Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423270 | sp|Q9FVR6|Y1222_ARATH | 65.347 | 303 | 95 | 4 | 1 | 301 | 1 | 295 | 7.13e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423270 | G7KCB8 | 97.682 | 302 | 7 | 0 | 1 | 302 | 1 | 302 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024900 | Msa1423270 | 0.806833 | 6.790046e-50 | -8.615850e-47 |
| Msa0025340 | Msa1423270 | 0.819525 | 1.109506e-52 | -8.615850e-47 |
| Msa0037300 | Msa1423270 | 0.800072 | 1.710999e-48 | -8.615850e-47 |
| Msa0038750 | Msa1423270 | 0.810897 | 9.173106e-51 | -8.615850e-47 |
| Msa0042210 | Msa1423270 | 0.823348 | 1.453856e-53 | -8.615850e-47 |
| Msa0046050 | Msa1423270 | 0.808860 | 2.516292e-50 | -8.615850e-47 |
| Msa0046800 | Msa1423270 | 0.817515 | 3.167962e-52 | -8.615850e-47 |
| Msa0053210 | Msa1423270 | 0.826766 | 2.265069e-54 | -8.615850e-47 |
| Msa0070580 | Msa1423270 | 0.804649 | 1.952270e-49 | -8.615850e-47 |
| Msa0076590 | Msa1423270 | 0.807760 | 4.318309e-50 | -8.615850e-47 |
| Msa0076990 | Msa1423270 | 0.800558 | 1.362492e-48 | -8.615850e-47 |
| Msa0089450 | Msa1423270 | -0.845089 | 5.048505e-59 | -8.615850e-47 |
| Msa0112340 | Msa1423270 | 0.841433 | 4.766653e-58 | -8.615850e-47 |
| Msa1344350 | Msa1423270 | -0.842433 | 2.593962e-58 | -8.615850e-47 |
| Msa1345470 | Msa1423270 | 0.833768 | 4.412254e-56 | -8.615850e-47 |
| Msa1349720 | Msa1423270 | 0.811205 | 7.864860e-51 | -8.615850e-47 |
| Msa1364850 | Msa1423270 | 0.808284 | 3.340223e-50 | -8.615850e-47 |
| Msa1369390 | Msa1423270 | 0.821499 | 3.907965e-53 | -8.615850e-47 |
| Msa1375570 | Msa1423270 | 0.802423 | 5.650194e-49 | -8.615850e-47 |
| Msa1376510 | Msa1423270 | 0.806105 | 9.669339e-50 | -8.615850e-47 |
| Msa1414450 | Msa1423270 | 0.800708 | 1.269894e-48 | -8.615850e-47 |
| Msa1423270 | Msa1427020 | 0.818613 | 1.788772e-52 | -8.615850e-47 |
| Msa1423270 | Msa1430630 | 0.808406 | 3.146907e-50 | -8.615850e-47 |
| Msa1423270 | Msa1435690 | 0.800252 | 1.572408e-48 | -8.615850e-47 |
| Msa1423270 | Msa1443280 | 0.803101 | 4.094328e-49 | -8.615850e-47 |
| Msa0619450 | Msa1423270 | 0.809990 | 1.439814e-50 | -8.615850e-47 |
| Msa0619530 | Msa1423270 | 0.811896 | 5.567355e-51 | -8.615850e-47 |
| Msa0619960 | Msa1423270 | 0.821762 | 3.397393e-53 | -8.615850e-47 |
| Msa0620050 | Msa1423270 | 0.836940 | 6.968115e-57 | -8.615850e-47 |
| Msa0624700 | Msa1423270 | 0.817148 | 3.833102e-52 | -8.615850e-47 |
| Msa0633310 | Msa1423270 | 0.843588 | 1.277723e-58 | -8.615850e-47 |
| Msa0659580 | Msa1423270 | 0.810592 | 1.067681e-50 | -8.615850e-47 |
| Msa0681100 | Msa1423270 | 0.821107 | 4.814420e-53 | -8.615850e-47 |
| Msa0685520 | Msa1423270 | 0.812438 | 4.238735e-51 | -8.615850e-47 |
| Msa0697420 | Msa1423270 | 0.815125 | 1.085035e-51 | -8.615850e-47 |
| Msa0697610 | Msa1423270 | 0.812624 | 3.861548e-51 | -8.615850e-47 |
| Msa0699200 | Msa1423270 | 0.832717 | 8.062577e-56 | -8.615850e-47 |
| Msa0704720 | Msa1423270 | 0.812534 | 4.039873e-51 | -8.615850e-47 |
| Msa0705670 | Msa1423270 | 0.803830 | 2.890890e-49 | -8.615850e-47 |
| Msa0708360 | Msa1423270 | 0.805150 | 1.533987e-49 | -8.615850e-47 |
| Msa0712580 | Msa1423270 | 0.806138 | 9.512451e-50 | -8.615850e-47 |
| Msa0719330 | Msa1423270 | 0.801369 | 9.301556e-49 | -8.615850e-47 |
| Msa0720000 | Msa1423270 | 0.927701 | 8.141897e-92 | -8.615850e-47 |
| Msa0745270 | Msa1423270 | 0.819352 | 1.215248e-52 | -8.615850e-47 |
| Msa0766950 | Msa1423270 | 0.800898 | 1.161044e-48 | -8.615850e-47 |
| Msa0790380 | Msa1423270 | 0.803664 | 3.130018e-49 | -8.615850e-47 |
| Msa0799150 | Msa1423270 | 0.857517 | 1.546382e-62 | -8.615850e-47 |
| Msa0825960 | Msa1423270 | 0.807139 | 5.847918e-50 | -8.615850e-47 |
| Msa0841350 | Msa1423270 | 0.998788 | 1.190118e-276 | -8.615850e-47 |
| Msa0127510 | Msa1423270 | 0.812012 | 5.251751e-51 | -8.615850e-47 |
| Msa0128840 | Msa1423270 | 0.808916 | 2.448532e-50 | -8.615850e-47 |
| Msa0131640 | Msa1423270 | 0.810061 | 1.390248e-50 | -8.615850e-47 |
| Msa0155280 | Msa1423270 | 0.864238 | 1.404245e-64 | -8.615850e-47 |
| Msa0155550 | Msa1423270 | 0.848026 | 7.964795e-60 | -8.615850e-47 |
| Msa0160080 | Msa1423270 | 0.803745 | 3.009919e-49 | -8.615850e-47 |
| Msa0160120 | Msa1423270 | 0.830747 | 2.466831e-55 | -8.615850e-47 |
| Msa0160470 | Msa1423270 | 0.800896 | 1.161991e-48 | -8.615850e-47 |
| Msa0164530 | Msa1423270 | 0.821526 | 3.853982e-53 | -8.615850e-47 |
| Msa0168470 | Msa1423270 | 0.804540 | 2.056760e-49 | -8.615850e-47 |
| Msa0182610 | Msa1423270 | 0.803208 | 3.890744e-49 | -8.615850e-47 |
| Msa0183770 | Msa1423270 | -0.802484 | 5.489760e-49 | -8.615850e-47 |
| Msa0185540 | Msa1423270 | 0.833051 | 6.659302e-56 | -8.615850e-47 |
| Msa0188670 | Msa1423270 | 0.805170 | 1.519161e-49 | -8.615850e-47 |
| Msa0191180 | Msa1423270 | 0.821297 | 4.352467e-53 | -8.615850e-47 |
| Msa0220050 | Msa1423270 | 0.824351 | 8.462452e-54 | -8.615850e-47 |
| Msa1237750 | Msa1423270 | 0.801062 | 1.074878e-48 | -8.615850e-47 |
| Msa1252730 | Msa1423270 | 0.844013 | 9.834874e-59 | -8.615850e-47 |
| Msa1264670 | Msa1423270 | 0.807456 | 5.010689e-50 | -8.615850e-47 |
| Msa1270860 | Msa1423270 | 0.805432 | 1.339039e-49 | -8.615850e-47 |
| Msa1288380 | Msa1423270 | 0.816446 | 5.507811e-52 | -8.615850e-47 |
| Msa1297490 | Msa1423270 | 0.810207 | 1.293094e-50 | -8.615850e-47 |
| Msa1297550 | Msa1423270 | 0.801360 | 9.341417e-49 | -8.615850e-47 |
| Msa1298180 | Msa1423270 | 0.805390 | 1.365957e-49 | -8.615850e-47 |
| Msa1308010 | Msa1423270 | 0.805712 | 1.169570e-49 | -8.615850e-47 |
| Msa1325260 | Msa1423270 | 0.804910 | 1.721406e-49 | -8.615850e-47 |
| Msa1325270 | Msa1423270 | 0.807271 | 5.482652e-50 | -8.615850e-47 |
| Msa1330080 | Msa1423270 | 0.802371 | 5.790301e-49 | -8.615850e-47 |
| Msa1335210 | Msa1423270 | 0.821057 | 4.941970e-53 | -8.615850e-47 |
| Msa1337950 | Msa1423270 | 0.811752 | 5.982806e-51 | -8.615850e-47 |
| Msa1339250 | Msa1423270 | 0.810781 | 9.719675e-51 | -8.615850e-47 |
| Msa0367600 | Msa1423270 | 0.814183 | 1.754280e-51 | -8.615850e-47 |
| Msa0369430 | Msa1423270 | 0.847900 | 8.627925e-60 | -8.615850e-47 |
| Msa0408830 | Msa1423270 | 0.813966 | 1.958389e-51 | -8.615850e-47 |
| Msa0414130 | Msa1423270 | 0.801173 | 1.020401e-48 | -8.615850e-47 |
| Msa0415060 | Msa1423270 | 0.805617 | 1.224305e-49 | -8.615850e-47 |
| Msa0416530 | Msa1423270 | 0.813316 | 2.721967e-51 | -8.615850e-47 |
| Msa0425150 | Msa1423270 | 0.814578 | 1.434346e-51 | -8.615850e-47 |
| Msa0428280 | Msa1423270 | 0.802492 | 5.468311e-49 | -8.615850e-47 |
| Msa0430040 | Msa1423270 | 0.810209 | 1.291478e-50 | -8.615850e-47 |
| Msa0436110 | Msa1423270 | 0.807194 | 5.694013e-50 | -8.615850e-47 |
| Msa0437790 | Msa1423270 | 0.800161 | 1.640742e-48 | -8.615850e-47 |
| Msa0440720 | Msa1423270 | 0.833230 | 6.009396e-56 | -8.615850e-47 |
| Msa0453610 | Msa1423270 | 0.833663 | 4.686773e-56 | -8.615850e-47 |
| Msa0464730 | Msa1423270 | 0.824739 | 6.855568e-54 | -8.615850e-47 |
| Msa0474640 | Msa1423270 | 0.847156 | 1.382096e-59 | -8.615850e-47 |
| Msa0476140 | Msa1423270 | 0.810840 | 9.437040e-51 | -8.615850e-47 |
| Msa0995130 | Msa1423270 | 0.800776 | 1.229674e-48 | -8.615850e-47 |
| Msa1013560 | Msa1423270 | 0.825197 | 5.345440e-54 | -8.615850e-47 |
| Msa1076530 | Msa1423270 | 0.805435 | 1.336959e-49 | -8.615850e-47 |
| Msa0270230 | Msa1423270 | 0.804429 | 2.169163e-49 | -8.615850e-47 |
| Msa0292060 | Msa1423270 | 0.801141 | 1.035770e-48 | -8.615850e-47 |
| Msa0307460 | Msa1423270 | 0.816260 | 6.062044e-52 | -8.615850e-47 |
| Msa0307820 | Msa1423270 | 0.817975 | 2.494868e-52 | -8.615850e-47 |
| Msa0311910 | Msa1423270 | 0.868723 | 5.283877e-66 | -8.615850e-47 |
| Msa0319720 | Msa1423270 | 0.810255 | 1.262145e-50 | -8.615850e-47 |
| Msa0322480 | Msa1423270 | 0.822953 | 1.797378e-53 | -8.615850e-47 |
| Msa0330240 | Msa1423270 | 0.812177 | 4.833224e-51 | -8.615850e-47 |
| Msa0348760 | Msa1423270 | 0.802086 | 6.629964e-49 | -8.615850e-47 |
| Msa1131300 | Msa1423270 | 0.825347 | 4.926456e-54 | -8.615850e-47 |
| Msa1137800 | Msa1423270 | 0.833646 | 4.731222e-56 | -8.615850e-47 |
| Msa1163230 | Msa1423270 | 0.810426 | 1.159712e-50 | -8.615850e-47 |
| Msa1199210 | Msa1423270 | 0.836553 | 8.746356e-57 | -8.615850e-47 |
| Msa1202220 | Msa1423270 | 0.813090 | 3.052719e-51 | -8.615850e-47 |
| Msa0503220 | Msa1423270 | -0.812809 | 3.517561e-51 | -8.615850e-47 |
| Msa0504360 | Msa1423270 | 0.833826 | 4.265267e-56 | -8.615850e-47 |
| Msa0504740 | Msa1423270 | 0.828053 | 1.113104e-54 | -8.615850e-47 |
| Msa0511010 | Msa1423270 | 0.808093 | 3.668099e-50 | -8.615850e-47 |
| Msa0514630 | Msa1423270 | 0.806063 | 9.867263e-50 | -8.615850e-47 |
| Msa0515730 | Msa1423270 | 0.817232 | 3.669225e-52 | -8.615850e-47 |
| Msa0519090 | Msa1423270 | 0.843423 | 1.414368e-58 | -8.615850e-47 |
| Msa0550720 | Msa1423270 | 0.819827 | 9.463975e-53 | -8.615850e-47 |
| Msa0552670 | Msa1423270 | 0.821034 | 5.004260e-53 | -8.615850e-47 |
| Msa0600940 | Msa1423270 | 0.800820 | 1.204733e-48 | -8.615850e-47 |
| Msa0862960 | Msa1423270 | 0.805702 | 1.175282e-49 | -8.615850e-47 |
| Msa0937270 | Msa1423270 | 0.803263 | 3.789586e-49 | -8.615850e-47 |
| Msa0940550 | Msa1423270 | 0.807118 | 5.907866e-50 | -8.615850e-47 |
| Msa0967540 | Msa1423270 | 0.810292 | 1.239254e-50 | -8.615850e-47 |
| Msa0970090 | Msa1423270 | 0.811607 | 6.432918e-51 | -8.615850e-47 |
| Msa0977090 | Msa1423270 | 0.808374 | 3.195938e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423270 | MtrunA17_Chr5g0410681 | 97.682 | 302 | 7 | 0 | 1 | 302 | 1 | 302 | 0.0 | 592 |
| Msa1423270 | MtrunA17_Chr3g0136661 | 48.744 | 199 | 96 | 3 | 68 | 265 | 55 | 248 | 5.45e-59 | 190 |
| Msa1423270 | MtrunA17_Chr6g0452121 | 82.927 | 41 | 7 | 0 | 118 | 158 | 3 | 43 | 1.95e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423270 | AT1G32220.1 | 65.347 | 303 | 95 | 4 | 1 | 301 | 1 | 295 | 7.24e-144 | 407 |
| Msa1423270 | AT5G10730.1 | 46.330 | 218 | 111 | 3 | 68 | 284 | 56 | 268 | 4.44e-55 | 181 |
| Msa1423270 | AT5G15910.1 | 46.759 | 216 | 110 | 3 | 70 | 284 | 43 | 254 | 5.32e-51 | 169 |
| Msa1423270 | AT5G15910.2 | 46.296 | 216 | 111 | 3 | 70 | 284 | 2 | 213 | 9.55e-51 | 167 |
Find 95 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGAGATCAATATGAATT+TGG | 0.138307 | tig0025526:-29633 | None:intergenic |
| GTTTATTACTCTGCAGTATT+TGG | 0.173088 | tig0025526:+30511 | Msa1423270:three_prime_UTR |
| CTATTTGCAATTGCAGAATT+TGG | 0.210693 | tig0025526:-30437 | None:intergenic |
| GATCAGGTTACTTGGATTTC+AGG | 0.214857 | tig0025526:+27716 | Msa1423270:CDS |
| TTGGAGATCCTCCTTATCTT+AGG | 0.243233 | tig0025526:+30530 | Msa1423270:three_prime_UTR |
| ACCTGCTTCTGATCTACTTT+TGG | 0.261984 | tig0025526:+30254 | Msa1423270:CDS |
| TGCAATTGCAAATAGTATAA+AGG | 0.289433 | tig0025526:+30445 | Msa1423270:three_prime_UTR |
| GTCTCAACCCTCGGAGGTTT+TGG | 0.292716 | tig0025526:+28972 | Msa1423270:CDS |
| CAGGATTCATATATGGTAAA+AGG | 0.317786 | tig0025526:+30133 | Msa1423270:CDS |
| CTCACAGATGACGACTTCTT+TGG | 0.320954 | tig0025526:+30324 | Msa1423270:CDS |
| GAAGCAGGTAGTGCGCTTAA+TGG | 0.328456 | tig0025526:-30240 | None:intergenic |
| CATGGATAGATCAGGTTACT+TGG | 0.349750 | tig0025526:+27708 | Msa1423270:CDS |
| ACAGAATAATAACACTTCTA+TGG | 0.359494 | tig0025526:-30629 | None:intergenic |
| CTATCCAAGTTCCCTAGTTC+AGG | 0.365581 | tig0025526:+29731 | Msa1423270:CDS |
| TAATATTTAGATTGTAGTCT+TGG | 0.367996 | tig0025526:+27485 | Msa1423270:intron |
| TGGAGATCCTCCTTATCTTA+GGG | 0.368069 | tig0025526:+30531 | Msa1423270:three_prime_UTR |
| AACTGGGACGAAGTACTTCC+TGG | 0.372764 | tig0025526:+28936 | Msa1423270:CDS |
| TTGGGAGGCAATGGGTTTGT+TGG | 0.385926 | tig0025526:+27504 | Msa1423270:CDS |
| ACTGAGATCAATATGAATTT+GGG | 0.389375 | tig0025526:-29632 | None:intergenic |
| GCAATTGCAAATAGTATAAA+GGG | 0.389485 | tig0025526:+30446 | Msa1423270:three_prime_UTR |
| GAGATTCCCTTGGATTTAGT+AGG | 0.395939 | tig0025526:+30171 | Msa1423270:CDS |
| TAGAAGTCATAAGCTTAAAC+AGG | 0.401284 | tig0025526:+27562 | Msa1423270:CDS |
| TTAAGACCAGGATTCATATA+TGG | 0.403014 | tig0025526:+30126 | Msa1423270:CDS |
| TATGGTAAAAGGAGAGTTGA+TGG | 0.406363 | tig0025526:+30144 | Msa1423270:CDS |
| ATAAAGTCACAAGTGGATAA+AGG | 0.411611 | tig0025526:-30669 | None:intergenic |
| GTAAATGCTGCAAACGAATA+TGG | 0.416823 | tig0025526:+29044 | Msa1423270:CDS |
| GCAACATCATCAACACTAAC+AGG | 0.417365 | tig0025526:-30282 | None:intergenic |
| GCTTATGACTTCTATGCCCT+TGG | 0.419174 | tig0025526:-27553 | None:intergenic |
| CTTTCATCGGGGTACTTCAC+AGG | 0.421460 | tig0025526:+29683 | Msa1423270:CDS |
| TTAAGCTCAACTCAACAAAA+TGG | 0.427738 | tig0025526:+26166 | Msa1423270:exon |
| AATATTTAGATTGTAGTCTT+GGG | 0.429498 | tig0025526:+27486 | Msa1423270:intron |
| CTCAGATTCATGGATAGATC+AGG | 0.452914 | tig0025526:+27700 | Msa1423270:CDS |
| AGGAAGCCGCTGATAAAGTA+AGG | 0.454304 | tig0025526:+30370 | Msa1423270:CDS |
| GTCCTACTTACTCAGATTCA+TGG | 0.454390 | tig0025526:+27690 | Msa1423270:CDS |
| ATTGTAGTCTTGGGAGGCAA+TGG | 0.455853 | tig0025526:+27495 | Msa1423270:CDS |
| GCAGTTAGCTGTAGTTATGC+AGG | 0.463776 | tig0025526:+27086 | Msa1423270:CDS |
| AGATTCCCTTGGATTTAGTA+GGG | 0.465440 | tig0025526:+30172 | Msa1423270:CDS |
| GTATAATCCACGTACATGTC+TGG | 0.481235 | tig0025526:+30393 | Msa1423270:exon |
| GAGACTACTGCAGTAGCTCC+AGG | 0.492058 | tig0025526:-28954 | None:intergenic |
| GTTGCATTGGCTGTTATCAA+TGG | 0.498498 | tig0025526:+30300 | Msa1423270:CDS |
| GTGACCTGAACTAGGGAACT+TGG | 0.501095 | tig0025526:-29735 | None:intergenic |
| TTGTAGTCTTGGGAGGCAAT+GGG | 0.505552 | tig0025526:+27496 | Msa1423270:CDS |
| ATGAGACGAGGAGAAACAGC+AGG | 0.508541 | tig0025526:-26206 | None:intergenic |
| TACATGTCTGGTGTCATACT+AGG | 0.513880 | tig0025526:+30405 | Msa1423270:three_prime_UTR |
| GGCTGATGTTATAAGCGAAA+AGG | 0.514531 | tig0025526:+27157 | Msa1423270:CDS |
| ATCGAATAGTGACCTGAACT+AGG | 0.519914 | tig0025526:-29743 | None:intergenic |
| AGCTGTAGTTATGCAGGAGC+AGG | 0.520415 | tig0025526:+27092 | Msa1423270:CDS |
| GAACAAATGAGAAAGATTAA+CGG | 0.530717 | tig0025526:+29002 | Msa1423270:CDS |
| ATCACTGTTCCCCTAAGATA+AGG | 0.533399 | tig0025526:-30541 | None:intergenic |
| GGGTCGTTTGAGAGAGAAAA+CGG | 0.535571 | tig0025526:-26234 | None:intergenic |
| ACCGTCACTGTTTCCCGTGG+TGG | 0.538531 | tig0025526:+26065 | Msa1423270:five_prime_UTR |
| TAGTGTTGATGATGTTGCAT+TGG | 0.542955 | tig0025526:+30287 | Msa1423270:CDS |
| ATGCAAGGCAGCAGTATCCA+AGG | 0.543594 | tig0025526:+27536 | Msa1423270:CDS |
| GCCAAAAGTAGATCAGAAGC+AGG | 0.548352 | tig0025526:-30255 | None:intergenic |
| TCAGGTATTGTCTTAAGACC+AGG | 0.549678 | tig0025526:+30114 | Msa1423270:intron |
| GGGAACAGTGATTGCTAAGG+GGG | 0.553001 | tig0025526:+30552 | Msa1423270:three_prime_UTR |
| AAAGAGAAAAGCAGAATCTG+AGG | 0.554082 | tig0025526:+29706 | Msa1423270:CDS |
| AGGGGAACAGTGATTGCTAA+GGG | 0.556494 | tig0025526:+30550 | Msa1423270:three_prime_UTR |
| GACATCAACTATAGATGTTG+TGG | 0.557306 | tig0025526:+27136 | Msa1423270:CDS |
| TGGCTCCCCTACTAAATCCA+AGG | 0.560635 | tig0025526:-30178 | None:intergenic |
| GCCTCAAATAAAGTCACAAG+TGG | 0.569335 | tig0025526:-30676 | None:intergenic |
| ATTTAGATTGTAGTCTTGGG+AGG | 0.570467 | tig0025526:+27489 | Msa1423270:intron |
| GGAGATCCTCCTTATCTTAG+GGG | 0.580617 | tig0025526:+30532 | Msa1423270:three_prime_UTR |
| GGTAGGTGGAGTGTGAGTGA+AGG | 0.586620 | tig0025526:-26255 | None:intergenic |
| GTAGGTGGAGTGTGAGTGAA+GGG | 0.586862 | tig0025526:-26254 | None:intergenic |
| ATCCATGAATCTGAGTAAGT+AGG | 0.589037 | tig0025526:-27692 | None:intergenic |
| TGTTGGTTCTGCGATATGCA+AGG | 0.592323 | tig0025526:+27521 | Msa1423270:CDS |
| TAGGGGAACAGTGATTGCTA+AGG | 0.593721 | tig0025526:+30549 | Msa1423270:three_prime_UTR |
| TTATACCCTTACTTTATCAG+CGG | 0.594826 | tig0025526:-30376 | None:intergenic |
| ACCTCGTGAAGATGATTAAG+CGG | 0.599968 | tig0025526:-26137 | None:intergenic |
| AGTTATGCAGGAGCAGGTGT+TGG | 0.608243 | tig0025526:+27098 | Msa1423270:CDS |
| CTCGCTACCAAAACCTCCGA+GGG | 0.612537 | tig0025526:-28979 | None:intergenic |
| TAACGGCGAGGCTAATGTTG+TGG | 0.613394 | tig0025526:+29019 | Msa1423270:CDS |
| CAAACCGTCACTGTTTCCCG+TGG | 0.618823 | tig0025526:+26062 | Msa1423270:five_prime_UTR |
| GATTCCCTTGGATTTAGTAG+GGG | 0.622144 | tig0025526:+30173 | Msa1423270:CDS |
| TCGAATAGTGACCTGAACTA+GGG | 0.622863 | tig0025526:-29742 | None:intergenic |
| TCCACCACGGGAAACAGTGA+CGG | 0.629227 | tig0025526:-26066 | None:intergenic |
| ACTGCAGTAGTCTCAACCCT+CGG | 0.629761 | tig0025526:+28963 | Msa1423270:CDS |
| GGCTCCCCTACTAAATCCAA+GGG | 0.633899 | tig0025526:-30177 | None:intergenic |
| ACTGTTCCCCTAAGATAAGG+AGG | 0.635667 | tig0025526:-30538 | None:intergenic |
| CCTCGCTACCAAAACCTCCG+AGG | 0.646053 | tig0025526:-28980 | None:intergenic |
| GGAAGCCGCTGATAAAGTAA+GGG | 0.650381 | tig0025526:+30371 | Msa1423270:CDS |
| TGCAAGGCAGCAGTATCCAA+GGG | 0.660059 | tig0025526:+27537 | Msa1423270:CDS |
| AAGTCACAAGTGGATAAAGG+TGG | 0.660196 | tig0025526:-30666 | None:intergenic |
| CGTTTGAGAGAGAAAACGGT+GGG | 0.661357 | tig0025526:-26230 | None:intergenic |
| GGGGAACAGTGATTGCTAAG+GGG | 0.669682 | tig0025526:+30551 | Msa1423270:three_prime_UTR |
| ACATCATCAACACTAACAGG+TGG | 0.670086 | tig0025526:-30279 | None:intergenic |
| AAAACGGTGGGAATGAGACG+AGG | 0.678492 | tig0025526:-26218 | None:intergenic |
| TGAGACGAGGAGAAACAGCA+GGG | 0.692443 | tig0025526:-26205 | None:intergenic |
| AATGAGAAAGATTAACGGCG+AGG | 0.694239 | tig0025526:+29007 | Msa1423270:CDS |
| AATAAACTATAGATTCAACA+AGG | 0.715150 | tig0025526:-30495 | None:intergenic |
| TATGACACCAGACATGTACG+TGG | 0.732297 | tig0025526:-30400 | None:intergenic |
| GCAGTAGTCTCAACCCTCGG+AGG | 0.734128 | tig0025526:+28966 | Msa1423270:CDS |
| ACCGCTTAATCATCTTCACG+AGG | 0.735744 | tig0025526:+26136 | Msa1423270:five_prime_UTR |
| TCGTTTGAGAGAGAAAACGG+TGG | 0.746736 | tig0025526:-26231 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTATTTTTTCATTTTT+TGG | + | tig0025526:26544-26563 | Msa1423270:intron | 10.0% |
| !! | ATCAAAATTATCAAAATAAT+GGG | - | tig0025526:27204-27223 | None:intergenic | 10.0% |
| !! | TATCAAAATTATCAAAATAA+TGG | - | tig0025526:27205-27224 | None:intergenic | 10.0% |
| !!! | ATTATTAAAGAAAAATTTTG+TGG | + | tig0025526:28199-28218 | Msa1423270:intron | 10.0% |
| !!! | ATTTTTTCATTTTTTGGATT+TGG | + | tig0025526:26550-26569 | Msa1423270:intron | 15.0% |
| !!! | ATTTTGATACTTTTCATTTT+TGG | + | tig0025526:27216-27235 | Msa1423270:intron | 15.0% |
| !!! | TTTTGATACTTTTCATTTTT+GGG | + | tig0025526:27217-27236 | Msa1423270:intron | 15.0% |
| !!! | AAATTGTTTTACAATTTAGT+TGG | - | tig0025526:27457-27476 | None:intergenic | 15.0% |
| !!! | TTTAACTCAAATTTTCTTAA+TGG | - | tig0025526:28543-28562 | None:intergenic | 15.0% |
| !! | TATAAACATCATAACAATAT+CGG | + | tig0025526:28773-28792 | Msa1423270:intron | 15.0% |
| !! | TGTAAGATAGATAAATATAA+TGG | + | tig0025526:28807-28826 | Msa1423270:intron | 15.0% |
| !! | GTAAGATAGATAAATATAAT+GGG | + | tig0025526:28808-28827 | Msa1423270:intron | 15.0% |
| !!! | AAATTTTAAGTCTTGTTTTA+TGG | - | tig0025526:29181-29200 | None:intergenic | 15.0% |
| !!! | TGATGCTTTAAATTTATTTA+TGG | + | tig0025526:29541-29560 | Msa1423270:intron | 15.0% |
| !!! | AGTTGTGAATTTTTTATAGA+AGG | - | tig0025526:26317-26336 | None:intergenic | 20.0% |
| !!! | TTTTTTCATTTCTCAATTCT+GGG | + | tig0025526:26336-26355 | Msa1423270:intron | 20.0% |
| !!! | TTAATTTGTTTGCTAATGAT+AGG | + | tig0025526:26459-26478 | Msa1423270:intron | 20.0% |
| !!! | ATAATTCAACTTTTCCATTA+TGG | + | tig0025526:26650-26669 | Msa1423270:intron | 20.0% |
| !! | AAAATAGTGAATTACTTGAT+AGG | + | tig0025526:27373-27392 | Msa1423270:intron | 20.0% |
| !! | TAATATTTAGATTGTAGTCT+TGG | + | tig0025526:27485-27504 | Msa1423270:intron | 20.0% |
| !! | AATATTTAGATTGTAGTCTT+GGG | + | tig0025526:27486-27505 | Msa1423270:intron | 20.0% |
| !!! | ATCCAACTTTTTTTTTTACT+CGG | - | tig0025526:27806-27825 | None:intergenic | 20.0% |
| !! | AGCCAATAAAAAAGTAAAAT+AGG | + | tig0025526:28127-28146 | Msa1423270:intron | 20.0% |
| !!! | CACCTATTTTACTTTTTTAT+TGG | - | tig0025526:28132-28151 | None:intergenic | 20.0% |
| !!! | AATTTGAGACAATGAAATTA+TGG | + | tig0025526:28407-28426 | Msa1423270:intron | 20.0% |
| !! | TCTTTGAACTTAATACATAT+AGG | + | tig0025526:28570-28589 | Msa1423270:intron | 20.0% |
| !! | CTTTGAACTTAATACATATA+GGG | + | tig0025526:28571-28590 | Msa1423270:intron | 20.0% |
| !!! | AGATGTTTTTTATGTAAACT+GGG | + | tig0025526:28920-28939 | Msa1423270:CDS | 20.0% |
| !! | GGATAAACAAATTAATTAAG+CGG | - | tig0025526:29384-29403 | None:intergenic | 20.0% |
| !! | ACAAAAATGTAAAGAAACAT+TGG | - | tig0025526:29434-29453 | None:intergenic | 20.0% |
| !!! | ATGTTTCTTTACATTTTTGT+TGG | + | tig0025526:29434-29453 | Msa1423270:intron | 20.0% |
| !!! | GTTTTCATATGAATATAAGT+TGG | - | tig0025526:29891-29910 | None:intergenic | 20.0% |
| !! | AATAAACTATAGATTCAACA+AGG | - | tig0025526:30498-30517 | None:intergenic | 20.0% |
| !!! | CTTTTTTCATTTCTCAATTC+TGG | + | tig0025526:26335-26354 | Msa1423270:intron | 25.0% |
| !!! | ATTTGAGTTTTAGTGAGTAA+TGG | + | tig0025526:26501-26520 | Msa1423270:intron | 25.0% |
| !! | CATTGTTTTCATAAACTATC+CGG | + | tig0025526:26812-26831 | Msa1423270:intron | 25.0% |
| !! | ATTGTTTTCATAAACTATCC+GGG | + | tig0025526:26813-26832 | Msa1423270:intron | 25.0% |
| !!! | CTTATTTCTATAAGTTTTCC+CGG | - | tig0025526:26834-26853 | None:intergenic | 25.0% |
| ! | TATCAATATACTCTCTATCA+TGG | - | tig0025526:27331-27350 | None:intergenic | 25.0% |
| !! | CTAGACATGTTTAGTTTATT+AGG | - | tig0025526:27754-27773 | None:intergenic | 25.0% |
| ! | CTAATAAACTAAACATGTCT+AGG | + | tig0025526:27752-27771 | Msa1423270:intron | 25.0% |
| ! | CAATAGTGTAAAACAAACTT+GGG | - | tig0025526:27843-27862 | None:intergenic | 25.0% |
| ! | CTTTCTTTCTTTCTTGTAAT+TGG | + | tig0025526:28047-28066 | Msa1423270:intron | 25.0% |
| ! | TTCTTTCTTGTAATTGGTTA+AGG | + | tig0025526:28053-28072 | Msa1423270:intron | 25.0% |
| ! | TCTTTCTTGTAATTGGTTAA+GGG | + | tig0025526:28054-28073 | Msa1423270:intron | 25.0% |
| !! | TGTGGAACTACATTTTAAAT+AGG | + | tig0025526:28100-28119 | Msa1423270:intron | 25.0% |
| ! | TCTTATTCCTATATTGTCTT+GGG | - | tig0025526:28174-28193 | None:intergenic | 25.0% |
| ! | TTCTTATTCCTATATTGTCT+TGG | - | tig0025526:28175-28194 | None:intergenic | 25.0% |
| ! | TCATTGTCTCAAATTATTAC+TGG | - | tig0025526:28402-28421 | None:intergenic | 25.0% |
| !! | CTCAAATTTTCTTAATGGTT+TGG | - | tig0025526:28538-28557 | None:intergenic | 25.0% |
| ! | TTGTTGGAGTATATCAATTT+AGG | + | tig0025526:28667-28686 | Msa1423270:intron | 25.0% |
| !!! | TAGATAAATATAATGGGTTC+TGG | + | tig0025526:28814-28833 | Msa1423270:intron | 25.0% |
| !!! | AGATAAATATAATGGGTTCT+GGG | + | tig0025526:28815-28834 | Msa1423270:intron | 25.0% |
| !!! | GAGATGTTTTTTATGTAAAC+TGG | + | tig0025526:28919-28938 | Msa1423270:CDS | 25.0% |
| ! | GAACAAATGAGAAAGATTAA+CGG | + | tig0025526:29002-29021 | Msa1423270:CDS | 25.0% |
| !!! | TTAAGTCTTGTTTTATGGAA+GGG | - | tig0025526:29176-29195 | None:intergenic | 25.0% |
| !!! | TTTAAGTCTTGTTTTATGGA+AGG | - | tig0025526:29177-29196 | None:intergenic | 25.0% |
| ! | TGCTTATATATGACAGTTTA+TGG | - | tig0025526:29251-29270 | None:intergenic | 25.0% |
| ! | ATAAACTGTCATATATAAGC+AGG | + | tig0025526:29250-29269 | Msa1423270:intron | 25.0% |
| ! | AAGTTGAATGTTTACAGATA+TGG | + | tig0025526:29328-29347 | Msa1423270:intron | 25.0% |
| !!! | TTATCCAAATATAGCTTTAG+CGG | + | tig0025526:29398-29417 | Msa1423270:intron | 25.0% |
| ! | AAATGTAAAGAAACATTGGA+AGG | - | tig0025526:29430-29449 | None:intergenic | 25.0% |
| !! | CTGGTTTGTATATATACAAA+GGG | + | tig0025526:29457-29476 | Msa1423270:intron | 25.0% |
| ! | TGTATATATACAAAGGGAAA+TGG | + | tig0025526:29463-29482 | Msa1423270:intron | 25.0% |
| ! | ACTGAGATCAATATGAATTT+GGG | - | tig0025526:29635-29654 | None:intergenic | 25.0% |
| ! | AACTGAGATCAATATGAATT+TGG | - | tig0025526:29636-29655 | None:intergenic | 25.0% |
| ! | AATAGTTTCAAGATCATGAA+AGG | - | tig0025526:29770-29789 | None:intergenic | 25.0% |
| ! | TAATTAAGCACTTATCACAT+AGG | - | tig0025526:29985-30004 | None:intergenic | 25.0% |
| !! | TTTTACAATTGATCAGATCA+AGG | + | tig0025526:30350-30369 | Msa1423270:CDS | 25.0% |
| ! | TGCAATTGCAAATAGTATAA+AGG | + | tig0025526:30445-30464 | Msa1423270:three_prime_UTR | 25.0% |
| ! | GCAATTGCAAATAGTATAAA+GGG | + | tig0025526:30446-30465 | Msa1423270:three_prime_UTR | 25.0% |
| ! | ACAGAATAATAACACTTCTA+TGG | - | tig0025526:30632-30651 | None:intergenic | 25.0% |
| TTAAGCTCAACTCAACAAAA+TGG | + | tig0025526:26166-26185 | Msa1423270:exon | 30.0% | |
| !!! | TGATTTTTGAAATGCAAGGT+AGG | - | tig0025526:26275-26294 | None:intergenic | 30.0% |
| !!! | TCTGCTATTTTTCTACTGTT+TGG | + | tig0025526:26401-26420 | Msa1423270:intron | 30.0% |
| CCTCAGTAAAACAAATTTCA+TGG | - | tig0025526:26436-26455 | None:intergenic | 30.0% | |
| !!! | CCATGAAATTTGTTTTACTG+AGG | + | tig0025526:26433-26452 | Msa1423270:intron | 30.0% |
| CTCACTAAAACTCAAATTGA+TGG | - | tig0025526:26498-26517 | None:intergenic | 30.0% | |
| GTTAACGTAAACAACCATAA+TGG | - | tig0025526:26667-26686 | None:intergenic | 30.0% | |
| AGACTGTTTGGAAGAAATTA+CGG | - | tig0025526:26892-26911 | None:intergenic | 30.0% | |
| ATTGTCTTGTGATTAAAGAC+TGG | + | tig0025526:27000-27019 | Msa1423270:intron | 30.0% | |
| TTAGTAATCCATGGATCATA+GGG | + | tig0025526:27286-27305 | Msa1423270:intron | 30.0% | |
| TAGAAGTCATAAGCTTAAAC+AGG | + | tig0025526:27562-27581 | Msa1423270:CDS | 30.0% | |
| ACATAGAAGAGACAAATAGA+CGG | - | tig0025526:27622-27641 | None:intergenic | 30.0% | |
| TGCCGAGTAAAAAAAAAAGT+TGG | + | tig0025526:27801-27820 | Msa1423270:intron | 30.0% | |
| CCAATAGTGTAAAACAAACT+TGG | - | tig0025526:27844-27863 | None:intergenic | 30.0% | |
| !!! | CCAAGTTTGTTTTACACTAT+TGG | + | tig0025526:27841-27860 | Msa1423270:intron | 30.0% |
| TAGATCAAGTGAGATACAAT+GGG | - | tig0025526:27921-27940 | None:intergenic | 30.0% | |
| TTAGATCAAGTGAGATACAA+TGG | - | tig0025526:27922-27941 | None:intergenic | 30.0% | |
| TTGTATCTCACTTGATCTAA+TGG | + | tig0025526:27922-27941 | Msa1423270:intron | 30.0% | |
| GTAACTCATTGATGTAATGT+TGG | + | tig0025526:27946-27965 | Msa1423270:intron | 30.0% | |
| AAAACCATCTACATGTTTAG+TGG | - | tig0025526:28026-28045 | None:intergenic | 30.0% | |
| ! | TGCATATTTCAGTGTCTTTT+TGG | + | tig0025526:28438-28457 | Msa1423270:intron | 30.0% |
| TTCTTTATGGTAGCAATTGT+TGG | + | tig0025526:28651-28670 | Msa1423270:intron | 30.0% | |
| CTTATTTATAAGACCGTACT+TGG | - | tig0025526:28707-28726 | None:intergenic | 30.0% | |
| ! | CAAGTACGGTCTTATAAATA+AGG | + | tig0025526:28705-28724 | Msa1423270:intron | 30.0% |
| !!! | TGATCTCAGTATCTTTTTTC+TGG | + | tig0025526:28865-28884 | Msa1423270:intron | 30.0% |
| TTGTAAACAGCACATAACAA+TGG | - | tig0025526:29209-29228 | None:intergenic | 30.0% | |
| !! | ATTGTTATGTGCTGTTTACA+AGG | + | tig0025526:29208-29227 | Msa1423270:intron | 30.0% |
| AATGTTTACAGATATGGAGA+TGG | + | tig0025526:29334-29353 | Msa1423270:intron | 30.0% | |
| ! | TTCTTTACATTTTTGTTGGC+TGG | + | tig0025526:29438-29457 | Msa1423270:intron | 30.0% |
| !! | GCTGGTTTGTATATATACAA+AGG | + | tig0025526:29456-29475 | Msa1423270:intron | 30.0% |
| TATATGAAGTACGTTATGTC+TGG | + | tig0025526:29503-29522 | Msa1423270:intron | 30.0% | |
| ATATGAAGTACGTTATGTCT+GGG | + | tig0025526:29504-29523 | Msa1423270:intron | 30.0% | |
| !! | ACCATCGTTTTTACTTTCAT+CGG | + | tig0025526:29670-29689 | Msa1423270:CDS | 30.0% |
| AGATTATTTGAGAGAGCTTA+TGG | + | tig0025526:29794-29813 | Msa1423270:intron | 30.0% | |
| AGTAAGCTAAAAACAGCTTA+TGG | - | tig0025526:29838-29857 | None:intergenic | 30.0% | |
| TTATCCAAACAGAACATTGA+AGG | + | tig0025526:30011-30030 | Msa1423270:intron | 30.0% | |
| TTAAGACCAGGATTCATATA+TGG | + | tig0025526:30126-30145 | Msa1423270:CDS | 30.0% | |
| ! | CTTTTACCATATATGAATCC+TGG | - | tig0025526:30135-30154 | None:intergenic | 30.0% |
| CAGGATTCATATATGGTAAA+AGG | + | tig0025526:30133-30152 | Msa1423270:CDS | 30.0% | |
| !!! | GATTTTAGAATTCTTTCAGC+TGG | - | tig0025526:30201-30220 | None:intergenic | 30.0% |
| TTATACCCTTACTTTATCAG+CGG | - | tig0025526:30379-30398 | None:intergenic | 30.0% | |
| CTATTTGCAATTGCAGAATT+TGG | - | tig0025526:30440-30459 | None:intergenic | 30.0% | |
| ! | TAAAGGGAGTGTAAAAAATG+AGG | + | tig0025526:30462-30481 | Msa1423270:three_prime_UTR | 30.0% |
| GTTTATTACTCTGCAGTATT+TGG | + | tig0025526:30511-30530 | Msa1423270:three_prime_UTR | 30.0% | |
| ATAAAGTCACAAGTGGATAA+AGG | - | tig0025526:30672-30691 | None:intergenic | 30.0% | |
| AGAAAAAGAAACATCCACCA+CGG | - | tig0025526:26082-26101 | None:intergenic | 35.0% | |
| !!! | TTTTTGAAATGCAAGGTAGG+TGG | - | tig0025526:26272-26291 | None:intergenic | 35.0% |
| !!! | CCTGTGATTTTTGAAATGCA+AGG | - | tig0025526:26279-26298 | None:intergenic | 35.0% |
| CCTTGCATTTCAAAAATCAC+AGG | + | tig0025526:26276-26295 | Msa1423270:CDS | 35.0% | |
| CTCACATGCAACACATAATT+TGG | - | tig0025526:26689-26708 | None:intergenic | 35.0% | |
| GACATCAACTATAGATGTTG+TGG | + | tig0025526:27136-27155 | Msa1423270:CDS | 35.0% | |
| TGCTTAAATATGTCCCTTTG+TGG | + | tig0025526:27261-27280 | Msa1423270:intron | 35.0% | |
| TGGATTACTAACACCACAAA+GGG | - | tig0025526:27277-27296 | None:intergenic | 35.0% | |
| ! | ATGGATTACTAACACCACAA+AGG | - | tig0025526:27278-27297 | None:intergenic | 35.0% |
| ! | TTTGTGGTGTTAGTAATCCA+TGG | + | tig0025526:27277-27296 | Msa1423270:intron | 35.0% |
| GTTAGTAATCCATGGATCAT+AGG | + | tig0025526:27285-27304 | Msa1423270:intron | 35.0% | |
| TATATTGATACTCATGCGAC+TGG | + | tig0025526:27341-27360 | Msa1423270:intron | 35.0% | |
| ! | ATTTAGATTGTAGTCTTGGG+AGG | + | tig0025526:27489-27508 | Msa1423270:intron | 35.0% |
| ATAGAAGAGACAAATAGACG+GGG | - | tig0025526:27620-27639 | None:intergenic | 35.0% | |
| CATAGAAGAGACAAATAGAC+GGG | - | tig0025526:27621-27640 | None:intergenic | 35.0% | |
| !! | CGACTGAGATTTTGTTTAAC+AGG | + | tig0025526:27660-27679 | Msa1423270:intron | 35.0% |
| !! | GAGATTTTGTTTAACAGGTC+AGG | + | tig0025526:27665-27684 | Msa1423270:intron | 35.0% |
| ATCCATGAATCTGAGTAAGT+AGG | - | tig0025526:27695-27714 | None:intergenic | 35.0% | |
| ACTAAACATGTCTAGGTCTA+TGG | + | tig0025526:27759-27778 | Msa1423270:intron | 35.0% | |
| TGGATCAAGTGAGATACAAT+GGG | - | tig0025526:27877-27896 | None:intergenic | 35.0% | |
| TTGGATCAAGTGAGATACAA+TGG | - | tig0025526:27878-27897 | None:intergenic | 35.0% | |
| TTGTATCTCACTTGATCCAA+TGG | + | tig0025526:27878-27897 | Msa1423270:intron | 35.0% | |
| CTTAATGATCGTTACACCAT+TGG | - | tig0025526:27897-27916 | None:intergenic | 35.0% | |
| AAAGAGTAGAACCTTGTCTA+AGG | + | tig0025526:28240-28259 | Msa1423270:intron | 35.0% | |
| AAGAGTAGAACCTTGTCTAA+GGG | + | tig0025526:28241-28260 | Msa1423270:intron | 35.0% | |
| TGTTTAAACACCCTTAGACA+AGG | - | tig0025526:28254-28273 | None:intergenic | 35.0% | |
| !! | TAAGGGTGTTTAAACATGTG+CGG | + | tig0025526:28258-28277 | Msa1423270:intron | 35.0% |
| ATCCAGTCAAACCTTCTTAT+CGG | - | tig0025526:28302-28321 | None:intergenic | 35.0% | |
| !! | TTTCAGTGTCTTTTTGGTGT+TGG | + | tig0025526:28444-28463 | Msa1423270:intron | 35.0% |
| AGAGGGAGACAAAAAATCTA+CGG | + | tig0025526:28511-28530 | Msa1423270:intron | 35.0% | |
| GTACTGCTGTATCTTCTTTA+TGG | + | tig0025526:28638-28657 | Msa1423270:intron | 35.0% | |
| ATCTGGTTAGAGAGAACAAT+GGG | - | tig0025526:28732-28751 | None:intergenic | 35.0% | |
| TATCTGGTTAGAGAGAACAA+TGG | - | tig0025526:28733-28752 | None:intergenic | 35.0% | |
| TTCTCTCTAACCAGATATTC+TGG | + | tig0025526:28736-28755 | Msa1423270:intron | 35.0% | |
| CATAAATCAGCCAGAATATC+TGG | - | tig0025526:28749-28768 | None:intergenic | 35.0% | |
| AAAAACATCTCCTGCACATT+AGG | - | tig0025526:28910-28929 | None:intergenic | 35.0% | |
| GTAAATGCTGCAAACGAATA+TGG | + | tig0025526:29044-29063 | Msa1423270:CDS | 35.0% | |
| CAAAATAACGCTCAATGAGA+TGG | - | tig0025526:29074-29093 | None:intergenic | 35.0% | |
| AGGGAATGCATGAAAGTTTA+TGG | - | tig0025526:29157-29176 | None:intergenic | 35.0% | |
| CTAACCGCTAAAGCTATATT+TGG | - | tig0025526:29405-29424 | None:intergenic | 35.0% | |
| !! | CCATCGTTTTTACTTTCATC+GGG | + | tig0025526:29671-29690 | Msa1423270:CDS | 35.0% |
| !! | CATCGTTTTTACTTTCATCG+GGG | + | tig0025526:29672-29691 | Msa1423270:CDS | 35.0% |
| AAAGAGAAAAGCAGAATCTG+AGG | + | tig0025526:29706-29725 | Msa1423270:CDS | 35.0% | |
| ! | GTTGGTTTCATATGCTATCT+TGG | - | tig0025526:29873-29892 | None:intergenic | 35.0% |
| ATGTCCTTCAATGTTCTGTT+TGG | - | tig0025526:30018-30037 | None:intergenic | 35.0% | |
| !! | CAGTGAATTTTCGAGAATGA+AGG | - | tig0025526:30078-30097 | None:intergenic | 35.0% |
| TGAAAAATCCCAACATCTTC+AGG | + | tig0025526:30096-30115 | Msa1423270:intron | 35.0% | |
| AGACAATACCTGAAGATGTT+GGG | - | tig0025526:30107-30126 | None:intergenic | 35.0% | |
| AAGACAATACCTGAAGATGT+TGG | - | tig0025526:30108-30127 | None:intergenic | 35.0% | |
| TATGGTAAAAGGAGAGTTGA+TGG | + | tig0025526:30144-30163 | Msa1423270:CDS | 35.0% | |
| AGATTCCCTTGGATTTAGTA+GGG | + | tig0025526:30172-30191 | Msa1423270:CDS | 35.0% | |
| !! | TAGTGTTGATGATGTTGCAT+TGG | + | tig0025526:30287-30306 | Msa1423270:CDS | 35.0% |
| GAAAAAGAAACATCCACCAC+GGG | - | tig0025526:26081-26100 | None:intergenic | 40.0% | |
| ACCTCGTGAAGATGATTAAG+CGG | - | tig0025526:26140-26159 | None:intergenic | 40.0% | |
| AAGACACTTGTGAGACTGTT+TGG | - | tig0025526:26904-26923 | None:intergenic | 40.0% | |
| AACTTAGAGCTTGGTTGGAT+TGG | - | tig0025526:26952-26971 | None:intergenic | 40.0% | |
| AGCAAAACTTAGAGCTTGGT+TGG | - | tig0025526:26957-26976 | None:intergenic | 40.0% | |
| AGGAAGCAAAACTTAGAGCT+TGG | - | tig0025526:26961-26980 | None:intergenic | 40.0% | |
| TTTGCTTCCTCTTTGCAATG+TGG | + | tig0025526:26971-26990 | Msa1423270:intron | 40.0% | |
| TTGCTTCCTCTTTGCAATGT+GGG | + | tig0025526:26972-26991 | Msa1423270:intron | 40.0% | |
| ACAGCTAACTGCAAATCTAC+AGG | - | tig0025526:27078-27097 | None:intergenic | 40.0% | |
| GGCTGATGTTATAAGCGAAA+AGG | + | tig0025526:27157-27176 | Msa1423270:CDS | 40.0% | |
| GTCCTACTTACTCAGATTCA+TGG | + | tig0025526:27690-27709 | Msa1423270:CDS | 40.0% | |
| CTCAGATTCATGGATAGATC+AGG | + | tig0025526:27700-27719 | Msa1423270:CDS | 40.0% | |
| CATGGATAGATCAGGTTACT+TGG | + | tig0025526:27708-27727 | Msa1423270:CDS | 40.0% | |
| GATCAGGTTACTTGGATTTC+AGG | + | tig0025526:27716-27735 | Msa1423270:CDS | 40.0% | |
| GTGTAAAACAAACTTGGGCA+TGG | - | tig0025526:27838-27857 | None:intergenic | 40.0% | |
| CTTGCCACTAAACATGTAGA+TGG | + | tig0025526:28019-28038 | Msa1423270:intron | 40.0% | |
| ! | ATAGGTGTTGTACAAACGAG+TGG | + | tig0025526:28145-28164 | Msa1423270:intron | 40.0% |
| TCATAGGACTACCGATAAGA+AGG | + | tig0025526:28288-28307 | Msa1423270:intron | 40.0% | |
| TACCGATAAGAAGGTTTGAC+TGG | + | tig0025526:28297-28316 | Msa1423270:intron | 40.0% | |
| AAGAAGGTTTGACTGGATGA+TGG | + | tig0025526:28304-28323 | Msa1423270:intron | 40.0% | |
| AGTGCAATCTTCAGATGTAG+AGG | + | tig0025526:28329-28348 | Msa1423270:intron | 40.0% | |
| GTGCAATCTTCAGATGTAGA+GGG | + | tig0025526:28330-28349 | Msa1423270:intron | 40.0% | |
| ! | TCAAATTATTACTGGTGCCG+AGG | - | tig0025526:28394-28413 | None:intergenic | 40.0% |
| TGTAGTACCAACACTTCAGA+TGG | - | tig0025526:28486-28505 | None:intergenic | 40.0% | |
| !! | CTGAAGTGTTGGTACTACAT+AGG | + | tig0025526:28487-28506 | Msa1423270:intron | 40.0% |
| TGTTGGTACTACATAGGTAG+AGG | + | tig0025526:28493-28512 | Msa1423270:intron | 40.0% | |
| GTTGGTACTACATAGGTAGA+GGG | + | tig0025526:28494-28513 | Msa1423270:intron | 40.0% | |
| GAGGGAGACAAAAAATCTAC+GGG | + | tig0025526:28512-28531 | Msa1423270:intron | 40.0% | |
| AGCTGTATCACACTCTATGT+GGG | - | tig0025526:28615-28634 | None:intergenic | 40.0% | |
| AAGCTGTATCACACTCTATG+TGG | - | tig0025526:28616-28635 | None:intergenic | 40.0% | |
| ACATAGAGTGTGATACAGCT+TGG | + | tig0025526:28615-28634 | Msa1423270:intron | 40.0% | |
| CATAGAGTGTGATACAGCTT+GGG | + | tig0025526:28616-28635 | Msa1423270:intron | 40.0% | |
| CAAGACATACAGACCAAGTA+CGG | + | tig0025526:28691-28710 | Msa1423270:intron | 40.0% | |
| AATGAGAAAGATTAACGGCG+AGG | + | tig0025526:29007-29026 | Msa1423270:CDS | 40.0% | |
| !! | GTTATGTGCTGTTTACAAGG+CGG | + | tig0025526:29211-29230 | Msa1423270:intron | 40.0% |
| !! | TTATGTGCTGTTTACAAGGC+GGG | + | tig0025526:29212-29231 | Msa1423270:intron | 40.0% |
| GGGAAATGGTTTGATGCTTA+TGG | + | tig0025526:29477-29496 | Msa1423270:intron | 40.0% | |
| TGAATTTGGGAATTCCTGCA+AGG | - | tig0025526:29622-29641 | None:intergenic | 40.0% | |
| CCCGATGAAAGTAAAAACGA+TGG | - | tig0025526:29674-29693 | None:intergenic | 40.0% | |
| TCGAATAGTGACCTGAACTA+GGG | - | tig0025526:29745-29764 | None:intergenic | 40.0% | |
| ATCGAATAGTGACCTGAACT+AGG | - | tig0025526:29746-29765 | None:intergenic | 40.0% | |
| ATGCTATCTTGGAGAGCTTA+TGG | - | tig0025526:29862-29881 | None:intergenic | 40.0% | |
| ! | TCAGGTATTGTCTTAAGACC+AGG | + | tig0025526:30114-30133 | Msa1423270:intron | 40.0% |
| !!! | TGATGGTTTTGAGATTCCCT+TGG | + | tig0025526:30161-30180 | Msa1423270:CDS | 40.0% |
| GAGATTCCCTTGGATTTAGT+AGG | + | tig0025526:30171-30190 | Msa1423270:CDS | 40.0% | |
| GATTCCCTTGGATTTAGTAG+GGG | + | tig0025526:30173-30192 | Msa1423270:CDS | 40.0% | |
| ! | ACCTGCTTCTGATCTACTTT+TGG | + | tig0025526:30254-30273 | Msa1423270:CDS | 40.0% |
| ACATCATCAACACTAACAGG+TGG | - | tig0025526:30282-30301 | None:intergenic | 40.0% | |
| GCAACATCATCAACACTAAC+AGG | - | tig0025526:30285-30304 | None:intergenic | 40.0% | |
| !! | GTTGCATTGGCTGTTATCAA+TGG | + | tig0025526:30300-30319 | Msa1423270:CDS | 40.0% |
| GTATAATCCACGTACATGTC+TGG | + | tig0025526:30393-30412 | Msa1423270:exon | 40.0% | |
| !! | TACATGTCTGGTGTCATACT+AGG | + | tig0025526:30405-30424 | Msa1423270:three_prime_UTR | 40.0% |
| TTGGAGATCCTCCTTATCTT+AGG | + | tig0025526:30530-30549 | Msa1423270:three_prime_UTR | 40.0% | |
| TGGAGATCCTCCTTATCTTA+GGG | + | tig0025526:30531-30550 | Msa1423270:three_prime_UTR | 40.0% | |
| ATCACTGTTCCCCTAAGATA+AGG | - | tig0025526:30544-30563 | None:intergenic | 40.0% | |
| AAGTCACAAGTGGATAAAGG+TGG | - | tig0025526:30669-30688 | None:intergenic | 40.0% | |
| ACCGCTTAATCATCTTCACG+AGG | + | tig0025526:26136-26155 | Msa1423270:five_prime_UTR | 45.0% | |
| CGTTTGAGAGAGAAAACGGT+GGG | - | tig0025526:26233-26252 | None:intergenic | 45.0% | |
| TCGTTTGAGAGAGAAAACGG+TGG | - | tig0025526:26234-26253 | None:intergenic | 45.0% | |
| GGGTCGTTTGAGAGAGAAAA+CGG | - | tig0025526:26237-26256 | None:intergenic | 45.0% | |
| TCAAGACCCACATTGCAAAG+AGG | - | tig0025526:26981-27000 | None:intergenic | 45.0% | |
| GCAGTTAGCTGTAGTTATGC+AGG | + | tig0025526:27086-27105 | Msa1423270:CDS | 45.0% | |
| GTAATCCATGGATCATAGGG+AGG | + | tig0025526:27289-27308 | Msa1423270:intron | 45.0% | |
| ATCTTCCTCCCTATGATCCA+TGG | - | tig0025526:27297-27316 | None:intergenic | 45.0% | |
| ! | ATTGTAGTCTTGGGAGGCAA+TGG | + | tig0025526:27495-27514 | Msa1423270:CDS | 45.0% |
| ! | TTGTAGTCTTGGGAGGCAAT+GGG | + | tig0025526:27496-27515 | Msa1423270:CDS | 45.0% |
| !! | TGTTGGTTCTGCGATATGCA+AGG | + | tig0025526:27521-27540 | Msa1423270:CDS | 45.0% |
| GCTTATGACTTCTATGCCCT+TGG | - | tig0025526:27556-27575 | None:intergenic | 45.0% | |
| GAAACACCTGCAACTTTGTG+TGG | + | tig0025526:28082-28101 | Msa1423270:intron | 45.0% | |
| GTAGTTCCACACAAAGTTGC+AGG | - | tig0025526:28091-28110 | None:intergenic | 45.0% | |
| GTGGTCACCCAAGACAATAT+AGG | + | tig0025526:28164-28183 | Msa1423270:intron | 45.0% | |
| CATGTGCGGAAAAGACTCAT+AGG | + | tig0025526:28272-28291 | Msa1423270:intron | 45.0% | |
| ATGTAGAGGGCTATGAAGCA+CGG | + | tig0025526:28343-28362 | Msa1423270:intron | 45.0% | |
| ! | ACGTCTTCCATCTGAAGTGT+TGG | + | tig0025526:28476-28495 | Msa1423270:intron | 45.0% |
| !! | TATAATGGGTTCTGGGCTTC+TGG | + | tig0025526:28822-28841 | Msa1423270:intron | 45.0% |
| CAGTGTTATGCCTAATGTGC+AGG | + | tig0025526:28897-28916 | Msa1423270:intron | 45.0% | |
| TGAGACGTGAATAGCACATC+TGG | - | tig0025526:29583-29602 | None:intergenic | 45.0% | |
| ! | TGTGCTATTCACGTCTCACA+CGG | + | tig0025526:29585-29604 | Msa1423270:intron | 45.0% |
| CTATCCAAGTTCCCTAGTTC+AGG | + | tig0025526:29731-29750 | Msa1423270:CDS | 45.0% | |
| GCCAAAAGTAGATCAGAAGC+AGG | - | tig0025526:30258-30277 | None:intergenic | 45.0% | |
| CTCACAGATGACGACTTCTT+TGG | + | tig0025526:30324-30343 | Msa1423270:CDS | 45.0% | |
| AGGAAGCCGCTGATAAAGTA+AGG | + | tig0025526:30370-30389 | Msa1423270:CDS | 45.0% | |
| GGAAGCCGCTGATAAAGTAA+GGG | + | tig0025526:30371-30390 | Msa1423270:CDS | 45.0% | |
| TATGACACCAGACATGTACG+TGG | - | tig0025526:30403-30422 | None:intergenic | 45.0% | |
| GGAGATCCTCCTTATCTTAG+GGG | + | tig0025526:30532-30551 | Msa1423270:three_prime_UTR | 45.0% | |
| ACTGTTCCCCTAAGATAAGG+AGG | - | tig0025526:30541-30560 | None:intergenic | 45.0% | |
| TAGGGGAACAGTGATTGCTA+AGG | + | tig0025526:30549-30568 | Msa1423270:three_prime_UTR | 45.0% | |
| AGGGGAACAGTGATTGCTAA+GGG | + | tig0025526:30550-30569 | Msa1423270:three_prime_UTR | 45.0% | |
| TGAGACGAGGAGAAACAGCA+GGG | - | tig0025526:26208-26227 | None:intergenic | 50.0% | |
| ATGAGACGAGGAGAAACAGC+AGG | - | tig0025526:26209-26228 | None:intergenic | 50.0% | |
| AAAACGGTGGGAATGAGACG+AGG | - | tig0025526:26221-26240 | None:intergenic | 50.0% | |
| GTAGGTGGAGTGTGAGTGAA+GGG | - | tig0025526:26257-26276 | None:intergenic | 50.0% | |
| AGCTGTAGTTATGCAGGAGC+AGG | + | tig0025526:27092-27111 | Msa1423270:CDS | 50.0% | |
| AGTTATGCAGGAGCAGGTGT+TGG | + | tig0025526:27098-27117 | Msa1423270:CDS | 50.0% | |
| ! | TTGGGAGGCAATGGGTTTGT+TGG | + | tig0025526:27504-27523 | Msa1423270:CDS | 50.0% |
| ATGCAAGGCAGCAGTATCCA+AGG | + | tig0025526:27536-27555 | Msa1423270:CDS | 50.0% | |
| TGCAAGGCAGCAGTATCCAA+GGG | + | tig0025526:27537-27556 | Msa1423270:CDS | 50.0% | |
| CAGACATGAGACTGACACCT+CGG | + | tig0025526:28374-28393 | Msa1423270:intron | 50.0% | |
| ! | AACTGGGACGAAGTACTTCC+TGG | + | tig0025526:28936-28955 | Msa1423270:CDS | 50.0% |
| ACTGCAGTAGTCTCAACCCT+CGG | + | tig0025526:28963-28982 | Msa1423270:CDS | 50.0% | |
| TAACGGCGAGGCTAATGTTG+TGG | + | tig0025526:29019-29038 | Msa1423270:CDS | 50.0% | |
| ! | CGGCTGTTCTTTTACCTTGC+AGG | + | tig0025526:29605-29624 | Msa1423270:intron | 50.0% |
| ! | CTTTCATCGGGGTACTTCAC+AGG | + | tig0025526:29683-29702 | Msa1423270:CDS | 50.0% |
| GTGACCTGAACTAGGGAACT+TGG | - | tig0025526:29738-29757 | None:intergenic | 50.0% | |
| GGCTCCCCTACTAAATCCAA+GGG | - | tig0025526:30180-30199 | None:intergenic | 50.0% | |
| TGGCTCCCCTACTAAATCCA+AGG | - | tig0025526:30181-30200 | None:intergenic | 50.0% | |
| GAAGCAGGTAGTGCGCTTAA+TGG | - | tig0025526:30243-30262 | None:intergenic | 50.0% | |
| GGGGAACAGTGATTGCTAAG+GGG | + | tig0025526:30551-30570 | Msa1423270:three_prime_UTR | 50.0% | |
| GGGAACAGTGATTGCTAAGG+GGG | + | tig0025526:30552-30571 | Msa1423270:three_prime_UTR | 50.0% | |
| CAAACCGTCACTGTTTCCCG+TGG | + | tig0025526:26062-26081 | Msa1423270:five_prime_UTR | 55.0% | |
| TCCACCACGGGAAACAGTGA+CGG | - | tig0025526:26069-26088 | None:intergenic | 55.0% | |
| GGTAGGTGGAGTGTGAGTGA+AGG | - | tig0025526:26258-26277 | None:intergenic | 55.0% | |
| GAGACTACTGCAGTAGCTCC+AGG | - | tig0025526:28957-28976 | None:intergenic | 55.0% | |
| ! | GTCTCAACCCTCGGAGGTTT+TGG | + | tig0025526:28972-28991 | Msa1423270:CDS | 55.0% |
| CTCGCTACCAAAACCTCCGA+GGG | - | tig0025526:28982-29001 | None:intergenic | 55.0% | |
| ACCGTCACTGTTTCCCGTGG+TGG | + | tig0025526:26065-26084 | Msa1423270:five_prime_UTR | 60.0% | |
| GCAGTAGTCTCAACCCTCGG+AGG | + | tig0025526:28966-28985 | Msa1423270:CDS | 60.0% | |
| CCTCGCTACCAAAACCTCCG+AGG | - | tig0025526:28983-29002 | None:intergenic | 60.0% | |
| !!! | CCTCGGAGGTTTTGGTAGCG+AGG | + | tig0025526:28980-28999 | Msa1423270:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025526 | gene | 26058 | 30691 | 26058 | ID=Msa1423270;Name=Msa1423270 |
| tig0025526 | mRNA | 26058 | 30691 | 26058 | ID=Msa1423270-mRNA-1;Parent=Msa1423270;Name=Msa1423270-mRNA-1;_AED=0.23;_eAED=0.23;_QI=127|1|1|1|1|1|7|293|302 |
| tig0025526 | exon | 26058 | 26297 | 26058 | ID=Msa1423270-mRNA-1:exon:3115;Parent=Msa1423270-mRNA-1 |
| tig0025526 | exon | 27082 | 27178 | 27082 | ID=Msa1423270-mRNA-1:exon:3116;Parent=Msa1423270-mRNA-1 |
| tig0025526 | exon | 27495 | 27583 | 27495 | ID=Msa1423270-mRNA-1:exon:3117;Parent=Msa1423270-mRNA-1 |
| tig0025526 | exon | 27682 | 27737 | 27682 | ID=Msa1423270-mRNA-1:exon:3118;Parent=Msa1423270-mRNA-1 |
| tig0025526 | exon | 28919 | 29065 | 28919 | ID=Msa1423270-mRNA-1:exon:3119;Parent=Msa1423270-mRNA-1 |
| tig0025526 | exon | 29627 | 29752 | 29627 | ID=Msa1423270-mRNA-1:exon:3120;Parent=Msa1423270-mRNA-1 |
| tig0025526 | exon | 30118 | 30691 | 30118 | ID=Msa1423270-mRNA-1:exon:3121;Parent=Msa1423270-mRNA-1 |
| tig0025526 | five_prime_UTR | 26058 | 26184 | 26058 | ID=Msa1423270-mRNA-1:five_prime_utr;Parent=Msa1423270-mRNA-1 |
| tig0025526 | CDS | 26185 | 26297 | 26185 | ID=Msa1423270-mRNA-1:cds;Parent=Msa1423270-mRNA-1 |
| tig0025526 | CDS | 27082 | 27178 | 27082 | ID=Msa1423270-mRNA-1:cds;Parent=Msa1423270-mRNA-1 |
| tig0025526 | CDS | 27495 | 27583 | 27495 | ID=Msa1423270-mRNA-1:cds;Parent=Msa1423270-mRNA-1 |
| tig0025526 | CDS | 27682 | 27737 | 27682 | ID=Msa1423270-mRNA-1:cds;Parent=Msa1423270-mRNA-1 |
| tig0025526 | CDS | 28919 | 29065 | 28919 | ID=Msa1423270-mRNA-1:cds;Parent=Msa1423270-mRNA-1 |
| tig0025526 | CDS | 29627 | 29752 | 29627 | ID=Msa1423270-mRNA-1:cds;Parent=Msa1423270-mRNA-1 |
| tig0025526 | CDS | 30118 | 30398 | 30118 | ID=Msa1423270-mRNA-1:cds;Parent=Msa1423270-mRNA-1 |
| tig0025526 | three_prime_UTR | 30399 | 30691 | 30399 | ID=Msa1423270-mRNA-1:three_prime_utr;Parent=Msa1423270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
