Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1047380 | XP_013447447.1 | 91.851 | 859 | 38 | 4 | 1 | 859 | 1 | 827 | 0.0 | 1570 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1047380 | sp|Q9AXT8|CMT1_MAIZE | 52.970 | 808 | 312 | 15 | 57 | 848 | 137 | 892 | 0.0 | 838 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1047380 | G7ZY08 | 91.851 | 859 | 38 | 4 | 1 | 859 | 1 | 827 | 0.0 | 1570 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0606100 | Msa1047380 | 0.803793 | 2.942687e-49 | -8.615850e-47 |
Msa0800660 | Msa1047380 | 0.801123 | 1.044302e-48 | -8.615850e-47 |
Msa0439080 | Msa1047380 | 0.959459 | 1.826650e-117 | -8.615850e-47 |
Msa1008680 | Msa1047380 | 0.800127 | 1.667557e-48 | -8.615850e-47 |
Msa1033920 | Msa1047380 | 0.807313 | 5.371930e-50 | -8.615850e-47 |
Msa1047380 | Msa1082380 | 0.800363 | 1.493005e-48 | -8.615850e-47 |
Msa1047380 | Msa1091410 | 0.874143 | 8.501215e-68 | -8.615850e-47 |
Msa1047380 | Msa1116660 | 0.803679 | 3.107308e-49 | -8.615850e-47 |
Msa1047380 | Msa1116740 | 0.803196 | 3.911533e-49 | -8.615850e-47 |
Msa1047380 | Msa1127280 | 0.811466 | 6.904251e-51 | -8.615850e-47 |
Msa1047380 | Msa1134790 | 0.959475 | 1.752162e-117 | -8.615850e-47 |
Msa1047380 | Msa1139050 | 0.804703 | 1.902055e-49 | -8.615850e-47 |
Msa1047380 | Msa1162880 | 0.834449 | 2.978368e-56 | -8.615850e-47 |
Msa1047380 | Msa1165480 | 0.820051 | 8.413165e-53 | -8.615850e-47 |
Msa1047380 | Msa1254540 | 0.800525 | 1.383283e-48 | -8.615850e-47 |
Msa1047380 | Msa1342600 | 0.921422 | 3.653803e-88 | -8.615850e-47 |
Msa1047380 | Msa1447170 | 0.817966 | 2.507221e-52 | -8.615850e-47 |
Msa0561560 | Msa1047380 | 0.814370 | 1.595013e-51 | -8.615850e-47 |
Msa0563740 | Msa1047380 | 0.802907 | 4.488554e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1047380 | MtrunA17_Chr7g0215341 | 91.851 | 859 | 38 | 4 | 1 | 859 | 1 | 827 | 0.0 | 1570 |
Msa1047380 | MtrunA17_Chr6g0484831 | 87.587 | 862 | 77 | 4 | 1 | 859 | 1 | 835 | 0.0 | 1523 |
Msa1047380 | MtrunA17_Chr5g0406641 | 88.515 | 862 | 68 | 5 | 1 | 858 | 1 | 835 | 0.0 | 1503 |
Msa1047380 | MtrunA17_Chr4g0007641 | 77.153 | 871 | 159 | 8 | 1 | 859 | 1 | 843 | 0.0 | 1343 |
Msa1047380 | MtrunA17_Chr6g0464681 | 66.480 | 895 | 195 | 11 | 1 | 859 | 1 | 826 | 0.0 | 1156 |
Msa1047380 | MtrunA17_Chr6g0486931 | 53.722 | 806 | 320 | 13 | 57 | 843 | 146 | 917 | 0.0 | 851 |
Msa1047380 | MtrunA17_Chr8g0369361 | 49.688 | 801 | 353 | 14 | 57 | 842 | 9 | 774 | 0.0 | 766 |
Msa1047380 | MtrunA17_Chr5g0427891 | 55.135 | 370 | 138 | 4 | 474 | 843 | 1 | 342 | 2.93e-131 | 397 |
Msa1047380 | MtrunA17_Chr2g0302601 | 31.234 | 397 | 214 | 9 | 434 | 826 | 1215 | 1556 | 1.40e-50 | 193 |
Msa1047380 | MtrunA17_Chr6g0477371 | 31.234 | 397 | 214 | 9 | 434 | 826 | 1206 | 1547 | 2.49e-49 | 189 |
Msa1047380 | MtrunA17_Chr4g0017221 | 30.982 | 397 | 215 | 9 | 434 | 826 | 1190 | 1531 | 1.30e-48 | 187 |
Msa1047380 | MtrunA17_Chr8g0364091 | 44.068 | 177 | 87 | 6 | 125 | 290 | 37 | 212 | 6.88e-37 | 139 |
Msa1047380 | MtrunA17_Chr8g0364111 | 77.273 | 66 | 15 | 0 | 777 | 842 | 3 | 68 | 6.87e-29 | 110 |
Msa1047380 | MtrunA17_Chr5g0427881 | 58.462 | 65 | 27 | 0 | 385 | 449 | 39 | 103 | 6.79e-22 | 91.3 |
Msa1047380 | MtrunA17_Chr5g0427871 | 40.299 | 134 | 64 | 3 | 34 | 151 | 8 | 141 | 8.50e-22 | 92.4 |
Msa1047380 | MtrunA17_Chr3g0087051 | 46.988 | 83 | 42 | 1 | 746 | 826 | 68 | 150 | 6.91e-18 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1047380 | AT1G80740.1 | 49.639 | 832 | 342 | 12 | 42 | 846 | 4 | 785 | 0.0 | 795 |
Msa1047380 | AT1G69770.1 | 49.595 | 865 | 369 | 15 | 1 | 839 | 1 | 824 | 0.0 | 790 |
Msa1047380 | AT4G19020.1 | 49.250 | 800 | 351 | 10 | 57 | 842 | 523 | 1281 | 0.0 | 771 |
Msa1047380 | AT4G19020.2 | 49.250 | 800 | 351 | 10 | 57 | 842 | 475 | 1233 | 0.0 | 771 |
Msa1047380 | AT4G14140.3 | 33.750 | 400 | 200 | 11 | 434 | 826 | 1168 | 1509 | 2.72e-53 | 202 |
Msa1047380 | AT4G14140.1 | 33.750 | 400 | 200 | 11 | 434 | 826 | 1168 | 1509 | 2.72e-53 | 202 |
Msa1047380 | AT4G14140.2 | 33.750 | 400 | 200 | 11 | 434 | 826 | 1194 | 1535 | 3.37e-53 | 202 |
Msa1047380 | AT4G08990.1 | 33.250 | 400 | 202 | 10 | 434 | 826 | 1161 | 1502 | 2.43e-51 | 196 |
Msa1047380 | AT4G13610.1 | 32.170 | 401 | 193 | 12 | 434 | 826 | 1070 | 1399 | 5.87e-49 | 189 |
Msa1047380 | AT5G49160.2 | 30.905 | 398 | 214 | 9 | 434 | 826 | 1095 | 1436 | 1.42e-46 | 181 |
Msa1047380 | AT5G49160.1 | 31.000 | 400 | 211 | 10 | 434 | 826 | 1183 | 1524 | 1.70e-46 | 181 |
Find 206 sgRNAs with CRISPR-Local
Find 403 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATTTGCTGGTGGGTTTC+TGG | 0.008640 | 7_2:-8267938 | Msa1047380:CDS |
ACTTTACTGGATTTGTATTC+TGG | 0.102309 | 7_2:-8269184 | Msa1047380:CDS |
CCAAAACGTACGTGAGTTTC+TGG | 0.160369 | 7_2:+8268945 | None:intergenic |
TTCTAGGCCCTGAATATTAT+TGG | 0.195110 | 7_2:+8265205 | None:intergenic |
TGAAGTCTCACTTTCTATTT+TGG | 0.212259 | 7_2:+8269306 | None:intergenic |
TCAACACTTTCAAATGAATC+TGG | 0.268377 | 7_2:-8269286 | Msa1047380:CDS |
ACATTCATTTATACAATTCT+AGG | 0.285423 | 7_2:+8265189 | None:intergenic |
TAGACAACTTGGGTACTTAA+AGG | 0.288833 | 7_2:+8265331 | None:intergenic |
TGTGAGAAGTTTGTACTAAA+TGG | 0.291004 | 7_2:-8268763 | Msa1047380:CDS |
ACATTAGGTTTGGCAATTCT+AGG | 0.297456 | 7_2:-8265386 | Msa1047380:CDS |
GTTGAACCGCTCAGTGTAAA+TGG | 0.300679 | 7_2:+8271389 | None:intergenic |
TAGGCCTGAGTGGACTTTAC+TGG | 0.302719 | 7_2:-8269197 | Msa1047380:CDS |
CTGATGATTATGCAAGATTC+TGG | 0.311181 | 7_2:-8265158 | Msa1047380:three_prime_UTR |
GATTCTGGAAACATAAAATA+TGG | 0.313320 | 7_2:-8265143 | Msa1047380:three_prime_UTR |
CTTGCCCTTGGATACACATT+AGG | 0.317533 | 7_2:-8265401 | Msa1047380:CDS |
TTCGATTTCTTTCTTCTAGA+AGG | 0.320245 | 7_2:+8271089 | None:intergenic |
TTCTTCAACCGGAGATTGTT+TGG | 0.326628 | 7_2:+8271130 | None:intergenic |
AAATTTGCTGGTGGGTTTCT+GGG | 0.327523 | 7_2:-8267937 | Msa1047380:CDS |
CCAGACTGCTATAAGCTTTG+TGG | 0.329709 | 7_2:-8265979 | Msa1047380:CDS |
CATAATATCAATTCAAGATA+TGG | 0.331571 | 7_2:+8266780 | None:intergenic |
AACATTTGAGAAAGTTATAT+AGG | 0.344153 | 7_2:+8269443 | None:intergenic |
CATCCGAGCTTGATAATTCA+TGG | 0.344162 | 7_2:+8267888 | None:intergenic |
ATCCTTTAGATTGTTTAGTT+AGG | 0.347736 | 7_2:-8269650 | Msa1047380:CDS |
CATATGGCCTTCCTCAATTT+CGG | 0.349601 | 7_2:-8267846 | Msa1047380:CDS |
CCACCTTGTCAAGGTGTTAG+TGG | 0.350266 | 7_2:-8268090 | Msa1047380:CDS |
ATGTCCACTGGTCTTTGCTT+TGG | 0.352341 | 7_2:-8269151 | Msa1047380:CDS |
AGATATGGAACCTTCTCCTT+TGG | 0.356040 | 7_2:+8266795 | None:intergenic |
CTTTACTGGATTTGTATTCT+GGG | 0.362248 | 7_2:-8269183 | Msa1047380:CDS |
TTAGTGGTTTCAATCGCTTC+AGG | 0.364770 | 7_2:-8268074 | Msa1047380:CDS |
GTCAAATTAAAGAATGTAAT+AGG | 0.367477 | 7_2:-8269216 | Msa1047380:CDS |
GGGCTCCCATGTATCATAAC+TGG | 0.370498 | 7_2:+8268457 | None:intergenic |
TATCCAAGGGCAAGGGCAAC+AGG | 0.371847 | 7_2:+8265410 | None:intergenic |
AGGAACGACTTCGTCTTGTT+TGG | 0.374277 | 7_2:+8271175 | None:intergenic |
GAAACATAAAATATGGCAAA+TGG | 0.375563 | 7_2:-8265136 | Msa1047380:three_prime_UTR |
GTTCCTGTTGCCCTTGCCCT+TGG | 0.380094 | 7_2:-8265413 | Msa1047380:CDS |
TTCAATCTTTACCGTGTCTT+CGG | 0.381407 | 7_2:+8269824 | None:intergenic |
ACCTGACTCTGAGGTATTTG+AGG | 0.384130 | 7_2:-8268662 | Msa1047380:CDS |
AACACATACCTCTGTTTGAC+AGG | 0.386966 | 7_2:+8265955 | None:intergenic |
GTAAAATATTGTTCTTCATC+AGG | 0.390612 | 7_2:+8269867 | None:intergenic |
AAAAGAGTGTATCTAAAATC+TGG | 0.397497 | 7_2:-8266629 | Msa1047380:CDS |
ACAAATGTCATAGCATAATC+TGG | 0.400607 | 7_2:+8266512 | None:intergenic |
TCCAGAGATGGTGAATTATT+CGG | 0.404648 | 7_2:-8266907 | Msa1047380:intron |
AGACAACTTGGGTACTTAAA+GGG | 0.412259 | 7_2:+8265332 | None:intergenic |
TTGTTTGGCTTTCTTCCGTT+TGG | 0.415225 | 7_2:+8271145 | None:intergenic |
CCTTGGATACACATTAGGTT+TGG | 0.421810 | 7_2:-8265396 | Msa1047380:CDS |
TGGCCAAGGCATTATACCTT+GGG | 0.423475 | 7_2:-8267464 | Msa1047380:CDS |
ACATTTGAGAAAGTTATATA+GGG | 0.426320 | 7_2:+8269444 | None:intergenic |
GCTGAATACAACAGGCCATT+TGG | 0.427862 | 7_2:-8266394 | Msa1047380:CDS |
ATGATGGCTGCAGGGTCATA+TGG | 0.428980 | 7_2:-8267862 | Msa1047380:CDS |
TTCCTAACTAAACAATCTAA+AGG | 0.433146 | 7_2:+8269648 | None:intergenic |
TATCGTGAAGCGAAGGTTGA+TGG | 0.441672 | 7_2:-8270770 | Msa1047380:CDS |
CTTCGTCGGAGAACTTATTC+CGG | 0.444090 | 7_2:-8271036 | Msa1047380:CDS |
ATGAGTTGGTAACGGATATG+AGG | 0.447163 | 7_2:+8267674 | None:intergenic |
TAAAGAAAACAAGGTGGAAT+GGG | 0.451055 | 7_2:-8266663 | Msa1047380:CDS |
GAAACCAGTTCTTCTTCAAC+CGG | 0.452190 | 7_2:+8271119 | None:intergenic |
CTAAGAACTCTGTCTTGGTC+TGG | 0.452322 | 7_2:+8266033 | None:intergenic |
CTGGATTTGTATTCTGGGTG+TGG | 0.458568 | 7_2:-8269178 | Msa1047380:CDS |
CTGATGAAGCACAAAAGAAA+TGG | 0.459268 | 7_2:-8271013 | Msa1047380:CDS |
CTTGCATAATCATCAGTTGT+AGG | 0.460358 | 7_2:+8265165 | None:intergenic |
TTTCTTACTTCAAACTCAGT+AGG | 0.462655 | 7_2:+8267627 | None:intergenic |
ATCTCCGGTTGAAGAAGAAC+TGG | 0.462907 | 7_2:-8271123 | Msa1047380:CDS |
ATGTATCTGCTGAATACAAC+AGG | 0.465376 | 7_2:-8266402 | Msa1047380:CDS |
CTCAGTAGGGATGACTGATC+TGG | 0.468959 | 7_2:+8267641 | None:intergenic |
CAACACTTTCAAATGAATCT+GGG | 0.470283 | 7_2:-8269285 | Msa1047380:CDS |
CGAATAACAACCTGGTTATG+AGG | 0.471305 | 7_2:+8266322 | None:intergenic |
ATGCTATGACATTTGTTCAC+GGG | 0.472626 | 7_2:-8266505 | Msa1047380:CDS |
TTTCTGGGGCGTTATGCTGT+AGG | 0.473896 | 7_2:-8267922 | Msa1047380:CDS |
CGGATGGGAATGATGGCTGC+AGG | 0.474115 | 7_2:-8267871 | Msa1047380:CDS |
AAAGGACGGGCTAGACAACT+TGG | 0.474566 | 7_2:+8265320 | None:intergenic |
ACAGGCCATTTGGTCGACTT+TGG | 0.475021 | 7_2:-8266384 | Msa1047380:CDS |
AATATACCTCAAGCCCTCAA+TGG | 0.475252 | 7_2:+8268436 | None:intergenic |
ACCTCAAATACCTCAGAGTC+AGG | 0.475532 | 7_2:+8268661 | None:intergenic |
TTCGGCTCTGTAAAACCATT+GGG | 0.476357 | 7_2:+8269842 | None:intergenic |
CCACAAAGCTTATAGCAGTC+TGG | 0.481850 | 7_2:+8265979 | None:intergenic |
ACGATTCCAGTTATGATACA+TGG | 0.482110 | 7_2:-8268463 | Msa1047380:CDS |
TGTGTGTGTGCAGGTGATTA+AGG | 0.483671 | 7_2:-8269730 | Msa1047380:intron |
AAACATAAAATATGGCAAAT+GGG | 0.485354 | 7_2:-8265135 | Msa1047380:three_prime_UTR |
GCCATTTGGTCGACTTTGGT+GGG | 0.487889 | 7_2:-8266380 | Msa1047380:CDS |
CGAGAGAATGCAAGGCTACA+AGG | 0.488910 | 7_2:-8266006 | Msa1047380:CDS |
TTTATCAGCTGCATGGACAT+TGG | 0.493693 | 7_2:+8269261 | None:intergenic |
TTCTTACTTCAAACTCAGTA+GGG | 0.495616 | 7_2:+8267628 | None:intergenic |
ATATACCTCAAGCCCTCAAT+GGG | 0.497888 | 7_2:+8268437 | None:intergenic |
CTTCGGCTCTGTAAAACCAT+TGG | 0.499873 | 7_2:+8269841 | None:intergenic |
TCATCATCAACTACATCTAA+AGG | 0.502737 | 7_2:+8265302 | None:intergenic |
GGCCATTTGGTCGACTTTGG+TGG | 0.503320 | 7_2:-8266381 | Msa1047380:CDS |
GATACATGGGAGCCCATTGA+GGG | 0.504051 | 7_2:-8268449 | Msa1047380:CDS |
TGCATATTCATTTATATCCA+CGG | 0.506267 | 7_2:+8268992 | None:intergenic |
CACAAAAGAAATGGCCTCAC+CGG | 0.507084 | 7_2:-8271004 | Msa1047380:CDS |
GAACTCTGTCTTGGTCTGGA+TGG | 0.507573 | 7_2:+8266037 | None:intergenic |
AAAGAAATCGAAGCAATCTT+CGG | 0.508099 | 7_2:-8271078 | Msa1047380:CDS |
GGGTGTGGAGCTATGTCCAC+TGG | 0.509075 | 7_2:-8269163 | Msa1047380:CDS |
TCATCGGTGTTTAATTTCAA+AGG | 0.509674 | 7_2:+8266840 | None:intergenic |
TCAGCAACTAATTGTTTACA+TGG | 0.512928 | 7_2:-8268019 | Msa1047380:CDS |
CACCACAAATAAAATCAGCT+TGG | 0.514779 | 7_2:+8268115 | None:intergenic |
TTAAAGAAAACAAGGTGGAA+TGG | 0.515036 | 7_2:-8266664 | Msa1047380:CDS |
TCCGACGATGCATGCTTCGT+CGG | 0.515548 | 7_2:-8271050 | Msa1047380:CDS |
TTAGATGTAGTTGATGATGA+TGG | 0.517459 | 7_2:-8265299 | Msa1047380:CDS |
GTCCCCAAGGTATAATGCCT+TGG | 0.517822 | 7_2:+8267461 | None:intergenic |
ATCTTTCAGGTGCAATGGAA+GGG | 0.518544 | 7_2:-8268488 | Msa1047380:intron |
AAGAAGATGAATAGTGAAAG+CGG | 0.518886 | 7_2:+8271277 | None:intergenic |
TCAAGCTCGGATGGGAATGA+TGG | 0.519547 | 7_2:-8267878 | Msa1047380:CDS |
CTGGCCAAGGCATTATACCT+TGG | 0.521309 | 7_2:-8267465 | Msa1047380:CDS |
CACTAATGAAAAGTGTCAGC+TGG | 0.523124 | 7_2:-8267484 | Msa1047380:CDS |
AAAACACGCATCCGAAATTG+AGG | 0.524141 | 7_2:+8267835 | None:intergenic |
CAAAACGTACGTGAGTTTCT+GGG | 0.525514 | 7_2:+8268946 | None:intergenic |
TCGTTCCTCATTCTTCCAAA+CGG | 0.526193 | 7_2:-8271160 | Msa1047380:CDS |
TTATAATCTTTCAGGTGCAA+TGG | 0.528275 | 7_2:-8268493 | Msa1047380:intron |
GAAGCCTAAGTATGTTCTCA+TGG | 0.528299 | 7_2:-8267980 | Msa1047380:CDS |
AACAACCTGGTTATGAGGCT+CGG | 0.528328 | 7_2:+8266327 | None:intergenic |
AATCTTTCAGGTGCAATGGA+AGG | 0.528541 | 7_2:-8268489 | Msa1047380:intron |
TCCCACCAAAGTCGACCAAA+TGG | 0.528934 | 7_2:+8266379 | None:intergenic |
CATGAATTATCAAGCTCGGA+TGG | 0.529786 | 7_2:-8267887 | Msa1047380:CDS |
GAAGAAAGCCAAACAATCTC+CGG | 0.530553 | 7_2:-8271138 | Msa1047380:CDS |
GCGATTATTATAAATGAAGC+GGG | 0.531041 | 7_2:+8271311 | None:intergenic |
TTCTTCCGTTTGGAAGAATG+AGG | 0.531258 | 7_2:+8271155 | None:intergenic |
ACAGATTCTGATTTGAATGC+TGG | 0.534166 | 7_2:-8268730 | Msa1047380:CDS |
ATCAACTACATCTAAAGGAC+GGG | 0.535962 | 7_2:+8265307 | None:intergenic |
CCAAACCTAATGTGTATCCA+AGG | 0.536081 | 7_2:+8265396 | None:intergenic |
GAGTGAGGATGAAAGTTTGA+AGG | 0.536508 | 7_2:-8270804 | Msa1047380:CDS |
TTGCCACATTCCAAAGGAGA+AGG | 0.538842 | 7_2:-8266805 | Msa1047380:CDS |
ATCGTGAAGCGAAGGTTGAT+GGG | 0.542081 | 7_2:-8270769 | Msa1047380:CDS |
TATATCAGATTAAAGAGAAG+TGG | 0.544554 | 7_2:-8267251 | Msa1047380:intron |
TTCTTGCATTAAGCTTGTCA+CGG | 0.545328 | 7_2:-8269119 | Msa1047380:intron |
GAATGCTAAGAACTCTGTCT+TGG | 0.555016 | 7_2:+8266028 | None:intergenic |
CTGGATTCAACCTCATGAGT+TGG | 0.555366 | 7_2:+8267660 | None:intergenic |
GAACCTTCTCCTTTGGAATG+TGG | 0.555858 | 7_2:+8266802 | None:intergenic |
GTGGTGAGACTTACAGGAAG+AGG | 0.556985 | 7_2:+8268242 | None:intergenic |
AGCGATTATTATAAATGAAG+CGG | 0.557507 | 7_2:+8271310 | None:intergenic |
ATGTGCAGGTACATGCAAGT+TGG | 0.560046 | 7_2:-8265449 | Msa1047380:intron |
CTCACTCGTTCTTAGTGTAC+CGG | 0.561833 | 7_2:+8270985 | None:intergenic |
CGTTGTCAAAGGACCGTCAT+CGG | 0.561991 | 7_2:+8265358 | None:intergenic |
AGACTACTCTCTATTTGCTA+TGG | 0.562696 | 7_2:-8268634 | Msa1047380:CDS |
TCTAAAATCTGGAAAGCCGT+TGG | 0.563755 | 7_2:-8266618 | Msa1047380:intron |
AGCGATGATGAAAAGAGCTA+CGG | 0.565697 | 7_2:-8267302 | Msa1047380:CDS |
AAGGGCCGAGCCTCATAACC+AGG | 0.568054 | 7_2:-8266332 | Msa1047380:intron |
ATGAATTATCAAGCTCGGAT+GGG | 0.571223 | 7_2:-8267886 | Msa1047380:CDS |
TGTGGTGGGCCACCTTGTCA+AGG | 0.574035 | 7_2:-8268099 | Msa1047380:CDS |
TTGTGTCCACTGTTGTAACA+AGG | 0.575348 | 7_2:-8266351 | Msa1047380:CDS |
TGAAAAGTGTCAGCTGGCCA+AGG | 0.575456 | 7_2:-8267478 | Msa1047380:CDS |
AATTTGCTGGTGGGTTTCTG+GGG | 0.576721 | 7_2:-8267936 | Msa1047380:CDS |
TTGAATGCTGGTGAAGAAGC+TGG | 0.577481 | 7_2:-8268718 | Msa1047380:CDS |
TTCTCCATGAGAACATACTT+AGG | 0.578027 | 7_2:+8267976 | None:intergenic |
CGCAATTGATGATCTCCCAC+CGG | 0.580227 | 7_2:-8267439 | Msa1047380:intron |
GAAGAAGCTGGTGAAGAAGC+TGG | 0.580453 | 7_2:-8268706 | Msa1047380:CDS |
CCTACTCTGAAATATAGTCC+TGG | 0.581965 | 7_2:+8268589 | None:intergenic |
GGACTACATTGCTAAGATTG+TGG | 0.583306 | 7_2:-8269904 | Msa1047380:CDS |
CTAATGTGTATCCAAGGGCA+AGG | 0.584216 | 7_2:+8265402 | None:intergenic |
TGATACATGGGAGCCCATTG+AGG | 0.584875 | 7_2:-8268450 | Msa1047380:CDS |
TGAAAAGACATGGATTAATG+AGG | 0.588868 | 7_2:+8265260 | None:intergenic |
GACAACTTGGGTACTTAAAG+GGG | 0.589664 | 7_2:+8265333 | None:intergenic |
TTAGCATTCGAGAGAATGCA+AGG | 0.591436 | 7_2:-8266014 | Msa1047380:CDS |
GCGATGATGAAAAGAGCTAC+GGG | 0.591951 | 7_2:-8267301 | Msa1047380:CDS |
CTGAGCGGTTCAACAAGTGC+GGG | 0.592318 | 7_2:-8271380 | Msa1047380:five_prime_UTR |
GCAAACTCTCTCATAGTCAT+CGG | 0.593163 | 7_2:+8266824 | None:intergenic |
TCCGACGAAGCATGCATCGT+CGG | 0.593618 | 7_2:+8271049 | None:intergenic |
TTTAAGTCTACTGAAAGAGT+GGG | 0.594108 | 7_2:-8268794 | Msa1047380:CDS |
TGACTTGAAGAGATGGGCCG+TGG | 0.594840 | 7_2:-8269009 | Msa1047380:intron |
TGGCCATGAATTATCAAGCT+CGG | 0.597417 | 7_2:-8267891 | Msa1047380:CDS |
CGATTCCAGTTATGATACAT+GGG | 0.597731 | 7_2:-8268462 | Msa1047380:CDS |
GGGAGCCCATTGAGGGCTTG+AGG | 0.601086 | 7_2:-8268442 | Msa1047380:intron |
GATAATTCATGGCCACTAGA+CGG | 0.606811 | 7_2:+8267899 | None:intergenic |
ATTCTAGGACTCTCCGATGA+CGG | 0.608856 | 7_2:-8265371 | Msa1047380:CDS |
TGCAGGTGATTAAGGACCAT+GGG | 0.609611 | 7_2:-8269722 | Msa1047380:intron |
ATAATTCCATTTACACTGAG+CGG | 0.609918 | 7_2:-8271395 | None:intergenic |
TTAAAGGGGAGCGTTGTCAA+AGG | 0.611103 | 7_2:+8265347 | None:intergenic |
TGAGTTGGTAACGGATATGA+GGG | 0.612406 | 7_2:+8267675 | None:intergenic |
TATGCTATGACATTTGTTCA+CGG | 0.613180 | 7_2:-8266506 | Msa1047380:CDS |
GGCAAACTTCAGGGACCTCG+AGG | 0.614201 | 7_2:-8266696 | Msa1047380:CDS |
GATCATCAATTGCGTCCCCA+AGG | 0.614386 | 7_2:+8267448 | None:intergenic |
GTTTCACTATCGTGAAGCGA+AGG | 0.614568 | 7_2:-8270777 | Msa1047380:CDS |
GAGAGTTTGCCACATTCCAA+AGG | 0.615917 | 7_2:-8266811 | Msa1047380:CDS |
AGATAACAGTTGAAAAGACA+TGG | 0.616171 | 7_2:+8265250 | None:intergenic |
CATCAACTACATCTAAAGGA+CGG | 0.616327 | 7_2:+8265306 | None:intergenic |
AATTCAGGTGAGGAATGAGC+CGG | 0.616828 | 7_2:-8268827 | Msa1047380:intron |
ACTTTCTCAAATGTTGACAA+TGG | 0.620113 | 7_2:-8269435 | Msa1047380:intron |
TCAACCTCATGAGTTGGTAA+CGG | 0.622459 | 7_2:+8267666 | None:intergenic |
TTATGCTGTAGGCCGTCTAG+TGG | 0.625272 | 7_2:-8267911 | Msa1047380:CDS |
TGATCATACAGCATACCACT+TGG | 0.627170 | 7_2:+8266867 | None:intergenic |
CACGCATCCGAAATTGAGGA+AGG | 0.629581 | 7_2:+8267839 | None:intergenic |
GCAAACTTCAGGGACCTCGA+GGG | 0.637506 | 7_2:-8266695 | Msa1047380:CDS |
CAAACCTAATGTGTATCCAA+GGG | 0.638670 | 7_2:+8265397 | None:intergenic |
GGATGGGAATGATGGCTGCA+GGG | 0.639348 | 7_2:-8267870 | Msa1047380:CDS |
TAATGTGTATCCAAGGGCAA+GGG | 0.640727 | 7_2:+8265403 | None:intergenic |
AAGAATGTAATAGGCCTGAG+TGG | 0.644520 | 7_2:-8269207 | Msa1047380:CDS |
TGCTCCAAAGCAAAGACCAG+TGG | 0.647355 | 7_2:+8269147 | None:intergenic |
AAATCCAGTAAAGTCCACTC+AGG | 0.651482 | 7_2:+8269193 | None:intergenic |
AGATGATTCACCTGACTCTG+AGG | 0.655360 | 7_2:-8268671 | Msa1047380:CDS |
TGTGTCCACTGTTGTAACAA+GGG | 0.656136 | 7_2:-8266350 | Msa1047380:CDS |
ACACATACCTCTGTTTGACA+GGG | 0.662004 | 7_2:+8265956 | None:intergenic |
ACTGAGCGGTTCAACAAGTG+CGG | 0.664773 | 7_2:-8271381 | Msa1047380:five_prime_UTR |
AAGGACGGGCTAGACAACTT+GGG | 0.665885 | 7_2:+8265321 | None:intergenic |
ATATCCGTTACCAACTCATG+AGG | 0.669953 | 7_2:-8267670 | Msa1047380:CDS |
ATGTCAAAATAGAATTCACA+AGG | 0.670234 | 7_2:+8269480 | None:intergenic |
CTCGGCCCTTGTTACAACAG+TGG | 0.671085 | 7_2:+8266345 | None:intergenic |
GTGCAGGTGATTAAGGACCA+TGG | 0.674534 | 7_2:-8269723 | Msa1047380:intron |
GGCCAAGGCATTATACCTTG+GGG | 0.678055 | 7_2:-8267463 | Msa1047380:CDS |
CATATATACATACTTAGAGG+AGG | 0.681619 | 7_2:+8266481 | None:intergenic |
CCACTAACACCTTGACAAGG+TGG | 0.683957 | 7_2:+8268090 | None:intergenic |
GACTCTCAAAGTGCACCAAG+TGG | 0.685496 | 7_2:-8266882 | Msa1047380:CDS |
TTTGTGGCCCTGTCAAACAG+AGG | 0.688111 | 7_2:-8265963 | Msa1047380:intron |
TCAAAATAGAATTCACAAGG+AGG | 0.689598 | 7_2:+8269483 | None:intergenic |
TGTGCTAGTTAAAGAAAACA+AGG | 0.696627 | 7_2:-8266672 | Msa1047380:CDS |
CTTTAACTAGCACACCCTCG+AGG | 0.704914 | 7_2:+8266681 | None:intergenic |
GCTAGTTAAAGAAAACAAGG+TGG | 0.715923 | 7_2:-8266669 | Msa1047380:CDS |
TCGTTCTTAGTGTACCGGTG+AGG | 0.720228 | 7_2:+8270990 | None:intergenic |
AAACCACTAACACCTTGACA+AGG | 0.729461 | 7_2:+8268087 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGAAATCATATATAAAATAA+CGG | + | chr7_2:8266322-8266341 | None:intergenic | 10.0% |
!!! | TTTATTTCATGTTGAAATTT+TGG | - | chr7_2:8265792-8265811 | Msa1047380:intron | 15.0% |
!!! | TGTTGAAAATTTTGTTTTTT+AGG | - | chr7_2:8265883-8265902 | Msa1047380:intron | 15.0% |
!!! | GTTGAAAATTTTGTTTTTTA+GGG | - | chr7_2:8265884-8265903 | Msa1047380:intron | 15.0% |
!!! | TGTTGTAAATTTTGTTTTTT+AGG | - | chr7_2:8265921-8265940 | Msa1047380:intron | 15.0% |
!!! | GTTGTAAATTTTGTTTTTTA+GGG | - | chr7_2:8265922-8265941 | Msa1047380:intron | 15.0% |
!!! | TTTTTTTTTTATGTTGATTG+TGG | - | chr7_2:8267097-8267116 | Msa1047380:intron | 15.0% |
!! | CTATAAATTTATAATCTTTC+AGG | - | chr7_2:8267947-8267966 | Msa1047380:CDS | 15.0% |
!!! | ATGAAAGATTTTGTTATAAA+TGG | - | chr7_2:8268164-8268183 | Msa1047380:intron | 15.0% |
!!! | TTTTGTTATAAATGGATATA+AGG | - | chr7_2:8268172-8268191 | Msa1047380:intron | 15.0% |
!!! | TTACTCTAAATGTTTTAAAA+TGG | - | chr7_2:8268710-8268729 | Msa1047380:CDS | 15.0% |
!! | CATATATTTCAATTTCAAAA+TGG | + | chr7_2:8270696-8270715 | None:intergenic | 15.0% |
!! | ATATAGAAGTTAGTTATAAT+AGG | + | chr7_2:8270752-8270771 | None:intergenic | 15.0% |
!!! | AAAAAAAAGTATGAAATCCA+AGG | - | chr7_2:8266232-8266251 | Msa1047380:intron | 20.0% |
!!! | TTTATGGTTATTGTTGATTT+TGG | - | chr7_2:8266686-8266705 | Msa1047380:CDS | 20.0% |
!!! | ATGTTGATTTTATATACTAC+AGG | - | chr7_2:8266922-8266941 | Msa1047380:intron | 20.0% |
!! | ACATTTGAGAAAGTTATATA+GGG | + | chr7_2:8267007-8267026 | None:intergenic | 20.0% |
!! | AACATTTGAGAAAGTTATAT+AGG | + | chr7_2:8267008-8267027 | None:intergenic | 20.0% |
!! | GTCAAATTAAAGAATGTAAT+AGG | - | chr7_2:8267232-8267251 | Msa1047380:intron | 20.0% |
!!! | TAATTTGCATAATGTTTCTT+TGG | - | chr7_2:8267361-8267380 | Msa1047380:intron | 20.0% |
!! | TTGCATAAGATAAAGTTATA+AGG | + | chr7_2:8267893-8267912 | None:intergenic | 20.0% |
!!! | ATAATCAATATCTTGATGAT+TGG | + | chr7_2:8268038-8268057 | None:intergenic | 20.0% |
!!! | TTAAGATTTGCTGTTAATTA+AGG | - | chr7_2:8268076-8268095 | Msa1047380:CDS | 20.0% |
!!! | TCTAAATGTTTTAAAATGGA+AGG | - | chr7_2:8268714-8268733 | Msa1047380:CDS | 20.0% |
!!! | TTTGAGTTTTGAATTATTCT+TGG | - | chr7_2:8269235-8269254 | Msa1047380:CDS | 20.0% |
!! | TATAATTAGAATTGTGTATG+TGG | - | chr7_2:8269426-8269445 | Msa1047380:intron | 20.0% |
!! | CATAATATCAATTCAAGATA+TGG | + | chr7_2:8269671-8269690 | None:intergenic | 20.0% |
!!! | TTTTAAAGAGGTTTTACAAT+GGG | + | chr7_2:8270201-8270220 | None:intergenic | 20.0% |
!!! | AATACAACATTGTTTTAAAG+AGG | + | chr7_2:8270213-8270232 | None:intergenic | 20.0% |
!! | ATTTCAATTTCAAAATGGAA+GGG | + | chr7_2:8270691-8270710 | None:intergenic | 20.0% |
!! | TATTTCAATTTCAAAATGGA+AGG | + | chr7_2:8270692-8270711 | None:intergenic | 20.0% |
!!! | ATAATAGGTTTATCAGTTTT+TGG | + | chr7_2:8270737-8270756 | None:intergenic | 20.0% |
!! | TTAGGTGTAATATTTCTTAT+TGG | - | chr7_2:8270832-8270851 | Msa1047380:intron | 20.0% |
!! | TTCCATTATTATGTATATCA+TGG | - | chr7_2:8270955-8270974 | Msa1047380:intron | 20.0% |
!!! | TTTTTAAGCCAATAATATTC+AGG | - | chr7_2:8271235-8271254 | Msa1047380:five_prime_UTR | 20.0% |
!!! | TTTTAAGCCAATAATATTCA+GGG | - | chr7_2:8271236-8271255 | Msa1047380:five_prime_UTR | 20.0% |
!! | ACATTCATTTATACAATTCT+AGG | + | chr7_2:8271262-8271281 | None:intergenic | 20.0% |
!! | AAACATAAAATATGGCAAAT+GGG | - | chr7_2:8271313-8271332 | Msa1047380:five_prime_UTR | 20.0% |
! | AGCGATTATTATAAATGAAG+CGG | + | chr7_2:8265141-8265160 | None:intergenic | 25.0% |
!!! | TGTTGAAATTTTGGTGTTTT+AGG | - | chr7_2:8265801-8265820 | Msa1047380:intron | 25.0% |
!!! | GTTGAAATTTTGGTGTTTTA+GGG | - | chr7_2:8265802-8265821 | Msa1047380:intron | 25.0% |
!! | GCTTAAAATTGTGTGTTTTA+TGG | - | chr7_2:8265993-8266012 | Msa1047380:CDS | 25.0% |
!! | TTCATTTCTTTGATTTCTTG+TGG | - | chr7_2:8266016-8266035 | Msa1047380:CDS | 25.0% |
! | TTGATTTCTTGTGGAAAATT+TGG | - | chr7_2:8266025-8266044 | Msa1047380:CDS | 25.0% |
!! | CATGTTGAAAAATGTGTTTT+AGG | - | chr7_2:8266340-8266359 | Msa1047380:CDS | 25.0% |
! | GTAAAATATTGTTCTTCATC+AGG | + | chr7_2:8266584-8266603 | None:intergenic | 25.0% |
! | ATCCTTTAGATTGTTTAGTT+AGG | - | chr7_2:8266798-8266817 | Msa1047380:CDS | 25.0% |
! | TTCCTAACTAAACAATCTAA+AGG | + | chr7_2:8266803-8266822 | None:intergenic | 25.0% |
! | ATGTCAAAATAGAATTCACA+AGG | + | chr7_2:8266971-8266990 | None:intergenic | 25.0% |
! | TGCATATTCATTTATATCCA+CGG | + | chr7_2:8267459-8267478 | None:intergenic | 25.0% |
! | AAAAATCTAGTACTAAGCAA+CGG | + | chr7_2:8268670-8268689 | None:intergenic | 25.0% |
! | GAAATTTACAATCACAACAT+GGG | + | chr7_2:8268890-8268909 | None:intergenic | 25.0% |
! | AGAAATTTACAATCACAACA+TGG | + | chr7_2:8268891-8268910 | None:intergenic | 25.0% |
!!! | TTTGATTCCATTTTTTTCCT+TGG | - | chr7_2:8269090-8269109 | Msa1047380:intron | 25.0% |
! | AAGAAAACCAAGGAAAAAAA+TGG | + | chr7_2:8269100-8269119 | None:intergenic | 25.0% |
! | TGTTTGATAAAAGAAAACCA+AGG | + | chr7_2:8269110-8269129 | None:intergenic | 25.0% |
!!! | TTGGTTTTCTTTTATCAAAC+AGG | - | chr7_2:8269109-8269128 | Msa1047380:intron | 25.0% |
!!! | TATTTTTGAAAATCAGTACG+AGG | + | chr7_2:8269179-8269198 | None:intergenic | 25.0% |
! | TATATCAGATTAAAGAGAAG+TGG | - | chr7_2:8269197-8269216 | Msa1047380:CDS | 25.0% |
!!! | TTCTTGGTTGTTTTCTTTTT+TGG | - | chr7_2:8269251-8269270 | Msa1047380:CDS | 25.0% |
! | ATTTATCAGCTAAAATGTAC+CGG | - | chr7_2:8269362-8269381 | Msa1047380:intron | 25.0% |
!! | AAAAGAGTGTATCTAAAATC+TGG | - | chr7_2:8269819-8269838 | Msa1047380:intron | 25.0% |
! | TATATGGAAAAAAAAGGTTG+TGG | + | chr7_2:8269912-8269931 | None:intergenic | 25.0% |
!!! | ACAACCTTTTTTTTCCATAT+AGG | - | chr7_2:8269911-8269930 | Msa1047380:CDS | 25.0% |
!!! | GTTTTAAAGAGGTTTTACAA+TGG | + | chr7_2:8270202-8270221 | None:intergenic | 25.0% |
! | AATATTACACCTAAAAATCC+TGG | + | chr7_2:8270826-8270845 | None:intergenic | 25.0% |
! | TTCTTATTGGACTAACAATA+TGG | - | chr7_2:8270845-8270864 | Msa1047380:intron | 25.0% |
! | TGCCATGATATACATAATAA+TGG | + | chr7_2:8270960-8270979 | None:intergenic | 25.0% |
!! | GATTCTGGAAACATAAAATA+TGG | - | chr7_2:8271305-8271324 | Msa1047380:five_prime_UTR | 25.0% |
! | GAAACATAAAATATGGCAAA+TGG | - | chr7_2:8271312-8271331 | Msa1047380:five_prime_UTR | 25.0% |
GCGATTATTATAAATGAAGC+GGG | + | chr7_2:8265140-8265159 | None:intergenic | 30.0% | |
AAGAAGATGAATAGTGAAAG+CGG | + | chr7_2:8265174-8265193 | None:intergenic | 30.0% | |
TTCGATTTCTTTCTTCTAGA+AGG | + | chr7_2:8265362-8265381 | None:intergenic | 30.0% | |
AAAGAAATCGAAGCAATCTT+CGG | - | chr7_2:8265370-8265389 | Msa1047380:CDS | 30.0% | |
! | TAGGGTTTATTTCTTCATGT+TGG | - | chr7_2:8265940-8265959 | Msa1047380:intron | 30.0% |
!!! | TGTATAGTGTTTTGATGAAG+CGG | - | chr7_2:8266205-8266224 | Msa1047380:intron | 30.0% |
! | TAGTAATTTGCCACATCATT+CGG | - | chr7_2:8266257-8266276 | Msa1047380:intron | 30.0% |
! | TGATGTGATGAATGTTGTTT+AGG | - | chr7_2:8266505-8266524 | Msa1047380:CDS | 30.0% |
! | GATGTGATGAATGTTGTTTA+GGG | - | chr7_2:8266506-8266525 | Msa1047380:CDS | 30.0% |
! | ATGTGATGAATGTTGTTTAG+GGG | - | chr7_2:8266507-8266526 | Msa1047380:CDS | 30.0% |
! | AACAATATTTTACTGCCCAA+TGG | - | chr7_2:8266591-8266610 | Msa1047380:intron | 30.0% |
!!! | AACTCTTTCGTGTTTTGTTT+TGG | - | chr7_2:8266651-8266670 | Msa1047380:CDS | 30.0% |
!!! | ACTCTTTCGTGTTTTGTTTT+GGG | - | chr7_2:8266652-8266671 | Msa1047380:CDS | 30.0% |
TCAAAATAGAATTCACAAGG+AGG | + | chr7_2:8266968-8266987 | None:intergenic | 30.0% | |
ACTTTCTCAAATGTTGACAA+TGG | - | chr7_2:8267013-8267032 | Msa1047380:intron | 30.0% | |
! | TGAAGTCTCACTTTCTATTT+TGG | + | chr7_2:8267145-8267164 | None:intergenic | 30.0% |
TCAACACTTTCAAATGAATC+TGG | - | chr7_2:8267162-8267181 | Msa1047380:intron | 30.0% | |
CAACACTTTCAAATGAATCT+GGG | - | chr7_2:8267163-8267182 | Msa1047380:intron | 30.0% | |
ACTTTACTGGATTTGTATTC+TGG | - | chr7_2:8267264-8267283 | Msa1047380:CDS | 30.0% | |
CTTTACTGGATTTGTATTCT+GGG | - | chr7_2:8267265-8267284 | Msa1047380:CDS | 30.0% | |
!!! | TTGTTTTTGACTTGAAGAGA+TGG | - | chr7_2:8267432-8267451 | Msa1047380:intron | 30.0% |
!!! | TGTTTTTGACTTGAAGAGAT+GGG | - | chr7_2:8267433-8267452 | Msa1047380:intron | 30.0% |
CTTTCCAAAATGTCAAATTC+AGG | - | chr7_2:8267606-8267625 | Msa1047380:intron | 30.0% | |
!! | TTTTAAGTCTACTGAAAGAG+TGG | - | chr7_2:8267653-8267672 | Msa1047380:CDS | 30.0% |
TTTAAGTCTACTGAAAGAGT+GGG | - | chr7_2:8267654-8267673 | Msa1047380:CDS | 30.0% | |
TGTGAGAAGTTTGTACTAAA+TGG | - | chr7_2:8267685-8267704 | Msa1047380:intron | 30.0% | |
! | TTATAATCTTTCAGGTGCAA+TGG | - | chr7_2:8267955-8267974 | Msa1047380:CDS | 30.0% |
TTGAGTACAAGTCAATAATG+AGG | + | chr7_2:8268233-8268252 | None:intergenic | 30.0% | |
!! | AAGCTGATTTTATTTGTGGT+GGG | - | chr7_2:8268335-8268354 | Msa1047380:intron | 30.0% |
!!! | TGATTTTTTTCATCCTCCAA+TGG | + | chr7_2:8268412-8268431 | None:intergenic | 30.0% |
TCAGCAACTAATTGTTTACA+TGG | - | chr7_2:8268429-8268448 | Msa1047380:intron | 30.0% | |
!!! | GTTGACATTTTGAAATTTGC+TGG | - | chr7_2:8268499-8268518 | Msa1047380:intron | 30.0% |
!!! | ACATTTTGAAATTTGCTGGT+GGG | - | chr7_2:8268503-8268522 | Msa1047380:intron | 30.0% |
TTCTTACTTCAAACTCAGTA+GGG | + | chr7_2:8268823-8268842 | None:intergenic | 30.0% | |
TTTCTTACTTCAAACTCAGT+AGG | + | chr7_2:8268824-8268843 | None:intergenic | 30.0% | |
TCTTTGTACTTTCATAATGC+AGG | - | chr7_2:8268922-8268941 | Msa1047380:intron | 30.0% | |
CAAAATGCAGTTCATATATG+CGG | + | chr7_2:8269388-8269407 | None:intergenic | 30.0% | |
! | TCATCGGTGTTTAATTTCAA+AGG | + | chr7_2:8269611-8269630 | None:intergenic | 30.0% |
TGTGCTAGTTAAAGAAAACA+AGG | - | chr7_2:8269776-8269795 | Msa1047380:intron | 30.0% | |
TTAAAGAAAACAAGGTGGAA+TGG | - | chr7_2:8269784-8269803 | Msa1047380:intron | 30.0% | |
TAAAGAAAACAAGGTGGAAT+GGG | - | chr7_2:8269785-8269804 | Msa1047380:intron | 30.0% | |
! | AGATACACTCTTTTAACAGA+CGG | + | chr7_2:8269813-8269832 | None:intergenic | 30.0% |
TACTAATTCTGTCTTGTCTT+AGG | - | chr7_2:8269853-8269872 | Msa1047380:CDS | 30.0% | |
ACTAATTCTGTCTTGTCTTA+GGG | - | chr7_2:8269854-8269873 | Msa1047380:CDS | 30.0% | |
GGAACCTATATGGAAAAAAA+AGG | + | chr7_2:8269918-8269937 | None:intergenic | 30.0% | |
ACAAATGTCATAGCATAATC+TGG | + | chr7_2:8269939-8269958 | None:intergenic | 30.0% | |
TATGCTATGACATTTGTTCA+CGG | - | chr7_2:8269942-8269961 | Msa1047380:intron | 30.0% | |
CATATATACATACTTAGAGG+AGG | + | chr7_2:8269970-8269989 | None:intergenic | 30.0% | |
GCACATATATACATACTTAG+AGG | + | chr7_2:8269973-8269992 | None:intergenic | 30.0% | |
!!! | ATCTGACCATGTTTTTTGTT+TGG | - | chr7_2:8270288-8270307 | Msa1047380:intron | 30.0% |
TCCAAAGTTATTCCATTTCT+AGG | - | chr7_2:8270381-8270400 | Msa1047380:intron | 30.0% | |
TATGAAAATTTGTGTATGCG+AGG | + | chr7_2:8270592-8270611 | None:intergenic | 30.0% | |
TCATATGAAGTTTACAGACA+AGG | - | chr7_2:8270645-8270664 | Msa1047380:intron | 30.0% | |
!!! | TTTTTGGTTAAGGAATTGGA+AGG | + | chr7_2:8270721-8270740 | None:intergenic | 30.0% |
!!! | TCAGTTTTTGGTTAAGGAAT+TGG | + | chr7_2:8270725-8270744 | None:intergenic | 30.0% |
!!! | GGTTTATCAGTTTTTGGTTA+AGG | + | chr7_2:8270731-8270750 | None:intergenic | 30.0% |
TATTTCCATCTTTAATGTGC+AGG | - | chr7_2:8270985-8271004 | Msa1047380:intron | 30.0% | |
TCATCATCAACTACATCTAA+AGG | + | chr7_2:8271149-8271168 | None:intergenic | 30.0% | |
!! | TTAGATGTAGTTGATGATGA+TGG | - | chr7_2:8271149-8271168 | Msa1047380:CDS | 30.0% |
! | TGAAAAGACATGGATTAATG+AGG | + | chr7_2:8271191-8271210 | None:intergenic | 30.0% |
AGATAACAGTTGAAAAGACA+TGG | + | chr7_2:8271201-8271220 | None:intergenic | 30.0% | |
!!! | GCGTTTTTGAGGCATTTTTA+AGG | + | chr7_2:8265240-8265259 | None:intergenic | 35.0% |
CTGATGAAGCACAAAAGAAA+TGG | - | chr7_2:8265435-8265454 | Msa1047380:CDS | 35.0% | |
! | TGATGGGATTTTATATCAGC+TGG | - | chr7_2:8265695-8265714 | Msa1047380:intron | 35.0% |
! | GTTTTGTGGTACAATCATTC+GGG | + | chr7_2:8266120-8266139 | None:intergenic | 35.0% |
! | CGTTTTGTGGTACAATCATT+CGG | + | chr7_2:8266121-8266140 | None:intergenic | 35.0% |
! | TAGCCAGTAAAAATTTTGCC+TGG | - | chr7_2:8266157-8266176 | Msa1047380:intron | 35.0% |
TGTGGCAAATTACTATTCCT+TGG | + | chr7_2:8266252-8266271 | None:intergenic | 35.0% | |
! | AGTAATTTGCCACATCATTC+GGG | - | chr7_2:8266258-8266277 | Msa1047380:intron | 35.0% |
! | TGTGATGAATGTTGTTTAGG+GGG | - | chr7_2:8266508-8266527 | Msa1047380:CDS | 35.0% |
TTCAATCTTTACCGTGTCTT+CGG | + | chr7_2:8266627-8266646 | None:intergenic | 35.0% | |
! | TTTTGTCAACTAGATTCCCA+TGG | + | chr7_2:8266745-8266764 | None:intergenic | 35.0% |
GGAATCTAGTTGACAAAAAG+AGG | - | chr7_2:8266747-8266766 | Msa1047380:intron | 35.0% | |
GCTGATAAAAATGCGGTTAA+AGG | - | chr7_2:8267201-8267220 | Msa1047380:intron | 35.0% | |
TTCTTGCATTAAGCTTGTCA+CGG | - | chr7_2:8267329-8267348 | Msa1047380:intron | 35.0% | |
! | CTCACCTGAATTTGACATTT+TGG | + | chr7_2:8267613-8267632 | None:intergenic | 35.0% |
CAAAATGTCAAATTCAGGTG+AGG | - | chr7_2:8267611-8267630 | Msa1047380:CDS | 35.0% | |
AGACTTAAAAAGTCTTCTGC+CGG | + | chr7_2:8267643-8267662 | None:intergenic | 35.0% | |
! | ACAGATTCTGATTTGAATGC+TGG | - | chr7_2:8267718-8267737 | Msa1047380:intron | 35.0% |
! | AGACTACTCTCTATTTGCTA+TGG | - | chr7_2:8267814-8267833 | Msa1047380:CDS | 35.0% |
ACGATTCCAGTTATGATACA+TGG | - | chr7_2:8267985-8268004 | Msa1047380:CDS | 35.0% | |
CGATTCCAGTTATGATACAT+GGG | - | chr7_2:8267986-8268005 | Msa1047380:CDS | 35.0% | |
TACAAGTCAATAATGAGGAG+TGG | + | chr7_2:8268228-8268247 | None:intergenic | 35.0% | |
AACCATTAGAGGTGAAAGAA+GGG | + | chr7_2:8268257-8268276 | None:intergenic | 35.0% | |
AAACCATTAGAGGTGAAAGA+AGG | + | chr7_2:8268258-8268277 | None:intergenic | 35.0% | |
!! | GACAGTTGATAAACCATTAG+AGG | + | chr7_2:8268268-8268287 | None:intergenic | 35.0% |
TACTACTTCATGCTTGTCTA+GGG | - | chr7_2:8268310-8268329 | Msa1047380:intron | 35.0% | |
CACCACAAATAAAATCAGCT+TGG | + | chr7_2:8268336-8268355 | None:intergenic | 35.0% | |
!! | CAAGCTGATTTTATTTGTGG+TGG | - | chr7_2:8268334-8268353 | Msa1047380:intron | 35.0% |
TTCTCCATGAGAACATACTT+AGG | + | chr7_2:8268475-8268494 | None:intergenic | 35.0% | |
!!! | GACATTTTGAAATTTGCTGG+TGG | - | chr7_2:8268502-8268521 | Msa1047380:intron | 35.0% |
ATGAATTATCAAGCTCGGAT+GGG | - | chr7_2:8268562-8268581 | Msa1047380:intron | 35.0% | |
! | TTGTGCCCTTTTCTTAGATA+AGG | - | chr7_2:8268862-8268881 | Msa1047380:intron | 35.0% |
GGGTTCCTTATCTAAGAAAA+GGG | + | chr7_2:8268870-8268889 | None:intergenic | 35.0% | |
TGGGTTCCTTATCTAAGAAA+AGG | + | chr7_2:8268871-8268890 | None:intergenic | 35.0% | |
TGTGAGCAAAAACAACATAC+CGG | + | chr7_2:8269031-8269050 | None:intergenic | 35.0% | |
ATTGCAATGAAAGATGTCAG+TGG | - | chr7_2:8269283-8269302 | Msa1047380:CDS | 35.0% | |
! | AACTGCATTTTGTCTTACTC+TGG | - | chr7_2:8269396-8269415 | Msa1047380:intron | 35.0% |
GCATATTGTTACATGTCACA+TGG | - | chr7_2:8269454-8269473 | Msa1047380:CDS | 35.0% | |
! | CCAATTCAAGTTAGTGATGA+AGG | + | chr7_2:8269500-8269519 | None:intergenic | 35.0% |
CCTTCATCACTAACTTGAAT+TGG | - | chr7_2:8269497-8269516 | Msa1047380:CDS | 35.0% | |
! | ATATGTTTCTACTCCAGAGA+TGG | - | chr7_2:8269529-8269548 | Msa1047380:intron | 35.0% |
TCCAGAGATGGTGAATTATT+CGG | - | chr7_2:8269541-8269560 | Msa1047380:intron | 35.0% | |
GCTAGTTAAAGAAAACAAGG+TGG | - | chr7_2:8269779-8269798 | Msa1047380:intron | 35.0% | |
! | GATACACTCTTTTAACAGAC+GGG | + | chr7_2:8269812-8269831 | None:intergenic | 35.0% |
CAAGACAGAATTAGTACCAA+CGG | + | chr7_2:8269849-8269868 | None:intergenic | 35.0% | |
! | AGCATAATCTGGAACCTATA+TGG | + | chr7_2:8269928-8269947 | None:intergenic | 35.0% |
ATGCTATGACATTTGTTCAC+GGG | - | chr7_2:8269943-8269962 | Msa1047380:intron | 35.0% | |
ATGTATCTGCTGAATACAAC+AGG | - | chr7_2:8270046-8270065 | Msa1047380:intron | 35.0% | |
! | AAAGAGGTTTTACAATGGGA+GGG | + | chr7_2:8270197-8270216 | None:intergenic | 35.0% |
! | TAAAGAGGTTTTACAATGGG+AGG | + | chr7_2:8270198-8270217 | None:intergenic | 35.0% |
TGAGAAATGTTATCGACCTT+AGG | - | chr7_2:8270233-8270252 | Msa1047380:intron | 35.0% | |
ATGCTAACATGATCATCCTA+AGG | + | chr7_2:8270252-8270271 | None:intergenic | 35.0% | |
ACAGGTCCAAACAAAAAACA+TGG | + | chr7_2:8270297-8270316 | None:intergenic | 35.0% | |
GCCTAGAAATGGAATAACTT+TGG | + | chr7_2:8270385-8270404 | None:intergenic | 35.0% | |
GTTCAAACTGGTATCTTATC+TGG | - | chr7_2:8270513-8270532 | Msa1047380:intron | 35.0% | |
ATGAAGTTTACAGACAAGGA+TGG | - | chr7_2:8270649-8270668 | Msa1047380:intron | 35.0% | |
ATGTACCTGCACATTAAAGA+TGG | + | chr7_2:8270993-8271012 | None:intergenic | 35.0% | |
CAAACCTAATGTGTATCCAA+GGG | + | chr7_2:8271054-8271073 | None:intergenic | 35.0% | |
ACATTAGGTTTGGCAATTCT+AGG | - | chr7_2:8271062-8271081 | Msa1047380:CDS | 35.0% | |
AGACAACTTGGGTACTTAAA+GGG | + | chr7_2:8271119-8271138 | None:intergenic | 35.0% | |
TAGACAACTTGGGTACTTAA+AGG | + | chr7_2:8271120-8271139 | None:intergenic | 35.0% | |
ATCAACTACATCTAAAGGAC+GGG | + | chr7_2:8271144-8271163 | None:intergenic | 35.0% | |
CATCAACTACATCTAAAGGA+CGG | + | chr7_2:8271145-8271164 | None:intergenic | 35.0% | |
TTCTAGGCCCTGAATATTAT+TGG | + | chr7_2:8271246-8271265 | None:intergenic | 35.0% | |
CTTGCATAATCATCAGTTGT+AGG | + | chr7_2:8271286-8271305 | None:intergenic | 35.0% | |
CTGATGATTATGCAAGATTC+TGG | - | chr7_2:8271290-8271309 | Msa1047380:five_prime_UTR | 35.0% | |
! | GATTTACGAACGCGTTTTTG+AGG | + | chr7_2:8265251-8265270 | None:intergenic | 40.0% |
TCGTTCCTCATTCTTCCAAA+CGG | - | chr7_2:8265288-8265307 | Msa1047380:exon | 40.0% | |
TTCTTCCGTTTGGAAGAATG+AGG | + | chr7_2:8265296-8265315 | None:intergenic | 40.0% | |
!! | TTGTTTGGCTTTCTTCCGTT+TGG | + | chr7_2:8265306-8265325 | None:intergenic | 40.0% |
GAAGAAAGCCAAACAATCTC+CGG | - | chr7_2:8265310-8265329 | Msa1047380:CDS | 40.0% | |
TTCTTCAACCGGAGATTGTT+TGG | + | chr7_2:8265321-8265340 | None:intergenic | 40.0% | |
GAAACCAGTTCTTCTTCAAC+CGG | + | chr7_2:8265332-8265351 | None:intergenic | 40.0% | |
! | TTCTTTTGTGCTTCATCAGC+CGG | + | chr7_2:8265434-8265453 | None:intergenic | 40.0% |
! | GTTTTGTAGTGAATCGAGTG+AGG | - | chr7_2:8265629-8265648 | Msa1047380:intron | 40.0% |
GAGTGAGGATGAAAGTTTGA+AGG | - | chr7_2:8265644-8265663 | Msa1047380:intron | 40.0% | |
! | TGGGATTTTATATCAGCTGG+AGG | - | chr7_2:8265698-8265717 | Msa1047380:intron | 40.0% |
! | GGAGGATAATGCTTTTGTCA+AGG | - | chr7_2:8265716-8265735 | Msa1047380:intron | 40.0% |
! | TTCATTTCGCGAACGTTTTG+TGG | + | chr7_2:8266134-8266153 | None:intergenic | 40.0% |
! | CAGTAAAAATTTTGCCTGGC+CGG | - | chr7_2:8266161-8266180 | Msa1047380:intron | 40.0% |
GGACTACATTGCTAAGATTG+TGG | - | chr7_2:8266544-8266563 | Msa1047380:intron | 40.0% | |
TTCGGCTCTGTAAAACCATT+GGG | + | chr7_2:8266609-8266628 | None:intergenic | 40.0% | |
!! | TTGGGTTGCTTTGCTGTTTA+TGG | - | chr7_2:8266670-8266689 | Msa1047380:CDS | 40.0% |
TGATTTGAATGTGTGTGTGC+AGG | - | chr7_2:8266709-8266728 | Msa1047380:intron | 40.0% | |
! | CTACATGAAGCACTTACATC+AGG | + | chr7_2:8266848-8266867 | None:intergenic | 40.0% |
TTTGGCAGCTGTATCAATCA+GGG | + | chr7_2:8267127-8267146 | None:intergenic | 40.0% | |
! | TTTTGGCAGCTGTATCAATC+AGG | + | chr7_2:8267128-8267147 | None:intergenic | 40.0% |
TTTATCAGCTGCATGGACAT+TGG | + | chr7_2:8267190-8267209 | None:intergenic | 40.0% | |
CCATGCAGCTGATAAAAATG+CGG | - | chr7_2:8267194-8267213 | Msa1047380:intron | 40.0% | |
AAGAATGTAATAGGCCTGAG+TGG | - | chr7_2:8267241-8267260 | Msa1047380:intron | 40.0% | |
AAATCCAGTAAAGTCCACTC+AGG | + | chr7_2:8267258-8267277 | None:intergenic | 40.0% | |
CAAAACGTACGTGAGTTTCT+GGG | + | chr7_2:8267505-8267524 | None:intergenic | 40.0% | |
!! | CCTGGTTTTTCATCTTCGTT+GGG | + | chr7_2:8267844-8267863 | None:intergenic | 40.0% |
!! | TCCTGGTTTTTCATCTTCGT+TGG | + | chr7_2:8267845-8267864 | None:intergenic | 40.0% |
!! | CCTACTCTGAAATATAGTCC+TGG | + | chr7_2:8267862-8267881 | None:intergenic | 40.0% |
CCAGGACTATATTTCAGAGT+AGG | - | chr7_2:8267859-8267878 | Msa1047380:CDS | 40.0% | |
! | AATCTTTCAGGTGCAATGGA+AGG | - | chr7_2:8267959-8267978 | Msa1047380:CDS | 40.0% |
! | ATCTTTCAGGTGCAATGGAA+GGG | - | chr7_2:8267960-8267979 | Msa1047380:CDS | 40.0% |
ATATACCTCAAGCCCTCAAT+GGG | + | chr7_2:8268014-8268033 | None:intergenic | 40.0% | |
AATATACCTCAAGCCCTCAA+TGG | + | chr7_2:8268015-8268034 | None:intergenic | 40.0% | |
ACCATTAGAGGTGAAAGAAG+GGG | + | chr7_2:8268256-8268275 | None:intergenic | 40.0% | |
GTACTACTTCATGCTTGTCT+AGG | - | chr7_2:8268309-8268328 | Msa1047380:intron | 40.0% | |
!! | GGCCAAGCTGATTTTATTTG+TGG | - | chr7_2:8268331-8268350 | Msa1047380:intron | 40.0% |
AAACCACTAACACCTTGACA+AGG | + | chr7_2:8268364-8268383 | None:intergenic | 40.0% | |
TTAGTGGTTTCAATCGCTTC+AGG | - | chr7_2:8268374-8268393 | Msa1047380:intron | 40.0% | |
CAGGAACAAAAATGCTCCAT+TGG | - | chr7_2:8268393-8268412 | Msa1047380:intron | 40.0% | |
GAACAAAAATGCTCCATTGG+AGG | - | chr7_2:8268396-8268415 | Msa1047380:intron | 40.0% | |
GAAGCCTAAGTATGTTCTCA+TGG | - | chr7_2:8268468-8268487 | Msa1047380:CDS | 40.0% | |
!! | AAATTTGCTGGTGGGTTTCT+GGG | - | chr7_2:8268511-8268530 | Msa1047380:intron | 40.0% |
GATAATTCATGGCCACTAGA+CGG | + | chr7_2:8268552-8268571 | None:intergenic | 40.0% | |
TGGCCATGAATTATCAAGCT+CGG | - | chr7_2:8268557-8268576 | Msa1047380:intron | 40.0% | |
! | CATCCGAGCTTGATAATTCA+TGG | + | chr7_2:8268563-8268582 | None:intergenic | 40.0% |
CATGAATTATCAAGCTCGGA+TGG | - | chr7_2:8268561-8268580 | Msa1047380:intron | 40.0% | |
CATATGGCCTTCCTCAATTT+CGG | - | chr7_2:8268602-8268621 | Msa1047380:CDS | 40.0% | |
AAAACACGCATCCGAAATTG+AGG | + | chr7_2:8268616-8268635 | None:intergenic | 40.0% | |
! | TTCGGATGCGTGTTTTTCTT+TGG | - | chr7_2:8268620-8268639 | Msa1047380:CDS | 40.0% |
! | TCGGATGCGTGTTTTTCTTT+GGG | - | chr7_2:8268621-8268640 | Msa1047380:CDS | 40.0% |
! | GAGCTCTAACTACTGAAGTA+AGG | - | chr7_2:8268644-8268663 | Msa1047380:CDS | 40.0% |
!! | TGAGTTGGTAACGGATATGA+GGG | + | chr7_2:8268776-8268795 | None:intergenic | 40.0% |
!! | ATGAGTTGGTAACGGATATG+AGG | + | chr7_2:8268777-8268796 | None:intergenic | 40.0% |
ATATCCGTTACCAACTCATG+AGG | - | chr7_2:8268778-8268797 | Msa1047380:CDS | 40.0% | |
!! | TCAACCTCATGAGTTGGTAA+CGG | + | chr7_2:8268785-8268804 | None:intergenic | 40.0% |
! | CAGCTGACACTTTTCATTAG+TGG | + | chr7_2:8268966-8268985 | None:intergenic | 40.0% |
!! | CACTAATGAAAAGTGTCAGC+TGG | - | chr7_2:8268964-8268983 | Msa1047380:CDS | 40.0% |
AGCAAAAACAACATACCGGT+GGG | + | chr7_2:8269027-8269046 | None:intergenic | 40.0% | |
AGCGATGATGAAAAGAGCTA+CGG | - | chr7_2:8269146-8269165 | Msa1047380:CDS | 40.0% | |
TGATCATACAGCATACCACT+TGG | + | chr7_2:8269584-8269603 | None:intergenic | 40.0% | |
GCAAACTCTCTCATAGTCAT+CGG | + | chr7_2:8269627-8269646 | None:intergenic | 40.0% | |
AGATATGGAACCTTCTCCTT+TGG | + | chr7_2:8269656-8269675 | None:intergenic | 40.0% | |
! | TTGTGCTTGCTTGCCTTTTT+AGG | - | chr7_2:8269728-8269747 | Msa1047380:intron | 40.0% |
! | TGTGCTTGCTTGCCTTTTTA+GGG | - | chr7_2:8269729-8269748 | Msa1047380:intron | 40.0% |
!! | TTTTTAGGGGGCAAACTTCA+GGG | - | chr7_2:8269743-8269762 | Msa1047380:intron | 40.0% |
! | TCTAAAATCTGGAAAGCCGT+TGG | - | chr7_2:8269830-8269849 | Msa1047380:intron | 40.0% |
TTGTGTCCACTGTTGTAACA+AGG | - | chr7_2:8270097-8270116 | Msa1047380:intron | 40.0% | |
TGTGTCCACTGTTGTAACAA+GGG | - | chr7_2:8270098-8270117 | Msa1047380:intron | 40.0% | |
CGAATAACAACCTGGTTATG+AGG | + | chr7_2:8270129-8270148 | None:intergenic | 40.0% | |
CACAACTTCGAATAACAACC+TGG | + | chr7_2:8270137-8270156 | None:intergenic | 40.0% | |
GAATGCTAAGAACTCTGTCT+TGG | + | chr7_2:8270423-8270442 | None:intergenic | 40.0% | |
TTAGCATTCGAGAGAATGCA+AGG | - | chr7_2:8270434-8270453 | Msa1047380:intron | 40.0% | |
ACACATACCTCTGTTTGACA+GGG | + | chr7_2:8270495-8270514 | None:intergenic | 40.0% | |
AACACATACCTCTGTTTGAC+AGG | + | chr7_2:8270496-8270515 | None:intergenic | 40.0% | |
! | ACAGAGGTATGTGTTCAAAC+TGG | - | chr7_2:8270501-8270520 | Msa1047380:intron | 40.0% |
ACTGCTCAATAACTCTCCTA+AGG | - | chr7_2:8270793-8270812 | Msa1047380:CDS | 40.0% | |
CTGCTCAATAACTCTCCTAA+GGG | - | chr7_2:8270794-8270813 | Msa1047380:CDS | 40.0% | |
TAATGTGTATCCAAGGGCAA+GGG | + | chr7_2:8271048-8271067 | None:intergenic | 40.0% | |
CCAAACCTAATGTGTATCCA+AGG | + | chr7_2:8271055-8271074 | None:intergenic | 40.0% | |
CCTTGGATACACATTAGGTT+TGG | - | chr7_2:8271052-8271071 | Msa1047380:CDS | 40.0% | |
GACAACTTGGGTACTTAAAG+GGG | + | chr7_2:8271118-8271137 | None:intergenic | 40.0% | |
! | AGGAACGACTTCGTCTTGTT+TGG | + | chr7_2:8265276-8265295 | None:intergenic | 45.0% |
ATCTCCGGTTGAAGAAGAAC+TGG | - | chr7_2:8265325-8265344 | Msa1047380:CDS | 45.0% | |
CTTCGTCGGAGAACTTATTC+CGG | - | chr7_2:8265412-8265431 | Msa1047380:CDS | 45.0% | |
CACAAAAGAAATGGCCTCAC+CGG | - | chr7_2:8265444-8265463 | Msa1047380:CDS | 45.0% | |
CTCACTCGTTCTTAGTGTAC+CGG | + | chr7_2:8265466-8265485 | None:intergenic | 45.0% | |
GTTTCACTATCGTGAAGCGA+AGG | - | chr7_2:8265671-8265690 | Msa1047380:intron | 45.0% | |
TATCGTGAAGCGAAGGTTGA+TGG | - | chr7_2:8265678-8265697 | Msa1047380:intron | 45.0% | |
! | ATCGTGAAGCGAAGGTTGAT+GGG | - | chr7_2:8265679-8265698 | Msa1047380:intron | 45.0% |
! | CGGCCAGGCAAAATTTTTAC+TGG | + | chr7_2:8266163-8266182 | None:intergenic | 45.0% |
AGCGAATGTGTATTCGCGAT+TGG | + | chr7_2:8266286-8266305 | None:intergenic | 45.0% | |
! | GATGAATGTTGTTTAGGGGG+AGG | - | chr7_2:8266511-8266530 | Msa1047380:CDS | 45.0% |
! | AATGTTGTTTAGGGGGAGGA+AGG | - | chr7_2:8266515-8266534 | Msa1047380:CDS | 45.0% |
CTTCGGCTCTGTAAAACCAT+TGG | + | chr7_2:8266610-8266629 | None:intergenic | 45.0% | |
! | GTTTTACAGAGCCGAAGACA+CGG | - | chr7_2:8266613-8266632 | Msa1047380:intron | 45.0% |
TGTGTGTGTGCAGGTGATTA+AGG | - | chr7_2:8266718-8266737 | Msa1047380:intron | 45.0% | |
TGCAGGTGATTAAGGACCAT+GGG | - | chr7_2:8266726-8266745 | Msa1047380:intron | 45.0% | |
! | CCGCATTTTTATCAGCTGCA+TGG | + | chr7_2:8267197-8267216 | None:intergenic | 45.0% |
CTGGATTTGTATTCTGGGTG+TGG | - | chr7_2:8267270-8267289 | Msa1047380:CDS | 45.0% | |
!! | ATGTCCACTGGTCTTTGCTT+TGG | - | chr7_2:8267297-8267316 | Msa1047380:CDS | 45.0% |
CCAAAACGTACGTGAGTTTC+TGG | + | chr7_2:8267506-8267525 | None:intergenic | 45.0% | |
! | CCAGAAACTCACGTACGTTT+TGG | - | chr7_2:8267503-8267522 | Msa1047380:CDS | 45.0% |
AATTCAGGTGAGGAATGAGC+CGG | - | chr7_2:8267621-8267640 | Msa1047380:CDS | 45.0% | |
TTGAATGCTGGTGAAGAAGC+TGG | - | chr7_2:8267730-8267749 | Msa1047380:intron | 45.0% | |
AGATGATTCACCTGACTCTG+AGG | - | chr7_2:8267777-8267796 | Msa1047380:intron | 45.0% | |
!! | ACCTGACTCTGAGGTATTTG+AGG | - | chr7_2:8267786-8267805 | Msa1047380:intron | 45.0% |
ACCTCAAATACCTCAGAGTC+AGG | + | chr7_2:8267790-8267809 | None:intergenic | 45.0% | |
CCCAACGAAGATGAAAAACC+AGG | - | chr7_2:8267841-8267860 | Msa1047380:CDS | 45.0% | |
ACCCCTTCTTTCACCTCTAA+TGG | - | chr7_2:8268252-8268271 | Msa1047380:intron | 45.0% | |
!! | GAAATTTGCTGGTGGGTTTC+TGG | - | chr7_2:8268510-8268529 | Msa1047380:intron | 45.0% |
!! | AATTTGCTGGTGGGTTTCTG+GGG | - | chr7_2:8268512-8268531 | Msa1047380:intron | 45.0% |
! | CGGATGCGTGTTTTTCTTTG+GGG | - | chr7_2:8268622-8268641 | Msa1047380:CDS | 45.0% |
CTGGATTCAACCTCATGAGT+TGG | + | chr7_2:8268791-8268810 | None:intergenic | 45.0% | |
! | TGGCCAAGGCATTATACCTT+GGG | - | chr7_2:8268984-8269003 | Msa1047380:CDS | 45.0% |
GAGCAAAAACAACATACCGG+TGG | + | chr7_2:8269028-8269047 | None:intergenic | 45.0% | |
GCGATGATGAAAAGAGCTAC+GGG | - | chr7_2:8269147-8269166 | Msa1047380:CDS | 45.0% | |
ATGCAGTTCATATATGCGGC+CGG | + | chr7_2:8269384-8269403 | None:intergenic | 45.0% | |
GCCGAATAATTCACCATCTC+TGG | + | chr7_2:8269545-8269564 | None:intergenic | 45.0% | |
GAGAGTTTGCCACATTCCAA+AGG | - | chr7_2:8269637-8269656 | Msa1047380:CDS | 45.0% | |
TTGCCACATTCCAAAGGAGA+AGG | - | chr7_2:8269643-8269662 | Msa1047380:CDS | 45.0% | |
!! | GAACCTTCTCCTTTGGAATG+TGG | + | chr7_2:8269649-8269668 | None:intergenic | 45.0% |
! | GTGCTTGCTTGCCTTTTTAG+GGG | - | chr7_2:8269730-8269749 | Msa1047380:intron | 45.0% |
!! | TGCTTGCTTGCCTTTTTAGG+GGG | - | chr7_2:8269731-8269750 | Msa1047380:intron | 45.0% |
CTGAAGTTTGCCCCCTAAAA+AGG | + | chr7_2:8269744-8269763 | None:intergenic | 45.0% | |
!! | CTTTTTAGGGGGCAAACTTC+AGG | - | chr7_2:8269742-8269761 | Msa1047380:intron | 45.0% |
GCTGAATACAACAGGCCATT+TGG | - | chr7_2:8270054-8270073 | Msa1047380:intron | 45.0% | |
AACAACCTGGTTATGAGGCT+CGG | + | chr7_2:8270124-8270143 | None:intergenic | 45.0% | |
GTTTGGACCTGTTGTGTAAG+TGG | - | chr7_2:8270305-8270324 | Msa1047380:intron | 45.0% | |
! | AGTACTGCCACTTACACAAC+AGG | + | chr7_2:8270315-8270334 | None:intergenic | 45.0% |
GATGGAGAAGAGCCTAGAAA+TGG | + | chr7_2:8270396-8270415 | None:intergenic | 45.0% | |
CTAAGAACTCTGTCTTGGTC+TGG | + | chr7_2:8270418-8270437 | None:intergenic | 45.0% | |
CCACAAAGCTTATAGCAGTC+TGG | + | chr7_2:8270472-8270491 | None:intergenic | 45.0% | |
CCAGACTGCTATAAGCTTTG+TGG | - | chr7_2:8270469-8270488 | Msa1047380:intron | 45.0% | |
AAATCCTGGACTGATCCCTT+AGG | + | chr7_2:8270812-8270831 | None:intergenic | 45.0% | |
! | GGGATCAGTCCAGGATTTTT+AGG | - | chr7_2:8270814-8270833 | Msa1047380:intron | 45.0% |
ATGTGCAGGTACATGCAAGT+TGG | - | chr7_2:8270999-8271018 | Msa1047380:CDS | 45.0% | |
CTAATGTGTATCCAAGGGCA+AGG | + | chr7_2:8271049-8271068 | None:intergenic | 45.0% | |
CTTGCCCTTGGATACACATT+AGG | - | chr7_2:8271047-8271066 | Msa1047380:CDS | 45.0% | |
!! | ATTCTAGGACTCTCCGATGA+CGG | - | chr7_2:8271077-8271096 | Msa1047380:CDS | 45.0% |
!! | TTAAAGGGGAGCGTTGTCAA+AGG | + | chr7_2:8271104-8271123 | None:intergenic | 45.0% |
ACTGAGCGGTTCAACAAGTG+CGG | - | chr7_2:8265067-8265086 | Msa1047380:three_prime_UTR | 50.0% | |
! | TCGTTCTTAGTGTACCGGTG+AGG | + | chr7_2:8265461-8265480 | None:intergenic | 50.0% |
! | TTTTGCCTGGCCGGAAATCA+TGG | - | chr7_2:8266170-8266189 | Msa1047380:intron | 50.0% |
TTTGCCTGGCCGGAAATCAT+GGG | - | chr7_2:8266171-8266190 | Msa1047380:intron | 50.0% | |
! | CGATTGGTTCCCGAATGATG+TGG | + | chr7_2:8266270-8266289 | None:intergenic | 50.0% |
TTAGGGGGAGGAAGGAAAAG+AGG | - | chr7_2:8266523-8266542 | Msa1047380:intron | 50.0% | |
GTGCAGGTGATTAAGGACCA+TGG | - | chr7_2:8266725-8266744 | Msa1047380:intron | 50.0% | |
! | TAGGCCTGAGTGGACTTTAC+TGG | - | chr7_2:8267251-8267270 | Msa1047380:intron | 50.0% |
TGCTCCAAAGCAAAGACCAG+TGG | + | chr7_2:8267304-8267323 | None:intergenic | 50.0% | |
GAAGAAGCTGGTGAAGAAGC+TGG | - | chr7_2:8267742-8267761 | Msa1047380:intron | 50.0% | |
GGGCTCCCATGTATCATAAC+TGG | + | chr7_2:8267994-8268013 | None:intergenic | 50.0% | |
TGATACATGGGAGCCCATTG+AGG | - | chr7_2:8267998-8268017 | Msa1047380:CDS | 50.0% | |
GATACATGGGAGCCCATTGA+GGG | - | chr7_2:8267999-8268018 | Msa1047380:CDS | 50.0% | |
GTGGTGAGACTTACAGGAAG+AGG | + | chr7_2:8268209-8268228 | None:intergenic | 50.0% | |
TGAGGAGTGGTGAGACTTAC+AGG | + | chr7_2:8268215-8268234 | None:intergenic | 50.0% | |
CCACTAACACCTTGACAAGG+TGG | + | chr7_2:8268361-8268380 | None:intergenic | 50.0% | |
! | CCACCTTGTCAAGGTGTTAG+TGG | - | chr7_2:8268358-8268377 | Msa1047380:intron | 50.0% |
!! | TTTCTGGGGCGTTATGCTGT+AGG | - | chr7_2:8268526-8268545 | Msa1047380:intron | 50.0% |
TTATGCTGTAGGCCGTCTAG+TGG | - | chr7_2:8268537-8268556 | Msa1047380:intron | 50.0% | |
TCAAGCTCGGATGGGAATGA+TGG | - | chr7_2:8268570-8268589 | Msa1047380:intron | 50.0% | |
ATGATGGCTGCAGGGTCATA+TGG | - | chr7_2:8268586-8268605 | Msa1047380:intron | 50.0% | |
CACGCATCCGAAATTGAGGA+AGG | + | chr7_2:8268612-8268631 | None:intergenic | 50.0% | |
CTCAGTAGGGATGACTGATC+TGG | + | chr7_2:8268810-8268829 | None:intergenic | 50.0% | |
!! | TGAAAAGTGTCAGCTGGCCA+AGG | - | chr7_2:8268970-8268989 | Msa1047380:CDS | 50.0% |
! | CTGGCCAAGGCATTATACCT+TGG | - | chr7_2:8268983-8269002 | Msa1047380:CDS | 50.0% |
! | GGCCAAGGCATTATACCTTG+GGG | - | chr7_2:8268985-8269004 | Msa1047380:CDS | 50.0% |
GTCCCCAAGGTATAATGCCT+TGG | + | chr7_2:8268990-8269009 | None:intergenic | 50.0% | |
GATCATCAATTGCGTCCCCA+AGG | + | chr7_2:8269003-8269022 | None:intergenic | 50.0% | |
! | CGCAATTGATGATCTCCCAC+CGG | - | chr7_2:8269009-8269028 | Msa1047380:intron | 50.0% |
GACTCTCAAAGTGCACCAAG+TGG | - | chr7_2:8269566-8269585 | Msa1047380:intron | 50.0% | |
CTTTAACTAGCACACCCTCG+AGG | + | chr7_2:8269770-8269789 | None:intergenic | 50.0% | |
! | ACAGGCCATTTGGTCGACTT+TGG | - | chr7_2:8270064-8270083 | Msa1047380:intron | 50.0% |
! | GCCATTTGGTCGACTTTGGT+GGG | - | chr7_2:8270068-8270087 | Msa1047380:intron | 50.0% |
TCCCACCAAAGTCGACCAAA+TGG | + | chr7_2:8270072-8270091 | None:intergenic | 50.0% | |
GAGGGTAGCATAAGTGGCAT+TGG | + | chr7_2:8270179-8270198 | None:intergenic | 50.0% | |
CAATGGGAGGGTAGCATAAG+TGG | + | chr7_2:8270185-8270204 | None:intergenic | 50.0% | |
GAACTCTGTCTTGGTCTGGA+TGG | + | chr7_2:8270414-8270433 | None:intergenic | 50.0% | |
CGAGAGAATGCAAGGCTACA+AGG | - | chr7_2:8270442-8270461 | Msa1047380:intron | 50.0% | |
TTTGTGGCCCTGTCAAACAG+AGG | - | chr7_2:8270485-8270504 | Msa1047380:intron | 50.0% | |
CGTTGTCAAAGGACCGTCAT+CGG | + | chr7_2:8271093-8271112 | None:intergenic | 50.0% | |
!! | AAGGACGGGCTAGACAACTT+GGG | + | chr7_2:8271130-8271149 | None:intergenic | 50.0% |
!! | AAAGGACGGGCTAGACAACT+TGG | + | chr7_2:8271131-8271150 | None:intergenic | 50.0% |
CTGAGCGGTTCAACAAGTGC+GGG | - | chr7_2:8265068-8265087 | Msa1047380:three_prime_UTR | 55.0% | |
TCCGACGATGCATGCTTCGT+CGG | - | chr7_2:8265398-8265417 | Msa1047380:CDS | 55.0% | |
TCCGACGAAGCATGCATCGT+CGG | + | chr7_2:8265402-8265421 | None:intergenic | 55.0% | |
TTGCCTGGCCGGAAATCATG+GGG | - | chr7_2:8266172-8266191 | Msa1047380:intron | 55.0% | |
ACCCACCACCCCATGATTTC+CGG | + | chr7_2:8266183-8266202 | None:intergenic | 55.0% | |
TGACTTGAAGAGATGGGCCG+TGG | - | chr7_2:8267439-8267458 | Msa1047380:intron | 55.0% | |
GGATGGGAATGATGGCTGCA+GGG | - | chr7_2:8268578-8268597 | Msa1047380:intron | 55.0% | |
GCAAACTTCAGGGACCTCGA+GGG | - | chr7_2:8269753-8269772 | Msa1047380:intron | 55.0% | |
! | GGCCATTTGGTCGACTTTGG+TGG | - | chr7_2:8270067-8270086 | Msa1047380:intron | 55.0% |
CTCGGCCCTTGTTACAACAG+TGG | + | chr7_2:8270106-8270125 | None:intergenic | 55.0% | |
CTCTCCTAAGGGATCAGTCC+AGG | - | chr7_2:8270805-8270824 | Msa1047380:CDS | 55.0% | |
TATCCAAGGGCAAGGGCAAC+AGG | + | chr7_2:8271041-8271060 | None:intergenic | 55.0% | |
GCCGGAAATCATGGGGTGGT+GGG | - | chr7_2:8266179-8266198 | Msa1047380:intron | 60.0% | |
GGGTGTGGAGCTATGTCCAC+TGG | - | chr7_2:8267285-8267304 | Msa1047380:CDS | 60.0% | |
!! | TGTGGTGGGCCACCTTGTCA+AGG | - | chr7_2:8268349-8268368 | Msa1047380:intron | 60.0% |
CGGATGGGAATGATGGCTGC+AGG | - | chr7_2:8268577-8268596 | Msa1047380:intron | 60.0% | |
GGCAAACTTCAGGGACCTCG+AGG | - | chr7_2:8269752-8269771 | Msa1047380:intron | 60.0% | |
AAGGGCCGAGCCTCATAACC+AGG | - | chr7_2:8270116-8270135 | Msa1047380:intron | 60.0% | |
GTTCCTGTTGCCCTTGCCCT+TGG | - | chr7_2:8271035-8271054 | Msa1047380:CDS | 60.0% | |
CCACCCCATGATTTCCGGCC+AGG | + | chr7_2:8266178-8266197 | None:intergenic | 65.0% | |
CCTGGCCGGAAATCATGGGG+TGG | - | chr7_2:8266175-8266194 | Msa1047380:intron | 65.0% | |
GGCCGGAAATCATGGGGTGG+TGG | - | chr7_2:8266178-8266197 | Msa1047380:intron | 65.0% | |
GGGAGCCCATTGAGGGCTTG+AGG | - | chr7_2:8268006-8268025 | Msa1047380:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 8265062 | 8271408 | 8265062 | ID=Msa1047380;Name=Msa1047380 |
chr7_2 | mRNA | 8265062 | 8271408 | 8265062 | ID=Msa1047380-mRNA-1;Parent=Msa1047380;Name=Msa1047380-mRNA-1;_AED=0.14;_eAED=0.14;_QI=183|0.84|0.85|1|0.94|0.95|20|227|859 |
chr7_2 | exon | 8265062 | 8265463 | 8265062 | ID=Msa1047380-mRNA-1:exon:2152;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8265964 | 8266067 | 8265964 | ID=Msa1047380-mRNA-1:exon:2151;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8266333 | 8266429 | 8266333 | ID=Msa1047380-mRNA-1:exon:2150;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8266494 | 8266537 | 8266494 | ID=Msa1047380-mRNA-1:exon:2149;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8266619 | 8266720 | 8266619 | ID=Msa1047380-mRNA-1:exon:2148;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8266776 | 8266924 | 8266776 | ID=Msa1047380-mRNA-1:exon:2147;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8267252 | 8267339 | 8267252 | ID=Msa1047380-mRNA-1:exon:2146;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8267440 | 8267526 | 8267440 | ID=Msa1047380-mRNA-1:exon:2145;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8267611 | 8267703 | 8267611 | ID=Msa1047380-mRNA-1:exon:2144;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8267810 | 8268139 | 8267810 | ID=Msa1047380-mRNA-1:exon:2143;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8268256 | 8268322 | 8268256 | ID=Msa1047380-mRNA-1:exon:2142;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8268443 | 8268501 | 8268443 | ID=Msa1047380-mRNA-1:exon:2141;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8268594 | 8268842 | 8268594 | ID=Msa1047380-mRNA-1:exon:2140;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8268956 | 8269021 | 8268956 | ID=Msa1047380-mRNA-1:exon:2139;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8269120 | 8269334 | 8269120 | ID=Msa1047380-mRNA-1:exon:2138;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8269436 | 8269526 | 8269436 | ID=Msa1047380-mRNA-1:exon:2137;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8269620 | 8269739 | 8269620 | ID=Msa1047380-mRNA-1:exon:2136;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8269836 | 8269943 | 8269836 | ID=Msa1047380-mRNA-1:exon:2135;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8270733 | 8270832 | 8270733 | ID=Msa1047380-mRNA-1:exon:2134;Parent=Msa1047380-mRNA-1 |
chr7_2 | exon | 8270990 | 8271408 | 8270990 | ID=Msa1047380-mRNA-1:exon:2133;Parent=Msa1047380-mRNA-1 |
chr7_2 | five_prime_UTR | 8271226 | 8271408 | 8271226 | ID=Msa1047380-mRNA-1:five_prime_utr;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8270990 | 8271225 | 8270990 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8270733 | 8270832 | 8270733 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8269836 | 8269943 | 8269836 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8269620 | 8269739 | 8269620 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8269436 | 8269526 | 8269436 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8269120 | 8269334 | 8269120 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8268956 | 8269021 | 8268956 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8268594 | 8268842 | 8268594 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8268443 | 8268501 | 8268443 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8268256 | 8268322 | 8268256 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8267810 | 8268139 | 8267810 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8267611 | 8267703 | 8267611 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8267440 | 8267526 | 8267440 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8267252 | 8267339 | 8267252 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8266776 | 8266924 | 8266776 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8266619 | 8266720 | 8266619 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8266494 | 8266537 | 8266494 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8266333 | 8266429 | 8266333 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8265964 | 8266067 | 8265964 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | CDS | 8265289 | 8265463 | 8265289 | ID=Msa1047380-mRNA-1:cds;Parent=Msa1047380-mRNA-1 |
chr7_2 | three_prime_UTR | 8265062 | 8265288 | 8265062 | ID=Msa1047380-mRNA-1:three_prime_utr;Parent=Msa1047380-mRNA-1 |
Gene Sequence |
Protein sequence |