Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720000 | XP_003612805.1 | 97.682 | 302 | 7 | 0 | 1 | 302 | 1 | 302 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720000 | sp|Q9FVR6|Y1222_ARATH | 65.347 | 303 | 95 | 4 | 1 | 301 | 1 | 295 | 7.13e-143 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720000 | G7KCB8 | 97.682 | 302 | 7 | 0 | 1 | 302 | 1 | 302 | 0.0 | 592 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025340 | Msa0720000 | 0.805751 | 1.147749e-49 | -8.615850e-47 |
| Msa0076550 | Msa0720000 | 0.801582 | 8.413751e-49 | -8.615850e-47 |
| Msa0089450 | Msa0720000 | -0.825084 | 5.685141e-54 | -8.615850e-47 |
| Msa0112340 | Msa0720000 | 0.803638 | 3.167915e-49 | -8.615850e-47 |
| Msa0624700 | Msa0720000 | 0.801175 | 1.019312e-48 | -8.615850e-47 |
| Msa0633310 | Msa0720000 | 0.834699 | 2.576877e-56 | -8.615850e-47 |
| Msa0716350 | Msa0720000 | 0.811726 | 6.061219e-51 | -8.615850e-47 |
| Msa0720000 | Msa0795850 | 0.803026 | 4.241792e-49 | -8.615850e-47 |
| Msa0720000 | Msa0841350 | 0.927634 | 8.938428e-92 | -8.615850e-47 |
| Msa0720000 | Msa0940550 | 0.825440 | 4.682456e-54 | -8.615850e-47 |
| Msa0720000 | Msa0967540 | 0.800383 | 1.479122e-48 | -8.615850e-47 |
| Msa0720000 | Msa0977090 | 0.825368 | 4.869314e-54 | -8.615850e-47 |
| Msa0720000 | Msa1013560 | 0.820979 | 5.151776e-53 | -8.615850e-47 |
| Msa0720000 | Msa1137800 | 0.838240 | 3.233394e-57 | -8.615850e-47 |
| Msa0720000 | Msa1325270 | 0.800514 | 1.390825e-48 | -8.615850e-47 |
| Msa0720000 | Msa1344350 | -0.824685 | 7.060197e-54 | -8.615850e-47 |
| Msa0720000 | Msa1349720 | 0.808411 | 3.137825e-50 | -8.615850e-47 |
| Msa0720000 | Msa1353040 | 0.826871 | 2.138725e-54 | -8.615850e-47 |
| Msa0720000 | Msa1414970 | 0.808649 | 2.791490e-50 | -8.615850e-47 |
| Msa0720000 | Msa1423270 | 0.927701 | 8.141897e-92 | -8.615850e-47 |
| Msa0155280 | Msa0720000 | 0.805297 | 1.429153e-49 | -8.615850e-47 |
| Msa0155540 | Msa0720000 | 0.819597 | 1.068202e-52 | -8.615850e-47 |
| Msa0160120 | Msa0720000 | 0.814071 | 1.857009e-51 | -8.615850e-47 |
| Msa0183770 | Msa0720000 | -0.804784 | 1.829775e-49 | -8.615850e-47 |
| Msa0218730 | Msa0720000 | 0.800377 | 1.482883e-48 | -8.615850e-47 |
| Msa0220050 | Msa0720000 | 0.828783 | 7.420645e-55 | -8.615850e-47 |
| Msa0367600 | Msa0720000 | 0.809029 | 2.315497e-50 | -8.615850e-47 |
| Msa0369430 | Msa0720000 | 0.837680 | 4.506888e-57 | -8.615850e-47 |
| Msa0399180 | Msa0720000 | 0.809507 | 1.828976e-50 | -8.615850e-47 |
| Msa0453610 | Msa0720000 | 0.819907 | 9.077291e-53 | -8.615850e-47 |
| Msa0463540 | Msa0720000 | 0.801588 | 8.388772e-49 | -8.615850e-47 |
| Msa0253320 | Msa0720000 | 0.803641 | 3.164105e-49 | -8.615850e-47 |
| Msa0290600 | Msa0720000 | 0.812045 | 5.166170e-51 | -8.615850e-47 |
| Msa0297860 | Msa0720000 | 0.804908 | 1.723192e-49 | -8.615850e-47 |
| Msa0307460 | Msa0720000 | 0.801973 | 6.991702e-49 | -8.615850e-47 |
| Msa0311910 | Msa0720000 | 0.877059 | 8.514491e-69 | -8.615850e-47 |
| Msa0504740 | Msa0720000 | 0.864218 | 1.424341e-64 | -8.615850e-47 |
| Msa0550720 | Msa0720000 | 0.800074 | 1.709167e-48 | -8.615850e-47 |
| Msa0580360 | Msa0720000 | 0.819750 | 9.859499e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720000 | MtrunA17_Chr5g0410681 | 97.682 | 302 | 7 | 0 | 1 | 302 | 1 | 302 | 0.0 | 592 |
| Msa0720000 | MtrunA17_Chr3g0136661 | 48.744 | 199 | 96 | 3 | 68 | 265 | 55 | 248 | 5.45e-59 | 190 |
| Msa0720000 | MtrunA17_Chr6g0452121 | 82.927 | 41 | 7 | 0 | 118 | 158 | 3 | 43 | 1.95e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720000 | AT1G32220.1 | 65.347 | 303 | 95 | 4 | 1 | 301 | 1 | 295 | 7.24e-144 | 407 |
| Msa0720000 | AT5G10730.1 | 46.330 | 218 | 111 | 3 | 68 | 284 | 56 | 268 | 4.44e-55 | 181 |
| Msa0720000 | AT5G15910.1 | 46.759 | 216 | 110 | 3 | 70 | 284 | 43 | 254 | 5.32e-51 | 169 |
| Msa0720000 | AT5G15910.2 | 46.296 | 216 | 111 | 3 | 70 | 284 | 2 | 213 | 9.55e-51 | 167 |
Find 95 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGAGATCAATATGAATT+TGG | 0.138307 | 5_1:-15711825 | None:intergenic |
| GTTTATTACTCTGCAGTATT+TGG | 0.173088 | 5_1:+15712703 | Msa0720000:three_prime_UTR |
| CTATTTGCAATTGCAGAATT+TGG | 0.210693 | 5_1:-15712629 | None:intergenic |
| GATCAGGTTACTTGGATTTC+AGG | 0.214857 | 5_1:+15709908 | Msa0720000:CDS |
| TTGGAGATCCTCCTTATCTT+AGG | 0.243233 | 5_1:+15712722 | Msa0720000:three_prime_UTR |
| ACCTGCTTCTGATCTACTTT+TGG | 0.261984 | 5_1:+15712446 | Msa0720000:CDS |
| TGCAATTGCAAATAGTATAA+AGG | 0.289433 | 5_1:+15712637 | Msa0720000:three_prime_UTR |
| GTCTCAACCCTCGGAGGTTT+TGG | 0.292716 | 5_1:+15711164 | Msa0720000:CDS |
| CAGGATTCATATATGGTAAA+AGG | 0.317786 | 5_1:+15712325 | Msa0720000:CDS |
| CTCACAGATGACGACTTCTT+TGG | 0.320954 | 5_1:+15712516 | Msa0720000:CDS |
| GAAGCAGGTAGTGCGCTTAA+TGG | 0.328456 | 5_1:-15712432 | None:intergenic |
| CATGGATAGATCAGGTTACT+TGG | 0.349750 | 5_1:+15709900 | Msa0720000:CDS |
| ACAGAATAATAACACTTCTA+TGG | 0.359494 | 5_1:-15712821 | None:intergenic |
| CTATCCAAGTTCCCTAGTTC+AGG | 0.365581 | 5_1:+15711923 | Msa0720000:CDS |
| TAATATTTAGATTGTAGTCT+TGG | 0.367996 | 5_1:+15709677 | Msa0720000:intron |
| TGGAGATCCTCCTTATCTTA+GGG | 0.368069 | 5_1:+15712723 | Msa0720000:three_prime_UTR |
| AACTGGGACGAAGTACTTCC+TGG | 0.372764 | 5_1:+15711128 | Msa0720000:CDS |
| TTGGGAGGCAATGGGTTTGT+TGG | 0.385926 | 5_1:+15709696 | Msa0720000:CDS |
| ACTGAGATCAATATGAATTT+GGG | 0.389375 | 5_1:-15711824 | None:intergenic |
| GCAATTGCAAATAGTATAAA+GGG | 0.389485 | 5_1:+15712638 | Msa0720000:three_prime_UTR |
| GAGATTCCCTTGGATTTAGT+AGG | 0.395939 | 5_1:+15712363 | Msa0720000:CDS |
| TAGAAGTCATAAGCTTAAAC+AGG | 0.401284 | 5_1:+15709754 | Msa0720000:CDS |
| TTAAGACCAGGATTCATATA+TGG | 0.403014 | 5_1:+15712318 | Msa0720000:CDS |
| TATGGTAAAAGGAGAGTTGA+TGG | 0.406363 | 5_1:+15712336 | Msa0720000:CDS |
| ATAAAGTCACAAGTGGATAA+AGG | 0.411611 | 5_1:-15712861 | None:intergenic |
| GTAAATGCTGCAAACGAATA+TGG | 0.416823 | 5_1:+15711236 | Msa0720000:CDS |
| GCAACATCATCAACACTAAC+AGG | 0.417365 | 5_1:-15712474 | None:intergenic |
| GCTTATGACTTCTATGCCCT+TGG | 0.419174 | 5_1:-15709745 | None:intergenic |
| CTTTCATCGGGGTACTTCAC+AGG | 0.421460 | 5_1:+15711875 | Msa0720000:CDS |
| TTAAGCTCAACTCAACAAAA+TGG | 0.427738 | 5_1:+15708358 | Msa0720000:exon |
| AATATTTAGATTGTAGTCTT+GGG | 0.429498 | 5_1:+15709678 | Msa0720000:intron |
| CTCAGATTCATGGATAGATC+AGG | 0.452914 | 5_1:+15709892 | Msa0720000:CDS |
| AGGAAGCCGCTGATAAAGTA+AGG | 0.454304 | 5_1:+15712562 | Msa0720000:CDS |
| GTCCTACTTACTCAGATTCA+TGG | 0.454390 | 5_1:+15709882 | Msa0720000:CDS |
| ATTGTAGTCTTGGGAGGCAA+TGG | 0.455853 | 5_1:+15709687 | Msa0720000:CDS |
| GCAGTTAGCTGTAGTTATGC+AGG | 0.463776 | 5_1:+15709278 | Msa0720000:CDS |
| AGATTCCCTTGGATTTAGTA+GGG | 0.465440 | 5_1:+15712364 | Msa0720000:CDS |
| GTATAATCCACGTACATGTC+TGG | 0.481235 | 5_1:+15712585 | Msa0720000:exon |
| GAGACTACTGCAGTAGCTCC+AGG | 0.492058 | 5_1:-15711146 | None:intergenic |
| GTTGCATTGGCTGTTATCAA+TGG | 0.498498 | 5_1:+15712492 | Msa0720000:CDS |
| GTGACCTGAACTAGGGAACT+TGG | 0.501095 | 5_1:-15711927 | None:intergenic |
| TTGTAGTCTTGGGAGGCAAT+GGG | 0.505552 | 5_1:+15709688 | Msa0720000:CDS |
| ATGAGACGAGGAGAAACAGC+AGG | 0.508541 | 5_1:-15708398 | None:intergenic |
| TACATGTCTGGTGTCATACT+AGG | 0.513880 | 5_1:+15712597 | Msa0720000:three_prime_UTR |
| GGCTGATGTTATAAGCGAAA+AGG | 0.514531 | 5_1:+15709349 | Msa0720000:CDS |
| ATCGAATAGTGACCTGAACT+AGG | 0.519914 | 5_1:-15711935 | None:intergenic |
| AGCTGTAGTTATGCAGGAGC+AGG | 0.520415 | 5_1:+15709284 | Msa0720000:CDS |
| GAACAAATGAGAAAGATTAA+CGG | 0.530717 | 5_1:+15711194 | Msa0720000:CDS |
| ATCACTGTTCCCCTAAGATA+AGG | 0.533399 | 5_1:-15712733 | None:intergenic |
| GGGTCGTTTGAGAGAGAAAA+CGG | 0.535571 | 5_1:-15708426 | None:intergenic |
| ACCGTCACTGTTTCCCGTGG+TGG | 0.538531 | 5_1:+15708261 | Msa0720000:five_prime_UTR |
| TAGTGTTGATGATGTTGCAT+TGG | 0.542955 | 5_1:+15712479 | Msa0720000:CDS |
| ATGCAAGGCAGCAGTATCCA+AGG | 0.543594 | 5_1:+15709728 | Msa0720000:CDS |
| GCCAAAAGTAGATCAGAAGC+AGG | 0.548352 | 5_1:-15712447 | None:intergenic |
| TCAGGTATTGTCTTAAGACC+AGG | 0.549678 | 5_1:+15712306 | Msa0720000:intron |
| GGGAACAGTGATTGCTAAGG+GGG | 0.553001 | 5_1:+15712744 | Msa0720000:three_prime_UTR |
| AAAGAGAAAAGCAGAATCTG+AGG | 0.554082 | 5_1:+15711898 | Msa0720000:CDS |
| AGGGGAACAGTGATTGCTAA+GGG | 0.556494 | 5_1:+15712742 | Msa0720000:three_prime_UTR |
| TGGCTCCCCTACTAAATCCA+AGG | 0.560635 | 5_1:-15712370 | None:intergenic |
| GCCTCAAATAAAGTCACAAG+TGG | 0.569335 | 5_1:-15712868 | None:intergenic |
| ATTTAGATTGTAGTCTTGGG+AGG | 0.570467 | 5_1:+15709681 | Msa0720000:intron |
| GGAGATCCTCCTTATCTTAG+GGG | 0.580617 | 5_1:+15712724 | Msa0720000:three_prime_UTR |
| GGTAGGTGGAGTGTGAGTGA+AGG | 0.586620 | 5_1:-15708447 | None:intergenic |
| GTAGGTGGAGTGTGAGTGAA+GGG | 0.586862 | 5_1:-15708446 | None:intergenic |
| ATCCATGAATCTGAGTAAGT+AGG | 0.589037 | 5_1:-15709884 | None:intergenic |
| TGTTGGTTCTGCGATATGCA+AGG | 0.592323 | 5_1:+15709713 | Msa0720000:CDS |
| TAGGGGAACAGTGATTGCTA+AGG | 0.593721 | 5_1:+15712741 | Msa0720000:three_prime_UTR |
| TTATACCCTTACTTTATCAG+CGG | 0.594826 | 5_1:-15712568 | None:intergenic |
| ACCTCGTGAAGATGATTAAG+CGG | 0.599968 | 5_1:-15708329 | None:intergenic |
| AGTTATGCAGGAGCAGGTGT+TGG | 0.608243 | 5_1:+15709290 | Msa0720000:CDS |
| CTCGCTACCAAAACCTCCGA+GGG | 0.612537 | 5_1:-15711171 | None:intergenic |
| TAACGGCGAGGCTAATGTTG+TGG | 0.613394 | 5_1:+15711211 | Msa0720000:CDS |
| CAAACCGTCACTGTTTCCCG+TGG | 0.618823 | 5_1:+15708258 | Msa0720000:five_prime_UTR |
| GATTCCCTTGGATTTAGTAG+GGG | 0.622144 | 5_1:+15712365 | Msa0720000:CDS |
| TCGAATAGTGACCTGAACTA+GGG | 0.622863 | 5_1:-15711934 | None:intergenic |
| TCCACCACGGGAAACAGTGA+CGG | 0.629227 | 5_1:-15708262 | None:intergenic |
| ACTGCAGTAGTCTCAACCCT+CGG | 0.629761 | 5_1:+15711155 | Msa0720000:CDS |
| GGCTCCCCTACTAAATCCAA+GGG | 0.633899 | 5_1:-15712369 | None:intergenic |
| ACTGTTCCCCTAAGATAAGG+AGG | 0.635667 | 5_1:-15712730 | None:intergenic |
| GACGTCAACTATAGATGTTG+TGG | 0.638034 | 5_1:+15709328 | Msa0720000:CDS |
| CCTCGCTACCAAAACCTCCG+AGG | 0.646053 | 5_1:-15711172 | None:intergenic |
| GGAAGCCGCTGATAAAGTAA+GGG | 0.650381 | 5_1:+15712563 | Msa0720000:CDS |
| TGCAAGGCAGCAGTATCCAA+GGG | 0.660059 | 5_1:+15709729 | Msa0720000:CDS |
| AAGTCACAAGTGGATAAAGG+TGG | 0.660196 | 5_1:-15712858 | None:intergenic |
| CGTTTGAGAGAGAAAACGGT+GGG | 0.661357 | 5_1:-15708422 | None:intergenic |
| GGGGAACAGTGATTGCTAAG+GGG | 0.669682 | 5_1:+15712743 | Msa0720000:three_prime_UTR |
| ACATCATCAACACTAACAGG+TGG | 0.670086 | 5_1:-15712471 | None:intergenic |
| AAAACGGTGGGAATGAGACG+AGG | 0.678492 | 5_1:-15708410 | None:intergenic |
| TGAGACGAGGAGAAACAGCA+GGG | 0.692443 | 5_1:-15708397 | None:intergenic |
| AATGAGAAAGATTAACGGCG+AGG | 0.694239 | 5_1:+15711199 | Msa0720000:CDS |
| AATAAACTATAGATTCAACA+AGG | 0.715150 | 5_1:-15712687 | None:intergenic |
| TATGACACCAGACATGTACG+TGG | 0.732297 | 5_1:-15712592 | None:intergenic |
| GCAGTAGTCTCAACCCTCGG+AGG | 0.734128 | 5_1:+15711158 | Msa0720000:CDS |
| ACCGCTTAATCATCTTCACG+AGG | 0.735744 | 5_1:+15708328 | Msa0720000:five_prime_UTR |
| TCGTTTGAGAGAGAAAACGG+TGG | 0.746736 | 5_1:-15708423 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTATTTTTTCATTTTT+TGG | + | chr5_1:15708736-15708755 | Msa0720000:intron | 10.0% |
| !! | ATCAAAATTATCAAAATAAT+GGG | - | chr5_1:15709396-15709415 | None:intergenic | 10.0% |
| !! | TATCAAAATTATCAAAATAA+TGG | - | chr5_1:15709397-15709416 | None:intergenic | 10.0% |
| !!! | ATTATTAAAGAAAAATTTTG+TGG | + | chr5_1:15710391-15710410 | Msa0720000:intron | 10.0% |
| !!! | ATTTTTTCATTTTTTGGATT+TGG | + | chr5_1:15708742-15708761 | Msa0720000:intron | 15.0% |
| !!! | ATTTTGATACTTTTCATTTT+TGG | + | chr5_1:15709408-15709427 | Msa0720000:intron | 15.0% |
| !!! | TTTTGATACTTTTCATTTTT+GGG | + | chr5_1:15709409-15709428 | Msa0720000:intron | 15.0% |
| !!! | AAATTGTTTTACAATTTAGT+TGG | - | chr5_1:15709649-15709668 | None:intergenic | 15.0% |
| !!! | TTTAACTCAAATTTTCTTAA+TGG | - | chr5_1:15710735-15710754 | None:intergenic | 15.0% |
| !! | TATAAACATCATAACAATAT+CGG | + | chr5_1:15710965-15710984 | Msa0720000:intron | 15.0% |
| !! | TGTAAGATAGATAAATATAA+TGG | + | chr5_1:15710999-15711018 | Msa0720000:intron | 15.0% |
| !! | GTAAGATAGATAAATATAAT+GGG | + | chr5_1:15711000-15711019 | Msa0720000:intron | 15.0% |
| !!! | AAATTTTAAGTCTTGTTTTA+TGG | - | chr5_1:15711373-15711392 | None:intergenic | 15.0% |
| !!! | TGATGCTTTAAATTTATTTA+TGG | + | chr5_1:15711733-15711752 | Msa0720000:intron | 15.0% |
| !!! | AGTTGTGAATTTTTTATAGA+AGG | - | chr5_1:15708509-15708528 | None:intergenic | 20.0% |
| !!! | TTTTTTCATTTCTCAATTCT+GGG | + | chr5_1:15708528-15708547 | Msa0720000:intron | 20.0% |
| !!! | TTAATTTGTTTGCTAATGAT+AGG | + | chr5_1:15708651-15708670 | Msa0720000:intron | 20.0% |
| !!! | ATAATTCAACTTTTCCATTA+TGG | + | chr5_1:15708842-15708861 | Msa0720000:intron | 20.0% |
| !! | AAAATAGTGAATTACTTGAT+AGG | + | chr5_1:15709565-15709584 | Msa0720000:intron | 20.0% |
| !! | TAATATTTAGATTGTAGTCT+TGG | + | chr5_1:15709677-15709696 | Msa0720000:intron | 20.0% |
| !! | AATATTTAGATTGTAGTCTT+GGG | + | chr5_1:15709678-15709697 | Msa0720000:intron | 20.0% |
| !!! | ATCCAACTTTTTTTTTTACT+CGG | - | chr5_1:15709998-15710017 | None:intergenic | 20.0% |
| !! | TTCTTTCTTGTAATTGTTTA+AGG | + | chr5_1:15710245-15710264 | Msa0720000:intron | 20.0% |
| !! | TCTTTCTTGTAATTGTTTAA+GGG | + | chr5_1:15710246-15710265 | Msa0720000:intron | 20.0% |
| !! | AGCCAATAAAAAAGTAAAAT+AGG | + | chr5_1:15710319-15710338 | Msa0720000:intron | 20.0% |
| !!! | CACCTATTTTACTTTTTTAT+TGG | - | chr5_1:15710324-15710343 | None:intergenic | 20.0% |
| !!! | AATTTGAGACAATGAAATTA+TGG | + | chr5_1:15710599-15710618 | Msa0720000:intron | 20.0% |
| !! | TCTTTGAACTTAATACATAT+AGG | + | chr5_1:15710762-15710781 | Msa0720000:intron | 20.0% |
| !! | CTTTGAACTTAATACATATA+GGG | + | chr5_1:15710763-15710782 | Msa0720000:intron | 20.0% |
| !!! | AGATGTTTTTTATGTAAACT+GGG | + | chr5_1:15711112-15711131 | Msa0720000:CDS | 20.0% |
| !! | GGATAAACAAATTAATTAAG+CGG | - | chr5_1:15711576-15711595 | None:intergenic | 20.0% |
| !! | ACAAAAATGTAAAGAAACAT+TGG | - | chr5_1:15711626-15711645 | None:intergenic | 20.0% |
| !!! | ATGTTTCTTTACATTTTTGT+TGG | + | chr5_1:15711626-15711645 | Msa0720000:intron | 20.0% |
| !!! | GTTTTCATATGAATATAAGT+TGG | - | chr5_1:15712083-15712102 | None:intergenic | 20.0% |
| !! | AATAAACTATAGATTCAACA+AGG | - | chr5_1:15712690-15712709 | None:intergenic | 20.0% |
| !!! | CTTTTTTCATTTCTCAATTC+TGG | + | chr5_1:15708527-15708546 | Msa0720000:intron | 25.0% |
| !!! | ATTTGAGTTTTAGTGAGTAA+TGG | + | chr5_1:15708693-15708712 | Msa0720000:intron | 25.0% |
| !! | CATTGTTTTCATAAACTATC+CGG | + | chr5_1:15709004-15709023 | Msa0720000:intron | 25.0% |
| !! | ATTGTTTTCATAAACTATCC+GGG | + | chr5_1:15709005-15709024 | Msa0720000:intron | 25.0% |
| !!! | CTTATTTCTATAAGTTTTCC+CGG | - | chr5_1:15709026-15709045 | None:intergenic | 25.0% |
| !! | CTAGACATGTTTAGTTTATT+AGG | - | chr5_1:15709946-15709965 | None:intergenic | 25.0% |
| ! | CTAATAAACTAAACATGTCT+AGG | + | chr5_1:15709944-15709963 | Msa0720000:intron | 25.0% |
| ! | CAATAGTGTAAAACAAACTT+GGG | - | chr5_1:15710035-15710054 | None:intergenic | 25.0% |
| !! | TGTGGAACTACATTTTAAAT+AGG | + | chr5_1:15710292-15710311 | Msa0720000:intron | 25.0% |
| ! | TCATTGTCTCAAATTATTAC+TGG | - | chr5_1:15710594-15710613 | None:intergenic | 25.0% |
| !! | CTCAAATTTTCTTAATGGTT+TGG | - | chr5_1:15710730-15710749 | None:intergenic | 25.0% |
| ! | TTGTTGGAGTATATCAATTT+AGG | + | chr5_1:15710859-15710878 | Msa0720000:intron | 25.0% |
| !!! | TAGATAAATATAATGGGTTC+TGG | + | chr5_1:15711006-15711025 | Msa0720000:intron | 25.0% |
| !!! | AGATAAATATAATGGGTTCT+GGG | + | chr5_1:15711007-15711026 | Msa0720000:intron | 25.0% |
| !!! | GAGATGTTTTTTATGTAAAC+TGG | + | chr5_1:15711111-15711130 | Msa0720000:CDS | 25.0% |
| ! | GAACAAATGAGAAAGATTAA+CGG | + | chr5_1:15711194-15711213 | Msa0720000:CDS | 25.0% |
| !!! | TTAAGTCTTGTTTTATGGAA+GGG | - | chr5_1:15711368-15711387 | None:intergenic | 25.0% |
| !!! | TTTAAGTCTTGTTTTATGGA+AGG | - | chr5_1:15711369-15711388 | None:intergenic | 25.0% |
| ! | TGCTTATATATGACAGTTTA+TGG | - | chr5_1:15711443-15711462 | None:intergenic | 25.0% |
| ! | ATAAACTGTCATATATAAGC+AGG | + | chr5_1:15711442-15711461 | Msa0720000:intron | 25.0% |
| ! | AAGTTGAATGTTTACAGATA+TGG | + | chr5_1:15711520-15711539 | Msa0720000:intron | 25.0% |
| !!! | TTATCCAAATATAGCTTTAG+CGG | + | chr5_1:15711590-15711609 | Msa0720000:intron | 25.0% |
| ! | AAATGTAAAGAAACATTGGA+AGG | - | chr5_1:15711622-15711641 | None:intergenic | 25.0% |
| !! | CTGGTTTGTATATATACAAA+GGG | + | chr5_1:15711649-15711668 | Msa0720000:intron | 25.0% |
| ! | TGTATATATACAAAGGGAAA+TGG | + | chr5_1:15711655-15711674 | Msa0720000:intron | 25.0% |
| ! | ACTGAGATCAATATGAATTT+GGG | - | chr5_1:15711827-15711846 | None:intergenic | 25.0% |
| ! | AACTGAGATCAATATGAATT+TGG | - | chr5_1:15711828-15711847 | None:intergenic | 25.0% |
| ! | AATAGTTTCAAGATCATGAA+AGG | - | chr5_1:15711962-15711981 | None:intergenic | 25.0% |
| ! | TAATTAAGCACTTATCACAT+AGG | - | chr5_1:15712177-15712196 | None:intergenic | 25.0% |
| !! | TTTTACAATTGATCAGATCA+AGG | + | chr5_1:15712542-15712561 | Msa0720000:CDS | 25.0% |
| ! | TGCAATTGCAAATAGTATAA+AGG | + | chr5_1:15712637-15712656 | Msa0720000:three_prime_UTR | 25.0% |
| ! | GCAATTGCAAATAGTATAAA+GGG | + | chr5_1:15712638-15712657 | Msa0720000:three_prime_UTR | 25.0% |
| ! | ACAGAATAATAACACTTCTA+TGG | - | chr5_1:15712824-15712843 | None:intergenic | 25.0% |
| TTAAGCTCAACTCAACAAAA+TGG | + | chr5_1:15708358-15708377 | Msa0720000:exon | 30.0% | |
| !!! | TGATTTTTGAAATGCAAGGT+AGG | - | chr5_1:15708467-15708486 | None:intergenic | 30.0% |
| !!! | TCTGCTATTTTTCTACTGTT+TGG | + | chr5_1:15708593-15708612 | Msa0720000:intron | 30.0% |
| CCTCAGTAAAACAAATTTCA+TGG | - | chr5_1:15708628-15708647 | None:intergenic | 30.0% | |
| !!! | CCATGAAATTTGTTTTACTG+AGG | + | chr5_1:15708625-15708644 | Msa0720000:intron | 30.0% |
| CTCACTAAAACTCAAATTGA+TGG | - | chr5_1:15708690-15708709 | None:intergenic | 30.0% | |
| GTTAACGTAAACAACCATAA+TGG | - | chr5_1:15708859-15708878 | None:intergenic | 30.0% | |
| AGACTGTTTGGAAGAAATTA+CGG | - | chr5_1:15709084-15709103 | None:intergenic | 30.0% | |
| ATTGTCTTGTGATTAAAGAC+TGG | + | chr5_1:15709192-15709211 | Msa0720000:intron | 30.0% | |
| TTAGTAATCCATGGATCATA+GGG | + | chr5_1:15709478-15709497 | Msa0720000:intron | 30.0% | |
| TATCAATAGACTCTCTATCA+TGG | - | chr5_1:15709523-15709542 | None:intergenic | 30.0% | |
| TAGAAGTCATAAGCTTAAAC+AGG | + | chr5_1:15709754-15709773 | Msa0720000:CDS | 30.0% | |
| ACATAGAAGAGACAAATAGA+CGG | - | chr5_1:15709814-15709833 | None:intergenic | 30.0% | |
| TGCCGAGTAAAAAAAAAAGT+TGG | + | chr5_1:15709993-15710012 | Msa0720000:intron | 30.0% | |
| CCAATAGTGTAAAACAAACT+TGG | - | chr5_1:15710036-15710055 | None:intergenic | 30.0% | |
| !!! | CCAAGTTTGTTTTACACTAT+TGG | + | chr5_1:15710033-15710052 | Msa0720000:intron | 30.0% |
| TAGATCAAGTGAGATACAAT+GGG | - | chr5_1:15710113-15710132 | None:intergenic | 30.0% | |
| TTAGATCAAGTGAGATACAA+TGG | - | chr5_1:15710114-15710133 | None:intergenic | 30.0% | |
| TTGTATCTCACTTGATCTAA+TGG | + | chr5_1:15710114-15710133 | Msa0720000:intron | 30.0% | |
| GTAACTCATTGATGTAATGT+TGG | + | chr5_1:15710138-15710157 | Msa0720000:intron | 30.0% | |
| AAAACCATCTACATGTTTAG+TGG | - | chr5_1:15710218-15710237 | None:intergenic | 30.0% | |
| ! | TGCATATTTCAGTGTCTTTT+TGG | + | chr5_1:15710630-15710649 | Msa0720000:intron | 30.0% |
| TTACTGCTGTATCTTCTTTA+TGG | + | chr5_1:15710830-15710849 | Msa0720000:intron | 30.0% | |
| TTCTTTATGGTAGCAATTGT+TGG | + | chr5_1:15710843-15710862 | Msa0720000:intron | 30.0% | |
| CTTATTTATAAGACCGTACT+TGG | - | chr5_1:15710899-15710918 | None:intergenic | 30.0% | |
| ! | CAAGTACGGTCTTATAAATA+AGG | + | chr5_1:15710897-15710916 | Msa0720000:intron | 30.0% |
| !!! | TGATCTCAGTATCTTTTTTC+TGG | + | chr5_1:15711057-15711076 | Msa0720000:intron | 30.0% |
| TTGTAAACAGCACATAACAA+TGG | - | chr5_1:15711401-15711420 | None:intergenic | 30.0% | |
| !! | ATTGTTATGTGCTGTTTACA+AGG | + | chr5_1:15711400-15711419 | Msa0720000:intron | 30.0% |
| AATGTTTACAGATATGGAGA+TGG | + | chr5_1:15711526-15711545 | Msa0720000:intron | 30.0% | |
| ! | TTCTTTACATTTTTGTTGGC+TGG | + | chr5_1:15711630-15711649 | Msa0720000:intron | 30.0% |
| !! | GCTGGTTTGTATATATACAA+AGG | + | chr5_1:15711648-15711667 | Msa0720000:intron | 30.0% |
| TATATGAAGTACGTTATGTC+TGG | + | chr5_1:15711695-15711714 | Msa0720000:intron | 30.0% | |
| ATATGAAGTACGTTATGTCT+GGG | + | chr5_1:15711696-15711715 | Msa0720000:intron | 30.0% | |
| !! | ACCATCGTTTTTACTTTCAT+CGG | + | chr5_1:15711862-15711881 | Msa0720000:CDS | 30.0% |
| AGATTATTTGAGAGAGCTTA+TGG | + | chr5_1:15711986-15712005 | Msa0720000:intron | 30.0% | |
| AGTAAGCTAAAAACAGCTTA+TGG | - | chr5_1:15712030-15712049 | None:intergenic | 30.0% | |
| TTATCCAAACAGAACATTGA+AGG | + | chr5_1:15712203-15712222 | Msa0720000:intron | 30.0% | |
| TTAAGACCAGGATTCATATA+TGG | + | chr5_1:15712318-15712337 | Msa0720000:CDS | 30.0% | |
| ! | CTTTTACCATATATGAATCC+TGG | - | chr5_1:15712327-15712346 | None:intergenic | 30.0% |
| CAGGATTCATATATGGTAAA+AGG | + | chr5_1:15712325-15712344 | Msa0720000:CDS | 30.0% | |
| !!! | GATTTTAGAATTCTTTCAGC+TGG | - | chr5_1:15712393-15712412 | None:intergenic | 30.0% |
| TTATACCCTTACTTTATCAG+CGG | - | chr5_1:15712571-15712590 | None:intergenic | 30.0% | |
| CTATTTGCAATTGCAGAATT+TGG | - | chr5_1:15712632-15712651 | None:intergenic | 30.0% | |
| ! | TAAAGGGAGTGTAAAAAATG+AGG | + | chr5_1:15712654-15712673 | Msa0720000:three_prime_UTR | 30.0% |
| GTTTATTACTCTGCAGTATT+TGG | + | chr5_1:15712703-15712722 | Msa0720000:three_prime_UTR | 30.0% | |
| ATAAAGTCACAAGTGGATAA+AGG | - | chr5_1:15712864-15712883 | None:intergenic | 30.0% | |
| AGAAAAAGAAACATCCACCA+CGG | - | chr5_1:15708278-15708297 | None:intergenic | 35.0% | |
| !!! | TTTTTGAAATGCAAGGTAGG+TGG | - | chr5_1:15708464-15708483 | None:intergenic | 35.0% |
| !!! | CCTGTGATTTTTGAAATGCA+AGG | - | chr5_1:15708471-15708490 | None:intergenic | 35.0% |
| CCTTGCATTTCAAAAATCAC+AGG | + | chr5_1:15708468-15708487 | Msa0720000:CDS | 35.0% | |
| CTCACATGCAACACATAATT+TGG | - | chr5_1:15708881-15708900 | None:intergenic | 35.0% | |
| TGCTTAAATATGTCCCTTTG+TGG | + | chr5_1:15709453-15709472 | Msa0720000:intron | 35.0% | |
| TGGATTACTAACACCACAAA+GGG | - | chr5_1:15709469-15709488 | None:intergenic | 35.0% | |
| ! | ATGGATTACTAACACCACAA+AGG | - | chr5_1:15709470-15709489 | None:intergenic | 35.0% |
| ! | TTTGTGGTGTTAGTAATCCA+TGG | + | chr5_1:15709469-15709488 | Msa0720000:intron | 35.0% |
| GTTAGTAATCCATGGATCAT+AGG | + | chr5_1:15709477-15709496 | Msa0720000:intron | 35.0% | |
| ! | ATTTAGATTGTAGTCTTGGG+AGG | + | chr5_1:15709681-15709700 | Msa0720000:intron | 35.0% |
| ATAGAAGAGACAAATAGACG+GGG | - | chr5_1:15709812-15709831 | None:intergenic | 35.0% | |
| CATAGAAGAGACAAATAGAC+GGG | - | chr5_1:15709813-15709832 | None:intergenic | 35.0% | |
| !! | CGACTGAGATTTTGTTTAAC+AGG | + | chr5_1:15709852-15709871 | Msa0720000:intron | 35.0% |
| !! | GAGATTTTGTTTAACAGGTC+AGG | + | chr5_1:15709857-15709876 | Msa0720000:intron | 35.0% |
| ATCCATGAATCTGAGTAAGT+AGG | - | chr5_1:15709887-15709906 | None:intergenic | 35.0% | |
| ACTAAACATGTCTAGGTCTA+TGG | + | chr5_1:15709951-15709970 | Msa0720000:intron | 35.0% | |
| TGGATCAAGTGAGATACAAT+GGG | - | chr5_1:15710069-15710088 | None:intergenic | 35.0% | |
| TTGGATCAAGTGAGATACAA+TGG | - | chr5_1:15710070-15710089 | None:intergenic | 35.0% | |
| TTGTATCTCACTTGATCCAA+TGG | + | chr5_1:15710070-15710089 | Msa0720000:intron | 35.0% | |
| CTTAATGATCGTTACACCAT+TGG | - | chr5_1:15710089-15710108 | None:intergenic | 35.0% | |
| AAAGAGTAGAACCTTGTCTA+AGG | + | chr5_1:15710432-15710451 | Msa0720000:intron | 35.0% | |
| AAGAGTAGAACCTTGTCTAA+GGG | + | chr5_1:15710433-15710452 | Msa0720000:intron | 35.0% | |
| TGTTTAAACACCCTTAGACA+AGG | - | chr5_1:15710446-15710465 | None:intergenic | 35.0% | |
| !! | TAAGGGTGTTTAAACATGTG+CGG | + | chr5_1:15710450-15710469 | Msa0720000:intron | 35.0% |
| ATCCAGTCAAACCTTCTTAT+CGG | - | chr5_1:15710494-15710513 | None:intergenic | 35.0% | |
| !! | TTTCAGTGTCTTTTTGGTGT+TGG | + | chr5_1:15710636-15710655 | Msa0720000:intron | 35.0% |
| AGAGGGAGACAAAAAATCTA+CGG | + | chr5_1:15710703-15710722 | Msa0720000:intron | 35.0% | |
| ATCTGGTTAGAGAGAACAAT+GGG | - | chr5_1:15710924-15710943 | None:intergenic | 35.0% | |
| TATCTGGTTAGAGAGAACAA+TGG | - | chr5_1:15710925-15710944 | None:intergenic | 35.0% | |
| TTCTCTCTAACCAGATATTC+TGG | + | chr5_1:15710928-15710947 | Msa0720000:intron | 35.0% | |
| CATAAATCAGCCAGAATATC+TGG | - | chr5_1:15710941-15710960 | None:intergenic | 35.0% | |
| AAAAACATCTCCTGCACATT+AGG | - | chr5_1:15711102-15711121 | None:intergenic | 35.0% | |
| GTAAATGCTGCAAACGAATA+TGG | + | chr5_1:15711236-15711255 | Msa0720000:CDS | 35.0% | |
| CAAAATAACGCTCAATGAGA+TGG | - | chr5_1:15711266-15711285 | None:intergenic | 35.0% | |
| AGGGAATGCATGAAAGTTTA+TGG | - | chr5_1:15711349-15711368 | None:intergenic | 35.0% | |
| CTAACCGCTAAAGCTATATT+TGG | - | chr5_1:15711597-15711616 | None:intergenic | 35.0% | |
| !! | CCATCGTTTTTACTTTCATC+GGG | + | chr5_1:15711863-15711882 | Msa0720000:CDS | 35.0% |
| !! | CATCGTTTTTACTTTCATCG+GGG | + | chr5_1:15711864-15711883 | Msa0720000:CDS | 35.0% |
| AAAGAGAAAAGCAGAATCTG+AGG | + | chr5_1:15711898-15711917 | Msa0720000:CDS | 35.0% | |
| ! | GTTGGTTTCATATGCTATCT+TGG | - | chr5_1:15712065-15712084 | None:intergenic | 35.0% |
| ATGTCCTTCAATGTTCTGTT+TGG | - | chr5_1:15712210-15712229 | None:intergenic | 35.0% | |
| !! | CAGTGAATTTTCGAGAATGA+AGG | - | chr5_1:15712270-15712289 | None:intergenic | 35.0% |
| AGACAATACCTGAAGATGTT+GGG | - | chr5_1:15712299-15712318 | None:intergenic | 35.0% | |
| AAGACAATACCTGAAGATGT+TGG | - | chr5_1:15712300-15712319 | None:intergenic | 35.0% | |
| TATGGTAAAAGGAGAGTTGA+TGG | + | chr5_1:15712336-15712355 | Msa0720000:CDS | 35.0% | |
| AGATTCCCTTGGATTTAGTA+GGG | + | chr5_1:15712364-15712383 | Msa0720000:CDS | 35.0% | |
| !! | TAGTGTTGATGATGTTGCAT+TGG | + | chr5_1:15712479-15712498 | Msa0720000:CDS | 35.0% |
| GAAAAAGAAACATCCACCAC+GGG | - | chr5_1:15708277-15708296 | None:intergenic | 40.0% | |
| ACCTCGTGAAGATGATTAAG+CGG | - | chr5_1:15708332-15708351 | None:intergenic | 40.0% | |
| AAGACACTTGTGAGACTGTT+TGG | - | chr5_1:15709096-15709115 | None:intergenic | 40.0% | |
| AACTTAGAGCTTGGTTGGAT+TGG | - | chr5_1:15709144-15709163 | None:intergenic | 40.0% | |
| AGCAAAACTTAGAGCTTGGT+TGG | - | chr5_1:15709149-15709168 | None:intergenic | 40.0% | |
| AGGAAGCAAAACTTAGAGCT+TGG | - | chr5_1:15709153-15709172 | None:intergenic | 40.0% | |
| TTTGCTTCCTCTTTGCAATG+TGG | + | chr5_1:15709163-15709182 | Msa0720000:intron | 40.0% | |
| TTGCTTCCTCTTTGCAATGT+GGG | + | chr5_1:15709164-15709183 | Msa0720000:intron | 40.0% | |
| ACAGCTAACTGCAAATCTAC+AGG | - | chr5_1:15709270-15709289 | None:intergenic | 40.0% | |
| GACGTCAACTATAGATGTTG+TGG | + | chr5_1:15709328-15709347 | Msa0720000:CDS | 40.0% | |
| GGCTGATGTTATAAGCGAAA+AGG | + | chr5_1:15709349-15709368 | Msa0720000:CDS | 40.0% | |
| TCTATTGATACTCATGCGAC+TGG | + | chr5_1:15709533-15709552 | Msa0720000:intron | 40.0% | |
| GTCCTACTTACTCAGATTCA+TGG | + | chr5_1:15709882-15709901 | Msa0720000:CDS | 40.0% | |
| CTCAGATTCATGGATAGATC+AGG | + | chr5_1:15709892-15709911 | Msa0720000:CDS | 40.0% | |
| CATGGATAGATCAGGTTACT+TGG | + | chr5_1:15709900-15709919 | Msa0720000:CDS | 40.0% | |
| GATCAGGTTACTTGGATTTC+AGG | + | chr5_1:15709908-15709927 | Msa0720000:CDS | 40.0% | |
| GTGTAAAACAAACTTGGGCA+TGG | - | chr5_1:15710030-15710049 | None:intergenic | 40.0% | |
| CTTGCCACTAAACATGTAGA+TGG | + | chr5_1:15710211-15710230 | Msa0720000:intron | 40.0% | |
| ! | ATAGGTGTTGTACAAACGAG+TGG | + | chr5_1:15710337-15710356 | Msa0720000:intron | 40.0% |
| GTGGTCACACAAGACAATAT+AGG | + | chr5_1:15710356-15710375 | Msa0720000:intron | 40.0% | |
| TCATAGGACTACCGATAAGA+AGG | + | chr5_1:15710480-15710499 | Msa0720000:intron | 40.0% | |
| TACCGATAAGAAGGTTTGAC+TGG | + | chr5_1:15710489-15710508 | Msa0720000:intron | 40.0% | |
| AAGAAGGTTTGACTGGATGA+TGG | + | chr5_1:15710496-15710515 | Msa0720000:intron | 40.0% | |
| AGTGCAATCTTCAGATGTAG+AGG | + | chr5_1:15710521-15710540 | Msa0720000:intron | 40.0% | |
| GTGCAATCTTCAGATGTAGA+GGG | + | chr5_1:15710522-15710541 | Msa0720000:intron | 40.0% | |
| ! | TCAAATTATTACTGGTGCCG+AGG | - | chr5_1:15710586-15710605 | None:intergenic | 40.0% |
| TGTAGTACCAACACTTCAGA+TGG | - | chr5_1:15710678-15710697 | None:intergenic | 40.0% | |
| !! | CTGAAGTGTTGGTACTACAT+AGG | + | chr5_1:15710679-15710698 | Msa0720000:intron | 40.0% |
| TGTTGGTACTACATAGGTAG+AGG | + | chr5_1:15710685-15710704 | Msa0720000:intron | 40.0% | |
| GTTGGTACTACATAGGTAGA+GGG | + | chr5_1:15710686-15710705 | Msa0720000:intron | 40.0% | |
| GAGGGAGACAAAAAATCTAC+GGG | + | chr5_1:15710704-15710723 | Msa0720000:intron | 40.0% | |
| AGCTGTATCACACTCTATGT+GGG | - | chr5_1:15710807-15710826 | None:intergenic | 40.0% | |
| AAGCTGTATCACACTCTATG+TGG | - | chr5_1:15710808-15710827 | None:intergenic | 40.0% | |
| ACATAGAGTGTGATACAGCT+TGG | + | chr5_1:15710807-15710826 | Msa0720000:intron | 40.0% | |
| CAAGACATACAGACCAAGTA+CGG | + | chr5_1:15710883-15710902 | Msa0720000:intron | 40.0% | |
| AATGAGAAAGATTAACGGCG+AGG | + | chr5_1:15711199-15711218 | Msa0720000:CDS | 40.0% | |
| GGGAAATGGTTTGATGCTTA+TGG | + | chr5_1:15711669-15711688 | Msa0720000:intron | 40.0% | |
| TGAATTTGGGAATTCCTGCA+AGG | - | chr5_1:15711814-15711833 | None:intergenic | 40.0% | |
| CCCGATGAAAGTAAAAACGA+TGG | - | chr5_1:15711866-15711885 | None:intergenic | 40.0% | |
| TCGAATAGTGACCTGAACTA+GGG | - | chr5_1:15711937-15711956 | None:intergenic | 40.0% | |
| ATCGAATAGTGACCTGAACT+AGG | - | chr5_1:15711938-15711957 | None:intergenic | 40.0% | |
| ATGCTATCTTGGAGAGCTTA+TGG | - | chr5_1:15712054-15712073 | None:intergenic | 40.0% | |
| TGAAACATCCCAACATCTTC+AGG | + | chr5_1:15712288-15712307 | Msa0720000:intron | 40.0% | |
| ! | TCAGGTATTGTCTTAAGACC+AGG | + | chr5_1:15712306-15712325 | Msa0720000:intron | 40.0% |
| !!! | TGATGGTTTTGAGATTCCCT+TGG | + | chr5_1:15712353-15712372 | Msa0720000:CDS | 40.0% |
| GAGATTCCCTTGGATTTAGT+AGG | + | chr5_1:15712363-15712382 | Msa0720000:CDS | 40.0% | |
| GATTCCCTTGGATTTAGTAG+GGG | + | chr5_1:15712365-15712384 | Msa0720000:CDS | 40.0% | |
| ! | ACCTGCTTCTGATCTACTTT+TGG | + | chr5_1:15712446-15712465 | Msa0720000:CDS | 40.0% |
| ACATCATCAACACTAACAGG+TGG | - | chr5_1:15712474-15712493 | None:intergenic | 40.0% | |
| GCAACATCATCAACACTAAC+AGG | - | chr5_1:15712477-15712496 | None:intergenic | 40.0% | |
| !! | GTTGCATTGGCTGTTATCAA+TGG | + | chr5_1:15712492-15712511 | Msa0720000:CDS | 40.0% |
| GTATAATCCACGTACATGTC+TGG | + | chr5_1:15712585-15712604 | Msa0720000:exon | 40.0% | |
| !! | TACATGTCTGGTGTCATACT+AGG | + | chr5_1:15712597-15712616 | Msa0720000:three_prime_UTR | 40.0% |
| TTGGAGATCCTCCTTATCTT+AGG | + | chr5_1:15712722-15712741 | Msa0720000:three_prime_UTR | 40.0% | |
| TGGAGATCCTCCTTATCTTA+GGG | + | chr5_1:15712723-15712742 | Msa0720000:three_prime_UTR | 40.0% | |
| ATCACTGTTCCCCTAAGATA+AGG | - | chr5_1:15712736-15712755 | None:intergenic | 40.0% | |
| AAGTCACAAGTGGATAAAGG+TGG | - | chr5_1:15712861-15712880 | None:intergenic | 40.0% | |
| ACCGCTTAATCATCTTCACG+AGG | + | chr5_1:15708328-15708347 | Msa0720000:five_prime_UTR | 45.0% | |
| CGTTTGAGAGAGAAAACGGT+GGG | - | chr5_1:15708425-15708444 | None:intergenic | 45.0% | |
| TCGTTTGAGAGAGAAAACGG+TGG | - | chr5_1:15708426-15708445 | None:intergenic | 45.0% | |
| GGGTCGTTTGAGAGAGAAAA+CGG | - | chr5_1:15708429-15708448 | None:intergenic | 45.0% | |
| TCAAGACCCACATTGCAAAG+AGG | - | chr5_1:15709173-15709192 | None:intergenic | 45.0% | |
| GCAGTTAGCTGTAGTTATGC+AGG | + | chr5_1:15709278-15709297 | Msa0720000:CDS | 45.0% | |
| GTAATCCATGGATCATAGGG+AGG | + | chr5_1:15709481-15709500 | Msa0720000:intron | 45.0% | |
| ATCTTCCTCCCTATGATCCA+TGG | - | chr5_1:15709489-15709508 | None:intergenic | 45.0% | |
| ! | ATTGTAGTCTTGGGAGGCAA+TGG | + | chr5_1:15709687-15709706 | Msa0720000:CDS | 45.0% |
| ! | TTGTAGTCTTGGGAGGCAAT+GGG | + | chr5_1:15709688-15709707 | Msa0720000:CDS | 45.0% |
| !! | TGTTGGTTCTGCGATATGCA+AGG | + | chr5_1:15709713-15709732 | Msa0720000:CDS | 45.0% |
| GCTTATGACTTCTATGCCCT+TGG | - | chr5_1:15709748-15709767 | None:intergenic | 45.0% | |
| GAAACACCTGCAACTTTGTG+TGG | + | chr5_1:15710274-15710293 | Msa0720000:intron | 45.0% | |
| GTAGTTCCACACAAAGTTGC+AGG | - | chr5_1:15710283-15710302 | None:intergenic | 45.0% | |
| CATGTGCGGAAAAGACTCAT+AGG | + | chr5_1:15710464-15710483 | Msa0720000:intron | 45.0% | |
| ATGTAGAGGGCTATGAAGCA+CGG | + | chr5_1:15710535-15710554 | Msa0720000:intron | 45.0% | |
| ! | ACGTCTTCCATCTGAAGTGT+TGG | + | chr5_1:15710668-15710687 | Msa0720000:intron | 45.0% |
| !! | TATAATGGGTTCTGGGCTTC+TGG | + | chr5_1:15711014-15711033 | Msa0720000:intron | 45.0% |
| CAGTGTTATGCCTAATGTGC+AGG | + | chr5_1:15711089-15711108 | Msa0720000:intron | 45.0% | |
| TGAGACGTGAATAGCACATC+TGG | - | chr5_1:15711775-15711794 | None:intergenic | 45.0% | |
| ! | TGTGCTATTCACGTCTCACA+CGG | + | chr5_1:15711777-15711796 | Msa0720000:intron | 45.0% |
| CTATCCAAGTTCCCTAGTTC+AGG | + | chr5_1:15711923-15711942 | Msa0720000:CDS | 45.0% | |
| GCCAAAAGTAGATCAGAAGC+AGG | - | chr5_1:15712450-15712469 | None:intergenic | 45.0% | |
| CTCACAGATGACGACTTCTT+TGG | + | chr5_1:15712516-15712535 | Msa0720000:CDS | 45.0% | |
| AGGAAGCCGCTGATAAAGTA+AGG | + | chr5_1:15712562-15712581 | Msa0720000:CDS | 45.0% | |
| GGAAGCCGCTGATAAAGTAA+GGG | + | chr5_1:15712563-15712582 | Msa0720000:CDS | 45.0% | |
| TATGACACCAGACATGTACG+TGG | - | chr5_1:15712595-15712614 | None:intergenic | 45.0% | |
| GGAGATCCTCCTTATCTTAG+GGG | + | chr5_1:15712724-15712743 | Msa0720000:three_prime_UTR | 45.0% | |
| ACTGTTCCCCTAAGATAAGG+AGG | - | chr5_1:15712733-15712752 | None:intergenic | 45.0% | |
| TAGGGGAACAGTGATTGCTA+AGG | + | chr5_1:15712741-15712760 | Msa0720000:three_prime_UTR | 45.0% | |
| AGGGGAACAGTGATTGCTAA+GGG | + | chr5_1:15712742-15712761 | Msa0720000:three_prime_UTR | 45.0% | |
| TGAGACGAGGAGAAACAGCA+GGG | - | chr5_1:15708400-15708419 | None:intergenic | 50.0% | |
| ATGAGACGAGGAGAAACAGC+AGG | - | chr5_1:15708401-15708420 | None:intergenic | 50.0% | |
| AAAACGGTGGGAATGAGACG+AGG | - | chr5_1:15708413-15708432 | None:intergenic | 50.0% | |
| GTAGGTGGAGTGTGAGTGAA+GGG | - | chr5_1:15708449-15708468 | None:intergenic | 50.0% | |
| AGCTGTAGTTATGCAGGAGC+AGG | + | chr5_1:15709284-15709303 | Msa0720000:CDS | 50.0% | |
| AGTTATGCAGGAGCAGGTGT+TGG | + | chr5_1:15709290-15709309 | Msa0720000:CDS | 50.0% | |
| ! | TTGGGAGGCAATGGGTTTGT+TGG | + | chr5_1:15709696-15709715 | Msa0720000:CDS | 50.0% |
| ATGCAAGGCAGCAGTATCCA+AGG | + | chr5_1:15709728-15709747 | Msa0720000:CDS | 50.0% | |
| TGCAAGGCAGCAGTATCCAA+GGG | + | chr5_1:15709729-15709748 | Msa0720000:CDS | 50.0% | |
| CAGACATGAGACTGACACCT+CGG | + | chr5_1:15710566-15710585 | Msa0720000:intron | 50.0% | |
| ! | AACTGGGACGAAGTACTTCC+TGG | + | chr5_1:15711128-15711147 | Msa0720000:CDS | 50.0% |
| ACTGCAGTAGTCTCAACCCT+CGG | + | chr5_1:15711155-15711174 | Msa0720000:CDS | 50.0% | |
| TAACGGCGAGGCTAATGTTG+TGG | + | chr5_1:15711211-15711230 | Msa0720000:CDS | 50.0% | |
| ! | CGGCTGTTCTTTTACCTTGC+AGG | + | chr5_1:15711797-15711816 | Msa0720000:intron | 50.0% |
| ! | CTTTCATCGGGGTACTTCAC+AGG | + | chr5_1:15711875-15711894 | Msa0720000:CDS | 50.0% |
| GTGACCTGAACTAGGGAACT+TGG | - | chr5_1:15711930-15711949 | None:intergenic | 50.0% | |
| GGCTCCCCTACTAAATCCAA+GGG | - | chr5_1:15712372-15712391 | None:intergenic | 50.0% | |
| TGGCTCCCCTACTAAATCCA+AGG | - | chr5_1:15712373-15712392 | None:intergenic | 50.0% | |
| GAAGCAGGTAGTGCGCTTAA+TGG | - | chr5_1:15712435-15712454 | None:intergenic | 50.0% | |
| GGGGAACAGTGATTGCTAAG+GGG | + | chr5_1:15712743-15712762 | Msa0720000:three_prime_UTR | 50.0% | |
| GGGAACAGTGATTGCTAAGG+GGG | + | chr5_1:15712744-15712763 | Msa0720000:three_prime_UTR | 50.0% | |
| CAAACCGTCACTGTTTCCCG+TGG | + | chr5_1:15708258-15708277 | Msa0720000:five_prime_UTR | 55.0% | |
| TCCACCACGGGAAACAGTGA+CGG | - | chr5_1:15708265-15708284 | None:intergenic | 55.0% | |
| GGTAGGTGGAGTGTGAGTGA+AGG | - | chr5_1:15708450-15708469 | None:intergenic | 55.0% | |
| GAGACTACTGCAGTAGCTCC+AGG | - | chr5_1:15711149-15711168 | None:intergenic | 55.0% | |
| ! | GTCTCAACCCTCGGAGGTTT+TGG | + | chr5_1:15711164-15711183 | Msa0720000:CDS | 55.0% |
| CTCGCTACCAAAACCTCCGA+GGG | - | chr5_1:15711174-15711193 | None:intergenic | 55.0% | |
| ACCGTCACTGTTTCCCGTGG+TGG | + | chr5_1:15708261-15708280 | Msa0720000:five_prime_UTR | 60.0% | |
| GCAGTAGTCTCAACCCTCGG+AGG | + | chr5_1:15711158-15711177 | Msa0720000:CDS | 60.0% | |
| CCTCGCTACCAAAACCTCCG+AGG | - | chr5_1:15711175-15711194 | None:intergenic | 60.0% | |
| !!! | CCTCGGAGGTTTTGGTAGCG+AGG | + | chr5_1:15711172-15711191 | Msa0720000:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 15708254 | 15712883 | 15708254 | ID=Msa0720000;Name=Msa0720000 |
| chr5_1 | mRNA | 15708254 | 15712883 | 15708254 | ID=Msa0720000-mRNA-1;Parent=Msa0720000;Name=Msa0720000-mRNA-1;_AED=0.23;_eAED=0.23;_QI=123|1|1|1|1|1|7|293|302 |
| chr5_1 | exon | 15708254 | 15708489 | 15708254 | ID=Msa0720000-mRNA-1:exon:6065;Parent=Msa0720000-mRNA-1 |
| chr5_1 | exon | 15709274 | 15709370 | 15709274 | ID=Msa0720000-mRNA-1:exon:6066;Parent=Msa0720000-mRNA-1 |
| chr5_1 | exon | 15709687 | 15709775 | 15709687 | ID=Msa0720000-mRNA-1:exon:6067;Parent=Msa0720000-mRNA-1 |
| chr5_1 | exon | 15709874 | 15709929 | 15709874 | ID=Msa0720000-mRNA-1:exon:6068;Parent=Msa0720000-mRNA-1 |
| chr5_1 | exon | 15711111 | 15711257 | 15711111 | ID=Msa0720000-mRNA-1:exon:6069;Parent=Msa0720000-mRNA-1 |
| chr5_1 | exon | 15711819 | 15711944 | 15711819 | ID=Msa0720000-mRNA-1:exon:6070;Parent=Msa0720000-mRNA-1 |
| chr5_1 | exon | 15712310 | 15712883 | 15712310 | ID=Msa0720000-mRNA-1:exon:6071;Parent=Msa0720000-mRNA-1 |
| chr5_1 | five_prime_UTR | 15708254 | 15708376 | 15708254 | ID=Msa0720000-mRNA-1:five_prime_utr;Parent=Msa0720000-mRNA-1 |
| chr5_1 | CDS | 15708377 | 15708489 | 15708377 | ID=Msa0720000-mRNA-1:cds;Parent=Msa0720000-mRNA-1 |
| chr5_1 | CDS | 15709274 | 15709370 | 15709274 | ID=Msa0720000-mRNA-1:cds;Parent=Msa0720000-mRNA-1 |
| chr5_1 | CDS | 15709687 | 15709775 | 15709687 | ID=Msa0720000-mRNA-1:cds;Parent=Msa0720000-mRNA-1 |
| chr5_1 | CDS | 15709874 | 15709929 | 15709874 | ID=Msa0720000-mRNA-1:cds;Parent=Msa0720000-mRNA-1 |
| chr5_1 | CDS | 15711111 | 15711257 | 15711111 | ID=Msa0720000-mRNA-1:cds;Parent=Msa0720000-mRNA-1 |
| chr5_1 | CDS | 15711819 | 15711944 | 15711819 | ID=Msa0720000-mRNA-1:cds;Parent=Msa0720000-mRNA-1 |
| chr5_1 | CDS | 15712310 | 15712590 | 15712310 | ID=Msa0720000-mRNA-1:cds;Parent=Msa0720000-mRNA-1 |
| chr5_1 | three_prime_UTR | 15712591 | 15712883 | 15712591 | ID=Msa0720000-mRNA-1:three_prime_utr;Parent=Msa0720000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
