Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344350 | XP_013469981.2 | 96.125 | 542 | 20 | 1 | 1 | 541 | 46 | 587 | 0.0 | 1085 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344350 | sp|Q84WT5|XYN5L_ARATH | 47.523 | 545 | 254 | 7 | 1 | 535 | 41 | 563 | 2.40e-172 | 502 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344350 | A0A396JV30 | 96.125 | 542 | 20 | 1 | 1 | 541 | 46 | 587 | 0.0 | 1085 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089450 | Msa1344350 | 0.964887 | 6.757026e-124 | -8.615850e-47 |
| Msa1344350 | Msa1414970 | -0.809194 | 2.134883e-50 | -8.615850e-47 |
| Msa1344350 | Msa1423270 | -0.842433 | 2.593962e-58 | -8.615850e-47 |
| Msa0716350 | Msa1344350 | -0.808401 | 3.153140e-50 | -8.615850e-47 |
| Msa0720000 | Msa1344350 | -0.824685 | 7.060197e-54 | -8.615850e-47 |
| Msa0841350 | Msa1344350 | -0.839565 | 1.468295e-57 | -8.615850e-47 |
| Msa0319720 | Msa1344350 | -0.804751 | 1.858665e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344350 | MtrunA17_Chr1g0207241 | 96.125 | 542 | 20 | 1 | 1 | 541 | 46 | 587 | 0.0 | 1085 |
| Msa1344350 | MtrunA17_Chr1g0207211 | 75.322 | 543 | 132 | 1 | 1 | 541 | 40 | 582 | 0.0 | 866 |
| Msa1344350 | MtrunA17_Chr1g0207201 | 77.004 | 474 | 109 | 0 | 68 | 541 | 1 | 474 | 0.0 | 780 |
| Msa1344350 | MtrunA17_Chr1g0207231 | 73.840 | 474 | 124 | 0 | 68 | 541 | 1 | 474 | 0.0 | 764 |
| Msa1344350 | MtrunA17_Chr7g0223191 | 49.518 | 519 | 258 | 3 | 1 | 519 | 5 | 519 | 0.0 | 528 |
| Msa1344350 | MtrunA17_Chr4g0037551 | 48.924 | 511 | 257 | 3 | 4 | 514 | 37 | 543 | 1.68e-177 | 512 |
| Msa1344350 | MtrunA17_Chr5g0421191 | 47.389 | 517 | 268 | 3 | 1 | 517 | 31 | 543 | 4.53e-175 | 506 |
| Msa1344350 | MtrunA17_Chr3g0145541 | 39.958 | 478 | 270 | 7 | 69 | 539 | 90 | 557 | 3.49e-112 | 344 |
| Msa1344350 | MtrunA17_Chr3g0135341 | 29.449 | 472 | 297 | 12 | 5 | 450 | 192 | 653 | 4.10e-60 | 211 |
| Msa1344350 | MtrunA17_Chr1g0151951 | 27.641 | 568 | 361 | 15 | 5 | 539 | 380 | 930 | 1.15e-57 | 207 |
| Msa1344350 | MtrunA17_Chr4g0068081 | 48.205 | 195 | 65 | 3 | 291 | 485 | 1 | 159 | 1.40e-51 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1344350 | AT4G33840.1 | 50.662 | 529 | 254 | 5 | 1 | 526 | 34 | 558 | 0.0 | 543 |
| Msa1344350 | AT4G33860.1 | 50.195 | 514 | 249 | 5 | 4 | 514 | 37 | 546 | 9.00e-174 | 503 |
| Msa1344350 | AT4G33830.1 | 48.393 | 529 | 265 | 6 | 1 | 526 | 35 | 558 | 2.24e-173 | 502 |
| Msa1344350 | AT4G33820.1 | 47.523 | 545 | 254 | 7 | 1 | 535 | 41 | 563 | 2.44e-173 | 502 |
| Msa1344350 | AT4G33810.1 | 47.514 | 543 | 256 | 7 | 1 | 535 | 1 | 522 | 1.65e-167 | 485 |
| Msa1344350 | AT4G33810.5 | 47.514 | 543 | 256 | 7 | 1 | 535 | 1 | 522 | 1.65e-167 | 485 |
| Msa1344350 | AT4G33810.2 | 47.514 | 543 | 256 | 7 | 1 | 535 | 41 | 562 | 7.06e-167 | 485 |
| Msa1344350 | AT4G33810.3 | 47.514 | 543 | 256 | 7 | 1 | 535 | 41 | 562 | 7.06e-167 | 485 |
| Msa1344350 | AT4G33810.4 | 47.514 | 543 | 256 | 7 | 1 | 535 | 41 | 562 | 7.06e-167 | 485 |
| Msa1344350 | AT2G14690.1 | 46.394 | 513 | 244 | 8 | 30 | 527 | 53 | 549 | 2.76e-160 | 468 |
| Msa1344350 | AT4G38650.1 | 40.329 | 486 | 272 | 8 | 64 | 540 | 85 | 561 | 2.65e-122 | 371 |
| Msa1344350 | AT4G38300.1 | 44.015 | 259 | 131 | 4 | 162 | 420 | 10 | 254 | 3.20e-72 | 232 |
| Msa1344350 | AT1G58370.1 | 29.661 | 472 | 291 | 12 | 9 | 450 | 366 | 826 | 1.42e-59 | 213 |
| Msa1344350 | AT1G10050.3 | 28.975 | 566 | 351 | 15 | 9 | 539 | 546 | 1095 | 1.84e-59 | 213 |
| Msa1344350 | AT1G10050.2 | 28.975 | 566 | 351 | 15 | 9 | 539 | 514 | 1063 | 1.89e-59 | 213 |
| Msa1344350 | AT1G10050.1 | 28.975 | 566 | 351 | 15 | 9 | 539 | 514 | 1063 | 1.89e-59 | 213 |
| Msa1344350 | AT1G58370.2 | 29.661 | 472 | 291 | 12 | 9 | 450 | 394 | 854 | 2.19e-59 | 212 |
| Msa1344350 | AT4G08160.1 | 29.878 | 492 | 318 | 13 | 42 | 515 | 245 | 727 | 1.47e-57 | 205 |
| Msa1344350 | AT4G08160.2 | 31.354 | 421 | 264 | 11 | 42 | 445 | 245 | 657 | 1.05e-56 | 201 |
Find 101 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAACCATTTACTAAAA+AGG | 0.196675 | tig0006806:+68072 | Msa1344350:CDS |
| ATAATCCAAGTGTGGAAATA+TGG | 0.243112 | tig0006806:+68035 | Msa1344350:CDS |
| GTAATATTGGATTTCCAATA+TGG | 0.244796 | tig0006806:+69167 | Msa1344350:CDS |
| GATAAATACTTAACCCATTC+AGG | 0.250247 | tig0006806:-68761 | None:intergenic |
| TTAGAATTTGCTAAAGATAA+TGG | 0.267266 | tig0006806:+68689 | Msa1344350:CDS |
| CTGGCTTCTGTGAGCCATAT+TGG | 0.278897 | tig0006806:-69181 | None:intergenic |
| CGCGGCTTTGCGCAATTCAT+CGG | 0.294861 | tig0006806:-68786 | None:intergenic |
| TATCCTCATAAAAGTGAAAA+TGG | 0.296065 | tig0006806:-68883 | None:intergenic |
| CCCTTTCAATGTTGTTGTCT+TGG | 0.298203 | tig0006806:-68108 | None:intergenic |
| GAATTGAATCTGTTGTTAAA+AGG | 0.302891 | tig0006806:+68816 | Msa1344350:CDS |
| CTTGTCCAGTTGGAGTAGTT+TGG | 0.315012 | tig0006806:-69464 | None:intergenic |
| GCAAATTCTAACATTGCATC+TGG | 0.318088 | tig0006806:-68677 | None:intergenic |
| CTATCTGCTTTGGCTGTATA+AGG | 0.325055 | tig0006806:-69522 | None:intergenic |
| ATAGAGGGTTGGACAGTATC+TGG | 0.325119 | tig0006806:+67215 | Msa1344350:CDS |
| TTGGCTGGCCACTTGCAAAA+TGG | 0.329470 | tig0006806:-69108 | None:intergenic |
| AGGAATCAATATACCTGATT+TGG | 0.339675 | tig0006806:-69217 | None:intergenic |
| AAGGTGGTTCTTATTTATTT+AGG | 0.357589 | tig0006806:-69685 | None:intergenic |
| AAGCACAGATTACATATATA+AGG | 0.360349 | tig0006806:-69704 | None:intergenic |
| ACAAAGGCAGATTTCCCATT+TGG | 0.372177 | tig0006806:+68515 | Msa1344350:CDS |
| CAAGGGATTATAATGTTTGC+TGG | 0.384553 | tig0006806:+69393 | Msa1344350:CDS |
| GACCTCATGTAAGCAAGATT+TGG | 0.386824 | tig0006806:-69127 | None:intergenic |
| ATGGCTCACAGAAGCCAGTT+TGG | 0.392362 | tig0006806:+69186 | Msa1344350:CDS |
| ATCTTGACACAAACCATTCC+TGG | 0.399462 | tig0006806:-68577 | None:intergenic |
| AATTCCTCTACTATCTGCTT+TGG | 0.405314 | tig0006806:-69532 | None:intergenic |
| TATAGTACAGAGAAAATTCC+AGG | 0.407018 | tig0006806:+68635 | Msa1344350:CDS |
| GCGGCTTTGCGCAATTCATC+GGG | 0.408559 | tig0006806:-68785 | None:intergenic |
| TCTGTTGTATTTAAAACAAA+TGG | 0.411591 | tig0006806:+67528 | Msa1344350:CDS |
| ATTATAATCCCTTGAACTGC+TGG | 0.416207 | tig0006806:-69384 | None:intergenic |
| GGACAATTTGATTCTTGAAT+GGG | 0.428361 | tig0006806:+69491 | Msa1344350:CDS |
| AATTTCCAAACTACTCCAAC+TGG | 0.432243 | tig0006806:+69459 | Msa1344350:CDS |
| GAACCTCAGAGAGCACAATA+TGG | 0.433972 | tig0006806:+67155 | Msa1344350:CDS |
| CTTGAGGAGATTATGCAATC+TGG | 0.434202 | tig0006806:+69046 | Msa1344350:CDS |
| TATAATACTATTGAATATAG+TGG | 0.435039 | tig0006806:+68986 | Msa1344350:CDS |
| TGGACAATTTGATTCTTGAA+TGG | 0.435532 | tig0006806:+69490 | Msa1344350:CDS |
| TACTCTCATCCAGCAGTTCA+AGG | 0.446618 | tig0006806:+69375 | Msa1344350:CDS |
| TTTGGATCCTCAGCCAAATC+AGG | 0.451900 | tig0006806:+69204 | Msa1344350:CDS |
| TTGATTCTTGAATGGGGAAG+TGG | 0.457488 | tig0006806:+69498 | Msa1344350:CDS |
| TAATCCAAGTGTGGAAATAT+GGG | 0.461783 | tig0006806:+68036 | Msa1344350:CDS |
| TTTCATTTGCATTACTTACA+TGG | 0.462597 | tig0006806:-68457 | None:intergenic |
| CAAACAGTTCAGCTAGAGAA+AGG | 0.464706 | tig0006806:+67326 | Msa1344350:CDS |
| TGAATTTAAGTGTCAGGAAA+GGG | 0.466143 | tig0006806:+69628 | Msa1344350:CDS |
| ATTTGGCTGAGGATCCAAAC+TGG | 0.478667 | tig0006806:-69200 | None:intergenic |
| GCAGATTTCCCATTTGGATG+TGG | 0.480363 | tig0006806:+68521 | Msa1344350:CDS |
| TGGTTCATCCCACATCCAAA+TGG | 0.480525 | tig0006806:-68530 | None:intergenic |
| CAGATTTCCCATTTGGATGT+GGG | 0.482548 | tig0006806:+68522 | Msa1344350:CDS |
| TCAGCCCATATTTCCACACT+TGG | 0.484189 | tig0006806:-68040 | None:intergenic |
| GGTTGGACAGTATCTGGAAA+TGG | 0.499106 | tig0006806:+67221 | Msa1344350:CDS |
| ACCAAGACAACAACATTGAA+AGG | 0.500494 | tig0006806:+68107 | Msa1344350:CDS |
| TACTCCAACTGGACAAGTTG+TGG | 0.508753 | tig0006806:+69470 | Msa1344350:CDS |
| ACCTCGAAAAGAATCTCAGC+CGG | 0.511024 | tig0006806:-67639 | None:intergenic |
| CTGTTGAAACCAGCTTGTGC+TGG | 0.513392 | tig0006806:-69417 | None:intergenic |
| TTGAATTTAAGTGTCAGGAA+AGG | 0.514898 | tig0006806:+69627 | Msa1344350:CDS |
| AATCTTGCTTACATGAGGTC+AGG | 0.523790 | tig0006806:+69130 | Msa1344350:CDS |
| GGTTCATCCCACATCCAAAT+GGG | 0.524124 | tig0006806:-68529 | None:intergenic |
| AAAATGGCCTTGCAATCCTA+TGG | 0.528513 | tig0006806:-69092 | None:intergenic |
| GAGGAACGTATATCAAATGA+TGG | 0.531631 | tig0006806:+67251 | Msa1344350:CDS |
| GTAGATATTTCATTACATCA+TGG | 0.536564 | tig0006806:+69555 | Msa1344350:CDS |
| TTTGCTGGTCCAGCACAAGC+TGG | 0.541008 | tig0006806:+69408 | Msa1344350:CDS |
| AGTTACAAACTTCTCGAGCC+CGG | 0.542008 | tig0006806:+67620 | Msa1344350:CDS |
| AGGATTTGATCACAACATAG+AGG | 0.543988 | tig0006806:+67199 | Msa1344350:CDS |
| ACTGAAATGTTATTTGCCAT+AGG | 0.544070 | tig0006806:+69076 | Msa1344350:CDS |
| ATCTGGAAATGGAACAATTG+AGG | 0.546320 | tig0006806:+67232 | Msa1344350:CDS |
| CCAAGACAACAACATTGAAA+GGG | 0.549553 | tig0006806:+68108 | Msa1344350:CDS |
| CCTCGAAAAGAATCTCAGCC+GGG | 0.555600 | tig0006806:-67638 | None:intergenic |
| TTATTTGCCATAGGATTGCA+AGG | 0.558146 | tig0006806:+69085 | Msa1344350:CDS |
| CCCAGAAAATGTTATGACCT+CGG | 0.560200 | tig0006806:-68721 | None:intergenic |
| CAAACATTGACTACCAGGAA+TGG | 0.563798 | tig0006806:+68564 | Msa1344350:CDS |
| TGATTCTTGAATGGGGAAGT+GGG | 0.567685 | tig0006806:+69499 | Msa1344350:CDS |
| TTGATCACAACATAGAGGGT+TGG | 0.568919 | tig0006806:+67204 | Msa1344350:CDS |
| TCATGTAAGCAAGATTTGGC+TGG | 0.570296 | tig0006806:-69123 | None:intergenic |
| ACAAAGGAGAATTGATAGCA+TGG | 0.571786 | tig0006806:+68840 | Msa1344350:CDS |
| CTTTCACTAATGAGATGAAG+TGG | 0.573436 | tig0006806:+68612 | Msa1344350:CDS |
| CAATATACCTGATTTGGCTG+AGG | 0.579698 | tig0006806:-69211 | None:intergenic |
| CAAATTCTAACATTGCATCT+GGG | 0.582016 | tig0006806:-68676 | None:intergenic |
| TTGTCCACAACTTGTCCAGT+TGG | 0.589012 | tig0006806:-69474 | None:intergenic |
| CAATGTTTGTGAGAATATGA+TGG | 0.591061 | tig0006806:-68550 | None:intergenic |
| GGATTTGATCACAACATAGA+GGG | 0.591949 | tig0006806:+67200 | Msa1344350:CDS |
| TCTGTTGTTAAAAGGTACAA+AGG | 0.592676 | tig0006806:+68824 | Msa1344350:CDS |
| GCTTGGCTTCAGTTGAGTGA+AGG | 0.592889 | tig0006806:+67492 | Msa1344350:intron |
| CCTCCATATTGTGCTCTCTG+AGG | 0.597382 | tig0006806:-67158 | None:intergenic |
| TCTCACAAACATTGACTACC+AGG | 0.597515 | tig0006806:+68559 | Msa1344350:CDS |
| GATAATGGAATTTCTGTCCG+AGG | 0.602235 | tig0006806:+68704 | Msa1344350:CDS |
| CAAAGGAGAATTGATAGCAT+GGG | 0.602744 | tig0006806:+68841 | Msa1344350:CDS |
| TAATGCAAATGAAACAGCAT+CGG | 0.605090 | tig0006806:+68466 | Msa1344350:CDS |
| CAGAGAGCACAATATGGAGG+AGG | 0.606885 | tig0006806:+67161 | Msa1344350:CDS |
| ACTCTCATCCAGCAGTTCAA+GGG | 0.613025 | tig0006806:+69376 | Msa1344350:CDS |
| ATCCATGCTTTGCTATCACA+TGG | 0.619431 | tig0006806:-67572 | None:intergenic |
| AGTTGTGATAACACAAACAA+AGG | 0.625979 | tig0006806:+68499 | Msa1344350:CDS |
| AGCCAAATCTTGCTTACATG+AGG | 0.629685 | tig0006806:+69125 | Msa1344350:CDS |
| GCAAATGAAACAGCATCGGA+AGG | 0.632167 | tig0006806:+68470 | Msa1344350:CDS |
| GGAGGCATTATAGTAAACTC+AGG | 0.632520 | tig0006806:+67179 | Msa1344350:CDS |
| GACAATTTGATTCTTGAATG+GGG | 0.637575 | tig0006806:+69492 | Msa1344350:CDS |
| GGCCATGTGATAGCAAAGCA+TGG | 0.645129 | tig0006806:+67570 | Msa1344350:CDS |
| CACAGATTACATATATAAGG+TGG | 0.645917 | tig0006806:-69701 | None:intergenic |
| ACAGCCAAAGCAGATAGTAG+AGG | 0.647030 | tig0006806:+69528 | Msa1344350:CDS |
| GCAGGCAGAGTACTTTGAAG+AGG | 0.651922 | tig0006806:+69338 | Msa1344350:intron |
| GCAGAGCAATAATCCAAGTG+TGG | 0.666015 | tig0006806:+68027 | Msa1344350:intron |
| TGATAGCAAAGCATGGATGT+TGG | 0.670562 | tig0006806:+67577 | Msa1344350:CDS |
| CCTCAGAGAGCACAATATGG+AGG | 0.677720 | tig0006806:+67158 | Msa1344350:CDS |
| AATGGAAGTGAACTTGTGCA+TGG | 0.692631 | tig0006806:+67546 | Msa1344350:CDS |
| GGAAGTGAACTTGTGCATGG+TGG | 0.735930 | tig0006806:+67549 | Msa1344350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTGTTACAATTTTTT+TGG | - | tig0006806:68349-68368 | None:intergenic | 10.0% |
| !!! | TCCTTATTTTTCATTTATAT+AGG | + | tig0006806:67740-67759 | Msa1344350:intron | 15.0% |
| !!! | CCTTATTTTTCATTTATATA+GGG | + | tig0006806:67741-67760 | Msa1344350:intron | 15.0% |
| !!! | AAAATTTTACATGTACTTTT+TGG | + | tig0006806:67895-67914 | Msa1344350:intron | 15.0% |
| !! | TGTTATGTAACAAAAAAAAT+TGG | + | tig0006806:67978-67997 | Msa1344350:intron | 15.0% |
| !!! | ATTTCTTTTGAGTATAAAAT+TGG | - | tig0006806:68223-68242 | None:intergenic | 15.0% |
| !! | AAGAAATACTAAAATTAGAA+CGG | + | tig0006806:68236-68255 | Msa1344350:intron | 15.0% |
| !! | TATAATACTATTGAATATAG+TGG | + | tig0006806:68986-69005 | Msa1344350:CDS | 15.0% |
| !!! | TCTGTTGTATTTAAAACAAA+TGG | + | tig0006806:67528-67547 | Msa1344350:CDS | 20.0% |
| !! | CCCTATATAAATGAAAAATA+AGG | - | tig0006806:67744-67763 | None:intergenic | 20.0% |
| !! | TTTATATAGGGACTAAATAT+AGG | + | tig0006806:67753-67772 | Msa1344350:intron | 20.0% |
| !! | TTATATAGGGACTAAATATA+GGG | + | tig0006806:67754-67773 | Msa1344350:intron | 20.0% |
| !!! | GGGATAAATATATTTTCAAT+CGG | - | tig0006806:67836-67855 | None:intergenic | 20.0% |
| !!! | TTAGAATTTGCTAAAGATAA+TGG | + | tig0006806:68689-68708 | Msa1344350:CDS | 20.0% |
| !!! | TTCATAAACAATGTTGTTTT+TGG | - | tig0006806:68962-68981 | None:intergenic | 20.0% |
| !!! | TTCTTATTTGTTATATATGC+AGG | + | tig0006806:69320-69339 | Msa1344350:intron | 20.0% |
| !!! | AATTCAATTTTTTGGAGTAT+TGG | - | tig0006806:69614-69633 | None:intergenic | 20.0% |
| !!! | GACACTTAAATTCAATTTTT+TGG | - | tig0006806:69622-69641 | None:intergenic | 20.0% |
| !! | AAAAATTGAATTTAAGTGTC+AGG | + | tig0006806:69622-69641 | Msa1344350:CDS | 20.0% |
| ! | ATAAGAATTCAGAAACAACA+AGG | - | tig0006806:67945-67964 | None:intergenic | 25.0% |
| ! | AACCATTTACTAAAAAGGAA+TGG | + | tig0006806:68077-68096 | Msa1344350:CDS | 25.0% |
| !!! | TAAAATTGGTTTGCTTACTA+TGG | - | tig0006806:68209-68228 | None:intergenic | 25.0% |
| !!! | ACCAGTATTGATTTGTAAAA+AGG | + | tig0006806:68379-68398 | Msa1344350:intron | 25.0% |
| !! | TCCTTTTTACAAATCAATAC+TGG | - | tig0006806:68383-68402 | None:intergenic | 25.0% |
| !! | AGTCTTGATTTATAACTTGT+AGG | + | tig0006806:68412-68431 | Msa1344350:intron | 25.0% |
| ! | TTTCATTTGCATTACTTACA+TGG | - | tig0006806:68460-68479 | None:intergenic | 25.0% |
| ! | ATGAAAAATATCAACCTGAA+TGG | + | tig0006806:68747-68766 | Msa1344350:CDS | 25.0% |
| ! | TGAAAAATATCAACCTGAAT+GGG | + | tig0006806:68748-68767 | Msa1344350:CDS | 25.0% |
| !!! | AGATTCAATTCTTTTTTTCG+CGG | - | tig0006806:68807-68826 | None:intergenic | 25.0% |
| ! | GAATTGAATCTGTTGTTAAA+AGG | + | tig0006806:68816-68835 | Msa1344350:CDS | 25.0% |
| ! | TATCCTCATAAAAGTGAAAA+TGG | - | tig0006806:68886-68905 | None:intergenic | 25.0% |
| !!! | TCAAGTTTTTTGAGATAGTT+GGG | - | tig0006806:69031-69050 | None:intergenic | 25.0% |
| !!! | CTAGATTTTCTTGGTAATAT+TGG | + | tig0006806:69154-69173 | Msa1344350:CDS | 25.0% |
| ! | GTAATATTGGATTTCCAATA+TGG | + | tig0006806:69167-69186 | Msa1344350:CDS | 25.0% |
| ! | GTAGATATTTCATTACATCA+TGG | + | tig0006806:69555-69574 | Msa1344350:CDS | 25.0% |
| !! | AAGGTGGTTCTTATTTATTT+AGG | - | tig0006806:69688-69707 | None:intergenic | 25.0% |
| ! | AAGCACAGATTACATATATA+AGG | - | tig0006806:69707-69726 | None:intergenic | 25.0% |
| ! | TAATGATTGTGTTCTTTTGC+TGG | - | tig0006806:67294-67313 | None:intergenic | 30.0% |
| !!! | GGATTGATATACACTTTTTC+AGG | + | tig0006806:67347-67366 | Msa1344350:CDS | 30.0% |
| !! | TTTTATTTCCACATTCAGCT+TGG | + | tig0006806:67475-67494 | Msa1344350:intron | 30.0% |
| ! | CGGCTTAAAATTACATGTTT+TGG | - | tig0006806:67816-67835 | None:intergenic | 30.0% |
| CTTGCTTCTATAAAAGAGAA+GGG | - | tig0006806:67856-67875 | None:intergenic | 30.0% | |
| TCTTGCTTCTATAAAAGAGA+AGG | - | tig0006806:67857-67876 | None:intergenic | 30.0% | |
| ATAATCCAAGTGTGGAAATA+TGG | + | tig0006806:68035-68054 | Msa1344350:CDS | 30.0% | |
| TAATCCAAGTGTGGAAATAT+GGG | + | tig0006806:68036-68055 | Msa1344350:CDS | 30.0% | |
| !! | CTTTTTAGTAAATGGTTGCA+AGG | - | tig0006806:68074-68093 | None:intergenic | 30.0% |
| CTTGCAACCATTTACTAAAA+AGG | + | tig0006806:68072-68091 | Msa1344350:CDS | 30.0% | |
| !! | CTCCATTCCTTTTTAGTAAA+TGG | - | tig0006806:68082-68101 | None:intergenic | 30.0% |
| TTTGTAATACTACCAACTTG+AGG | + | tig0006806:68175-68194 | Msa1344350:intron | 30.0% | |
| CATACTTCGTACAAATAACA+TGG | + | tig0006806:68320-68339 | Msa1344350:intron | 30.0% | |
| TAATGCAAATGAAACAGCAT+CGG | + | tig0006806:68466-68485 | Msa1344350:CDS | 30.0% | |
| AGTTGTGATAACACAAACAA+AGG | + | tig0006806:68499-68518 | Msa1344350:CDS | 30.0% | |
| CAATGTTTGTGAGAATATGA+TGG | - | tig0006806:68553-68572 | None:intergenic | 30.0% | |
| TATAGTACAGAGAAAATTCC+AGG | + | tig0006806:68635-68654 | Msa1344350:CDS | 30.0% | |
| CAAATTCTAACATTGCATCT+GGG | - | tig0006806:68679-68698 | None:intergenic | 30.0% | |
| GATAAATACTTAACCCATTC+AGG | - | tig0006806:68764-68783 | None:intergenic | 30.0% | |
| ! | TCTGTTGTTAAAAGGTACAA+AGG | + | tig0006806:68824-68843 | Msa1344350:CDS | 30.0% |
| !! | TGTCCATTTTCACTTTTATG+AGG | + | tig0006806:68880-68899 | Msa1344350:CDS | 30.0% |
| ! | CACTTTTATGAGGATAAACT+AGG | + | tig0006806:68890-68909 | Msa1344350:CDS | 30.0% |
| !!! | CTCAAGTTTTTTGAGATAGT+TGG | - | tig0006806:69032-69051 | None:intergenic | 30.0% |
| CAACTATCTCAAAAAACTTG+AGG | + | tig0006806:69030-69049 | Msa1344350:CDS | 30.0% | |
| ! | ACTGAAATGTTATTTGCCAT+AGG | + | tig0006806:69076-69095 | Msa1344350:CDS | 30.0% |
| AGGAATCAATATACCTGATT+TGG | - | tig0006806:69220-69239 | None:intergenic | 30.0% | |
| TGGACAATTTGATTCTTGAA+TGG | + | tig0006806:69490-69509 | Msa1344350:CDS | 30.0% | |
| GGACAATTTGATTCTTGAAT+GGG | + | tig0006806:69491-69510 | Msa1344350:CDS | 30.0% | |
| GACAATTTGATTCTTGAATG+GGG | + | tig0006806:69492-69511 | Msa1344350:CDS | 30.0% | |
| !!! | TTTTTGGAGTATTGGTTTGA+AGG | - | tig0006806:69606-69625 | None:intergenic | 30.0% |
| TTGAATTTAAGTGTCAGGAA+AGG | + | tig0006806:69627-69646 | Msa1344350:CDS | 30.0% | |
| TGAATTTAAGTGTCAGGAAA+GGG | + | tig0006806:69628-69647 | Msa1344350:CDS | 30.0% | |
| CACAGATTACATATATAAGG+TGG | - | tig0006806:69704-69723 | None:intergenic | 30.0% | |
| AGGATTTGATCACAACATAG+AGG | + | tig0006806:67199-67218 | Msa1344350:CDS | 35.0% | |
| GGATTTGATCACAACATAGA+GGG | + | tig0006806:67200-67219 | Msa1344350:CDS | 35.0% | |
| ATCTGGAAATGGAACAATTG+AGG | + | tig0006806:67232-67251 | Msa1344350:CDS | 35.0% | |
| GAGGAACGTATATCAAATGA+TGG | + | tig0006806:67251-67270 | Msa1344350:CDS | 35.0% | |
| !! | GGATGTTGGTCTCTTTTAAA+AGG | + | tig0006806:67591-67610 | Msa1344350:CDS | 35.0% |
| !! | TGTTGGTCTCTTTTAAAAGG+CGG | + | tig0006806:67594-67613 | Msa1344350:CDS | 35.0% |
| ! | ACCTTGTACTTTTCCTGAAT+CGG | + | tig0006806:67918-67937 | Msa1344350:intron | 35.0% |
| ACCAAGACAACAACATTGAA+AGG | + | tig0006806:68107-68126 | Msa1344350:CDS | 35.0% | |
| CCAAGACAACAACATTGAAA+GGG | + | tig0006806:68108-68127 | Msa1344350:CDS | 35.0% | |
| ! | ATGGATTTTGTTCCTCAAGT+TGG | - | tig0006806:68190-68209 | None:intergenic | 35.0% |
| TAGAACGGATAATAAAGACG+TGG | + | tig0006806:68251-68270 | Msa1344350:intron | 35.0% | |
| TTGTCGATGCATAAGTTTAG+TGG | - | tig0006806:68292-68311 | None:intergenic | 35.0% | |
| CTTTCACTAATGAGATGAAG+TGG | + | tig0006806:68612-68631 | Msa1344350:CDS | 35.0% | |
| GCAAATTCTAACATTGCATC+TGG | - | tig0006806:68680-68699 | None:intergenic | 35.0% | |
| ! | ACAAAGGAGAATTGATAGCA+TGG | + | tig0006806:68840-68859 | Msa1344350:CDS | 35.0% |
| ! | CAAAGGAGAATTGATAGCAT+GGG | + | tig0006806:68841-68860 | Msa1344350:CDS | 35.0% |
| !!! | GTTTTTTGAGATAGTTGGGT+GGG | - | tig0006806:69027-69046 | None:intergenic | 35.0% |
| !!! | AGTTTTTTGAGATAGTTGGG+TGG | - | tig0006806:69028-69047 | None:intergenic | 35.0% |
| TTATTTGCCATAGGATTGCA+AGG | + | tig0006806:69085-69104 | Msa1344350:CDS | 35.0% | |
| !! | TCATTTTACGTTTGAAGTCG+AGG | - | tig0006806:69240-69259 | None:intergenic | 35.0% |
| ATTATAATCCCTTGAACTGC+TGG | - | tig0006806:69387-69406 | None:intergenic | 35.0% | |
| CAAGGGATTATAATGTTTGC+TGG | + | tig0006806:69393-69412 | Msa1344350:CDS | 35.0% | |
| AATTTCCAAACTACTCCAAC+TGG | + | tig0006806:69459-69478 | Msa1344350:CDS | 35.0% | |
| AATTCCTCTACTATCTGCTT+TGG | - | tig0006806:69535-69554 | None:intergenic | 35.0% | |
| ! | TTTAGGCATGCATTTTCACA+TGG | - | tig0006806:69671-69690 | None:intergenic | 35.0% |
| !! | GGAGGCATTATAGTAAACTC+AGG | + | tig0006806:67179-67198 | Msa1344350:CDS | 40.0% |
| TTGATCACAACATAGAGGGT+TGG | + | tig0006806:67204-67223 | Msa1344350:CDS | 40.0% | |
| CAAACAGTTCAGCTAGAGAA+AGG | + | tig0006806:67326-67345 | Msa1344350:CDS | 40.0% | |
| AATGGAAGTGAACTTGTGCA+TGG | + | tig0006806:67546-67565 | Msa1344350:CDS | 40.0% | |
| ! | ATCCATGCTTTGCTATCACA+TGG | - | tig0006806:67575-67594 | None:intergenic | 40.0% |
| TGATAGCAAAGCATGGATGT+TGG | + | tig0006806:67577-67596 | Msa1344350:CDS | 40.0% | |
| ! | ACCGATTCAGGAAAAGTACA+AGG | - | tig0006806:67922-67941 | None:intergenic | 40.0% |
| CCCTTTCAATGTTGTTGTCT+TGG | - | tig0006806:68111-68130 | None:intergenic | 40.0% | |
| ACGGATAATAAAGACGTGGT+TGG | + | tig0006806:68255-68274 | Msa1344350:intron | 40.0% | |
| CGGATAATAAAGACGTGGTT+GGG | + | tig0006806:68256-68275 | Msa1344350:intron | 40.0% | |
| ACAAAGGCAGATTTCCCATT+TGG | + | tig0006806:68515-68534 | Msa1344350:CDS | 40.0% | |
| CAGATTTCCCATTTGGATGT+GGG | + | tig0006806:68522-68541 | Msa1344350:CDS | 40.0% | |
| ! | TCTCACAAACATTGACTACC+AGG | + | tig0006806:68559-68578 | Msa1344350:CDS | 40.0% |
| ! | CAAACATTGACTACCAGGAA+TGG | + | tig0006806:68564-68583 | Msa1344350:CDS | 40.0% |
| ATCTTGACACAAACCATTCC+TGG | - | tig0006806:68580-68599 | None:intergenic | 40.0% | |
| ! | ATAGTGTAGTTTTCTTGGCC+TGG | - | tig0006806:68656-68675 | None:intergenic | 40.0% |
| ! | CTGGGATAGTGTAGTTTTCT+TGG | - | tig0006806:68661-68680 | None:intergenic | 40.0% |
| !! | GATAATGGAATTTCTGTCCG+AGG | + | tig0006806:68704-68723 | Msa1344350:CDS | 40.0% |
| ! | TCCGAGGTCATAACATTTTC+TGG | + | tig0006806:68720-68739 | Msa1344350:CDS | 40.0% |
| CCCAGAAAATGTTATGACCT+CGG | - | tig0006806:68724-68743 | None:intergenic | 40.0% | |
| ! | CCGAGGTCATAACATTTTCT+GGG | + | tig0006806:68721-68740 | Msa1344350:CDS | 40.0% |
| CTTGAGGAGATTATGCAATC+TGG | + | tig0006806:69046-69065 | Msa1344350:CDS | 40.0% | |
| ! | AAAATGGCCTTGCAATCCTA+TGG | - | tig0006806:69095-69114 | None:intergenic | 40.0% |
| TCATGTAAGCAAGATTTGGC+TGG | - | tig0006806:69126-69145 | None:intergenic | 40.0% | |
| AGCCAAATCTTGCTTACATG+AGG | + | tig0006806:69125-69144 | Msa1344350:CDS | 40.0% | |
| GACCTCATGTAAGCAAGATT+TGG | - | tig0006806:69130-69149 | None:intergenic | 40.0% | |
| AATCTTGCTTACATGAGGTC+AGG | + | tig0006806:69130-69149 | Msa1344350:CDS | 40.0% | |
| ! | AGGTCAGGTCTAGATTTTCT+TGG | + | tig0006806:69145-69164 | Msa1344350:CDS | 40.0% |
| !! | CAATATACCTGATTTGGCTG+AGG | - | tig0006806:69214-69233 | None:intergenic | 40.0% |
| TTGATTCTTGAATGGGGAAG+TGG | + | tig0006806:69498-69517 | Msa1344350:CDS | 40.0% | |
| TGATTCTTGAATGGGGAAGT+GGG | + | tig0006806:69499-69518 | Msa1344350:CDS | 40.0% | |
| CTATCTGCTTTGGCTGTATA+AGG | - | tig0006806:69525-69544 | None:intergenic | 40.0% | |
| ! | GAACCTCAGAGAGCACAATA+TGG | + | tig0006806:67155-67174 | Msa1344350:CDS | 45.0% |
| ATAGAGGGTTGGACAGTATC+TGG | + | tig0006806:67215-67234 | Msa1344350:CDS | 45.0% | |
| GGTTGGACAGTATCTGGAAA+TGG | + | tig0006806:67221-67240 | Msa1344350:CDS | 45.0% | |
| AACTGAAGCCAAGCTGAATG+TGG | - | tig0006806:67486-67505 | None:intergenic | 45.0% | |
| AGTTACAAACTTCTCGAGCC+CGG | + | tig0006806:67620-67639 | Msa1344350:CDS | 45.0% | |
| ACCTCGAAAAGAATCTCAGC+CGG | - | tig0006806:67642-67661 | None:intergenic | 45.0% | |
| ! | GAAACAACAAGGACCGATTC+AGG | - | tig0006806:67934-67953 | None:intergenic | 45.0% |
| GCAGAGCAATAATCCAAGTG+TGG | + | tig0006806:68027-68046 | Msa1344350:intron | 45.0% | |
| TCAGCCCATATTTCCACACT+TGG | - | tig0006806:68043-68062 | None:intergenic | 45.0% | |
| AATAAAGACGTGGTTGGGAG+TGG | + | tig0006806:68261-68280 | Msa1344350:intron | 45.0% | |
| ! | GCAAATGAAACAGCATCGGA+AGG | + | tig0006806:68470-68489 | Msa1344350:CDS | 45.0% |
| GCAGATTTCCCATTTGGATG+TGG | + | tig0006806:68521-68540 | Msa1344350:CDS | 45.0% | |
| GGTTCATCCCACATCCAAAT+GGG | - | tig0006806:68532-68551 | None:intergenic | 45.0% | |
| TGGTTCATCCCACATCCAAA+TGG | - | tig0006806:68533-68552 | None:intergenic | 45.0% | |
| !! | TTGCAAGGCCATTTTGCAAG+TGG | + | tig0006806:69100-69119 | Msa1344350:CDS | 45.0% |
| ATTTGGCTGAGGATCCAAAC+TGG | - | tig0006806:69203-69222 | None:intergenic | 45.0% | |
| TTTGGATCCTCAGCCAAATC+AGG | + | tig0006806:69204-69223 | Msa1344350:CDS | 45.0% | |
| TACTCTCATCCAGCAGTTCA+AGG | + | tig0006806:69375-69394 | Msa1344350:CDS | 45.0% | |
| ACTCTCATCCAGCAGTTCAA+GGG | + | tig0006806:69376-69395 | Msa1344350:CDS | 45.0% | |
| CTTGTCCAGTTGGAGTAGTT+TGG | - | tig0006806:69467-69486 | None:intergenic | 45.0% | |
| TACTCCAACTGGACAAGTTG+TGG | + | tig0006806:69470-69489 | Msa1344350:CDS | 45.0% | |
| TTGTCCACAACTTGTCCAGT+TGG | - | tig0006806:69477-69496 | None:intergenic | 45.0% | |
| ACAGCCAAAGCAGATAGTAG+AGG | + | tig0006806:69528-69547 | Msa1344350:CDS | 45.0% | |
| ! | TGTCAGGAAAGGGTTTTCAC+AGG | + | tig0006806:69638-69657 | Msa1344350:CDS | 45.0% |
| CCTCCATATTGTGCTCTCTG+AGG | - | tig0006806:67161-67180 | None:intergenic | 50.0% | |
| ! | CCTCAGAGAGCACAATATGG+AGG | + | tig0006806:67158-67177 | Msa1344350:CDS | 50.0% |
| ! | CAGAGAGCACAATATGGAGG+AGG | + | tig0006806:67161-67180 | Msa1344350:CDS | 50.0% |
| GCTTGGCTTCAGTTGAGTGA+AGG | + | tig0006806:67492-67511 | Msa1344350:intron | 50.0% | |
| GGAAGTGAACTTGTGCATGG+TGG | + | tig0006806:67549-67568 | Msa1344350:CDS | 50.0% | |
| GGCCATGTGATAGCAAAGCA+TGG | + | tig0006806:67570-67589 | Msa1344350:CDS | 50.0% | |
| CCTCGAAAAGAATCTCAGCC+GGG | - | tig0006806:67641-67660 | None:intergenic | 50.0% | |
| ! | TTGGCTGGCCACTTGCAAAA+TGG | - | tig0006806:69111-69130 | None:intergenic | 50.0% |
| CTGGCTTCTGTGAGCCATAT+TGG | - | tig0006806:69184-69203 | None:intergenic | 50.0% | |
| ATGGCTCACAGAAGCCAGTT+TGG | + | tig0006806:69186-69205 | Msa1344350:CDS | 50.0% | |
| ! | GCAGGCAGAGTACTTTGAAG+AGG | + | tig0006806:69338-69357 | Msa1344350:intron | 50.0% |
| CTGTTGAAACCAGCTTGTGC+TGG | - | tig0006806:69420-69439 | None:intergenic | 50.0% | |
| ! | CCCGGCTGAGATTCTTTTCG+AGG | + | tig0006806:67638-67657 | Msa1344350:CDS | 55.0% |
| GCGGCTTTGCGCAATTCATC+GGG | - | tig0006806:68788-68807 | None:intergenic | 55.0% | |
| CGCGGCTTTGCGCAATTCAT+CGG | - | tig0006806:68789-68808 | None:intergenic | 55.0% | |
| TTTGCTGGTCCAGCACAAGC+TGG | + | tig0006806:69408-69427 | Msa1344350:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0006806 | gene | 67149 | 69733 | 67149 | ID=Msa1344350;Name=Msa1344350 |
| tig0006806 | mRNA | 67149 | 69733 | 67149 | ID=Msa1344350-mRNA-1;Parent=Msa1344350;Name=Msa1344350-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0.75|0.4|1|1|1|5|44|541 |
| tig0006806 | exon | 67149 | 67368 | 67149 | ID=Msa1344350-mRNA-1:exon:4458;Parent=Msa1344350-mRNA-1 |
| tig0006806 | exon | 67493 | 67659 | 67493 | ID=Msa1344350-mRNA-1:exon:4459;Parent=Msa1344350-mRNA-1 |
| tig0006806 | exon | 68031 | 68129 | 68031 | ID=Msa1344350-mRNA-1:exon:4460;Parent=Msa1344350-mRNA-1 |
| tig0006806 | exon | 68434 | 69225 | 68434 | ID=Msa1344350-mRNA-1:exon:4461;Parent=Msa1344350-mRNA-1 |
| tig0006806 | exon | 69342 | 69733 | 69342 | ID=Msa1344350-mRNA-1:exon:4462;Parent=Msa1344350-mRNA-1 |
| tig0006806 | CDS | 67149 | 67368 | 67149 | ID=Msa1344350-mRNA-1:cds;Parent=Msa1344350-mRNA-1 |
| tig0006806 | CDS | 67493 | 67659 | 67493 | ID=Msa1344350-mRNA-1:cds;Parent=Msa1344350-mRNA-1 |
| tig0006806 | CDS | 68031 | 68129 | 68031 | ID=Msa1344350-mRNA-1:cds;Parent=Msa1344350-mRNA-1 |
| tig0006806 | CDS | 68434 | 69225 | 68434 | ID=Msa1344350-mRNA-1:cds;Parent=Msa1344350-mRNA-1 |
| tig0006806 | CDS | 69342 | 69689 | 69342 | ID=Msa1344350-mRNA-1:cds;Parent=Msa1344350-mRNA-1 |
| tig0006806 | three_prime_UTR | 69690 | 69733 | 69690 | ID=Msa1344350-mRNA-1:three_prime_utr;Parent=Msa1344350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
