Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716350 | XP_003611962.2 | 94.889 | 450 | 17 | 1 | 1 | 444 | 1 | 450 | 0.0 | 825 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716350 | sp|Q9LVQ8|P2C80_ARATH | 53.483 | 402 | 168 | 7 | 47 | 441 | 25 | 414 | 2.31e-131 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716350 | G7KC88 | 94.889 | 450 | 17 | 1 | 1 | 444 | 1 | 450 | 0.0 | 825 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030000 | Msa0716350 | 0.816293 | 5.957451e-52 | -8.615850e-47 |
| Msa0043680 | Msa0716350 | 0.824594 | 7.418757e-54 | -8.615850e-47 |
| Msa0076550 | Msa0716350 | 0.800135 | 1.661487e-48 | -8.615850e-47 |
| Msa0092660 | Msa0716350 | 0.806194 | 9.260295e-50 | -8.615850e-47 |
| Msa0092680 | Msa0716350 | 0.814079 | 1.848822e-51 | -8.615850e-47 |
| Msa0112340 | Msa0716350 | 0.800792 | 1.220527e-48 | -8.615850e-47 |
| Msa0606140 | Msa0716350 | 0.804482 | 2.115399e-49 | -8.615850e-47 |
| Msa0657220 | Msa0716350 | 0.802368 | 5.799513e-49 | -8.615850e-47 |
| Msa0716350 | Msa0720000 | 0.811726 | 6.061219e-51 | -8.615850e-47 |
| Msa0716350 | Msa0743100 | 0.804069 | 2.578528e-49 | -8.615850e-47 |
| Msa0716350 | Msa0870010 | 0.839489 | 1.536795e-57 | -8.615850e-47 |
| Msa0716350 | Msa0875360 | 0.854055 | 1.587512e-61 | -8.615850e-47 |
| Msa0716350 | Msa0906300 | 0.800855 | 1.185091e-48 | -8.615850e-47 |
| Msa0716350 | Msa0906720 | 0.814149 | 1.784357e-51 | -8.615850e-47 |
| Msa0716350 | Msa0922550 | 0.821252 | 4.456430e-53 | -8.615850e-47 |
| Msa0716350 | Msa0926860 | 0.843549 | 1.308687e-58 | -8.615850e-47 |
| Msa0716350 | Msa0938970 | 0.801673 | 8.059187e-49 | -8.615850e-47 |
| Msa0716350 | Msa0975910 | 0.814845 | 1.251991e-51 | -8.615850e-47 |
| Msa0716350 | Msa0992590 | 0.827117 | 1.867048e-54 | -8.615850e-47 |
| Msa0716350 | Msa1028460 | 0.823070 | 1.688495e-53 | -8.615850e-47 |
| Msa0716350 | Msa1264110 | 0.836809 | 7.525075e-57 | -8.615850e-47 |
| Msa0716350 | Msa1344350 | -0.808401 | 3.153140e-50 | -8.615850e-47 |
| Msa0716350 | Msa1367940 | 0.814892 | 1.222527e-51 | -8.615850e-47 |
| Msa0716350 | Msa1375630 | 0.838051 | 3.617486e-57 | -8.615850e-47 |
| Msa0716350 | Msa1376530 | 0.863460 | 2.450834e-64 | -8.615850e-47 |
| Msa0716350 | Msa1376640 | 0.811690 | 6.170656e-51 | -8.615850e-47 |
| Msa0716350 | Msa1414970 | 0.988366 | 9.772259e-174 | -8.615850e-47 |
| Msa0716350 | Msa1460650 | 0.811954 | 5.405842e-51 | -8.615850e-47 |
| Msa0125230 | Msa0716350 | 0.806573 | 7.702812e-50 | -8.615850e-47 |
| Msa0139740 | Msa0716350 | 0.810024 | 1.415802e-50 | -8.615850e-47 |
| Msa0185550 | Msa0716350 | 0.802015 | 6.855542e-49 | -8.615850e-47 |
| Msa0209780 | Msa0716350 | 0.843644 | 1.234013e-58 | -8.615850e-47 |
| Msa0230400 | Msa0716350 | 0.802264 | 6.091209e-49 | -8.615850e-47 |
| Msa0380420 | Msa0716350 | 0.844069 | 9.498263e-59 | -8.615850e-47 |
| Msa0417630 | Msa0716350 | 0.813348 | 2.679085e-51 | -8.615850e-47 |
| Msa0434630 | Msa0716350 | 0.801141 | 1.035770e-48 | -8.615850e-47 |
| Msa0459960 | Msa0716350 | 0.835411 | 1.704881e-56 | -8.615850e-47 |
| Msa0477780 | Msa0716350 | 0.840435 | 8.711848e-58 | -8.615850e-47 |
| Msa0290600 | Msa0716350 | 0.817484 | 3.219010e-52 | -8.615850e-47 |
| Msa0524090 | Msa0716350 | 0.812654 | 3.803199e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716350 | MtrunA17_Chr5g0403781 | 94.889 | 450 | 17 | 1 | 1 | 444 | 1 | 450 | 0.0 | 825 |
| Msa0716350 | MtrunA17_Chr1g0154711 | 64.952 | 311 | 92 | 5 | 139 | 441 | 204 | 505 | 1.62e-132 | 391 |
| Msa0716350 | MtrunA17_Chr2g0278991 | 35.827 | 254 | 157 | 4 | 190 | 441 | 1041 | 1290 | 3.91e-40 | 154 |
| Msa0716350 | MtrunA17_Chr3g0106291 | 37.891 | 256 | 137 | 7 | 200 | 441 | 62 | 309 | 1.01e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0716350 | AT5G66720.1 | 53.483 | 402 | 168 | 7 | 47 | 441 | 25 | 414 | 2.35e-132 | 388 |
| Msa0716350 | AT5G66720.2 | 53.483 | 402 | 165 | 7 | 47 | 441 | 25 | 411 | 7.04e-132 | 387 |
| Msa0716350 | AT4G16580.1 | 63.051 | 295 | 103 | 2 | 155 | 444 | 171 | 464 | 5.64e-129 | 381 |
| Msa0716350 | AT4G33500.1 | 38.129 | 278 | 153 | 4 | 176 | 438 | 446 | 719 | 2.34e-49 | 179 |
| Msa0716350 | AT2G30170.1 | 35.849 | 265 | 147 | 8 | 192 | 441 | 42 | 298 | 4.70e-45 | 159 |
| Msa0716350 | AT2G30170.6 | 38.974 | 195 | 111 | 6 | 192 | 382 | 7 | 197 | 9.26e-38 | 137 |
| Msa0716350 | AT2G30170.3 | 34.934 | 229 | 127 | 7 | 227 | 441 | 1 | 221 | 2.25e-37 | 136 |
| Msa0716350 | AT2G30170.5 | 38.974 | 195 | 111 | 6 | 192 | 382 | 42 | 232 | 3.08e-37 | 137 |
| Msa0716350 | AT2G30170.7 | 38.365 | 159 | 91 | 5 | 227 | 382 | 1 | 155 | 6.21e-30 | 115 |
| Msa0716350 | AT2G30170.4 | 38.255 | 149 | 87 | 4 | 192 | 337 | 42 | 188 | 5.15e-27 | 108 |
| Msa0716350 | AT2G30170.2 | 34.641 | 153 | 82 | 4 | 301 | 441 | 12 | 158 | 1.65e-21 | 91.3 |
Find 121 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCACTAAATGCTATTAATT+TGG | 0.082909 | 5_1:-9809364 | Msa0716350:CDS |
| TTCACCTTCCAATGCTATTC+TGG | 0.118484 | 5_1:-9811488 | Msa0716350:CDS |
| TTGCAGATGGTGTTGGTGGC+TGG | 0.202067 | 5_1:-9810064 | Msa0716350:CDS |
| TGTATGGTCCTTTGAATTTC+GGG | 0.205284 | 5_1:-9811324 | Msa0716350:CDS |
| TTGTATGGTCCTTTGAATTT+CGG | 0.224793 | 5_1:-9811325 | Msa0716350:CDS |
| ACCTAATTCGGTTTGGATTA+GGG | 0.230336 | 5_1:+9812091 | None:intergenic |
| AACCTAATTCGGTTTGGATT+AGG | 0.238533 | 5_1:+9812090 | None:intergenic |
| TCCCTAATCCAAACCGAATT+AGG | 0.243177 | 5_1:-9812092 | Msa0716350:five_prime_UTR |
| CCGCTCCTCGCCAATTGATA+TGG | 0.249497 | 5_1:+9809264 | None:intergenic |
| TGAATAGCAATTACTTGAAT+TGG | 0.256640 | 5_1:+9811546 | None:intergenic |
| CAGAATTCGGGTTTGCTTCA+TGG | 0.278734 | 5_1:-9811271 | Msa0716350:CDS |
| TCAGCTGCTGCTCTCGAGTA+TGG | 0.284904 | 5_1:-9808918 | Msa0716350:CDS |
| CTTAATATACACAATGAAAT+TGG | 0.289652 | 5_1:+9808811 | None:intergenic |
| GCCTTCTCTAACACCCTTAC+TGG | 0.296839 | 5_1:+9809948 | None:intergenic |
| AGCAGGTGGTGGTGTGAAAA+AGG | 0.297881 | 5_1:-9811797 | Msa0716350:five_prime_UTR |
| TCGAATTGCTCTTGCGGAAT+TGG | 0.307860 | 5_1:+9809995 | None:intergenic |
| TATTCTGCTTGCTGCTTGGC+TGG | 0.313286 | 5_1:-9811220 | Msa0716350:CDS |
| TGAAGACGAGAAATCGATTA+AGG | 0.317179 | 5_1:+9812021 | None:intergenic |
| TACTGGATTAAAAGAACCTT+TGG | 0.317637 | 5_1:+9809965 | None:intergenic |
| CGGAATTGGCTACAAGTTCC+TGG | 0.321023 | 5_1:+9810009 | None:intergenic |
| GCACTAAATGCTATTAATTT+GGG | 0.330419 | 5_1:-9809363 | Msa0716350:CDS |
| TCGAGAGCAGCAGCTGAAAA+TGG | 0.337984 | 5_1:+9808924 | None:intergenic |
| TTGAACCCGCGTTGTTGAAC+AGG | 0.339753 | 5_1:+9809291 | None:intergenic |
| AGCATTCAGCTTTGAGAGAT+TGG | 0.340008 | 5_1:+9811687 | None:intergenic |
| GGAGTATTAAACCTTGTTAC+TGG | 0.342802 | 5_1:+9811610 | None:intergenic |
| TAGTTGGAGGATTCAGAATT+CGG | 0.347094 | 5_1:-9811284 | Msa0716350:CDS |
| GGATTCATTGTGATAAGAAA+TGG | 0.353829 | 5_1:-9809333 | Msa0716350:CDS |
| GCTATTAATTTGGGTGATAG+TGG | 0.356777 | 5_1:-9809354 | Msa0716350:CDS |
| GTTGTATAATAATGCAAATA+AGG | 0.380102 | 5_1:+9808634 | None:intergenic |
| TCACCTTCCAATGCTATTCT+GGG | 0.384802 | 5_1:-9811487 | Msa0716350:CDS |
| ATCTTATTCTGCTTGCTGCT+TGG | 0.390535 | 5_1:-9811224 | Msa0716350:CDS |
| CCAGGAGATATCATTGTTGC+TGG | 0.394796 | 5_1:-9809095 | Msa0716350:CDS |
| AAGCCCTTGAAGATGTTATC+AGG | 0.397966 | 5_1:-9810173 | Msa0716350:CDS |
| GAGTTTGAGAAGACCGCAAC+AGG | 0.399205 | 5_1:-9811350 | Msa0716350:CDS |
| TGCAGATGGTGTTGGTGGCT+GGG | 0.399726 | 5_1:-9810063 | Msa0716350:CDS |
| CGCTCCTCGCCAATTGATAT+GGG | 0.403739 | 5_1:+9809265 | None:intergenic |
| TTCAAGGGAAGAACTCATAA+AGG | 0.409592 | 5_1:-9811391 | Msa0716350:CDS |
| GTTCAATTTCCCATATCAAT+TGG | 0.409645 | 5_1:-9809274 | Msa0716350:CDS |
| TCAAGGGAAGAACTCATAAA+GGG | 0.414978 | 5_1:-9811390 | Msa0716350:CDS |
| ATGTTAGCCAGTTGTTCATC+AGG | 0.423531 | 5_1:+9811163 | None:intergenic |
| ATGATATCTCCTGGAGCAAC+AGG | 0.431491 | 5_1:+9809104 | None:intergenic |
| CAGCTCTCCTGATGAACAAC+TGG | 0.433048 | 5_1:-9811170 | Msa0716350:CDS |
| GTTGGTGGCTGGGCAGATGT+TGG | 0.436846 | 5_1:-9810053 | Msa0716350:CDS |
| CGATTTCTCGTCTTCACAAT+CGG | 0.438226 | 5_1:-9812014 | Msa0716350:intron |
| AGTTGGAGGATTCAGAATTC+GGG | 0.439453 | 5_1:-9811283 | Msa0716350:CDS |
| GATATTGTTGGAGTGGTTGT+AGG | 0.445908 | 5_1:-9809038 | Msa0716350:CDS |
| GAGTATGGATACCGATTTGA+TGG | 0.447977 | 5_1:-9808903 | Msa0716350:CDS |
| GCATGCTGGTGTGTACTTCA+AGG | 0.449823 | 5_1:-9811407 | Msa0716350:CDS |
| GTTTAAATTTCACGTTACTT+AGG | 0.454614 | 5_1:-9811754 | Msa0716350:five_prime_UTR |
| GTAACGTGAAATTTAAACCT+TGG | 0.459744 | 5_1:+9811759 | None:intergenic |
| AGCGAGCTCTTGACACGAAA+AGG | 0.460925 | 5_1:-9808953 | Msa0716350:CDS |
| TGATCCTGATAACATCTTCA+AGG | 0.466618 | 5_1:+9810169 | None:intergenic |
| AAGGAAGAAAGAGACAAAAC+AGG | 0.467644 | 5_1:+9811589 | None:intergenic |
| ACTGGATTAAAAGAACCTTT+GGG | 0.468734 | 5_1:+9809966 | None:intergenic |
| TGTAAGACACGACAACTGTT+AGG | 0.469269 | 5_1:+9808865 | None:intergenic |
| AGAGCTAGGTAGATCACTTT+CGG | 0.471214 | 5_1:+9809239 | None:intergenic |
| ATCATTGTTGCTGGAACAGA+TGG | 0.479550 | 5_1:-9809086 | Msa0716350:CDS |
| ATATCACTCATTGACTGAGC+TGG | 0.489631 | 5_1:+9808839 | None:intergenic |
| TTTACAGTACCTGTTGCTCC+AGG | 0.495219 | 5_1:-9809113 | Msa0716350:CDS |
| ATGTACAACAACGATATTGT+TGG | 0.496451 | 5_1:-9809050 | Msa0716350:CDS |
| TGCTCAGAAGATAGCAGCAT+TGG | 0.497423 | 5_1:-9808982 | Msa0716350:CDS |
| AACATCTCCCAGAATAGCAT+TGG | 0.499454 | 5_1:+9811480 | None:intergenic |
| CCAGCAACAATGATATCTCC+TGG | 0.503201 | 5_1:+9809095 | None:intergenic |
| CAAGTTTGCCTCCATCAAAT+CGG | 0.504453 | 5_1:+9808892 | None:intergenic |
| TGTGAAGATGAACAAGCAAT+TGG | 0.507426 | 5_1:-9810089 | Msa0716350:CDS |
| CGTTGGTGCAAGAAAATCAA+TGG | 0.508086 | 5_1:-9811515 | Msa0716350:CDS |
| GATTCATTGTGATAAGAAAT+GGG | 0.509981 | 5_1:-9809332 | Msa0716350:CDS |
| CCTCCAACTAGCATCAAAAG+TGG | 0.518120 | 5_1:+9811297 | None:intergenic |
| ATCCAGATAAGGTGGCGACT+GGG | 0.519570 | 5_1:-9810133 | Msa0716350:CDS |
| CATCCAGATAAGGTGGCGAC+TGG | 0.520452 | 5_1:-9810134 | Msa0716350:CDS |
| ATCTTCTGAGCAGTTGCTTG+TGG | 0.525652 | 5_1:+9808993 | None:intergenic |
| CTACCTACCACATCCAGATA+AGG | 0.525784 | 5_1:-9810144 | Msa0716350:CDS |
| CCAAATAAAACTAAAACGCT+AGG | 0.526896 | 5_1:-9812145 | Msa0716350:five_prime_UTR |
| CAGTTGTTCATCAGGAGAGC+TGG | 0.532046 | 5_1:+9811171 | None:intergenic |
| TAGTTCAATTCTGTTAAAGC+AGG | 0.536319 | 5_1:-9811814 | Msa0716350:five_prime_UTR |
| GAAAGTGATCTACCTAGCTC+TGG | 0.538312 | 5_1:-9809237 | Msa0716350:CDS |
| CAAGATTTCACAAAGCATGC+TGG | 0.538735 | 5_1:-9811421 | Msa0716350:CDS |
| GGTGCAACTAGAGCTAGATT+AGG | 0.539864 | 5_1:-9809017 | Msa0716350:CDS |
| ATTGGTGTTGCAGATGGTGT+TGG | 0.543019 | 5_1:-9810071 | Msa0716350:CDS |
| TTCCTCTCGAATTGCTCTTG+CGG | 0.547274 | 5_1:+9809989 | None:intergenic |
| TTCAATTCTGTTAAAGCAGG+TGG | 0.547645 | 5_1:-9811811 | Msa0716350:five_prime_UTR |
| GGTGTTGCAGATGGTGTTGG+TGG | 0.549063 | 5_1:-9810068 | Msa0716350:CDS |
| GTCGAGAAATTCTTTGTCCA+CGG | 0.551550 | 5_1:+9811247 | None:intergenic |
| TCCAGATAAGGTGGCGACTG+GGG | 0.551906 | 5_1:-9810132 | Msa0716350:CDS |
| AACTTTACCTCGCCAGAGCT+AGG | 0.556889 | 5_1:+9809225 | None:intergenic |
| CATGCTGGTGTGTACTTCAA+GGG | 0.557081 | 5_1:-9811406 | Msa0716350:CDS |
| GTCGCCACCTTATCTGGATG+TGG | 0.559731 | 5_1:+9810137 | None:intergenic |
| GGAATTGGCTACAAGTTCCT+GGG | 0.570141 | 5_1:+9810010 | None:intergenic |
| GTGGAACGCCCGAAATTCAA+AGG | 0.571207 | 5_1:+9811316 | None:intergenic |
| CGGGTTTGCTTCATGGACCG+TGG | 0.571395 | 5_1:-9811264 | Msa0716350:CDS |
| AATTCTGTTAAAGCAGGTGG+TGG | 0.574430 | 5_1:-9811808 | Msa0716350:five_prime_UTR |
| TGAACCCGCGTTGTTGAACA+GGG | 0.574747 | 5_1:+9809292 | None:intergenic |
| TCCAGTAAGGGTGTTAGAGA+AGG | 0.582497 | 5_1:-9809949 | Msa0716350:CDS |
| TTAGCTGCCATGCTACACTT+AGG | 0.586952 | 5_1:-9808699 | Msa0716350:three_prime_UTR |
| TATCATTGCTCTTATCGATG+AGG | 0.593917 | 5_1:-9809886 | Msa0716350:intron |
| CCACCTTATCTGGATGTGGT+AGG | 0.594139 | 5_1:+9810141 | None:intergenic |
| AACATAGTGTGCCAGTAACA+AGG | 0.595078 | 5_1:-9811621 | Msa0716350:CDS |
| GCAGATGTTGGTGTTAATGC+AGG | 0.595326 | 5_1:-9810041 | Msa0716350:CDS |
| CCATATCAATTGGCGAGGAG+CGG | 0.596295 | 5_1:-9809264 | Msa0716350:CDS |
| TGCTATTCAAGCAATAACGT+TGG | 0.597168 | 5_1:-9811532 | Msa0716350:CDS |
| CCAGATAAGGTGGCGACTGG+GGG | 0.601048 | 5_1:-9810131 | Msa0716350:CDS |
| CAAGCAATTGGTGTTGCAGA+TGG | 0.607010 | 5_1:-9810077 | Msa0716350:CDS |
| AGTCCCCTGTTCAACAACGC+GGG | 0.619635 | 5_1:-9809296 | Msa0716350:CDS |
| GATCCTGATAACATCTTCAA+GGG | 0.620287 | 5_1:+9810170 | None:intergenic |
| TAATGCAGGACTGTATGCCC+AGG | 0.622814 | 5_1:-9810027 | Msa0716350:CDS |
| GGACCATACAAAACCTGTTG+CGG | 0.623270 | 5_1:+9811337 | None:intergenic |
| AGCAATGATACAAACAGTTG+AGG | 0.624236 | 5_1:+9809899 | None:intergenic |
| ATTTCCCATATCAATTGGCG+AGG | 0.641059 | 5_1:-9809269 | Msa0716350:CDS |
| AAGCATTCCTAAGTGTAGCA+TGG | 0.641129 | 5_1:+9808692 | None:intergenic |
| TCTCCCAGAATAGCATTGGA+AGG | 0.642675 | 5_1:+9811484 | None:intergenic |
| CAACAACGATATTGTTGGAG+TGG | 0.648581 | 5_1:-9809045 | Msa0716350:CDS |
| CCTACCACATCCAGATAAGG+TGG | 0.649572 | 5_1:-9810141 | Msa0716350:CDS |
| TGATCTACCTAGCTCTGGCG+AGG | 0.657103 | 5_1:-9809232 | Msa0716350:intron |
| TATGGATACCGATTTGATGG+AGG | 0.658318 | 5_1:-9808900 | Msa0716350:CDS |
| ACTCATAAAGGGTTTGTGCG+AGG | 0.664894 | 5_1:-9811379 | Msa0716350:CDS |
| TTCGCGAAACAATAGTAACA+AGG | 0.665340 | 5_1:-9811648 | Msa0716350:CDS |
| TTCCGCAAGAGCAATTCGAG+AGG | 0.688045 | 5_1:-9809991 | Msa0716350:CDS |
| GCAATTCGAGAGGAACCCAA+AGG | 0.688593 | 5_1:-9809981 | Msa0716350:CDS |
| GTGTATATTAAGATGCTATG+CGG | 0.703785 | 5_1:-9808800 | Msa0716350:three_prime_UTR |
| AAGTCCCCTGTTCAACAACG+CGG | 0.711155 | 5_1:-9809297 | Msa0716350:CDS |
| GAACCCGCGTTGTTGAACAG+GGG | 0.730041 | 5_1:+9809293 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATATTACAGAAATTTT+AGG | - | chr5_1:9809827-9809846 | Msa0716350:intron | 10.0% |
| !! | TTAAAAAAAAAAAAATGCAA+AGG | + | chr5_1:9811993-9812012 | None:intergenic | 10.0% |
| !!! | TAAATCATGGTTTTAAATTA+TGG | + | chr5_1:9809952-9809971 | None:intergenic | 15.0% |
| !! | GAATTAATTAAATAACAACT+TGG | - | chr5_1:9810023-9810042 | Msa0716350:CDS | 15.0% |
| !!! | AAATATCTATTTTCTTTCTT+TGG | + | chr5_1:9812155-9812174 | None:intergenic | 15.0% |
| !! | TGAAGGAAAAAAAAATCATT+GGG | + | chr5_1:9808865-9808884 | None:intergenic | 20.0% |
| !! | ATGAAGGAAAAAAAAATCAT+TGG | + | chr5_1:9808866-9808885 | None:intergenic | 20.0% |
| !!! | AATTTTAATGTTTCAGAATC+TGG | - | chr5_1:9808917-9808936 | Msa0716350:CDS | 20.0% |
| !!! | ATTTTAATGTTTCAGAATCT+GGG | - | chr5_1:9808918-9808937 | Msa0716350:CDS | 20.0% |
| !! | CTATTTCAAACAACATAAAT+AGG | + | chr5_1:9809707-9809726 | None:intergenic | 20.0% |
| !!! | ATTTATGTTGTTTGAAATAG+AGG | - | chr5_1:9809707-9809726 | Msa0716350:intron | 20.0% |
| !! | TTATTTAATTAATTCGTGAC+AGG | + | chr5_1:9810018-9810037 | None:intergenic | 20.0% |
| !! | AAAGAATGAAAATTAATCAG+TGG | + | chr5_1:9811353-9811372 | None:intergenic | 20.0% |
| !!! | TGATTAATTTTCATTCTTTG+TGG | - | chr5_1:9811354-9811373 | Msa0716350:CDS | 20.0% |
| !! | CTTAATATACACAATGAAAT+TGG | + | chr5_1:9811949-9811968 | None:intergenic | 20.0% |
| !!! | GTATTTTTTTCTCTAGAAAA+AGG | - | chr5_1:9812088-9812107 | Msa0716350:five_prime_UTR | 20.0% |
| !! | GTTGTATAATAATGCAAATA+AGG | + | chr5_1:9812126-9812145 | None:intergenic | 20.0% |
| ! | TTAAGGTTGAAAAATTTGAG+AGG | + | chr5_1:9808722-9808741 | None:intergenic | 25.0% |
| ! | AAGACTGAAATAGAGTTAAT+GGG | + | chr5_1:9808801-9808820 | None:intergenic | 25.0% |
| ! | CAAAATTTGCAACTTTATGA+AGG | + | chr5_1:9808882-9808901 | None:intergenic | 25.0% |
| ! | GTTTAAATTTCACGTTACTT+AGG | - | chr5_1:9809003-9809022 | Msa0716350:CDS | 25.0% |
| ! | TGAATAGCAATTACTTGAAT+TGG | + | chr5_1:9809214-9809233 | None:intergenic | 25.0% |
| ! | TCAAACAACATAAATAGGAT+AGG | + | chr5_1:9809702-9809721 | None:intergenic | 25.0% |
| !! | CATCAGTAATATAAAGGTTT+TGG | + | chr5_1:9809919-9809938 | None:intergenic | 25.0% |
| ! | AAACCTTTATATTACTGATG+CGG | - | chr5_1:9809919-9809938 | Msa0716350:CDS | 25.0% |
| ! | TATTAGAGAAACCATTAGAA+AGG | - | chr5_1:9810376-9810395 | Msa0716350:intron | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | + | chr5_1:9810425-9810444 | None:intergenic | 25.0% |
| ! | ATTGTACAAAATTTCCATGT+TGG | + | chr5_1:9811024-9811043 | None:intergenic | 25.0% |
| !! | AATTTTGTACAATTCATGTC+TGG | - | chr5_1:9811031-9811050 | Msa0716350:intron | 25.0% |
| ! | TATTTAATTGATTGAGTGAC+AGG | + | chr5_1:9811184-9811203 | None:intergenic | 25.0% |
| ! | GTACTTAAAAACTTAAGACT+CGG | + | chr5_1:9811241-9811260 | None:intergenic | 25.0% |
| ! | GCACTAAATGCTATTAATTT+GGG | - | chr5_1:9811394-9811413 | Msa0716350:CDS | 25.0% |
| ! | GATTCATTGTGATAAGAAAT+GGG | - | chr5_1:9811425-9811444 | Msa0716350:CDS | 25.0% |
| ! | AAGTTTATCAATTTATGTGC+AGG | - | chr5_1:9811619-9811638 | Msa0716350:CDS | 25.0% |
| ! | AAAAAAAAAATGCAAAGGAG+AGG | + | chr5_1:9811988-9812007 | None:intergenic | 25.0% |
| !! | ATCTATTTTCTTTCTTTGGA+GGG | + | chr5_1:9812151-9812170 | None:intergenic | 25.0% |
| !! | TATCTATTTTCTTTCTTTGG+AGG | + | chr5_1:9812152-9812171 | None:intergenic | 25.0% |
| !!! | CCTAGCGTTTTAGTTTTATT+TGG | + | chr5_1:9808615-9808634 | None:intergenic | 30.0% |
| CCAAATAAAACTAAAACGCT+AGG | - | chr5_1:9808612-9808631 | Msa0716350:three_prime_UTR | 30.0% | |
| GAAGACTGAAATAGAGTTAA+TGG | + | chr5_1:9808802-9808821 | None:intergenic | 30.0% | |
| TAGTTCAATTCTGTTAAAGC+AGG | - | chr5_1:9808943-9808962 | Msa0716350:CDS | 30.0% | |
| GTAACGTGAAATTTAAACCT+TGG | + | chr5_1:9809001-9809020 | None:intergenic | 30.0% | |
| ! | TTAGGACTATTTTGCATACA+AGG | - | chr5_1:9809021-9809040 | Msa0716350:CDS | 30.0% |
| TAAAAAAGAACTCGAACACA+AGG | + | chr5_1:9809190-9809209 | None:intergenic | 30.0% | |
| TTGTATGGTCCTTTGAATTT+CGG | - | chr5_1:9809432-9809451 | Msa0716350:intron | 30.0% | |
| CATAAATAGGATAGGCTTAT+TGG | + | chr5_1:9809694-9809713 | None:intergenic | 30.0% | |
| AACCTTTATATTACTGATGC+GGG | - | chr5_1:9809920-9809939 | Msa0716350:CDS | 30.0% | |
| ATTAAATAACAACTTGGCAG+CGG | - | chr5_1:9810029-9810048 | Msa0716350:CDS | 30.0% | |
| TTGATCTACTCTTCTTACAA+CGG | + | chr5_1:9810309-9810328 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | - | chr5_1:9810310-9810329 | Msa0716350:intron | 30.0% | |
| ! | GTTTCTCTAATAGTTTTCCT+AGG | + | chr5_1:9810368-9810387 | None:intergenic | 30.0% |
| AACCATTAGAAAGGATTTAG+AGG | - | chr5_1:9810385-9810404 | Msa0716350:intron | 30.0% | |
| TGGTTTATGATAGAACACTA+TGG | - | chr5_1:9810429-9810448 | Msa0716350:intron | 30.0% | |
| AATGCTCAGGATAAGTAAAT+GGG | + | chr5_1:9810530-9810549 | None:intergenic | 30.0% | |
| AATACAAGTATTCAATGCTC+AGG | + | chr5_1:9810543-9810562 | None:intergenic | 30.0% | |
| ACTGGATTAAAAGAACCTTT+GGG | + | chr5_1:9810794-9810813 | None:intergenic | 30.0% | |
| TACTGGATTAAAAGAACCTT+TGG | + | chr5_1:9810795-9810814 | None:intergenic | 30.0% | |
| ! | AAGGTTCTTTTAATCCAGTA+AGG | - | chr5_1:9810795-9810814 | Msa0716350:intron | 30.0% |
| ! | AGGTTCTTTTAATCCAGTAA+GGG | - | chr5_1:9810796-9810815 | Msa0716350:intron | 30.0% |
| ! | TTGTTTTCTTTTCACCAACA+TGG | - | chr5_1:9811007-9811026 | Msa0716350:intron | 30.0% |
| !!! | TTCTCCAAACTTCTTGTTTT+GGG | - | chr5_1:9811095-9811114 | Msa0716350:intron | 30.0% |
| !! | TTTTAAGTACAATGTCCGAT+TGG | - | chr5_1:9811251-9811270 | Msa0716350:CDS | 30.0% |
| GATACAGCTAAAATACCAAT+CGG | + | chr5_1:9811269-9811288 | None:intergenic | 30.0% | |
| ! | CTTTTCACATAGATCAAGAA+AGG | + | chr5_1:9811320-9811339 | None:intergenic | 30.0% |
| ATTCTTTGTGGTTGTTTACT+TGG | - | chr5_1:9811366-9811385 | Msa0716350:CDS | 30.0% | |
| AATTAATAGCATTTAGTGCC+TGG | + | chr5_1:9811393-9811412 | None:intergenic | 30.0% | |
| GGCACTAAATGCTATTAATT+TGG | - | chr5_1:9811393-9811412 | Msa0716350:CDS | 30.0% | |
| GGATTCATTGTGATAAGAAA+TGG | - | chr5_1:9811424-9811443 | Msa0716350:CDS | 30.0% | |
| GTTCAATTTCCCATATCAAT+TGG | - | chr5_1:9811483-9811502 | Msa0716350:CDS | 30.0% | |
| ATGTACAACAACGATATTGT+TGG | - | chr5_1:9811707-9811726 | Msa0716350:exon | 30.0% | |
| GTGTATATTAAGATGCTATG+CGG | - | chr5_1:9811957-9811976 | Msa0716350:intron | 30.0% | |
| ! | TCTCTAGAAAAAGGCTATTA+TGG | - | chr5_1:9812097-9812116 | Msa0716350:five_prime_UTR | 30.0% |
| !! | ACCTAATTCGGTTTGGATTA+GGG | + | chr5_1:9808669-9808688 | None:intergenic | 35.0% |
| !! | AACCTAATTCGGTTTGGATT+AGG | + | chr5_1:9808670-9808689 | None:intergenic | 35.0% |
| CACAAAAACCTAATTCGGTT+TGG | + | chr5_1:9808676-9808695 | None:intergenic | 35.0% | |
| ! | CAAACCGAATTAGGTTTTTG+TGG | - | chr5_1:9808674-9808693 | Msa0716350:three_prime_UTR | 35.0% |
| GCAACCACAAAAACCTAATT+CGG | + | chr5_1:9808681-9808700 | None:intergenic | 35.0% | |
| TGAAGACGAGAAATCGATTA+AGG | + | chr5_1:9808739-9808758 | None:intergenic | 35.0% | |
| TAGAGTTAATGGGAGAAAGA+GGG | + | chr5_1:9808791-9808810 | None:intergenic | 35.0% | |
| ATAGAGTTAATGGGAGAAAG+AGG | + | chr5_1:9808792-9808811 | None:intergenic | 35.0% | |
| TTCAATTCTGTTAAAGCAGG+TGG | - | chr5_1:9808946-9808965 | Msa0716350:CDS | 35.0% | |
| ! | AAGCTGAATGCTTCGATTTT+CGG | - | chr5_1:9809081-9809100 | Msa0716350:CDS | 35.0% |
| TTCGCGAAACAATAGTAACA+AGG | - | chr5_1:9809109-9809128 | Msa0716350:CDS | 35.0% | |
| ! | GGAGTATTAAACCTTGTTAC+TGG | + | chr5_1:9809150-9809169 | None:intergenic | 35.0% |
| AAGGAAGAAAGAGACAAAAC+AGG | + | chr5_1:9809171-9809190 | None:intergenic | 35.0% | |
| TGCTATTCAAGCAATAACGT+TGG | - | chr5_1:9809225-9809244 | Msa0716350:intron | 35.0% | |
| TTCAAGGGAAGAACTCATAA+AGG | - | chr5_1:9809366-9809385 | Msa0716350:CDS | 35.0% | |
| TCAAGGGAAGAACTCATAAA+GGG | - | chr5_1:9809367-9809386 | Msa0716350:intron | 35.0% | |
| TGTATGGTCCTTTGAATTTC+GGG | - | chr5_1:9809433-9809452 | Msa0716350:intron | 35.0% | |
| TAGTTGGAGGATTCAGAATT+CGG | - | chr5_1:9809473-9809492 | Msa0716350:intron | 35.0% | |
| TAGGATAGGCTTATTGGTAT+TGG | + | chr5_1:9809688-9809707 | None:intergenic | 35.0% | |
| AATGCAGTATGTAGTTGTAG+TGG | - | chr5_1:9809787-9809806 | Msa0716350:intron | 35.0% | |
| AACCCGCATCAGTAATATAA+AGG | + | chr5_1:9809925-9809944 | None:intergenic | 35.0% | |
| GGTGAGGAGAATATAAATCA+TGG | + | chr5_1:9809965-9809984 | None:intergenic | 35.0% | |
| ATCTCACTGGAAATCAGTAA+TGG | + | chr5_1:9809986-9810005 | None:intergenic | 35.0% | |
| TTAATTCGTGACAGGAAACT+TGG | + | chr5_1:9810010-9810029 | None:intergenic | 35.0% | |
| TTATACTACTCCGTGTTGTA+TGG | - | chr5_1:9810074-9810093 | Msa0716350:CDS | 35.0% | |
| TCTACCAACTTCTCTACTAT+AGG | + | chr5_1:9810239-9810258 | None:intergenic | 35.0% | |
| !! | TAGAGAAGTTGGTAGAAAAC+AGG | - | chr5_1:9810243-9810262 | Msa0716350:intron | 35.0% |
| AAGAAGAGTAGATCAAATGG+AGG | - | chr5_1:9810313-9810332 | Msa0716350:intron | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | + | chr5_1:9810390-9810409 | None:intergenic | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr5_1:9810409-9810428 | Msa0716350:intron | 35.0% |
| CAATGCTCAGGATAAGTAAA+TGG | + | chr5_1:9810531-9810550 | None:intergenic | 35.0% | |
| GATCCTGATAACATCTTCAA+GGG | + | chr5_1:9810590-9810609 | None:intergenic | 35.0% | |
| TGATCCTGATAACATCTTCA+AGG | + | chr5_1:9810591-9810610 | None:intergenic | 35.0% | |
| TGTGAAGATGAACAAGCAAT+TGG | - | chr5_1:9810668-9810687 | Msa0716350:intron | 35.0% | |
| AGCAATGATACAAACAGTTG+AGG | + | chr5_1:9810861-9810880 | None:intergenic | 35.0% | |
| TATCATTGCTCTTATCGATG+AGG | - | chr5_1:9810871-9810890 | Msa0716350:intron | 35.0% | |
| !!! | AAGTCAGTTTTGTTGATTGC+AGG | - | chr5_1:9810929-9810948 | Msa0716350:intron | 35.0% |
| !! | GTTTTGTTGATTGCAGGTTA+AGG | - | chr5_1:9810935-9810954 | Msa0716350:intron | 35.0% |
| AGAATGCATATCAAGACTCA+TGG | + | chr5_1:9811076-9811095 | None:intergenic | 35.0% | |
| !! | CTTCTCCAAACTTCTTGTTT+TGG | - | chr5_1:9811094-9811113 | Msa0716350:intron | 35.0% |
| !!! | TCTCCAAACTTCTTGTTTTG+GGG | - | chr5_1:9811096-9811115 | Msa0716350:intron | 35.0% |
| TATCCCCAAAACAAGAAGTT+TGG | + | chr5_1:9811102-9811121 | None:intergenic | 35.0% | |
| TTCTCTACAGTCTACAAAAC+TGG | - | chr5_1:9811125-9811144 | Msa0716350:intron | 35.0% | |
| ACAAACTAGACACTTGTTTG+TGG | + | chr5_1:9811157-9811176 | None:intergenic | 35.0% | |
| ! | GCTATTAATTTGGGTGATAG+TGG | - | chr5_1:9811403-9811422 | Msa0716350:CDS | 35.0% |
| TAAAACCACAATCCTAGCAA+TGG | - | chr5_1:9811562-9811581 | Msa0716350:CDS | 35.0% | |
| AAACTTCAATCTCCATTGCT+AGG | + | chr5_1:9811577-9811596 | None:intergenic | 35.0% | |
| TCCCTAATCCAAACCGAATT+AGG | - | chr5_1:9808665-9808684 | Msa0716350:three_prime_UTR | 40.0% | |
| CGATTTCTCGTCTTCACAAT+CGG | - | chr5_1:9808743-9808762 | Msa0716350:three_prime_UTR | 40.0% | |
| AATTCTGTTAAAGCAGGTGG+TGG | - | chr5_1:9808949-9808968 | Msa0716350:CDS | 40.0% | |
| !!! | GGAATGCACTTTTTCATCCA+AGG | - | chr5_1:9808981-9809000 | Msa0716350:CDS | 40.0% |
| !! | AGCATTCAGCTTTGAGAGAT+TGG | + | chr5_1:9809073-9809092 | None:intergenic | 40.0% |
| AACATAGTGTGCCAGTAACA+AGG | - | chr5_1:9809136-9809155 | Msa0716350:intron | 40.0% | |
| CGTTGGTGCAAGAAAATCAA+TGG | - | chr5_1:9809242-9809261 | Msa0716350:CDS | 40.0% | |
| TTCACCTTCCAATGCTATTC+TGG | - | chr5_1:9809269-9809288 | Msa0716350:CDS | 40.0% | |
| TCACCTTCCAATGCTATTCT+GGG | - | chr5_1:9809270-9809289 | Msa0716350:CDS | 40.0% | |
| AACATCTCCCAGAATAGCAT+TGG | + | chr5_1:9809280-9809299 | None:intergenic | 40.0% | |
| CAAGATTTCACAAAGCATGC+TGG | - | chr5_1:9809336-9809355 | Msa0716350:CDS | 40.0% | |
| !! | GTTCCACTTTTGATGCTAGT+TGG | - | chr5_1:9809457-9809476 | Msa0716350:intron | 40.0% |
| AGTTGGAGGATTCAGAATTC+GGG | - | chr5_1:9809474-9809493 | Msa0716350:intron | 40.0% | |
| GTCGAGAAATTCTTTGTCCA+CGG | + | chr5_1:9809513-9809532 | None:intergenic | 40.0% | |
| ! | ATCTTATTCTGCTTGCTGCT+TGG | - | chr5_1:9809533-9809552 | Msa0716350:intron | 40.0% |
| ATGTTAGCCAGTTGTTCATC+AGG | + | chr5_1:9809597-9809616 | None:intergenic | 40.0% | |
| ACTGGAAATCAGTAATGGTG+AGG | + | chr5_1:9809981-9810000 | None:intergenic | 40.0% | |
| AGACTAGACAGGATAGGATT+AGG | - | chr5_1:9810180-9810199 | Msa0716350:CDS | 40.0% | |
| TGACACAATTAGAGAGAGAG+TGG | - | chr5_1:9810205-9810224 | Msa0716350:intron | 40.0% | |
| GACACAATTAGAGAGAGAGT+GGG | - | chr5_1:9810206-9810225 | Msa0716350:intron | 40.0% | |
| ACACAATTAGAGAGAGAGTG+GGG | - | chr5_1:9810207-9810226 | Msa0716350:intron | 40.0% | |
| AGCACCTATAGTAGAGAAGT+TGG | - | chr5_1:9810232-9810251 | Msa0716350:intron | 40.0% | |
| TGGTAGAAAACAGGCTTAGA+TGG | - | chr5_1:9810252-9810271 | Msa0716350:intron | 40.0% | |
| GAAAACAGGCTTAGATGGTT+TGG | - | chr5_1:9810257-9810276 | Msa0716350:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | + | chr5_1:9810300-9810319 | None:intergenic | 40.0% | |
| AAAGAGGTAGAGAAAGACCT+AGG | - | chr5_1:9810348-9810367 | Msa0716350:intron | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | - | chr5_1:9810397-9810416 | Msa0716350:intron | 40.0% | |
| AAGCCCTTGAAGATGTTATC+AGG | - | chr5_1:9810584-9810603 | Msa0716350:intron | 40.0% | |
| GAAGGCTCACTCAAAAACAA+AGG | - | chr5_1:9810826-9810845 | Msa0716350:intron | 40.0% | |
| ! | TCACTCAAAAACAAAGGCGT+TGG | - | chr5_1:9810832-9810851 | Msa0716350:intron | 40.0% |
| !! | CACTCAAAAACAAAGGCGTT+GGG | - | chr5_1:9810833-9810852 | Msa0716350:intron | 40.0% |
| TAGACACTTGTTTGTGGTAC+AGG | + | chr5_1:9811151-9811170 | None:intergenic | 40.0% | |
| ATTTCCCATATCAATTGGCG+AGG | - | chr5_1:9811488-9811507 | Msa0716350:CDS | 40.0% | |
| AGAGCTAGGTAGATCACTTT+CGG | + | chr5_1:9811521-9811540 | None:intergenic | 40.0% | |
| AATCTCCATTGCTAGGATTG+TGG | + | chr5_1:9811570-9811589 | None:intergenic | 40.0% | |
| ATCATTGTTGCTGGAACAGA+TGG | - | chr5_1:9811671-9811690 | Msa0716350:CDS | 40.0% | |
| CAACAACGATATTGTTGGAG+TGG | - | chr5_1:9811712-9811731 | Msa0716350:exon | 40.0% | |
| GATATTGTTGGAGTGGTTGT+AGG | - | chr5_1:9811719-9811738 | Msa0716350:exon | 40.0% | |
| !! | GAGTATGGATACCGATTTGA+TGG | - | chr5_1:9811854-9811873 | Msa0716350:intron | 40.0% |
| !! | TATGGATACCGATTTGATGG+AGG | - | chr5_1:9811857-9811876 | Msa0716350:intron | 40.0% |
| CAAGTTTGCCTCCATCAAAT+CGG | + | chr5_1:9811868-9811887 | None:intergenic | 40.0% | |
| TGTAAGACACGACAACTGTT+AGG | + | chr5_1:9811895-9811914 | None:intergenic | 40.0% | |
| ! | ATATCACTCATTGACTGAGC+TGG | + | chr5_1:9811921-9811940 | None:intergenic | 40.0% |
| AAGCATTCCTAAGTGTAGCA+TGG | + | chr5_1:9812068-9812087 | None:intergenic | 40.0% | |
| ! | TCTCCCAGAATAGCATTGGA+AGG | + | chr5_1:9809276-9809295 | None:intergenic | 45.0% |
| CATGCTGGTGTGTACTTCAA+GGG | - | chr5_1:9809351-9809370 | Msa0716350:CDS | 45.0% | |
| ACTCATAAAGGGTTTGTGCG+AGG | - | chr5_1:9809378-9809397 | Msa0716350:intron | 45.0% | |
| !! | AGACCGCAACAGGTTTTGTA+TGG | - | chr5_1:9809417-9809436 | Msa0716350:intron | 45.0% |
| GGACCATACAAAACCTGTTG+CGG | + | chr5_1:9809423-9809442 | None:intergenic | 45.0% | |
| CCTCCAACTAGCATCAAAAG+TGG | + | chr5_1:9809463-9809482 | None:intergenic | 45.0% | |
| !! | CCACTTTTGATGCTAGTTGG+AGG | - | chr5_1:9809460-9809479 | Msa0716350:intron | 45.0% |
| ! | CAGAATTCGGGTTTGCTTCA+TGG | - | chr5_1:9809486-9809505 | Msa0716350:intron | 45.0% |
| GCAGTATGTAGTTGTAGTGG+TGG | - | chr5_1:9809790-9809809 | Msa0716350:intron | 45.0% | |
| CAGGAAACTTGGTATCTCAC+TGG | + | chr5_1:9809999-9810018 | None:intergenic | 45.0% | |
| CTACTCCGTGTTGTATGGTA+CGG | - | chr5_1:9810079-9810098 | Msa0716350:CDS | 45.0% | |
| ACACTCCGTACCATACAACA+CGG | + | chr5_1:9810087-9810106 | None:intergenic | 45.0% | |
| TGTTGTATGGTACGGAGTGT+TGG | - | chr5_1:9810087-9810106 | Msa0716350:CDS | 45.0% | |
| ! | GTTGTATGGTACGGAGTGTT+GGG | - | chr5_1:9810088-9810107 | Msa0716350:CDS | 45.0% |
| CACTTACTTGACTCCTGTGT+TGG | + | chr5_1:9810124-9810143 | None:intergenic | 45.0% | |
| CAGGAGTCAAGTAAGTGTAG+CGG | - | chr5_1:9810127-9810146 | Msa0716350:CDS | 45.0% | |
| ! | AAGTAAGTGTAGCGGAGATG+AGG | - | chr5_1:9810135-9810154 | Msa0716350:CDS | 45.0% |
| AGGATGTTGTGTTGGATGAG+TGG | - | chr5_1:9810155-9810174 | Msa0716350:CDS | 45.0% | |
| GATGAGTGGTAAGACTAGAC+AGG | - | chr5_1:9810169-9810188 | Msa0716350:CDS | 45.0% | |
| GTGGTAAGACTAGACAGGAT+AGG | - | chr5_1:9810174-9810193 | Msa0716350:CDS | 45.0% | |
| CACAATTAGAGAGAGAGTGG+GGG | - | chr5_1:9810208-9810227 | Msa0716350:intron | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | + | chr5_1:9810299-9810318 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | - | chr5_1:9810322-9810341 | Msa0716350:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | - | chr5_1:9810332-9810351 | Msa0716350:intron | 45.0% | |
| CTACCTACCACATCCAGATA+AGG | - | chr5_1:9810613-9810632 | Msa0716350:intron | 45.0% | |
| !! | CAAGCAATTGGTGTTGCAGA+TGG | - | chr5_1:9810680-9810699 | Msa0716350:intron | 45.0% |
| !! | ATTGGTGTTGCAGATGGTGT+TGG | - | chr5_1:9810686-9810705 | Msa0716350:intron | 45.0% |
| !! | GCAGATGTTGGTGTTAATGC+AGG | - | chr5_1:9810716-9810735 | Msa0716350:intron | 45.0% |
| GGAATTGGCTACAAGTTCCT+GGG | + | chr5_1:9810750-9810769 | None:intergenic | 45.0% | |
| TCGAATTGCTCTTGCGGAAT+TGG | + | chr5_1:9810765-9810784 | None:intergenic | 45.0% | |
| TTCCTCTCGAATTGCTCTTG+CGG | + | chr5_1:9810771-9810790 | None:intergenic | 45.0% | |
| !! | TCCAGTAAGGGTGTTAGAGA+AGG | - | chr5_1:9810808-9810827 | Msa0716350:intron | 45.0% |
| GCTTCATGCATACTGAACAC+TGG | - | chr5_1:9810979-9810998 | Msa0716350:intron | 45.0% | |
| GCTGTATCTCGATTCACTGA+AGG | - | chr5_1:9811281-9811300 | Msa0716350:CDS | 45.0% | |
| TGTGGTTGTTTACTTGGTCC+AGG | - | chr5_1:9811372-9811391 | Msa0716350:CDS | 45.0% | |
| GAAAGTGATCTACCTAGCTC+TGG | - | chr5_1:9811520-9811539 | Msa0716350:CDS | 45.0% | |
| TTTACAGTACCTGTTGCTCC+AGG | - | chr5_1:9811644-9811663 | Msa0716350:CDS | 45.0% | |
| ATGATATCTCCTGGAGCAAC+AGG | + | chr5_1:9811656-9811675 | None:intergenic | 45.0% | |
| CCAGCAACAATGATATCTCC+TGG | + | chr5_1:9811665-9811684 | None:intergenic | 45.0% | |
| CCAGGAGATATCATTGTTGC+TGG | - | chr5_1:9811662-9811681 | Msa0716350:CDS | 45.0% | |
| GGTGCAACTAGAGCTAGATT+AGG | - | chr5_1:9811740-9811759 | Msa0716350:five_prime_UTR | 45.0% | |
| ATCTTCTGAGCAGTTGCTTG+TGG | + | chr5_1:9811767-9811786 | None:intergenic | 45.0% | |
| TGCTCAGAAGATAGCAGCAT+TGG | - | chr5_1:9811775-9811794 | Msa0716350:five_prime_UTR | 45.0% | |
| TTAGCTGCCATGCTACACTT+AGG | - | chr5_1:9812058-9812077 | Msa0716350:five_prime_UTR | 45.0% | |
| ATGGGAGAAAGAGGGAAGAG+AGG | + | chr5_1:9808783-9808802 | None:intergenic | 50.0% | |
| ! | AGCAGGTGGTGGTGTGAAAA+AGG | - | chr5_1:9808960-9808979 | Msa0716350:CDS | 50.0% |
| GCATGCTGGTGTGTACTTCA+AGG | - | chr5_1:9809350-9809369 | Msa0716350:CDS | 50.0% | |
| GAGTTTGAGAAGACCGCAAC+AGG | - | chr5_1:9809407-9809426 | Msa0716350:intron | 50.0% | |
| GTGGAACGCCCGAAATTCAA+AGG | + | chr5_1:9809444-9809463 | None:intergenic | 50.0% | |
| ! | TATTCTGCTTGCTGCTTGGC+TGG | - | chr5_1:9809537-9809556 | Msa0716350:intron | 50.0% |
| CAGTTGTTCATCAGGAGAGC+TGG | + | chr5_1:9809589-9809608 | None:intergenic | 50.0% | |
| CAGCTCTCCTGATGAACAAC+TGG | - | chr5_1:9809587-9809606 | Msa0716350:intron | 50.0% | |
| GCACTATGCAGCTACAGTTG+CGG | - | chr5_1:9809872-9809891 | Msa0716350:intron | 50.0% | |
| CGGAGATGAGGATGTTGTGT+TGG | - | chr5_1:9810147-9810166 | Msa0716350:CDS | 50.0% | |
| ACTAAGTGGGATCGGCTACA+TGG | + | chr5_1:9810466-9810485 | None:intergenic | 50.0% | |
| ATGTAGCCGATCCCACTTAG+TGG | - | chr5_1:9810465-9810484 | Msa0716350:intron | 50.0% | |
| TGTAGCCGATCCCACTTAGT+GGG | - | chr5_1:9810466-9810485 | Msa0716350:intron | 50.0% | |
| CTTACCCCACTAAGTGGGAT+CGG | + | chr5_1:9810474-9810493 | None:intergenic | 50.0% | |
| CAAGCCTTACCCCACTAAGT+GGG | + | chr5_1:9810479-9810498 | None:intergenic | 50.0% | |
| CCACCTTATCTGGATGTGGT+AGG | + | chr5_1:9810619-9810638 | None:intergenic | 50.0% | |
| CCTACCACATCCAGATAAGG+TGG | - | chr5_1:9810616-9810635 | Msa0716350:intron | 50.0% | |
| ATCCAGATAAGGTGGCGACT+GGG | - | chr5_1:9810624-9810643 | Msa0716350:intron | 50.0% | |
| TAATGCAGGACTGTATGCCC+AGG | - | chr5_1:9810730-9810749 | Msa0716350:intron | 50.0% | |
| CGGAATTGGCTACAAGTTCC+TGG | + | chr5_1:9810751-9810770 | None:intergenic | 50.0% | |
| TTCCGCAAGAGCAATTCGAG+AGG | - | chr5_1:9810766-9810785 | Msa0716350:intron | 50.0% | |
| GCAATTCGAGAGGAACCCAA+AGG | - | chr5_1:9810776-9810795 | Msa0716350:intron | 50.0% | |
| GCCTTCTCTAACACCCTTAC+TGG | + | chr5_1:9810812-9810831 | None:intergenic | 50.0% | |
| AAGTCCCCTGTTCAACAACG+CGG | - | chr5_1:9811460-9811479 | Msa0716350:CDS | 50.0% | |
| TGAACCCGCGTTGTTGAACA+GGG | + | chr5_1:9811468-9811487 | None:intergenic | 50.0% | |
| TTGAACCCGCGTTGTTGAAC+AGG | + | chr5_1:9811469-9811488 | None:intergenic | 50.0% | |
| CGCTCCTCGCCAATTGATAT+GGG | + | chr5_1:9811495-9811514 | None:intergenic | 50.0% | |
| CCATATCAATTGGCGAGGAG+CGG | - | chr5_1:9811493-9811512 | Msa0716350:CDS | 50.0% | |
| AACTTTACCTCGCCAGAGCT+AGG | + | chr5_1:9811535-9811554 | None:intergenic | 50.0% | |
| AGCGAGCTCTTGACACGAAA+AGG | - | chr5_1:9811804-9811823 | Msa0716350:five_prime_UTR | 50.0% | |
| TCGAGAGCAGCAGCTGAAAA+TGG | + | chr5_1:9811836-9811855 | None:intergenic | 50.0% | |
| GGGCAGTTAAGAGCCAACAC+AGG | - | chr5_1:9810108-9810127 | Msa0716350:CDS | 55.0% | |
| GTAGCCGATCCCACTTAGTG+GGG | - | chr5_1:9810467-9810486 | Msa0716350:intron | 55.0% | |
| CGATCCCACTTAGTGGGGTA+AGG | - | chr5_1:9810472-9810491 | Msa0716350:intron | 55.0% | |
| CCAAGCCTTACCCCACTAAG+TGG | + | chr5_1:9810480-9810499 | None:intergenic | 55.0% | |
| CCACTTAGTGGGGTAAGGCT+TGG | - | chr5_1:9810477-9810496 | Msa0716350:intron | 55.0% | |
| GTCGCCACCTTATCTGGATG+TGG | + | chr5_1:9810623-9810642 | None:intergenic | 55.0% | |
| CATCCAGATAAGGTGGCGAC+TGG | - | chr5_1:9810623-9810642 | Msa0716350:intron | 55.0% | |
| TCCAGATAAGGTGGCGACTG+GGG | - | chr5_1:9810625-9810644 | Msa0716350:intron | 55.0% | |
| ! | GGTGTTGCAGATGGTGTTGG+TGG | - | chr5_1:9810689-9810708 | Msa0716350:intron | 55.0% |
| !! | TTGCAGATGGTGTTGGTGGC+TGG | - | chr5_1:9810693-9810712 | Msa0716350:intron | 55.0% |
| !! | TGCAGATGGTGTTGGTGGCT+GGG | - | chr5_1:9810694-9810713 | Msa0716350:intron | 55.0% |
| AGTCCCCTGTTCAACAACGC+GGG | - | chr5_1:9811461-9811480 | Msa0716350:CDS | 55.0% | |
| GAACCCGCGTTGTTGAACAG+GGG | + | chr5_1:9811467-9811486 | None:intergenic | 55.0% | |
| CCGCTCCTCGCCAATTGATA+TGG | + | chr5_1:9811496-9811515 | None:intergenic | 55.0% | |
| !! | TGATCTACCTAGCTCTGGCG+AGG | - | chr5_1:9811525-9811544 | Msa0716350:CDS | 55.0% |
| TCAGCTGCTGCTCTCGAGTA+TGG | - | chr5_1:9811839-9811858 | Msa0716350:intron | 55.0% | |
| ! | CGGGTTTGCTTCATGGACCG+TGG | - | chr5_1:9809493-9809512 | Msa0716350:intron | 60.0% |
| CTACAGTTGCGGCCGTGATG+TGG | - | chr5_1:9809883-9809902 | Msa0716350:intron | 60.0% | |
| GGAGCCCTGCAACCACATCA+CGG | + | chr5_1:9809898-9809917 | None:intergenic | 60.0% | |
| CCAGATAAGGTGGCGACTGG+GGG | - | chr5_1:9810626-9810645 | Msa0716350:intron | 60.0% | |
| !! | GTTGGTGGCTGGGCAGATGT+TGG | - | chr5_1:9810704-9810723 | Msa0716350:intron | 60.0% |
| TGCGGCCGTGATGTGGTTGC+AGG | - | chr5_1:9809890-9809909 | Msa0716350:CDS | 65.0% | |
| GCGGCCGTGATGTGGTTGCA+GGG | - | chr5_1:9809891-9809910 | Msa0716350:CDS | 65.0% | |
| CCCCCAGTCGCCACCTTATC+TGG | + | chr5_1:9810629-9810648 | None:intergenic | 65.0% | |
| TAAGGTGGCGACTGGGGGAG+AGG | - | chr5_1:9810631-9810650 | Msa0716350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 9808599 | 9812180 | 9808599 | ID=Msa0716350;Name=Msa0716350 |
| chr5_1 | mRNA | 9808599 | 9812180 | 9808599 | ID=Msa0716350-mRNA-1;Parent=Msa0716350;Name=Msa0716350-mRNA-1;_AED=0.02;_eAED=0.02;_QI=290|1|1|1|0.75|0.6|5|243|444 |
| chr5_1 | exon | 9808599 | 9809138 | 9808599 | ID=Msa0716350-mRNA-1:exon:3948;Parent=Msa0716350-mRNA-1 |
| chr5_1 | exon | 9809233 | 9809385 | 9809233 | ID=Msa0716350-mRNA-1:exon:3947;Parent=Msa0716350-mRNA-1 |
| chr5_1 | exon | 9809887 | 9810211 | 9809887 | ID=Msa0716350-mRNA-1:exon:3946;Parent=Msa0716350-mRNA-1 |
| chr5_1 | exon | 9811163 | 9811846 | 9811163 | ID=Msa0716350-mRNA-1:exon:3945;Parent=Msa0716350-mRNA-1 |
| chr5_1 | exon | 9812015 | 9812180 | 9812015 | ID=Msa0716350-mRNA-1:exon:3944;Parent=Msa0716350-mRNA-1 |
| chr5_1 | five_prime_UTR | 9812015 | 9812180 | 9812015 | ID=Msa0716350-mRNA-1:five_prime_utr;Parent=Msa0716350-mRNA-1 |
| chr5_1 | five_prime_UTR | 9811723 | 9811846 | 9811723 | ID=Msa0716350-mRNA-1:five_prime_utr;Parent=Msa0716350-mRNA-1 |
| chr5_1 | CDS | 9811163 | 9811722 | 9811163 | ID=Msa0716350-mRNA-1:cds;Parent=Msa0716350-mRNA-1 |
| chr5_1 | CDS | 9809887 | 9810211 | 9809887 | ID=Msa0716350-mRNA-1:cds;Parent=Msa0716350-mRNA-1 |
| chr5_1 | CDS | 9809233 | 9809385 | 9809233 | ID=Msa0716350-mRNA-1:cds;Parent=Msa0716350-mRNA-1 |
| chr5_1 | CDS | 9808842 | 9809138 | 9808842 | ID=Msa0716350-mRNA-1:cds;Parent=Msa0716350-mRNA-1 |
| chr5_1 | three_prime_UTR | 9808599 | 9808841 | 9808599 | ID=Msa0716350-mRNA-1:three_prime_utr;Parent=Msa0716350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
