | TTCATTTCTTTGATTTCTTG+TGG | - | chr7_4:1443947-1443966 | Msa1134790:CDS | 25.0% |
! | TTGATTTCTTGTGGAAAATT+TGG | - | chr7_4:1443956-1443975 | Msa1134790:CDS | 25.0% |
!! | CATGTTGAAAAATGTGTTTT+AGG | - | chr7_4:1444275-1444294 | Msa1134790:CDS | 25.0% |
! | GTAAAATATTGTTCTTCATC+AGG | + | chr7_4:1444519-1444538 | None:intergenic | 25.0% |
! | ATCCTTTAGATTGTTTAGTT+AGG | - | chr7_4:1444733-1444752 | Msa1134790:CDS | 25.0% |
! | TTCCTAACTAAACAATCTAA+AGG | + | chr7_4:1444738-1444757 | None:intergenic | 25.0% |
! | ATGTCAAAATAGAATTCACA+AGG | + | chr7_4:1444906-1444925 | None:intergenic | 25.0% |
! | TGCATATTCATTTATATCCA+CGG | + | chr7_4:1445394-1445413 | None:intergenic | 25.0% |
! | AAAAATCTAGTACTAAGCAA+CGG | + | chr7_4:1446593-1446612 | None:intergenic | 25.0% |
! | GAAATTTACAATCACAACAT+GGG | + | chr7_4:1446813-1446832 | None:intergenic | 25.0% |
! | AGAAATTTACAATCACAACA+TGG | + | chr7_4:1446814-1446833 | None:intergenic | 25.0% |
! | TGTTTGATAAAAGAAAACCA+AGG | + | chr7_4:1447033-1447052 | None:intergenic | 25.0% |
!!! | TTGGTTTTCTTTTATCAAAC+AGG | - | chr7_4:1447032-1447051 | Msa1134790:CDS | 25.0% |
!!! | TATTTTTGAAAATCAGTACG+AGG | + | chr7_4:1447102-1447121 | None:intergenic | 25.0% |
! | TATATCAGATTAAAGAGAAG+TGG | - | chr7_4:1447120-1447139 | Msa1134790:CDS | 25.0% |
!!! | TTCTTGGTTGTTTTCTTTTT+TGG | - | chr7_4:1447174-1447193 | Msa1134790:CDS | 25.0% |
! | ATTTATCAGCTAAAATGTAC+CGG | - | chr7_4:1447278-1447297 | Msa1134790:intron | 25.0% |
!! | AAAAGAGTGTATCTAAAATC+TGG | - | chr7_4:1447736-1447755 | Msa1134790:CDS | 25.0% |
! | TATATGGAAAAAAAAGGTTG+TGG | + | chr7_4:1447829-1447848 | None:intergenic | 25.0% |
!!! | ACAACCTTTTTTTTCCATAT+AGG | - | chr7_4:1447828-1447847 | Msa1134790:intron | 25.0% |
!!! | GTTTTAAAGAGGTTTTACAA+TGG | + | chr7_4:1448119-1448138 | None:intergenic | 25.0% |
! | AATATTACACCTAAAAATCC+TGG | + | chr7_4:1448743-1448762 | None:intergenic | 25.0% |
! | TTCTTATTGGACTAACAATA+TGG | - | chr7_4:1448762-1448781 | Msa1134790:intron | 25.0% |
! | TGCCATGATATACATAATAA+TGG | + | chr7_4:1448877-1448896 | None:intergenic | 25.0% |
!! | GATTCTGGAAACATAAAATA+TGG | - | chr7_4:1449222-1449241 | Msa1134790:five_prime_UTR | 25.0% |
! | GAAACATAAAATATGGCAAA+TGG | - | chr7_4:1449229-1449248 | Msa1134790:five_prime_UTR | 25.0% |
AAGAAGATGAATAGTGAAAG+CGG | + | chr7_4:1443089-1443108 | None:intergenic | 30.0% | |
TTCGATTTCTTTCTTCTAGA+AGG | + | chr7_4:1443277-1443296 | None:intergenic | 30.0% | |
AAAGAAATCGAAGCAATCTT+CGG | - | chr7_4:1443285-1443304 | Msa1134790:CDS | 30.0% | |
! | TAGGGTTTATTTCTTCATGT+TGG | - | chr7_4:1443871-1443890 | Msa1134790:intron | 30.0% |
!!! | TGTATAGTGTTTTGATGAAG+CGG | - | chr7_4:1444140-1444159 | Msa1134790:intron | 30.0% |
! | TAGTAATTTGCCACATCATT+CGG | - | chr7_4:1444192-1444211 | Msa1134790:intron | 30.0% |
! | TGATGTGATGAATGTTGTTT+AGG | - | chr7_4:1444440-1444459 | Msa1134790:intron | 30.0% |
! | GATGTGATGAATGTTGTTTA+GGG | - | chr7_4:1444441-1444460 | Msa1134790:intron | 30.0% |
! | ATGTGATGAATGTTGTTTAG+GGG | - | chr7_4:1444442-1444461 | Msa1134790:intron | 30.0% |
! | AACAATATTTTACTGCCCAA+TGG | - | chr7_4:1444526-1444545 | Msa1134790:intron | 30.0% |
!!! | AACTCTTTCGTGTTTTGTTT+TGG | - | chr7_4:1444586-1444605 | Msa1134790:CDS | 30.0% |
TCAAAATAGAATTCACAAGG+AGG | + | chr7_4:1444903-1444922 | None:intergenic | 30.0% | |
ACTTTCTCAAATGTTGACAA+TGG | - | chr7_4:1444948-1444967 | Msa1134790:intron | 30.0% | |
! | TGAAGTCTCACTTTCTATTT+TGG | + | chr7_4:1445080-1445099 | None:intergenic | 30.0% |
TCAACACTTTCAAATGAATC+TGG | - | chr7_4:1445097-1445116 | Msa1134790:intron | 30.0% | |
CAACACTTTCAAATGAATCT+GGG | - | chr7_4:1445098-1445117 | Msa1134790:intron | 30.0% | |
ACTTTACTGGATTTGTATTC+TGG | - | chr7_4:1445199-1445218 | Msa1134790:CDS | 30.0% | |
CTTTACTGGATTTGTATTCT+GGG | - | chr7_4:1445200-1445219 | Msa1134790:CDS | 30.0% | |
!!! | TTGTTTTTGACTTGAAGAGA+TGG | - | chr7_4:1445367-1445386 | Msa1134790:CDS | 30.0% |
!!! | TGTTTTTGACTTGAAGAGAT+GGG | - | chr7_4:1445368-1445387 | Msa1134790:CDS | 30.0% |
CTTTCCAAAATGTCAAATTC+AGG | - | chr7_4:1445541-1445560 | Msa1134790:CDS | 30.0% | |
!! | TTTTAAGTCTACTGAAAGAG+TGG | - | chr7_4:1445588-1445607 | Msa1134790:CDS | 30.0% |
TTTAAGTCTACTGAAAGAGT+GGG | - | chr7_4:1445589-1445608 | Msa1134790:CDS | 30.0% | |
TGTGAGAAGTTTGTACTAAA+TGG | - | chr7_4:1445620-1445639 | Msa1134790:intron | 30.0% | |
! | TTATAATCTTTCAGGTGCAA+TGG | - | chr7_4:1445878-1445897 | Msa1134790:CDS | 30.0% |
TTGAGTACAAGTCAATAATG+AGG | + | chr7_4:1446156-1446175 | None:intergenic | 30.0% | |
!! | AAGCTGATTTTATTTGTGGT+GGG | - | chr7_4:1446258-1446277 | Msa1134790:intron | 30.0% |
!!! | TGATTTTTTTCATCCTCCAA+TGG | + | chr7_4:1446335-1446354 | None:intergenic | 30.0% |
TCAGCAACTAATTGTTTACA+TGG | - | chr7_4:1446352-1446371 | Msa1134790:CDS | 30.0% | |
!!! | GTTGACATTTTGAAATTTGC+TGG | - | chr7_4:1446422-1446441 | Msa1134790:intron | 30.0% |
!!! | ACATTTTGAAATTTGCTGGT+GGG | - | chr7_4:1446426-1446445 | Msa1134790:intron | 30.0% |
TTCTTACTTCAAACTCAGTA+GGG | + | chr7_4:1446746-1446765 | None:intergenic | 30.0% | |
TTTCTTACTTCAAACTCAGT+AGG | + | chr7_4:1446747-1446766 | None:intergenic | 30.0% | |
TCTTTGTACTTTCATAATGC+AGG | - | chr7_4:1446845-1446864 | Msa1134790:intron | 30.0% | |
TTTGATTCCATTTCTTTCCT+TGG | - | chr7_4:1447013-1447032 | Msa1134790:CDS | 30.0% | |
AAGAAAACCAAGGAAAGAAA+TGG | + | chr7_4:1447023-1447042 | None:intergenic | 30.0% | |
CAAAATGCAGTTCATATATG+CGG | + | chr7_4:1447304-1447323 | None:intergenic | 30.0% | |
! | TCATCGGTGTTTAATTTCAA+AGG | + | chr7_4:1447527-1447546 | None:intergenic | 30.0% |
TGTGCTAGTTAAAGAAAACA+AGG | - | chr7_4:1447693-1447712 | Msa1134790:intron | 30.0% | |
TTAAAGAAAACAAGGTGGAA+TGG | - | chr7_4:1447701-1447720 | Msa1134790:intron | 30.0% | |
TAAAGAAAACAAGGTGGAAT+GGG | - | chr7_4:1447702-1447721 | Msa1134790:intron | 30.0% | |
! | AGATACACTCTTTTAACAGA+CGG | + | chr7_4:1447730-1447749 | None:intergenic | 30.0% |
TACTAATTCTGTCTTGTCTT+AGG | - | chr7_4:1447770-1447789 | Msa1134790:CDS | 30.0% | |
ACTAATTCTGTCTTGTCTTA+GGG | - | chr7_4:1447771-1447790 | Msa1134790:CDS | 30.0% | |
GGAACCTATATGGAAAAAAA+AGG | + | chr7_4:1447835-1447854 | None:intergenic | 30.0% | |
ACAAATGTCATAGCATAATC+TGG | + | chr7_4:1447856-1447875 | None:intergenic | 30.0% | |
TATGCTATGACATTTGTTCA+CGG | - | chr7_4:1447859-1447878 | Msa1134790:intron | 30.0% | |
CATATATACATACTTAGAGG+AGG | + | chr7_4:1447887-1447906 | None:intergenic | 30.0% | |
GCACATATATACATACTTAG+AGG | + | chr7_4:1447890-1447909 | None:intergenic | 30.0% | |
!!! | ATCTGACCATGTTTTTTGTT+TGG | - | chr7_4:1448205-1448224 | Msa1134790:intron | 30.0% |
TCCAAAGTTATTCCATTTCT+AGG | - | chr7_4:1448298-1448317 | Msa1134790:intron | 30.0% | |
TATGAAAATTTGTGTATGCG+AGG | + | chr7_4:1448509-1448528 | None:intergenic | 30.0% | |
TCATATGAAGTTTACAGACA+AGG | - | chr7_4:1448562-1448581 | Msa1134790:intron | 30.0% | |
!!! | TTTTTGGTTAAGGAATTGGA+AGG | + | chr7_4:1448638-1448657 | None:intergenic | 30.0% |
!!! | TCAGTTTTTGGTTAAGGAAT+TGG | + | chr7_4:1448642-1448661 | None:intergenic | 30.0% |
!!! | GGTTTATCAGTTTTTGGTTA+AGG | + | chr7_4:1448648-1448667 | None:intergenic | 30.0% |
TATTTCCATCTTTAATGTGC+AGG | - | chr7_4:1448902-1448921 | Msa1134790:intron | 30.0% | |
TCATCATCAACTACATCTAA+AGG | + | chr7_4:1449066-1449085 | None:intergenic | 30.0% | |
!! | TTAGATGTAGTTGATGATGA+TGG | - | chr7_4:1449066-1449085 | Msa1134790:CDS | 30.0% |
! | TGAAAAGACATGGATTAATG+AGG | + | chr7_4:1449108-1449127 | None:intergenic | 30.0% |
AGATAACAGTTGAAAAGACA+TGG | + | chr7_4:1449118-1449137 | None:intergenic | 30.0% | |
!!! | GCGTTTTTGAGGCATTTTTA+AGG | + | chr7_4:1443155-1443174 | None:intergenic | 35.0% |
CTGATGAAGCACAAAAGAAA+TGG | - | chr7_4:1443350-1443369 | Msa1134790:CDS | 35.0% | |
! | TGATGGGATTTTATATCAGC+TGG | - | chr7_4:1443626-1443645 | Msa1134790:intron | 35.0% |
! | GTTTTGTGGTACAATCATTC+GGG | + | chr7_4:1444055-1444074 | None:intergenic | 35.0% |
! | CGTTTTGTGGTACAATCATT+CGG | + | chr7_4:1444056-1444075 | None:intergenic | 35.0% |
! | TAGCCAGTAAAAATTTTGCC+TGG | - | chr7_4:1444092-1444111 | Msa1134790:intron | 35.0% |
TGTGGCAAATTACTATTCCT+TGG | + | chr7_4:1444187-1444206 | None:intergenic | 35.0% | |
! | AGTAATTTGCCACATCATTC+GGG | - | chr7_4:1444193-1444212 | Msa1134790:intron | 35.0% |
! | TGTGATGAATGTTGTTTAGG+GGG | - | chr7_4:1444443-1444462 | Msa1134790:intron | 35.0% |
TTCAATCTTTACCGTGTCTT+CGG | + | chr7_4:1444562-1444581 | None:intergenic | 35.0% | |
!! | TTGGTTTGCTTTGCTGTTTA+TGG | - | chr7_4:1444605-1444624 | Msa1134790:CDS | 35.0% |
! | TTTTGTCAACTAGATTCCCA+TGG | + | chr7_4:1444680-1444699 | None:intergenic | 35.0% |
GGAATCTAGTTGACAAAAAG+AGG | - | chr7_4:1444682-1444701 | Msa1134790:intron | 35.0% | |
GCTGATAAAAATGCGGTTAA+AGG | - | chr7_4:1445136-1445155 | Msa1134790:intron | 35.0% | |
TTCTTGCATTAAGCTTGTCA+CGG | - | chr7_4:1445264-1445283 | Msa1134790:intron | 35.0% | |
! | CTCACCTGAATTTGACATTT+TGG | + | chr7_4:1445548-1445567 | None:intergenic | 35.0% |
CAAAATGTCAAATTCAGGTG+AGG | - | chr7_4:1445546-1445565 | Msa1134790:CDS | 35.0% | |
AGACTTAAAAAGTCTTCTGC+CGG | + | chr7_4:1445578-1445597 | None:intergenic | 35.0% | |
! | ACAGATTCTGATTTGAATGC+TGG | - | chr7_4:1445653-1445672 | Msa1134790:intron | 35.0% |
! | AGACTACTCTCTATTTGCTA+TGG | - | chr7_4:1445737-1445756 | Msa1134790:CDS | 35.0% |
ACGATTCCAGTTATGATACA+TGG | - | chr7_4:1445908-1445927 | Msa1134790:CDS | 35.0% | |
CGATTCCAGTTATGATACAT+GGG | - | chr7_4:1445909-1445928 | Msa1134790:CDS | 35.0% | |
TACAAGTCAATAATGAGGAG+TGG | + | chr7_4:1446151-1446170 | None:intergenic | 35.0% | |
AACCATTAGAGGTGAAAGAA+GGG | + | chr7_4:1446180-1446199 | None:intergenic | 35.0% | |
AAACCATTAGAGGTGAAAGA+AGG | + | chr7_4:1446181-1446200 | None:intergenic | 35.0% | |
!! | GACAGTTGATAAACCATTAG+AGG | + | chr7_4:1446191-1446210 | None:intergenic | 35.0% |
TACTACTTCATGCTTGTCTA+GGG | - | chr7_4:1446233-1446252 | Msa1134790:intron | 35.0% | |
CACCACAAATAAAATCAGCT+TGG | + | chr7_4:1446259-1446278 | None:intergenic | 35.0% | |
!! | CAAGCTGATTTTATTTGTGG+TGG | - | chr7_4:1446257-1446276 | Msa1134790:intron | 35.0% |
TTCTCCATGAGAACATACTT+AGG | + | chr7_4:1446398-1446417 | None:intergenic | 35.0% | |
!!! | GACATTTTGAAATTTGCTGG+TGG | - | chr7_4:1446425-1446444 | Msa1134790:intron | 35.0% |
ATGAATTATCAAGCTCGGAT+GGG | - | chr7_4:1446485-1446504 | Msa1134790:intron | 35.0% | |
! | TTGTGCCCTTTTCTTAGATA+AGG | - | chr7_4:1446785-1446804 | Msa1134790:intron | 35.0% |
GGGTTCCTTATCTAAGAAAA+GGG | + | chr7_4:1446793-1446812 | None:intergenic | 35.0% | |
TGGGTTCCTTATCTAAGAAA+AGG | + | chr7_4:1446794-1446813 | None:intergenic | 35.0% | |
ATTGCAATGAAAGATGTCAG+TGG | - | chr7_4:1447206-1447225 | Msa1134790:intron | 35.0% | |
! | AACTGCATTTTGTCTTACTC+TGG | - | chr7_4:1447312-1447331 | Msa1134790:intron | 35.0% |
GCATATTGTTACATGTCACA+TGG | - | chr7_4:1447370-1447389 | Msa1134790:CDS | 35.0% | |
! | CCAATTCAAGTTAGTGATGA+AGG | + | chr7_4:1447416-1447435 | None:intergenic | 35.0% |
CCTTCATCACTAACTTGAAT+TGG | - | chr7_4:1447413-1447432 | Msa1134790:intron | 35.0% | |
! | ATATGTTTCTACTCCAGAGA+TGG | - | chr7_4:1447445-1447464 | Msa1134790:intron | 35.0% |
TCCAGAGATGGTGAATTATT+CGG | - | chr7_4:1447457-1447476 | Msa1134790:intron | 35.0% | |
GCTAGTTAAAGAAAACAAGG+TGG | - | chr7_4:1447696-1447715 | Msa1134790:intron | 35.0% | |
! | GATACACTCTTTTAACAGAC+GGG | + | chr7_4:1447729-1447748 | None:intergenic | 35.0% |
CAAGACAGAATTAGTACCAA+CGG | + | chr7_4:1447766-1447785 | None:intergenic | 35.0% | |
! | AGCATAATCTGGAACCTATA+TGG | + | chr7_4:1447845-1447864 | None:intergenic | 35.0% |
ATGCTATGACATTTGTTCAC+GGG | - | chr7_4:1447860-1447879 | Msa1134790:intron | 35.0% | |
ATGTATCTGCTGAATACAAC+AGG | - | chr7_4:1447963-1447982 | Msa1134790:intron | 35.0% | |
! | AAAGAGGTTTTACAATGGGA+GGG | + | chr7_4:1448114-1448133 | None:intergenic | 35.0% |
! | TAAAGAGGTTTTACAATGGG+AGG | + | chr7_4:1448115-1448134 | None:intergenic | 35.0% |
TGAGAAATGTTATCGACCTT+AGG | - | chr7_4:1448150-1448169 | Msa1134790:intron | 35.0% | |
ATGCTAACATGATCATCCTA+AGG | + | chr7_4:1448169-1448188 | None:intergenic | 35.0% | |
ACAGGTCCAAACAAAAAACA+TGG | + | chr7_4:1448214-1448233 | None:intergenic | 35.0% | |
GCCTAGAAATGGAATAACTT+TGG | + | chr7_4:1448302-1448321 | None:intergenic | 35.0% | |
GTTCAAACTGGTATCTTATC+TGG | - | chr7_4:1448430-1448449 | Msa1134790:intron | 35.0% | |
ATGAAGTTTACAGACAAGGA+TGG | - | chr7_4:1448566-1448585 | Msa1134790:intron | 35.0% | |
ATGTACCTGCACATTAAAGA+TGG | + | chr7_4:1448910-1448929 | None:intergenic | 35.0% | |
CAAACCTAATGTGTATCCAA+GGG | + | chr7_4:1448971-1448990 | None:intergenic | 35.0% | |
ACATTAGGTTTGGCAATTCT+AGG | - | chr7_4:1448979-1448998 | Msa1134790:CDS | 35.0% | |
AGACAACTTGGGTACTTAAA+GGG | + | chr7_4:1449036-1449055 | None:intergenic | 35.0% | |
TAGACAACTTGGGTACTTAA+AGG | + | chr7_4:1449037-1449056 | None:intergenic | 35.0% | |
ATCAACTACATCTAAAGGAC+GGG | + | chr7_4:1449061-1449080 | None:intergenic | 35.0% | |
CATCAACTACATCTAAAGGA+CGG | + | chr7_4:1449062-1449081 | None:intergenic | 35.0% | |
TTCTAGGCCCTGAATATTAT+TGG | + | chr7_4:1449163-1449182 | None:intergenic | 35.0% | |
CTTGCATAATCATCAGTTGT+AGG | + | chr7_4:1449203-1449222 | None:intergenic | 35.0% | |
CTGATGATTATGCAAGATTC+TGG | - | chr7_4:1449207-1449226 | Msa1134790:five_prime_UTR | 35.0% | |
! | GATTTACGAACGCGTTTTTG+AGG | + | chr7_4:1443166-1443185 | None:intergenic | 40.0% |
TCGTTCCTCATTCTTCCAAA+CGG | - | chr7_4:1443203-1443222 | Msa1134790:CDS | 40.0% | |
TTCTTCCGTTTGGAAGAATG+AGG | + | chr7_4:1443211-1443230 | None:intergenic | 40.0% | |
!! | TTGTTTGGCTTTCTTCCGTT+TGG | + | chr7_4:1443221-1443240 | None:intergenic | 40.0% |
GAAGAAAGCCAAACAATCTC+CGG | - | chr7_4:1443225-1443244 | Msa1134790:CDS | 40.0% | |
TTCTTCAACCGGAGATTGTT+TGG | + | chr7_4:1443236-1443255 | None:intergenic | 40.0% | |
GAAACCAGTTCTTCTTCAAC+CGG | + | chr7_4:1443247-1443266 | None:intergenic | 40.0% | |
! | TTCTTTTGTGCTTCATCAGC+CGG | + | chr7_4:1443349-1443368 | None:intergenic | 40.0% |
! | GTTTTGTAGTGAATCGAGTG+AGG | - | chr7_4:1443560-1443579 | Msa1134790:intron | 40.0% |
GAGTGAGGATGAAAGTTTGA+AGG | - | chr7_4:1443575-1443594 | Msa1134790:intron | 40.0% | |
! | TGGGATTTTATATCAGCTGG+AGG | - | chr7_4:1443629-1443648 | Msa1134790:intron | 40.0% |
! | GGAGGATAATGCTTTTGTCA+AGG | - | chr7_4:1443647-1443666 | Msa1134790:intron | 40.0% |
! | TTCATTTCGCGAACGTTTTG+TGG | + | chr7_4:1444069-1444088 | None:intergenic | 40.0% |
! | CAGTAAAAATTTTGCCTGGC+CGG | - | chr7_4:1444096-1444115 | Msa1134790:intron | 40.0% |
GGACTACATTGCTAAGATTG+TGG | - | chr7_4:1444479-1444498 | Msa1134790:intron | 40.0% | |
TTCGGCTCTGTAAAACCATT+GGG | + | chr7_4:1444544-1444563 | None:intergenic | 40.0% | |
TGATTTGAATGTGTGTGTGC+AGG | - | chr7_4:1444644-1444663 | Msa1134790:intron | 40.0% | |
! | CTACATGAAGCACTTACATC+AGG | + | chr7_4:1444783-1444802 | None:intergenic | 40.0% |
TTTGGCAGCTGTATCAATCA+GGG | + | chr7_4:1445062-1445081 | None:intergenic | 40.0% | |
! | TTTTGGCAGCTGTATCAATC+AGG | + | chr7_4:1445063-1445082 | None:intergenic | 40.0% |
TTTATCAGCTGCATGGACAT+TGG | + | chr7_4:1445125-1445144 | None:intergenic | 40.0% | |
CCATGCAGCTGATAAAAATG+CGG | - | chr7_4:1445129-1445148 | Msa1134790:intron | 40.0% | |
AAGAATGTAATAGGCCTGAG+TGG | - | chr7_4:1445176-1445195 | Msa1134790:CDS | 40.0% | |
AAATCCAGTAAAGTCCACTC+AGG | + | chr7_4:1445193-1445212 | None:intergenic | 40.0% | |
CAAAACGTACGTGAGTTTCT+GGG | + | chr7_4:1445440-1445459 | None:intergenic | 40.0% | |
!! | CCTGGTTTTTCATCTTCGTT+GGG | + | chr7_4:1445767-1445786 | None:intergenic | 40.0% |
!! | TCCTGGTTTTTCATCTTCGT+TGG | + | chr7_4:1445768-1445787 | None:intergenic | 40.0% |
!! | CCTACTCTGAAATATAGTCC+TGG | + | chr7_4:1445785-1445804 | None:intergenic | 40.0% |
CCAGGACTATATTTCAGAGT+AGG | - | chr7_4:1445782-1445801 | Msa1134790:CDS | 40.0% | |
! | AATCTTTCAGGTGCAATGGA+AGG | - | chr7_4:1445882-1445901 | Msa1134790:CDS | 40.0% |
! | ATCTTTCAGGTGCAATGGAA+GGG | - | chr7_4:1445883-1445902 | Msa1134790:CDS | 40.0% |
ATATACCTCAAGCCCTCAAT+GGG | + | chr7_4:1445937-1445956 | None:intergenic | 40.0% | |
AATATACCTCAAGCCCTCAA+TGG | + | chr7_4:1445938-1445957 | None:intergenic | 40.0% | |
ACCATTAGAGGTGAAAGAAG+GGG | + | chr7_4:1446179-1446198 | None:intergenic | 40.0% | |
GTACTACTTCATGCTTGTCT+AGG | - | chr7_4:1446232-1446251 | Msa1134790:intron | 40.0% | |
!! | GGCCAAGCTGATTTTATTTG+TGG | - | chr7_4:1446254-1446273 | Msa1134790:intron | 40.0% |
AAACCACTAACACCTTGACA+AGG | + | chr7_4:1446287-1446306 | None:intergenic | 40.0% | |
TTAGTGGTTTCAATCGCTTC+AGG | - | chr7_4:1446297-1446316 | Msa1134790:intron | 40.0% | |
CAGGAACAAAAATGCTCCAT+TGG | - | chr7_4:1446316-1446335 | Msa1134790:intron | 40.0% | |
GAACAAAAATGCTCCATTGG+AGG | - | chr7_4:1446319-1446338 | Msa1134790:intron | 40.0% | |
GAAGCCTAAGTATGTTCTCA+TGG | - | chr7_4:1446391-1446410 | Msa1134790:intron | 40.0% | |
!! | AAATTTGCTGGTGGGTTTCT+GGG | - | chr7_4:1446434-1446453 | Msa1134790:intron | 40.0% |
GATAATTCATGGCCACTAGA+CGG | + | chr7_4:1446475-1446494 | None:intergenic | 40.0% | |
TGGCCATGAATTATCAAGCT+CGG | - | chr7_4:1446480-1446499 | Msa1134790:intron | 40.0% | |
! | CATCCGAGCTTGATAATTCA+TGG | + | chr7_4:1446486-1446505 | None:intergenic | 40.0% |
CATGAATTATCAAGCTCGGA+TGG | - | chr7_4:1446484-1446503 | Msa1134790:intron | 40.0% | |
CATATGGCCTTCCTCAATTT+CGG | - | chr7_4:1446525-1446544 | Msa1134790:CDS | 40.0% | |
AAAACACGCATCCGAAATTG+AGG | + | chr7_4:1446539-1446558 | None:intergenic | 40.0% | |
! | TTCGGATGCGTGTTTTTCTT+TGG | - | chr7_4:1446543-1446562 | Msa1134790:CDS | 40.0% |
! | TCGGATGCGTGTTTTTCTTT+GGG | - | chr7_4:1446544-1446563 | Msa1134790:CDS | 40.0% |
! | GAGCTCTAACTACTGAAGTA+AGG | - | chr7_4:1446567-1446586 | Msa1134790:CDS | 40.0% |
!! | TGAGTTGGTAACGGATATGA+GGG | + | chr7_4:1446699-1446718 | None:intergenic | 40.0% |
!! | ATGAGTTGGTAACGGATATG+AGG | + | chr7_4:1446700-1446719 | None:intergenic | 40.0% |
ATATCCGTTACCAACTCATG+AGG | - | chr7_4:1446701-1446720 | Msa1134790:CDS | 40.0% | |
!! | TCAACCTCATGAGTTGGTAA+CGG | + | chr7_4:1446708-1446727 | None:intergenic | 40.0% |
! | CAGCTGACACTTTTCATTAG+TGG | + | chr7_4:1446889-1446908 | None:intergenic | 40.0% |
!! | CACTAATGAAAAGTGTCAGC+TGG | - | chr7_4:1446887-1446906 | Msa1134790:CDS | 40.0% |
AGCAAAAACAACATACCGGT+GGG | + | chr7_4:1446950-1446969 | None:intergenic | 40.0% | |
AGCGATGATGAAAAGAGCTA+CGG | - | chr7_4:1447069-1447088 | Msa1134790:CDS | 40.0% | |
TGATCATACAGCATACCACT+TGG | + | chr7_4:1447500-1447519 | None:intergenic | 40.0% | |
GCAAACTCTCTCATAGTCAT+CGG | + | chr7_4:1447543-1447562 | None:intergenic | 40.0% | |
AGATATGGAACCTTCTCCTT+TGG | + | chr7_4:1447572-1447591 | None:intergenic | 40.0% | |
! | TTGTGCTTGCTTGCCTTTTT+AGG | - | chr7_4:1447645-1447664 | Msa1134790:intron | 40.0% |
! | TGTGCTTGCTTGCCTTTTTA+GGG | - | chr7_4:1447646-1447665 | Msa1134790:intron | 40.0% |
!! | TTTTTAGGGGGCAAACTTCA+GGG | - | chr7_4:1447660-1447679 | Msa1134790:intron | 40.0% |
! | TCTAAAATCTGGAAAGCCGT+TGG | - | chr7_4:1447747-1447766 | Msa1134790:CDS | 40.0% |
TTGTGTCCACTGTTGTAACA+AGG | - | chr7_4:1448014-1448033 | Msa1134790:intron | 40.0% | |
TGTGTCCACTGTTGTAACAA+GGG | - | chr7_4:1448015-1448034 | Msa1134790:intron | 40.0% | |
CGAATAACAACCTGGTTATG+AGG | + | chr7_4:1448046-1448065 | None:intergenic | 40.0% | |
CACAACTTCGAATAACAACC+TGG | + | chr7_4:1448054-1448073 | None:intergenic | 40.0% | |
GAATGCTAAGAACTCTGTCT+TGG | + | chr7_4:1448340-1448359 | None:intergenic | 40.0% | |
TTAGCATTCGAGAGAATGCA+AGG | - | chr7_4:1448351-1448370 | Msa1134790:intron | 40.0% | |
ACACATACCTCTGTTTGACA+GGG | + | chr7_4:1448412-1448431 | None:intergenic | 40.0% | |
AACACATACCTCTGTTTGAC+AGG | + | chr7_4:1448413-1448432 | None:intergenic | 40.0% | |
! | ACAGAGGTATGTGTTCAAAC+TGG | - | chr7_4:1448418-1448437 | Msa1134790:intron | 40.0% |
ACTGCTCAATAACTCTCCTA+AGG | - | chr7_4:1448710-1448729 | Msa1134790:CDS | 40.0% | |
CTGCTCAATAACTCTCCTAA+GGG | - | chr7_4:1448711-1448730 | Msa1134790:intron | 40.0% | |
TAATGTGTATCCAAGGGCAA+GGG | + | chr7_4:1448965-1448984 | None:intergenic | 40.0% | |
CCAAACCTAATGTGTATCCA+AGG | + | chr7_4:1448972-1448991 | None:intergenic | 40.0% | |
CCTTGGATACACATTAGGTT+TGG | - | chr7_4:1448969-1448988 | Msa1134790:CDS | 40.0% | |
GACAACTTGGGTACTTAAAG+GGG | + | chr7_4:1449035-1449054 | None:intergenic | 40.0% | |
GAGCAGGTTCAACAAAAGTG+CGG | - | chr7_4:1442981-1443000 | Msa1134790:three_prime_UTR | 45.0% | |
! | AGCAGGTTCAACAAAAGTGC+GGG | - | chr7_4:1442982-1443001 | Msa1134790:three_prime_UTR | 45.0% |
! | AGGAACGACTTCGTCTTGTT+TGG | + | chr7_4:1443191-1443210 | None:intergenic | 45.0% |
ATCTCCGGTTGAAGAAGAAC+TGG | - | chr7_4:1443240-1443259 | Msa1134790:CDS | 45.0% | |
CTTCGTCGGAGAACTTATTC+CGG | - | chr7_4:1443327-1443346 | Msa1134790:CDS | 45.0% | |
CACAAAAGAAATGGCCTCAC+CGG | - | chr7_4:1443359-1443378 | Msa1134790:intron | 45.0% | |
CTCACTCGTTCTTAGTGTAC+CGG | + | chr7_4:1443381-1443400 | None:intergenic | 45.0% | |
GTTTCACTATCGTGAAGCGA+AGG | - | chr7_4:1443602-1443621 | Msa1134790:intron | 45.0% | |
TATCGTGAAGCGAAGGTTGA+TGG | - | chr7_4:1443609-1443628 | Msa1134790:intron | 45.0% | |
! | ATCGTGAAGCGAAGGTTGAT+GGG | - | chr7_4:1443610-1443629 | Msa1134790:intron | 45.0% |
! | CGGCCAGGCAAAATTTTTAC+TGG | + | chr7_4:1444098-1444117 | None:intergenic | 45.0% |
AGCGAATGTGTATTCGCGAT+TGG | + | chr7_4:1444221-1444240 | None:intergenic | 45.0% | |
! | GATGAATGTTGTTTAGGGGG+AGG | - | chr7_4:1444446-1444465 | Msa1134790:intron | 45.0% |
! | AATGTTGTTTAGGGGGAGGA+AGG | - | chr7_4:1444450-1444469 | Msa1134790:intron | 45.0% |
CTTCGGCTCTGTAAAACCAT+TGG | + | chr7_4:1444545-1444564 | None:intergenic | 45.0% | |
! | GTTTTACAGAGCCGAAGACA+CGG | - | chr7_4:1444548-1444567 | Msa1134790:CDS | 45.0% |
TGTGTGTGTGCAGGTGATTA+AGG | - | chr7_4:1444653-1444672 | Msa1134790:intron | 45.0% | |
TGCAGGTGATTAAGGACCAT+GGG | - | chr7_4:1444661-1444680 | Msa1134790:intron | 45.0% | |
! | CCGCATTTTTATCAGCTGCA+TGG | + | chr7_4:1445132-1445151 | None:intergenic | 45.0% |
CTGGATTTGTATTCTGGGTG+TGG | - | chr7_4:1445205-1445224 | Msa1134790:CDS | 45.0% | |
!! | ATGTCCACTGGTCTTTGCTT+TGG | - | chr7_4:1445232-1445251 | Msa1134790:intron | 45.0% |
CCAAAACGTACGTGAGTTTC+TGG | + | chr7_4:1445441-1445460 | None:intergenic | 45.0% | |
! | CCAGAAACTCACGTACGTTT+TGG | - | chr7_4:1445438-1445457 | Msa1134790:intron | 45.0% |
AATTCAGGTGAGGAATGAGC+CGG | - | chr7_4:1445556-1445575 | Msa1134790:CDS | 45.0% | |
TTGAATGCTGGTGAAGAAGC+TGG | - | chr7_4:1445665-1445684 | Msa1134790:intron | 45.0% | |
AGATGATTCACCTGACTCTG+AGG | - | chr7_4:1445700-1445719 | Msa1134790:intron | 45.0% | |
!! | ACCTGACTCTGAGGTATTTG+AGG | - | chr7_4:1445709-1445728 | Msa1134790:intron | 45.0% |
ACCTCAAATACCTCAGAGTC+AGG | + | chr7_4:1445713-1445732 | None:intergenic | 45.0% | |
CCCAACGAAGATGAAAAACC+AGG | - | chr7_4:1445764-1445783 | Msa1134790:CDS | 45.0% | |
ACCCCTTCTTTCACCTCTAA+TGG | - | chr7_4:1446175-1446194 | Msa1134790:CDS | 45.0% | |
!! | GAAATTTGCTGGTGGGTTTC+TGG | - | chr7_4:1446433-1446452 | Msa1134790:intron | 45.0% |
!! | AATTTGCTGGTGGGTTTCTG+GGG | - | chr7_4:1446435-1446454 | Msa1134790:intron | 45.0% |
! | CGGATGCGTGTTTTTCTTTG+GGG | - | chr7_4:1446545-1446564 | Msa1134790:CDS | 45.0% |
CTGGATTCAACCTCATGAGT+TGG | + | chr7_4:1446714-1446733 | None:intergenic | 45.0% | |
! | TGGCCAAGGCATTATACCTT+GGG | - | chr7_4:1446907-1446926 | Msa1134790:intron | 45.0% |
GAGCAAAAACAACATACCGG+TGG | + | chr7_4:1446951-1446970 | None:intergenic | 45.0% | |
GCGATGATGAAAAGAGCTAC+GGG | - | chr7_4:1447070-1447089 | Msa1134790:CDS | 45.0% | |
ATGCAGTTCATATATGCGGC+CGG | + | chr7_4:1447300-1447319 | None:intergenic | 45.0% | |
GCCGAATAATTCACCATCTC+TGG | + | chr7_4:1447461-1447480 | None:intergenic | 45.0% | |
GAGAGTTTGCCACATTCCAA+AGG | - | chr7_4:1447553-1447572 | Msa1134790:CDS | 45.0% | |
TTGCCACATTCCAAAGGAGA+AGG | - | chr7_4:1447559-1447578 | Msa1134790:CDS | 45.0% | |
!! | GAACCTTCTCCTTTGGAATG+TGG | + | chr7_4:1447565-1447584 | None:intergenic | 45.0% |
! | GTGCTTGCTTGCCTTTTTAG+GGG | - | chr7_4:1447647-1447666 | Msa1134790:intron | 45.0% |
!! | TGCTTGCTTGCCTTTTTAGG+GGG | - | chr7_4:1447648-1447667 | Msa1134790:intron | 45.0% |
CTGAAGTTTGCCCCCTAAAA+AGG | + | chr7_4:1447661-1447680 | None:intergenic | 45.0% | |
!! | CTTTTTAGGGGGCAAACTTC+AGG | - | chr7_4:1447659-1447678 | Msa1134790:intron | 45.0% |
GCTGAATACAACAGGCCATT+TGG | - | chr7_4:1447971-1447990 | Msa1134790:intron | 45.0% | |
AACAACCTGGTTATGAGGCT+CGG | + | chr7_4:1448041-1448060 | None:intergenic | 45.0% | |
GTTTGGACCTGTTGTGTAAG+TGG | - | chr7_4:1448222-1448241 | Msa1134790:intron | 45.0% | |
! | AGTACTGCCACTTACACAAC+AGG | + | chr7_4:1448232-1448251 | None:intergenic | 45.0% |
GATGGAGAAGAGCCTAGAAA+TGG | + | chr7_4:1448313-1448332 | None:intergenic | 45.0% | |
CTAAGAACTCTGTCTTGGTC+TGG | + | chr7_4:1448335-1448354 | None:intergenic | 45.0% | |
CCACAAAGCTTATAGCAGTC+TGG | + | chr7_4:1448389-1448408 | None:intergenic | 45.0% | |
CCAGACTGCTATAAGCTTTG+TGG | - | chr7_4:1448386-1448405 | Msa1134790:intron | 45.0% | |
AAATCCTGGACTGATCCCTT+AGG | + | chr7_4:1448729-1448748 | None:intergenic | 45.0% | |
! | GGGATCAGTCCAGGATTTTT+AGG | - | chr7_4:1448731-1448750 | Msa1134790:intron | 45.0% |
ATGTGCAGGTACATGCAAGT+TGG | - | chr7_4:1448916-1448935 | Msa1134790:CDS | 45.0% | |
CTAATGTGTATCCAAGGGCA+AGG | + | chr7_4:1448966-1448985 | None:intergenic | 45.0% | |
CTTGCCCTTGGATACACATT+AGG | - | chr7_4:1448964-1448983 | Msa1134790:CDS | 45.0% | |
!! | ATTCTAGGACTCTCCGATGA+CGG | - | chr7_4:1448994-1449013 | Msa1134790:CDS | 45.0% |
!! | TTAAAGGGGAGCGTTGTCAA+AGG | + | chr7_4:1449021-1449040 | None:intergenic | 45.0% |
! | TCGTTCTTAGTGTACCGGTG+AGG | + | chr7_4:1443376-1443395 | None:intergenic | 50.0% |
! | TTTTGCCTGGCCGGAAATCA+TGG | - | chr7_4:1444105-1444124 | Msa1134790:intron | 50.0% |
TTTGCCTGGCCGGAAATCAT+GGG | - | chr7_4:1444106-1444125 | Msa1134790:intron | 50.0% | |
! | CGATTGGTTCCCGAATGATG+TGG | + | chr7_4:1444205-1444224 | None:intergenic | 50.0% |
TTAGGGGGAGGAAGGAAAAG+AGG | - | chr7_4:1444458-1444477 | Msa1134790:intron | 50.0% | |
GTGCAGGTGATTAAGGACCA+TGG | - | chr7_4:1444660-1444679 | Msa1134790:intron | 50.0% | |
! | TAGGCCTGAGTGGACTTTAC+TGG | - | chr7_4:1445186-1445205 | Msa1134790:CDS | 50.0% |
TGCTCCAAAGCAAAGACCAG+TGG | + | chr7_4:1445239-1445258 | None:intergenic | 50.0% | |
GGGCTCCCATGTATCATAAC+TGG | + | chr7_4:1445917-1445936 | None:intergenic | 50.0% | |
TGATACATGGGAGCCCATTG+AGG | - | chr7_4:1445921-1445940 | Msa1134790:CDS | 50.0% | |
GATACATGGGAGCCCATTGA+GGG | - | chr7_4:1445922-1445941 | Msa1134790:CDS | 50.0% | |
GTGGTGAGACTTACAGGAAG+AGG | + | chr7_4:1446132-1446151 | None:intergenic | 50.0% | |
TGAGGAGTGGTGAGACTTAC+AGG | + | chr7_4:1446138-1446157 | None:intergenic | 50.0% | |
CCACTAACACCTTGACAAGG+TGG | + | chr7_4:1446284-1446303 | None:intergenic | 50.0% | |
! | CCACCTTGTCAAGGTGTTAG+TGG | - | chr7_4:1446281-1446300 | Msa1134790:intron | 50.0% |
!! | TTTCTGGGGCGTTATGCTGT+AGG | - | chr7_4:1446449-1446468 | Msa1134790:intron | 50.0% |
TTATGCTGTAGGCCGTCTAG+TGG | - | chr7_4:1446460-1446479 | Msa1134790:intron | 50.0% | |
TCAAGCTCGGATGGGAATGA+TGG | - | chr7_4:1446493-1446512 | Msa1134790:intron | 50.0% | |
ATGATGGCTGCAGGGTCATA+TGG | - | chr7_4:1446509-1446528 | Msa1134790:CDS | 50.0% | |
CACGCATCCGAAATTGAGGA+AGG | + | chr7_4:1446535-1446554 | None:intergenic | 50.0% | |
CTCAGTAGGGATGACTGATC+TGG | + | chr7_4:1446733-1446752 | None:intergenic | 50.0% | |
!! | TGAAAAGTGTCAGCTGGCCA+AGG | - | chr7_4:1446893-1446912 | Msa1134790:CDS | 50.0% |
! | CTGGCCAAGGCATTATACCT+TGG | - | chr7_4:1446906-1446925 | Msa1134790:intron | 50.0% |
! | GGCCAAGGCATTATACCTTG+GGG | - | chr7_4:1446908-1446927 | Msa1134790:intron | 50.0% |
GTCCCCAAGGTATAATGCCT+TGG | + | chr7_4:1446913-1446932 | None:intergenic | 50.0% | |
GATCATCAATTGCGTCCCCA+AGG | + | chr7_4:1446926-1446945 | None:intergenic | 50.0% | |
! | CGCAATTGATGATCTCCCAC+CGG | - | chr7_4:1446932-1446951 | Msa1134790:intron | 50.0% |
GACTCTCAAAGTGCACCAAG+TGG | - | chr7_4:1447482-1447501 | Msa1134790:intron | 50.0% | |
CTTTAACTAGCACACCCTCG+AGG | + | chr7_4:1447687-1447706 | None:intergenic | 50.0% | |
! | ACAGGCCATTTGGTCGACTT+TGG | - | chr7_4:1447981-1448000 | Msa1134790:intron | 50.0% |
! | GCCATTTGGTCGACTTTGGT+GGG | - | chr7_4:1447985-1448004 | Msa1134790:intron | 50.0% |
TCCCACCAAAGTCGACCAAA+TGG | + | chr7_4:1447989-1448008 | None:intergenic | 50.0% | |
GAGGGTAGCATAAGTGGCAT+TGG | + | chr7_4:1448096-1448115 | None:intergenic | 50.0% | |
CAATGGGAGGGTAGCATAAG+TGG | + | chr7_4:1448102-1448121 | None:intergenic | 50.0% | |
GAACTCTGTCTTGGTCTGGA+TGG | + | chr7_4:1448331-1448350 | None:intergenic | 50.0% | |
CGAGAGAATGCAAGGCTACA+AGG | - | chr7_4:1448359-1448378 | Msa1134790:intron | 50.0% | |
TTTGTGGCCCTGTCAAACAG+AGG | - | chr7_4:1448402-1448421 | Msa1134790:intron | 50.0% | |
CGTTGTCAAAGGACCGTCAT+CGG | + | chr7_4:1449010-1449029 | None:intergenic | 50.0% | |
!! | AAGGACGGGCTAGACAACTT+GGG | + | chr7_4:1449047-1449066 | None:intergenic | 50.0% |
!! | AAAGGACGGGCTAGACAACT+TGG | + | chr7_4:1449048-1449067 | None:intergenic | 50.0% |
TCCGACGATGCATGCTTCGT+CGG | - | chr7_4:1443313-1443332 | Msa1134790:CDS | 55.0% | |
TCCGACGAAGCATGCATCGT+CGG | + | chr7_4:1443317-1443336 | None:intergenic | 55.0% | |
TTGCCTGGCCGGAAATCATG+GGG | - | chr7_4:1444107-1444126 | Msa1134790:intron | 55.0% | |
ACCCACCACCCCATGATTTC+CGG | + | chr7_4:1444118-1444137 | None:intergenic | 55.0% | |
TGACTTGAAGAGATGGGCCG+TGG | - | chr7_4:1445374-1445393 | Msa1134790:CDS | 55.0% | |
GGATGGGAATGATGGCTGCA+GGG | - | chr7_4:1446501-1446520 | Msa1134790:CDS | 55.0% | |
GCAAACTTCAGGGACCTCGA+GGG | - | chr7_4:1447670-1447689 | Msa1134790:intron | 55.0% | |
! | GGCCATTTGGTCGACTTTGG+TGG | - | chr7_4:1447984-1448003 | Msa1134790:intron | 55.0% |
CTCGGCCCTTGTTACAACAG+TGG | + | chr7_4:1448023-1448042 | None:intergenic | 55.0% | |
CTCTCCTAAGGGATCAGTCC+AGG | - | chr7_4:1448722-1448741 | Msa1134790:intron | 55.0% | |
TATCCAAGGGCAAGGGCAAC+AGG | + | chr7_4:1448958-1448977 | None:intergenic | 55.0% | |
GCCGGAAATCATGGGGTGGT+GGG | - | chr7_4:1444114-1444133 | Msa1134790:intron | 60.0% | |
GGGTGTGGAGCTATGTCCAC+TGG | - | chr7_4:1445220-1445239 | Msa1134790:CDS | 60.0% | |
!! | TGTGGTGGGCCACCTTGTCA+AGG | - | chr7_4:1446272-1446291 | Msa1134790:intron | 60.0% |
CGGATGGGAATGATGGCTGC+AGG | - | chr7_4:1446500-1446519 | Msa1134790:CDS | 60.0% | |
GGCAAACTTCAGGGACCTCG+AGG | - | chr7_4:1447669-1447688 | Msa1134790:intron | 60.0% | |
AAGGGCCGAGCCTCATAACC+AGG | - | chr7_4:1448033-1448052 | Msa1134790:intron | 60.0% | |
GTTCCTGTTGCCCTTGCCCT+TGG | - | chr7_4:1448952-1448971 | Msa1134790:CDS | 60.0% | |
CCACCCCATGATTTCCGGCC+AGG | + | chr7_4:1444113-1444132 | None:intergenic | 65.0% | |
CCTGGCCGGAAATCATGGGG+TGG | - | chr7_4:1444110-1444129 | Msa1134790:intron | 65.0% | |
GGCCGGAAATCATGGGGTGG+TGG | - | chr7_4:1444113-1444132 | Msa1134790:intron | 65.0% | |
GGGAGCCCATTGAGGGCTTG+AGG | - | chr7_4:1445929-1445948 | Msa1134790:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_4 | gene | 1442973 | 1449325 | 1442973 | ID=Msa1134790;Name=Msa1134790 |
chr7_4 | mRNA | 1442973 | 1449325 | 1442973 | ID=Msa1134790-mRNA-1;Parent=Msa1134790;Name=Msa1134790-mRNA-1;_AED=0.15;_eAED=0.15;_QI=187|1|1|1|1|1|20|227|827 |
chr7_4 | exon | 1442973 | 1443374 | 1442973 | ID=Msa1134790-mRNA-1:exon:569;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1443875 | 1443978 | 1443875 | ID=Msa1134790-mRNA-1:exon:568;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1444244 | 1444313 | 1444244 | ID=Msa1134790-mRNA-1:exon:567;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1444405 | 1444448 | 1444405 | ID=Msa1134790-mRNA-1:exon:566;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1444530 | 1444631 | 1444530 | ID=Msa1134790-mRNA-1:exon:565;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1444718 | 1444836 | 1444718 | ID=Msa1134790-mRNA-1:exon:564;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1445157 | 1445244 | 1445157 | ID=Msa1134790-mRNA-1:exon:563;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1445345 | 1445431 | 1445345 | ID=Msa1134790-mRNA-1:exon:562;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1445540 | 1445608 | 1445540 | ID=Msa1134790-mRNA-1:exon:561;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1445715 | 1446044 | 1445715 | ID=Msa1134790-mRNA-1:exon:560;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1446161 | 1446227 | 1446161 | ID=Msa1134790-mRNA-1:exon:559;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1446348 | 1446406 | 1446348 | ID=Msa1134790-mRNA-1:exon:558;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1446499 | 1446735 | 1446499 | ID=Msa1134790-mRNA-1:exon:557;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1446849 | 1446914 | 1446849 | ID=Msa1134790-mRNA-1:exon:556;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1447013 | 1447224 | 1447013 | ID=Msa1134790-mRNA-1:exon:555;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1447329 | 1447419 | 1447329 | ID=Msa1134790-mRNA-1:exon:554;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1447513 | 1447632 | 1447513 | ID=Msa1134790-mRNA-1:exon:553;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1447729 | 1447836 | 1447729 | ID=Msa1134790-mRNA-1:exon:552;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1448630 | 1448729 | 1448630 | ID=Msa1134790-mRNA-1:exon:551;Parent=Msa1134790-mRNA-1 |
chr7_4 | exon | 1448903 | 1449325 | 1448903 | ID=Msa1134790-mRNA-1:exon:550;Parent=Msa1134790-mRNA-1 |
chr7_4 | five_prime_UTR | 1449139 | 1449325 | 1449139 | ID=Msa1134790-mRNA-1:five_prime_utr;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1448903 | 1449138 | 1448903 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1448630 | 1448729 | 1448630 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1447729 | 1447836 | 1447729 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1447513 | 1447632 | 1447513 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1447329 | 1447419 | 1447329 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1447013 | 1447224 | 1447013 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1446849 | 1446914 | 1446849 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1446499 | 1446735 | 1446499 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1446348 | 1446406 | 1446348 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1446161 | 1446227 | 1446161 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1445715 | 1446044 | 1445715 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1445540 | 1445608 | 1445540 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1445345 | 1445431 | 1445345 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1445157 | 1445244 | 1445157 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1444718 | 1444836 | 1444718 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1444530 | 1444631 | 1444530 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1444405 | 1444448 | 1444405 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1444244 | 1444313 | 1444244 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1443875 | 1443978 | 1443875 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | CDS | 1443200 | 1443374 | 1443200 | ID=Msa1134790-mRNA-1:cds;Parent=Msa1134790-mRNA-1 |
chr7_4 | three_prime_UTR | 1442973 | 1443199 | 1442973 | ID=Msa1134790-mRNA-1:three_prime_utr;Parent=Msa1134790-mRNA-1 |
Gene Sequence |
Protein sequence |