AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162880 MtrunA17_Chr7g0259151 99.296 142 1 0 1 142 1 142 1.80e-100 284
Msa1162880 MtrunA17_Chr7g0268831 85.211 142 21 0 1 142 1 142 9.57e-86 246
Msa1162880 MtrunA17_Chr7g0273351 88.060 134 16 0 9 142 6 139 3.99e-83 240
Msa1162880 MtrunA17_Chr7g0273331 88.060 134 16 0 9 142 62 195 6.66e-82 239
Msa1162880 MtrunA17_Chr7g0273341 77.778 135 19 2 8 142 44 167 4.27e-67 200
Msa1162880 MtrunA17_Chr2g0319191 80.328 122 20 1 13 130 3 124 5.44e-67 199
Msa1162880 MtrunA17_Chr2g0319181 81.818 121 14 2 13 127 3 121 2.97e-66 197
Msa1162880 MtrunA17_Chr7g0272611 76.271 118 28 0 12 129 16 133 6.49e-60 181
Msa1162880 MtrunA17_Chr2g0327951 79.439 107 22 0 21 127 58 164 3.84e-58 178
Msa1162880 MtrunA17_Chr4g0035621 80.189 106 21 0 22 127 24 129 7.96e-58 176
Msa1162880 MtrunA17_Chr4g0031041 79.439 107 22 0 21 127 17 123 9.66e-58 176
Msa1162880 MtrunA17_Chr4g0031001 79.245 106 22 0 22 127 24 129 2.29e-57 175
Msa1162880 MtrunA17_Chr4g0031651 79.245 106 22 0 22 127 24 129 2.58e-57 175
Msa1162880 MtrunA17_Chr2g0327931 79.245 106 22 0 22 127 23 128 3.16e-57 175
Msa1162880 MtrunA17_Chr8g0379311 79.245 106 22 0 22 127 24 129 4.03e-57 174
Msa1162880 MtrunA17_Chr4g0032301 79.245 106 22 0 22 127 24 129 4.36e-57 174
Msa1162880 MtrunA17_Chr6g0449661 65.421 107 28 2 22 127 85 183 1.11e-40 134
Msa1162880 MtrunA17_Chr3g0119971 65.094 106 28 2 23 127 81 178 4.28e-40 133
Msa1162880 MtrunA17_Chr1g0148961 61.682 107 39 2 21 126 25 130 2.73e-38 126
Msa1162880 MtrunA17_Chr1g0148951 61.682 107 39 2 21 126 25 130 2.73e-38 126
Msa1162880 MtrunA17_Chr1g0211651 54.688 128 55 3 1 126 1 127 1.14e-37 125
Msa1162880 MtrunA17_Chr1g0184901 55.469 128 44 4 11 126 4 130 7.12e-37 123
Msa1162880 MtrunA17_Chr4g0031031 77.027 74 17 0 43 116 10 83 5.61e-35 117
Msa1162880 MtrunA17_Chr4g0024701 49.533 107 34 2 22 128 26 112 1.60e-25 93.6
Msa1162880 MtrunA17_Chr4g0000531 81.250 48 9 0 83 130 5 52 1.43e-22 84.3
Msa1162880 MtrunA17_Chr1g0183701 57.143 63 27 0 65 127 30 92 6.63e-18 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162880 AT1G54690.1 85.211 142 21 0 1 142 1 142 1.90e-85 246
Msa1162880 AT1G08880.1 83.803 142 23 0 1 142 1 142 1.58e-84 244
Msa1162880 AT4G27230.2 79.839 124 21 1 13 132 3 126 7.93e-67 199
Msa1162880 AT4G27230.1 79.839 124 21 1 13 132 3 126 7.93e-67 199
Msa1162880 AT5G54640.1 79.032 124 22 1 13 132 3 126 2.99e-66 197
Msa1162880 AT3G20670.1 79.032 124 22 1 13 132 3 126 2.12e-65 195
Msa1162880 AT1G51060.1 77.419 124 24 1 13 132 3 126 2.48e-65 195
Msa1162880 AT5G59870.1 72.059 136 32 3 4 134 2 136 1.41e-61 186
Msa1162880 AT5G27670.1 73.600 125 29 1 7 127 6 130 6.78e-57 174
Msa1162880 AT5G02560.1 78.505 107 23 0 21 127 23 129 1.91e-56 173
Msa1162880 AT5G02560.2 64.122 131 23 1 21 127 23 153 1.56e-50 159
Msa1162880 AT2G38810.1 62.037 108 37 3 21 126 27 132 2.10e-37 124
Msa1162880 AT2G38810.4 62.037 108 37 3 21 126 27 132 2.10e-37 124
Msa1162880 AT2G38810.3 62.037 108 37 3 21 126 27 132 2.10e-37 124
Msa1162880 AT2G38810.2 62.037 108 37 3 21 126 27 132 2.10e-37 124
Msa1162880 AT1G52740.1 60.000 105 40 2 23 126 27 130 7.01e-37 123
Msa1162880 AT3G54560.1 60.377 106 38 3 23 126 29 132 4.80e-36 121
Msa1162880 AT3G54560.2 60.377 106 38 3 23 126 29 132 4.80e-36 121
Msa1162880 AT4G13570.1 50.538 93 42 3 30 120 28 118 1.07e-21 84.3
Msa1162880 AT4G13570.2 50.000 92 42 3 31 120 35 124 3.92e-21 82.8

Find 67 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAACGGACTTGGTGGTTT+TGG 0.182132 7_4:-53749288 None:intergenic
TTCTTTCCAGCCACCTTCTT+TGG 0.190245 7_4:-53749699 None:intergenic
TTTGCCCCTTCCACCTTTCT+TGG 0.205738 7_4:-53749264 None:intergenic
TGAAGCCATTGAACCTTTCT+TGG 0.217690 7_4:-53749225 None:intergenic
GCTGGAAAGAAGGGAGAAAT+TGG 0.339055 7_4:+53749711 Msa1162880:CDS
CCTTCTTTGGCAACAAAGTC+TGG 0.341613 7_4:-53749686 None:intergenic
TGTTGGATCGTTAAAATGTT+AGG 0.342558 7_4:+53749776 Msa1162880:three_prime_UTR
TAGGGGTTTAATGTAGCATT+TGG 0.358115 7_4:+53749753 Msa1162880:exon
CGATGCGGCCAACGGGGAAC+TGG 0.364040 7_4:-53749331 None:intergenic
ACATCAAAGTACACTCTCTT+TGG 0.365869 7_4:-53748906 None:intergenic
AGAACGGCGGAGAGGTAAAC+AGG 0.367840 7_4:-53749404 None:intergenic
AACAAAGTCTGGTGAATGTT+AGG 0.388717 7_4:-53749675 None:intergenic
TATTCTCAACGTGTTGGATC+TGG 0.390278 7_4:+53749377 Msa1162880:CDS
GCTTGATCTGGAAACGGACT+TGG 0.398049 7_4:-53749297 None:intergenic
TGAAGAATTGAGCAAATTGT+TGG 0.398697 7_4:+53749620 Msa1162880:CDS
AAGCGAGCGATGCGGCCAAC+GGG 0.403212 7_4:-53749338 None:intergenic
GAGAATAACGACCTGCTTTG+AGG 0.406903 7_4:-53749361 None:intergenic
CCAGACTTTGTTGCCAAAGA+AGG 0.415982 7_4:+53749686 Msa1162880:CDS
ATTTCGTTCTTGATTCTGAT+TGG 0.417265 7_4:-53749125 None:intergenic
TTCAACCAAGAAAGGTTCAA+TGG 0.427598 7_4:+53749220 Msa1162880:exon
AATTCAATTTCAACCAAGAA+AGG 0.427612 7_4:+53749212 Msa1162880:five_prime_UTR
GGCTTTGCTTGATCTGGAAA+CGG 0.440381 7_4:-53749303 None:intergenic
GAGACCGGCTTTGCTTGATC+TGG 0.448607 7_4:-53749309 None:intergenic
AAGTTTAATTGAGTTGGCTT+TGG 0.455144 7_4:-53749159 None:intergenic
CGTTCCTCACAGCTAGTTGA+AGG 0.456555 7_4:-53749596 None:intergenic
TTTAATGTAGCATTTGGTGT+TGG 0.463658 7_4:+53749759 Msa1162880:three_prime_UTR
AAAGAAGGTGGCTGGAAAGA+AGG 0.474142 7_4:+53749701 Msa1162880:CDS
GATTAGGTTAGGATTAATGT+TGG 0.482420 7_4:+53749853 Msa1162880:three_prime_UTR
TTGTTGCCAAAGAAGGTGGC+TGG 0.488184 7_4:+53749693 Msa1162880:CDS
AGAAATTGGATCTGTTAGTC+AGG 0.492158 7_4:+53749725 Msa1162880:CDS
ATCGCTCGCTTCCTCAAAGC+AGG 0.500822 7_4:+53749350 Msa1162880:CDS
GAAGAATTGAGCAAATTGTT+GGG 0.504162 7_4:+53749621 Msa1162880:CDS
GTTGTGAAGTTTAATTGAGT+TGG 0.512047 7_4:-53749165 None:intergenic
TGATTCTGATTGGCTTAGAG+AGG 0.517754 7_4:-53749115 None:intergenic
TGATCTGGAAACGGACTTGG+TGG 0.521894 7_4:-53749294 None:intergenic
CACGCCAGCGAAACTTGAAA+AGG 0.523341 7_4:+53749017 Msa1162880:five_prime_UTR
GCCAACGGGGAACTGGAGAC+CGG 0.528668 7_4:-53749324 None:intergenic
GAAGCGAGCGATGCGGCCAA+CGG 0.540733 7_4:-53749339 None:intergenic
ACAGCTAGTTGAAGGTGCCT+TGG 0.544219 7_4:-53749588 None:intergenic
GCAACTGCAACAACCAAGAA+AGG 0.557316 7_4:+53749251 Msa1162880:CDS
GGTCGTTATTCTCAACGTGT+TGG 0.559902 7_4:+53749371 Msa1162880:CDS
GGACATGTGACTATTGCTAA+TGG 0.560318 7_4:+53749642 Msa1162880:CDS
GACTTTGTTGCCAAAGAAGG+TGG 0.566455 7_4:+53749689 Msa1162880:CDS
AAGAAGGTGGCTGGAAAGAA+GGG 0.567889 7_4:+53749702 Msa1162880:CDS
GCCGGTCTCCAGTTCCCCGT+TGG 0.568530 7_4:+53749323 Msa1162880:CDS
CAACAACCAAGAAAGGTGGA+AGG 0.573749 7_4:+53749258 Msa1162880:CDS
GTTTCCAGATCAAGCAAAGC+CGG 0.580006 7_4:+53749305 Msa1162880:CDS
ACAACCAAGAAAGGTGGAAG+GGG 0.581051 7_4:+53749260 Msa1162880:CDS
AACAACCAAGAAAGGTGGAA+GGG 0.595913 7_4:+53749259 Msa1162880:CDS
GGCGCAGAGGTATTCAAGAA+CGG 0.601101 7_4:-53749420 None:intergenic
CAAGGGATAACAAGAAGACA+AGG 0.618509 7_4:+53749559 Msa1162880:CDS
AATTGGCTGGTAATGCTGCA+AGG 0.630027 7_4:+53749541 Msa1162880:CDS
AGCGAGCGATGCGGCCAACG+GGG 0.630212 7_4:-53749337 None:intergenic
TGTTTATACTAGCAATAGAG+AGG 0.630482 7_4:+53748926 Msa1162880:five_prime_UTR
ATTGGCTGGTAATGCTGCAA+GGG 0.637236 7_4:+53749542 Msa1162880:CDS
ACTGCAACAACCAAGAAAGG+TGG 0.654549 7_4:+53749254 Msa1162880:CDS
CTTTGAGGAAGCGAGCGATG+CGG 0.656929 7_4:-53749346 None:intergenic
TCTTGAATACCTCTGCGCCG+AGG 0.661590 7_4:+53749424 Msa1162880:CDS
CATGTGACTATTGCTAATGG+TGG 0.673088 7_4:+53749645 Msa1162880:CDS
GAACGGCGGAGAGGTAAACA+GGG 0.687773 7_4:-53749403 None:intergenic
GGTATTCAAGAACGGCGGAG+AGG 0.689904 7_4:-53749412 None:intergenic
GGCACCTTCAACTAGCTGTG+AGG 0.707498 7_4:+53749592 Msa1162880:CDS
AGAAGACAAGGATTGTACCA+AGG 0.714311 7_4:+53749571 Msa1162880:CDS
TGGCTTAGAGAGGTTTCACG+CGG 0.717037 7_4:-53749105 None:intergenic
TTTCACGCGGATCGCCAACG+TGG 0.727732 7_4:-53749092 None:intergenic
GCAGAGGTATTCAAGAACGG+CGG 0.737402 7_4:-53749417 None:intergenic
AACGGCGGAGAGGTAAACAG+GGG 0.752615 7_4:-53749402 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACCGTTTATATTAATTTT+TGG + chr7_4:53749503-53749522 Msa1162880:intron 15.0%
!!! AACCGTTTATATTAATTTTT+GGG + chr7_4:53749504-53749523 Msa1162880:intron 15.0%
!!! TAACCGTTTATATTAATTTT+TGG + chr7_4:53749503-53749522 Msa1162880:intron 15.0%
!!! AACCGTTTATATTAATTTTT+GGG + chr7_4:53749504-53749523 Msa1162880:intron 15.0%
!! CACCCAAAAATTAATATAAA+CGG - chr7_4:53749509-53749528 None:intergenic 20.0%
!! CACCCAAAAATTAATATAAA+CGG - chr7_4:53749509-53749528 None:intergenic 20.0%
! AATTCAATTTCAACCAAGAA+AGG + chr7_4:53749212-53749231 Msa1162880:five_prime_UTR 25.0%
! AAAGCAAAGAAAAATTACCT+CGG - chr7_4:53749444-53749463 None:intergenic 25.0%
!!! CGTTTATATTAATTTTTGGG+TGG + chr7_4:53749507-53749526 Msa1162880:intron 25.0%
!!! ATATTAATTTTTGGGTGGTT+AGG + chr7_4:53749512-53749531 Msa1162880:intron 25.0%
!!! TCTTATTTTGAGATTAGGTT+AGG + chr7_4:53749842-53749861 Msa1162880:three_prime_UTR 25.0%
! AATTCAATTTCAACCAAGAA+AGG + chr7_4:53749212-53749231 Msa1162880:five_prime_UTR 25.0%
! AAAGCAAAGAAAAATTACCT+CGG - chr7_4:53749444-53749463 None:intergenic 25.0%
!!! CGTTTATATTAATTTTTGGG+TGG + chr7_4:53749507-53749526 Msa1162880:intron 25.0%
!!! ATATTAATTTTTGGGTGGTT+AGG + chr7_4:53749512-53749531 Msa1162880:intron 25.0%
!!! TCTTATTTTGAGATTAGGTT+AGG + chr7_4:53749842-53749861 Msa1162880:three_prime_UTR 25.0%
TGTTTATACTAGCAATAGAG+AGG + chr7_4:53748926-53748945 Msa1162880:five_prime_UTR 30.0%
!!! AAACAAGTTTGAGTTTTGAG+CGG - chr7_4:53749065-53749084 None:intergenic 30.0%
!!! CAAAACTCAAACTTGTTTTG+CGG + chr7_4:53749067-53749086 Msa1162880:five_prime_UTR 30.0%
ATTTCGTTCTTGATTCTGAT+TGG - chr7_4:53749128-53749147 None:intergenic 30.0%
!! AAGTTTAATTGAGTTGGCTT+TGG - chr7_4:53749162-53749181 None:intergenic 30.0%
GTTGTGAAGTTTAATTGAGT+TGG - chr7_4:53749168-53749187 None:intergenic 30.0%
TGAAGAATTGAGCAAATTGT+TGG + chr7_4:53749620-53749639 Msa1162880:CDS 30.0%
GAAGAATTGAGCAAATTGTT+GGG + chr7_4:53749621-53749640 Msa1162880:CDS 30.0%
!! TTTAATGTAGCATTTGGTGT+TGG + chr7_4:53749759-53749778 Msa1162880:three_prime_UTR 30.0%
TGTTGGATCGTTAAAATGTT+AGG + chr7_4:53749776-53749795 Msa1162880:three_prime_UTR 30.0%
!!! CGTGTTCTTATTTTGAGATT+AGG + chr7_4:53749837-53749856 Msa1162880:three_prime_UTR 30.0%
GATTAGGTTAGGATTAATGT+TGG + chr7_4:53749853-53749872 Msa1162880:three_prime_UTR 30.0%
TGTTTATACTAGCAATAGAG+AGG + chr7_4:53748926-53748945 Msa1162880:five_prime_UTR 30.0%
!!! AAACAAGTTTGAGTTTTGAG+CGG - chr7_4:53749065-53749084 None:intergenic 30.0%
!!! CAAAACTCAAACTTGTTTTG+CGG + chr7_4:53749067-53749086 Msa1162880:five_prime_UTR 30.0%
ATTTCGTTCTTGATTCTGAT+TGG - chr7_4:53749128-53749147 None:intergenic 30.0%
!! AAGTTTAATTGAGTTGGCTT+TGG - chr7_4:53749162-53749181 None:intergenic 30.0%
GTTGTGAAGTTTAATTGAGT+TGG - chr7_4:53749168-53749187 None:intergenic 30.0%
TGAAGAATTGAGCAAATTGT+TGG + chr7_4:53749620-53749639 Msa1162880:CDS 30.0%
GAAGAATTGAGCAAATTGTT+GGG + chr7_4:53749621-53749640 Msa1162880:CDS 30.0%
!! TTTAATGTAGCATTTGGTGT+TGG + chr7_4:53749759-53749778 Msa1162880:three_prime_UTR 30.0%
TGTTGGATCGTTAAAATGTT+AGG + chr7_4:53749776-53749795 Msa1162880:three_prime_UTR 30.0%
!!! CGTGTTCTTATTTTGAGATT+AGG + chr7_4:53749837-53749856 Msa1162880:three_prime_UTR 30.0%
GATTAGGTTAGGATTAATGT+TGG + chr7_4:53749853-53749872 Msa1162880:three_prime_UTR 30.0%
ACATCAAAGTACACTCTCTT+TGG - chr7_4:53748909-53748928 None:intergenic 35.0%
!!! AACAAGTTTGAGTTTTGAGC+GGG - chr7_4:53749064-53749083 None:intergenic 35.0%
TTCAACCAAGAAAGGTTCAA+TGG + chr7_4:53749220-53749239 Msa1162880:exon 35.0%
CAAACTCAAAATAACACTCG+AGG - chr7_4:53749470-53749489 None:intergenic 35.0%
!!! ATTTTTGGGTGGTTAGGTTT+TGG + chr7_4:53749518-53749537 Msa1162880:intron 35.0%
AACAAAGTCTGGTGAATGTT+AGG - chr7_4:53749678-53749697 None:intergenic 35.0%
AGAAATTGGATCTGTTAGTC+AGG + chr7_4:53749725-53749744 Msa1162880:CDS 35.0%
! ATCTGTTAGTCAGGAGTTTT+AGG + chr7_4:53749734-53749753 Msa1162880:CDS 35.0%
! TCTGTTAGTCAGGAGTTTTA+GGG + chr7_4:53749735-53749754 Msa1162880:CDS 35.0%
TAGGGGTTTAATGTAGCATT+TGG + chr7_4:53749753-53749772 Msa1162880:exon 35.0%
ACATCAAAGTACACTCTCTT+TGG - chr7_4:53748909-53748928 None:intergenic 35.0%
!!! AACAAGTTTGAGTTTTGAGC+GGG - chr7_4:53749064-53749083 None:intergenic 35.0%
TTCAACCAAGAAAGGTTCAA+TGG + chr7_4:53749220-53749239 Msa1162880:exon 35.0%
CAAACTCAAAATAACACTCG+AGG - chr7_4:53749470-53749489 None:intergenic 35.0%
!!! ATTTTTGGGTGGTTAGGTTT+TGG + chr7_4:53749518-53749537 Msa1162880:intron 35.0%
AACAAAGTCTGGTGAATGTT+AGG - chr7_4:53749678-53749697 None:intergenic 35.0%
AGAAATTGGATCTGTTAGTC+AGG + chr7_4:53749725-53749744 Msa1162880:CDS 35.0%
! ATCTGTTAGTCAGGAGTTTT+AGG + chr7_4:53749734-53749753 Msa1162880:CDS 35.0%
! TCTGTTAGTCAGGAGTTTTA+GGG + chr7_4:53749735-53749754 Msa1162880:CDS 35.0%
TAGGGGTTTAATGTAGCATT+TGG + chr7_4:53749753-53749772 Msa1162880:exon 35.0%
!! TTTTGATTGCCGCTCAAAAG+CGG + chr7_4:53748960-53748979 Msa1162880:five_prime_UTR 40.0%
!! TGATTCTGATTGGCTTAGAG+AGG - chr7_4:53749118-53749137 None:intergenic 40.0%
TGAAGCCATTGAACCTTTCT+TGG - chr7_4:53749228-53749247 None:intergenic 40.0%
AACAACCAAGAAAGGTGGAA+GGG + chr7_4:53749259-53749278 Msa1162880:CDS 40.0%
TATTCTCAACGTGTTGGATC+TGG + chr7_4:53749377-53749396 Msa1162880:CDS 40.0%
CAAGGGATAACAAGAAGACA+AGG + chr7_4:53749559-53749578 Msa1162880:CDS 40.0%
AGAAGACAAGGATTGTACCA+AGG + chr7_4:53749571-53749590 Msa1162880:CDS 40.0%
GGACATGTGACTATTGCTAA+TGG + chr7_4:53749642-53749661 Msa1162880:CDS 40.0%
CATGTGACTATTGCTAATGG+TGG + chr7_4:53749645-53749664 Msa1162880:CDS 40.0%
!! CTGTTAGTCAGGAGTTTTAG+GGG + chr7_4:53749736-53749755 Msa1162880:CDS 40.0%
!! TTTTGATTGCCGCTCAAAAG+CGG + chr7_4:53748960-53748979 Msa1162880:five_prime_UTR 40.0%
!! TGATTCTGATTGGCTTAGAG+AGG - chr7_4:53749118-53749137 None:intergenic 40.0%
TGAAGCCATTGAACCTTTCT+TGG - chr7_4:53749228-53749247 None:intergenic 40.0%
AACAACCAAGAAAGGTGGAA+GGG + chr7_4:53749259-53749278 Msa1162880:CDS 40.0%
TATTCTCAACGTGTTGGATC+TGG + chr7_4:53749377-53749396 Msa1162880:CDS 40.0%
CAAGGGATAACAAGAAGACA+AGG + chr7_4:53749559-53749578 Msa1162880:CDS 40.0%
AGAAGACAAGGATTGTACCA+AGG + chr7_4:53749571-53749590 Msa1162880:CDS 40.0%
GGACATGTGACTATTGCTAA+TGG + chr7_4:53749642-53749661 Msa1162880:CDS 40.0%
CATGTGACTATTGCTAATGG+TGG + chr7_4:53749645-53749664 Msa1162880:CDS 40.0%
!! CTGTTAGTCAGGAGTTTTAG+GGG + chr7_4:53749736-53749755 Msa1162880:CDS 40.0%
!! TTCGTGAATCCGCTTTTGAG+CGG - chr7_4:53748972-53748991 None:intergenic 45.0%
GCAACTGCAACAACCAAGAA+AGG + chr7_4:53749251-53749270 Msa1162880:CDS 45.0%
ACTGCAACAACCAAGAAAGG+TGG + chr7_4:53749254-53749273 Msa1162880:CDS 45.0%
CAACAACCAAGAAAGGTGGA+AGG + chr7_4:53749258-53749277 Msa1162880:CDS 45.0%
ACAACCAAGAAAGGTGGAAG+GGG + chr7_4:53749260-53749279 Msa1162880:CDS 45.0%
!!! GAAACGGACTTGGTGGTTTT+GGG - chr7_4:53749290-53749309 None:intergenic 45.0%
GGCTTTGCTTGATCTGGAAA+CGG - chr7_4:53749306-53749325 None:intergenic 45.0%
GTTTCCAGATCAAGCAAAGC+CGG + chr7_4:53749305-53749324 Msa1162880:CDS 45.0%
GAGAATAACGACCTGCTTTG+AGG - chr7_4:53749364-53749383 None:intergenic 45.0%
GGTCGTTATTCTCAACGTGT+TGG + chr7_4:53749371-53749390 Msa1162880:CDS 45.0%
!!! GGGTGGTTAGGTTTTGGAAT+TGG + chr7_4:53749524-53749543 Msa1162880:intron 45.0%
!!! GGTTAGGTTTTGGAATTGGC+TGG + chr7_4:53749528-53749547 Msa1162880:intron 45.0%
! AATTGGCTGGTAATGCTGCA+AGG + chr7_4:53749541-53749560 Msa1162880:CDS 45.0%
! ATTGGCTGGTAATGCTGCAA+GGG + chr7_4:53749542-53749561 Msa1162880:CDS 45.0%
CCTTCTTTGGCAACAAAGTC+TGG - chr7_4:53749689-53749708 None:intergenic 45.0%
CCAGACTTTGTTGCCAAAGA+AGG + chr7_4:53749686-53749705 Msa1162880:CDS 45.0%
GACTTTGTTGCCAAAGAAGG+TGG + chr7_4:53749689-53749708 Msa1162880:CDS 45.0%
TTCTTTCCAGCCACCTTCTT+TGG - chr7_4:53749702-53749721 None:intergenic 45.0%
AAAGAAGGTGGCTGGAAAGA+AGG + chr7_4:53749701-53749720 Msa1162880:CDS 45.0%
AAGAAGGTGGCTGGAAAGAA+GGG + chr7_4:53749702-53749721 Msa1162880:CDS 45.0%
GCTGGAAAGAAGGGAGAAAT+TGG + chr7_4:53749711-53749730 Msa1162880:CDS 45.0%
!! TTCGTGAATCCGCTTTTGAG+CGG - chr7_4:53748972-53748991 None:intergenic 45.0%
GCAACTGCAACAACCAAGAA+AGG + chr7_4:53749251-53749270 Msa1162880:CDS 45.0%
ACTGCAACAACCAAGAAAGG+TGG + chr7_4:53749254-53749273 Msa1162880:CDS 45.0%
CAACAACCAAGAAAGGTGGA+AGG + chr7_4:53749258-53749277 Msa1162880:CDS 45.0%
ACAACCAAGAAAGGTGGAAG+GGG + chr7_4:53749260-53749279 Msa1162880:CDS 45.0%
!!! GAAACGGACTTGGTGGTTTT+GGG - chr7_4:53749290-53749309 None:intergenic 45.0%
GGCTTTGCTTGATCTGGAAA+CGG - chr7_4:53749306-53749325 None:intergenic 45.0%
GTTTCCAGATCAAGCAAAGC+CGG + chr7_4:53749305-53749324 Msa1162880:CDS 45.0%
GAGAATAACGACCTGCTTTG+AGG - chr7_4:53749364-53749383 None:intergenic 45.0%
GGTCGTTATTCTCAACGTGT+TGG + chr7_4:53749371-53749390 Msa1162880:CDS 45.0%
!!! GGGTGGTTAGGTTTTGGAAT+TGG + chr7_4:53749524-53749543 Msa1162880:intron 45.0%
!!! GGTTAGGTTTTGGAATTGGC+TGG + chr7_4:53749528-53749547 Msa1162880:intron 45.0%
! AATTGGCTGGTAATGCTGCA+AGG + chr7_4:53749541-53749560 Msa1162880:CDS 45.0%
! ATTGGCTGGTAATGCTGCAA+GGG + chr7_4:53749542-53749561 Msa1162880:CDS 45.0%
CCTTCTTTGGCAACAAAGTC+TGG - chr7_4:53749689-53749708 None:intergenic 45.0%
CCAGACTTTGTTGCCAAAGA+AGG + chr7_4:53749686-53749705 Msa1162880:CDS 45.0%
GACTTTGTTGCCAAAGAAGG+TGG + chr7_4:53749689-53749708 Msa1162880:CDS 45.0%
TTCTTTCCAGCCACCTTCTT+TGG - chr7_4:53749702-53749721 None:intergenic 45.0%
AAAGAAGGTGGCTGGAAAGA+AGG + chr7_4:53749701-53749720 Msa1162880:CDS 45.0%
AAGAAGGTGGCTGGAAAGAA+GGG + chr7_4:53749702-53749721 Msa1162880:CDS 45.0%
GCTGGAAAGAAGGGAGAAAT+TGG + chr7_4:53749711-53749730 Msa1162880:CDS 45.0%
!!! CTTTTCAAGTTTCGCTGGCG+TGG - chr7_4:53749019-53749038 None:intergenic 50.0%
CACGCCAGCGAAACTTGAAA+AGG + chr7_4:53749017-53749036 Msa1162880:five_prime_UTR 50.0%
!!! CACGCCTTTTCAAGTTTCGC+TGG - chr7_4:53749024-53749043 None:intergenic 50.0%
TGGCTTAGAGAGGTTTCACG+CGG - chr7_4:53749108-53749127 None:intergenic 50.0%
TTTGCCCCTTCCACCTTTCT+TGG - chr7_4:53749267-53749286 None:intergenic 50.0%
!!! GGAAACGGACTTGGTGGTTT+TGG - chr7_4:53749291-53749310 None:intergenic 50.0%
! TGATCTGGAAACGGACTTGG+TGG - chr7_4:53749297-53749316 None:intergenic 50.0%
! GCTTGATCTGGAAACGGACT+TGG - chr7_4:53749300-53749319 None:intergenic 50.0%
!! GCAGAGGTATTCAAGAACGG+CGG - chr7_4:53749420-53749439 None:intergenic 50.0%
!! GGCGCAGAGGTATTCAAGAA+CGG - chr7_4:53749423-53749442 None:intergenic 50.0%
GAAAAATTACCTCGGCGCAG+AGG - chr7_4:53749436-53749455 None:intergenic 50.0%
!! ACAGCTAGTTGAAGGTGCCT+TGG - chr7_4:53749591-53749610 None:intergenic 50.0%
CGTTCCTCACAGCTAGTTGA+AGG - chr7_4:53749599-53749618 None:intergenic 50.0%
TTGTTGCCAAAGAAGGTGGC+TGG + chr7_4:53749693-53749712 Msa1162880:CDS 50.0%
!!! CTTTTCAAGTTTCGCTGGCG+TGG - chr7_4:53749019-53749038 None:intergenic 50.0%
CACGCCAGCGAAACTTGAAA+AGG + chr7_4:53749017-53749036 Msa1162880:five_prime_UTR 50.0%
!!! CACGCCTTTTCAAGTTTCGC+TGG - chr7_4:53749024-53749043 None:intergenic 50.0%
TGGCTTAGAGAGGTTTCACG+CGG - chr7_4:53749108-53749127 None:intergenic 50.0%
TTTGCCCCTTCCACCTTTCT+TGG - chr7_4:53749267-53749286 None:intergenic 50.0%
!!! GGAAACGGACTTGGTGGTTT+TGG - chr7_4:53749291-53749310 None:intergenic 50.0%
! TGATCTGGAAACGGACTTGG+TGG - chr7_4:53749297-53749316 None:intergenic 50.0%
! GCTTGATCTGGAAACGGACT+TGG - chr7_4:53749300-53749319 None:intergenic 50.0%
!! GCAGAGGTATTCAAGAACGG+CGG - chr7_4:53749420-53749439 None:intergenic 50.0%
!! GGCGCAGAGGTATTCAAGAA+CGG - chr7_4:53749423-53749442 None:intergenic 50.0%
GAAAAATTACCTCGGCGCAG+AGG - chr7_4:53749436-53749455 None:intergenic 50.0%
!! ACAGCTAGTTGAAGGTGCCT+TGG - chr7_4:53749591-53749610 None:intergenic 50.0%
CGTTCCTCACAGCTAGTTGA+AGG - chr7_4:53749599-53749618 None:intergenic 50.0%
TTGTTGCCAAAGAAGGTGGC+TGG + chr7_4:53749693-53749712 Msa1162880:CDS 50.0%
!!! CTTGTTTTGCGGTGCCACGT+TGG + chr7_4:53749078-53749097 Msa1162880:five_prime_UTR 55.0%
! GAGACCGGCTTTGCTTGATC+TGG - chr7_4:53749312-53749331 None:intergenic 55.0%
! CTTTGAGGAAGCGAGCGATG+CGG - chr7_4:53749349-53749368 None:intergenic 55.0%
ATCGCTCGCTTCCTCAAAGC+AGG + chr7_4:53749350-53749369 Msa1162880:CDS 55.0%
AACGGCGGAGAGGTAAACAG+GGG - chr7_4:53749405-53749424 None:intergenic 55.0%
GAACGGCGGAGAGGTAAACA+GGG - chr7_4:53749406-53749425 None:intergenic 55.0%
AGAACGGCGGAGAGGTAAAC+AGG - chr7_4:53749407-53749426 None:intergenic 55.0%
GGTATTCAAGAACGGCGGAG+AGG - chr7_4:53749415-53749434 None:intergenic 55.0%
TCTTGAATACCTCTGCGCCG+AGG + chr7_4:53749424-53749443 Msa1162880:CDS 55.0%
GGCACCTTCAACTAGCTGTG+AGG + chr7_4:53749592-53749611 Msa1162880:CDS 55.0%
!!! CTTGTTTTGCGGTGCCACGT+TGG + chr7_4:53749078-53749097 Msa1162880:five_prime_UTR 55.0%
! GAGACCGGCTTTGCTTGATC+TGG - chr7_4:53749312-53749331 None:intergenic 55.0%
! CTTTGAGGAAGCGAGCGATG+CGG - chr7_4:53749349-53749368 None:intergenic 55.0%
ATCGCTCGCTTCCTCAAAGC+AGG + chr7_4:53749350-53749369 Msa1162880:CDS 55.0%
AACGGCGGAGAGGTAAACAG+GGG - chr7_4:53749405-53749424 None:intergenic 55.0%
GAACGGCGGAGAGGTAAACA+GGG - chr7_4:53749406-53749425 None:intergenic 55.0%
AGAACGGCGGAGAGGTAAAC+AGG - chr7_4:53749407-53749426 None:intergenic 55.0%
GGTATTCAAGAACGGCGGAG+AGG - chr7_4:53749415-53749434 None:intergenic 55.0%
TCTTGAATACCTCTGCGCCG+AGG + chr7_4:53749424-53749443 Msa1162880:CDS 55.0%
GGCACCTTCAACTAGCTGTG+AGG + chr7_4:53749592-53749611 Msa1162880:CDS 55.0%
TTTCACGCGGATCGCCAACG+TGG - chr7_4:53749095-53749114 None:intergenic 60.0%
TTTCACGCGGATCGCCAACG+TGG - chr7_4:53749095-53749114 None:intergenic 60.0%
GCCAACGGGGAACTGGAGAC+CGG - chr7_4:53749327-53749346 None:intergenic 65.0%
AAGCGAGCGATGCGGCCAAC+GGG - chr7_4:53749341-53749360 None:intergenic 65.0%
GAAGCGAGCGATGCGGCCAA+CGG - chr7_4:53749342-53749361 None:intergenic 65.0%
GCCAACGGGGAACTGGAGAC+CGG - chr7_4:53749327-53749346 None:intergenic 65.0%
AAGCGAGCGATGCGGCCAAC+GGG - chr7_4:53749341-53749360 None:intergenic 65.0%
GAAGCGAGCGATGCGGCCAA+CGG - chr7_4:53749342-53749361 None:intergenic 65.0%
GCCGGTCTCCAGTTCCCCGT+TGG + chr7_4:53749323-53749342 Msa1162880:CDS 70.0%
CGATGCGGCCAACGGGGAAC+TGG - chr7_4:53749334-53749353 None:intergenic 70.0%
AGCGAGCGATGCGGCCAACG+GGG - chr7_4:53749340-53749359 None:intergenic 70.0%
GCCGGTCTCCAGTTCCCCGT+TGG + chr7_4:53749323-53749342 Msa1162880:CDS 70.0%
CGATGCGGCCAACGGGGAAC+TGG - chr7_4:53749334-53749353 None:intergenic 70.0%
AGCGAGCGATGCGGCCAACG+GGG - chr7_4:53749340-53749359 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 53748731 53749937 53748731 ID=Msa1162880;Name=Msa1162880
chr7_4 mRNA 53748731 53749937 53748731 ID=Msa1162880-mRNA-1;Parent=Msa1162880;Name=Msa1162880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=508|1|1|1|1|1|2|182|142
chr7_4 exon 53748731 53749445 53748731 ID=Msa1162880-mRNA-1:exon:15556;Parent=Msa1162880-mRNA-1
chr7_4 exon 53749534 53749937 53749534 ID=Msa1162880-mRNA-1:exon:15557;Parent=Msa1162880-mRNA-1
chr7_4 five_prime_UTR 53748731 53749238 53748731 ID=Msa1162880-mRNA-1:five_prime_utr;Parent=Msa1162880-mRNA-1
chr7_4 CDS 53749239 53749445 53749239 ID=Msa1162880-mRNA-1:cds;Parent=Msa1162880-mRNA-1
chr7_4 CDS 53749534 53749755 53749534 ID=Msa1162880-mRNA-1:cds;Parent=Msa1162880-mRNA-1
chr7_4 three_prime_UTR 53749756 53749937 53749756 ID=Msa1162880-mRNA-1:three_prime_utr;Parent=Msa1162880-mRNA-1
Gene Sequence

>Msa1162880

ATGGCTTCAGATGCAACTGCAACAACCAAGAAAGGTGGAAGGGGCAAACCCAAAACCACCAAGTCCGTTTCCAGATCAAGCAAAGCCGGTCTCCAGTTCCCCGTTGGCCGCATCGCTCGCTTCCTCAAAGCAGGTCGTTATTCTCAACGTGTTGGATCTGGTTCCCCTGTTTACCTCTCCGCCGTTCTTGAATACCTCTGCGCCGAGGTTTTGGAATTGGCTGGTAATGCTGCAAGGGATAACAAGAAGACAAGGATTGTACCAAGGCACCTTCAACTAGCTGTGAGGAACGATGAAGAATTGAGCAAATTGTTGGGACATGTGACTATTGCTAATGGTGGTGTTTTGCCTAACATTCACCAGACTTTGTTGCCAAAGAAGGTGGCTGGAAAGAAGGGAGAAATTGGATCTGTTAGTCAGGAGTTTTAG

Protein sequence

>Msa1162880

MASDATATTKKGGRGKPKTTKSVSRSSKAGLQFPVGRIARFLKAGRYSQRVGSGSPVYLSAVLEYLCAEVLELAGNAARDNKKTRIVPRHLQLAVRNDEELSKLLGHVTIANGGVLPNIHQTLLPKKVAGKKGEIGSVSQEF*