AlfalfaGEDB | Msa0716350

M. sativa cultivar zhongmu-4 / Msa0716350

KEGG: K17508
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
PFAM: PF07228.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716350	XP_003611962.2	94.889	450	17	1	1	444	1	450	0.0	825

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716350	sp\|Q9LVQ8\|P2C80_ARATH	53.483	402	168	7	47	441	25	414	2.31e-131	388

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716350	G7KC88	94.889	450	17	1	1	444	1	450	0.0	825

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0030000	Msa0716350	0.816293	5.957451e-52	-8.615850e-47
Msa0043680	Msa0716350	0.824594	7.418757e-54	-8.615850e-47
Msa0076550	Msa0716350	0.800135	1.661487e-48	-8.615850e-47
Msa0092660	Msa0716350	0.806194	9.260295e-50	-8.615850e-47
Msa0092680	Msa0716350	0.814079	1.848822e-51	-8.615850e-47
Msa0112340	Msa0716350	0.800792	1.220527e-48	-8.615850e-47
Msa0125230	Msa0716350	0.806573	7.702812e-50	-8.615850e-47
Msa0139740	Msa0716350	0.810024	1.415802e-50	-8.615850e-47
Msa0185550	Msa0716350	0.802015	6.855542e-49	-8.615850e-47
Msa0209780	Msa0716350	0.843644	1.234013e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716350	MtrunA17_Chr5g0403781	94.889	450	17	1	1	444	1	450	0.0	825
Msa0716350	MtrunA17_Chr1g0154711	64.952	311	92	5	139	441	204	505	1.62e-132	391
Msa0716350	MtrunA17_Chr2g0278991	35.827	254	157	4	190	441	1041	1290	3.91e-40	154
Msa0716350	MtrunA17_Chr3g0106291	37.891	256	137	7	200	441	62	309	1.01e-39	144

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0716350	AT5G66720.1	53.483	402	168	7	47	441	25	414	2.35e-132	388
Msa0716350	AT5G66720.2	53.483	402	165	7	47	441	25	411	7.04e-132	387
Msa0716350	AT4G16580.1	63.051	295	103	2	155	444	171	464	5.64e-129	381
Msa0716350	AT4G33500.1	38.129	278	153	4	176	438	446	719	2.34e-49	179
Msa0716350	AT2G30170.1	35.849	265	147	8	192	441	42	298	4.70e-45	159
Msa0716350	AT2G30170.6	38.974	195	111	6	192	382	7	197	9.26e-38	137
Msa0716350	AT2G30170.3	34.934	229	127	7	227	441	1	221	2.25e-37	136
Msa0716350	AT2G30170.5	38.974	195	111	6	192	382	42	232	3.08e-37	137
Msa0716350	AT2G30170.7	38.365	159	91	5	227	382	1	155	6.21e-30	115
Msa0716350	AT2G30170.4	38.255	149	87	4	192	337	42	188	5.15e-27	108

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Find 121 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATAGTGTGCCAGTAACA+AGG	0.595078	5_1:-9811621	Msa0716350:CDS
AACATCTCCCAGAATAGCAT+TGG	0.499454	5_1:+9811480	None:intergenic
AACCTAATTCGGTTTGGATT+AGG	0.238533	5_1:+9812090	None:intergenic
AACTTTACCTCGCCAGAGCT+AGG	0.556889	5_1:+9809225	None:intergenic
AAGCATTCCTAAGTGTAGCA+TGG	0.641129	5_1:+9808692	None:intergenic
AAGCCCTTGAAGATGTTATC+AGG	0.397966	5_1:-9810173	Msa0716350:CDS
AAGGAAGAAAGAGACAAAAC+AGG	0.467644	5_1:+9811589	None:intergenic
AAGTCCCCTGTTCAACAACG+CGG	0.711155	5_1:-9809297	Msa0716350:CDS
AATTCTGTTAAAGCAGGTGG+TGG	0.574430	5_1:-9811808	Msa0716350:five_prime_UTR
ACCTAATTCGGTTTGGATTA+GGG	0.230336	5_1:+9812091	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCAAATAAAACTAAAACGCT+AGG	-	chr5_1:9808612-9808631	Msa0716350:three_prime_UTR	30.0%
GAAGACTGAAATAGAGTTAA+TGG	+	chr5_1:9808802-9808821	None:intergenic	30.0%
TAGTTCAATTCTGTTAAAGC+AGG	-	chr5_1:9808943-9808962	Msa0716350:CDS	30.0%
GTAACGTGAAATTTAAACCT+TGG	+	chr5_1:9809001-9809020	None:intergenic	30.0%
TAAAAAAGAACTCGAACACA+AGG	+	chr5_1:9809190-9809209	None:intergenic	30.0%
TTGTATGGTCCTTTGAATTT+CGG	-	chr5_1:9809432-9809451	Msa0716350:intron	30.0%
CATAAATAGGATAGGCTTAT+TGG	+	chr5_1:9809694-9809713	None:intergenic	30.0%
AACCTTTATATTACTGATGC+GGG	-	chr5_1:9809920-9809939	Msa0716350:CDS	30.0%
ATTAAATAACAACTTGGCAG+CGG	-	chr5_1:9810029-9810048	Msa0716350:CDS	30.0%
TTGATCTACTCTTCTTACAA+CGG	+	chr5_1:9810309-9810328	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	9808599	9812180	9808599	ID=Msa0716350;Name=Msa0716350
chr5_1	mRNA	9808599	9812180	9808599	ID=Msa0716350-mRNA-1;Parent=Msa0716350;Name=Msa0716350-mRNA-1;_AED=0.02;_eAED=0.02;_QI=290\|1\|1\|1\|0.75\|0.6\|5\|243\|444
chr5_1	exon	9808599	9809138	9808599	ID=Msa0716350-mRNA-1:exon:3948;Parent=Msa0716350-mRNA-1
chr5_1	exon	9809233	9809385	9809233	ID=Msa0716350-mRNA-1:exon:3947;Parent=Msa0716350-mRNA-1
chr5_1	exon	9809887	9810211	9809887	ID=Msa0716350-mRNA-1:exon:3946;Parent=Msa0716350-mRNA-1
chr5_1	exon	9811163	9811846	9811163	ID=Msa0716350-mRNA-1:exon:3945;Parent=Msa0716350-mRNA-1
chr5_1	exon	9812015	9812180	9812015	ID=Msa0716350-mRNA-1:exon:3944;Parent=Msa0716350-mRNA-1
chr5_1	five_prime_UTR	9812015	9812180	9812015	ID=Msa0716350-mRNA-1:five_prime_utr;Parent=Msa0716350-mRNA-1
chr5_1	five_prime_UTR	9811723	9811846	9811723	ID=Msa0716350-mRNA-1:five_prime_utr;Parent=Msa0716350-mRNA-1
chr5_1	CDS	9811163	9811722	9811163	ID=Msa0716350-mRNA-1:cds;Parent=Msa0716350-mRNA-1
chr5_1	CDS	9809887	9810211	9809887	ID=Msa0716350-mRNA-1:cds;Parent=Msa0716350-mRNA-1
chr5_1	CDS	9809233	9809385	9809233	ID=Msa0716350-mRNA-1:cds;Parent=Msa0716350-mRNA-1
chr5_1	CDS	9808842	9809138	9808842	ID=Msa0716350-mRNA-1:cds;Parent=Msa0716350-mRNA-1
chr5_1	three_prime_UTR	9808599	9808841	9808599	ID=Msa0716350-mRNA-1:three_prime_utr;Parent=Msa0716350-mRNA-1

Gene Sequence

>Msa0716350

ATGCTATGTGTTACCAATCTCTCAAAGCTGAATGCTTCGATTTTCGGTTGCATTCGCGAAACAATAGTAACAAGGAAACAACATAGTGTGCCAGTAACAAGGTTTAATACTCCTGTTTTGTCTCTTTCTTCCTTGTGTTCGAGTTCTTTTTTATCCAATTCAAGTAATTGCTATTCAAGCAATAACGTTGGTGCAAGAAAATCAATGGCTTCTTCACCTTCCAATGCTATTCTGGGAGATGTTTATGTCGATGATCTGATCTCGAGTTATAGCAGTGTTCAAGATTTCACAAAGCATGCTGGTGTGTACTTCAAGGGAAGAACTCATAAAGGGTTTGTGCGAGGTAGTTTGAGTTTGAGAAGACCGCAACAGGTTTTGTATGGTCCTTTGAATTTCGGGCGTTCCACTTTTGATGCTAGTTGGAGGATTCAGAATTCGGGTTTGCTTCATGGACCGTGGACAAAGAATTTCTCGACATCTTATTCTGCTTGCTGCTTGGCTGGTGCTGCACACGATCTTTCGTATGATACCAGCTCTCCTGATGAACAACTGGCTAACATAACTACTCTTCATCGCAAGCCCTTGAAGATGTTATCAGGATCATGCTACCTACCACATCCAGATAAGGTGGCGACTGGGGGAGAGGATGCTCATTTTATTTGTGAAGATGAACAAGCAATTGGTGTTGCAGATGGTGTTGGTGGCTGGGCAGATGTTGGTGTTAATGCAGGACTGTATGCCCAGGAACTTGTAGCCAATTCCGCAAGAGCAATTCGAGAGGAACCCAAAGGTTCTTTTAATCCAGTAAGGGTGTTAGAGAAGGCTCACTCAAAAACAAAGGCGTTGGGTTCCTCAACTGTTTGTATCATTGCTCTTATCGATGAGGCACTAAATGCTATTAATTTGGGTGATAGTGGATTCATTGTGATAAGAAATGGGAGCGTGATTTTCAAGTCCCCTGTTCAACAACGCGGGTTCAATTTCCCATATCAATTGGCGAGGAGCGGTACCGAAAGTGATCTACCTAGCTCTGGCGAGGTTTTTACAGTACCTGTTGCTCCAGGAGATATCATTGTTGCTGGAACAGATGGTTTATTTGACAACATGTACAACAACGATATTGTTGGAGTGGTTGTAGGTGCAACTAGAGCTAGATTAGGACCACAAGCAACTGCTCAGAAGATAGCAGCATTGGCTCGTCAGCGAGCTCTTGACACGAAAAGGCAGTCACCATTTTCAGCTGCTGCTCTCGAGTATGGATACCGATTTGATGGAGGCAAACTTGACGACCTAACAGTTGTCGTGTCTTACATATCCAGCTCAGTCAATGAGTGA

Protein sequence

>Msa0716350

MLCVTNLSKLNASIFGCIRETIVTRKQHSVPVTRFNTPVLSLSSLCSSSFLSNSSNCYSSNNVGARKSMASSPSNAILGDVYVDDLISSYSSVQDFTKHAGVYFKGRTHKGFVRGSLSLRRPQQVLYGPLNFGRSTFDASWRIQNSGLLHGPWTKNFSTSYSACCLAGAAHDLSYDTSSPDEQLANITTLHRKPLKMLSGSCYLPHPDKVATGGEDAHFICEDEQAIGVADGVGGWADVGVNAGLYAQELVANSARAIREEPKGSFNPVRVLEKAHSKTKALGSSTVCIIALIDEALNAINLGDSGFIVIRNGSVIFKSPVQQRGFNFPYQLARSGTESDLPSSGEVFTVPVAPGDIIVAGTDGLFDNMYNNDIVGVVVGATRARLGPQATAQKIAALARQRALDTKRQSPFSAAALEYGYRFDGGKLDDLTVVVSYISSSVNE*