Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089450 | sp|Q84WT5|XYN5L_ARATH | 47.523 | 545 | 254 | 7 | 1 | 535 | 41 | 563 | 9.53e-173 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089450 | A0A396JV30 | 95.941 | 542 | 21 | 1 | 1 | 541 | 46 | 587 | 0.0 | 1081 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0089450 | Msa0136090 | 0.804566 | 2.031622e-49 | -8.615850e-47 |
| Msa0089450 | Msa0416530 | -0.823378 | 1.430809e-53 | -8.615850e-47 |
| Msa0089450 | Msa0720000 | -0.825084 | 5.685141e-54 | -8.615850e-47 |
| Msa0089450 | Msa0841350 | -0.842648 | 2.274896e-58 | -8.615850e-47 |
| Msa0089450 | Msa0940550 | -0.801356 | 9.356854e-49 | -8.615850e-47 |
| Msa0089450 | Msa1344350 | 0.964887 | 6.757026e-124 | -8.615850e-47 |
| Msa0089450 | Msa1423270 | -0.845089 | 5.048505e-59 | -8.615850e-47 |
| Msa0089450 | Msa1439400 | -0.803022 | 4.251172e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089450 | MtrunA17_Chr1g0207241 | 95.941 | 542 | 21 | 1 | 1 | 541 | 46 | 587 | 0.0 | 1081 |
| Msa0089450 | MtrunA17_Chr1g0207211 | 75.322 | 543 | 132 | 1 | 1 | 541 | 40 | 582 | 0.0 | 863 |
| Msa0089450 | MtrunA17_Chr1g0207201 | 77.215 | 474 | 108 | 0 | 68 | 541 | 1 | 474 | 0.0 | 782 |
| Msa0089450 | MtrunA17_Chr1g0207231 | 74.051 | 474 | 123 | 0 | 68 | 541 | 1 | 474 | 0.0 | 765 |
| Msa0089450 | MtrunA17_Chr7g0223191 | 50.000 | 514 | 253 | 3 | 1 | 514 | 5 | 514 | 0.0 | 530 |
| Msa0089450 | MtrunA17_Chr4g0037551 | 49.119 | 511 | 256 | 3 | 4 | 514 | 37 | 543 | 2.79e-178 | 514 |
| Msa0089450 | MtrunA17_Chr5g0421191 | 47.953 | 513 | 263 | 3 | 1 | 513 | 31 | 539 | 1.34e-175 | 507 |
| Msa0089450 | MtrunA17_Chr3g0145541 | 39.958 | 478 | 270 | 7 | 69 | 539 | 90 | 557 | 3.03e-112 | 345 |
| Msa0089450 | MtrunA17_Chr3g0135341 | 29.873 | 472 | 295 | 12 | 5 | 450 | 192 | 653 | 1.56e-60 | 213 |
| Msa0089450 | MtrunA17_Chr1g0151951 | 27.641 | 568 | 361 | 15 | 5 | 539 | 380 | 930 | 2.54e-57 | 206 |
| Msa0089450 | MtrunA17_Chr4g0068081 | 48.205 | 195 | 65 | 3 | 291 | 485 | 1 | 159 | 1.57e-51 | 173 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089450 | AT4G33840.1 | 50.851 | 529 | 253 | 5 | 1 | 526 | 34 | 558 | 0.0 | 546 |
| Msa0089450 | AT4G33830.1 | 48.582 | 529 | 264 | 6 | 1 | 526 | 35 | 558 | 1.63e-174 | 505 |
| Msa0089450 | AT4G33860.1 | 50.195 | 514 | 249 | 5 | 4 | 514 | 37 | 546 | 3.81e-174 | 504 |
| Msa0089450 | AT4G33820.1 | 47.523 | 545 | 254 | 7 | 1 | 535 | 41 | 563 | 9.69e-174 | 503 |
| Msa0089450 | AT4G33810.1 | 47.514 | 543 | 256 | 7 | 1 | 535 | 1 | 522 | 7.46e-168 | 486 |
| Msa0089450 | AT4G33810.5 | 47.514 | 543 | 256 | 7 | 1 | 535 | 1 | 522 | 7.46e-168 | 486 |
| Msa0089450 | AT4G33810.2 | 47.514 | 543 | 256 | 7 | 1 | 535 | 41 | 562 | 3.37e-167 | 486 |
| Msa0089450 | AT4G33810.3 | 47.514 | 543 | 256 | 7 | 1 | 535 | 41 | 562 | 3.37e-167 | 486 |
| Msa0089450 | AT4G33810.4 | 47.514 | 543 | 256 | 7 | 1 | 535 | 41 | 562 | 3.37e-167 | 486 |
| Msa0089450 | AT2G14690.1 | 46.899 | 516 | 245 | 9 | 30 | 528 | 53 | 556 | 1.46e-161 | 472 |
| Msa0089450 | AT4G38650.1 | 40.535 | 486 | 271 | 8 | 64 | 540 | 85 | 561 | 2.54e-122 | 371 |
| Msa0089450 | AT4G38300.1 | 44.015 | 259 | 131 | 4 | 162 | 420 | 10 | 254 | 3.01e-72 | 232 |
| Msa0089450 | AT1G58370.1 | 29.661 | 472 | 291 | 12 | 9 | 450 | 366 | 826 | 1.35e-59 | 213 |
| Msa0089450 | AT1G58370.2 | 29.661 | 472 | 291 | 12 | 9 | 450 | 394 | 854 | 1.70e-59 | 213 |
| Msa0089450 | AT1G10050.2 | 28.975 | 566 | 351 | 15 | 9 | 539 | 514 | 1063 | 4.03e-59 | 212 |
| Msa0089450 | AT1G10050.1 | 28.975 | 566 | 351 | 15 | 9 | 539 | 514 | 1063 | 4.03e-59 | 212 |
| Msa0089450 | AT1G10050.3 | 28.975 | 566 | 351 | 15 | 9 | 539 | 546 | 1095 | 5.59e-59 | 212 |
| Msa0089450 | AT4G08160.1 | 30.223 | 493 | 316 | 14 | 41 | 515 | 245 | 727 | 1.15e-57 | 205 |
| Msa0089450 | AT4G08160.2 | 31.754 | 422 | 262 | 12 | 41 | 445 | 245 | 657 | 6.95e-57 | 202 |
Find 99 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAACCATTTACTAAAA+AGG | 0.196675 | 1_2:+71076824 | Msa0089450:CDS |
| ATAATCCAAGTGTGGAAATA+TGG | 0.243112 | 1_2:+71076787 | Msa0089450:CDS |
| GTAATATTGGATTTCCAATA+TGG | 0.244796 | 1_2:+71077923 | Msa0089450:CDS |
| GATAAATACTTAACCCATTC+AGG | 0.250247 | 1_2:-71077517 | None:intergenic |
| TTAGAATTTGCTAAAGATAA+TGG | 0.267266 | 1_2:+71077445 | Msa0089450:CDS |
| CTGGCTTCTGTGAGCCATAT+TGG | 0.278897 | 1_2:-71077937 | None:intergenic |
| CGCGGCTTTGCGCAATTCAT+CGG | 0.294861 | 1_2:-71077542 | None:intergenic |
| TATCCTCATAAAAGTGAAAA+TGG | 0.296065 | 1_2:-71077639 | None:intergenic |
| CCCTTTCAATGTTGTTGTCT+TGG | 0.298203 | 1_2:-71076860 | None:intergenic |
| GAATTGAATCTGTTGTTAAA+AGG | 0.302891 | 1_2:+71077572 | Msa0089450:CDS |
| CTTGTCCAGTTGGAGTAGTT+TGG | 0.315012 | 1_2:-71078224 | None:intergenic |
| GCAAATTCTAACATTGCATC+TGG | 0.318088 | 1_2:-71077433 | None:intergenic |
| CTATCTGCTTTGGCTGTATA+AGG | 0.325055 | 1_2:-71078282 | None:intergenic |
| ATAGAGGGTTGGACAGTATC+TGG | 0.325119 | 1_2:+71075969 | Msa0089450:CDS |
| TTGGCTGGCCACTTGCAAAA+TGG | 0.329470 | 1_2:-71077864 | None:intergenic |
| AGGAATCAATATACCTGATT+TGG | 0.339675 | 1_2:-71077973 | None:intergenic |
| ACAAAGGCAGATTTCCCATT+TGG | 0.372177 | 1_2:+71077271 | Msa0089450:CDS |
| CAAGGGATTATAATGTTTGC+TGG | 0.384553 | 1_2:+71078153 | Msa0089450:CDS |
| GACCTCATGTAAGCAAGATT+TGG | 0.386824 | 1_2:-71077883 | None:intergenic |
| ATGGCTCACAGAAGCCAGTT+TGG | 0.392362 | 1_2:+71077942 | Msa0089450:CDS |
| ATCTTGACACAAACCATTCC+TGG | 0.399462 | 1_2:-71077333 | None:intergenic |
| AATTCCTCTACTATCTGCTT+TGG | 0.405314 | 1_2:-71078292 | None:intergenic |
| TATAGTACAGAGAAAATTCC+AGG | 0.407018 | 1_2:+71077391 | Msa0089450:CDS |
| GCGGCTTTGCGCAATTCATC+GGG | 0.408559 | 1_2:-71077541 | None:intergenic |
| TCTGTTGTATTTAAAACAAA+TGG | 0.411591 | 1_2:+71076282 | Msa0089450:CDS |
| ATTATAATCCCTTGAACTGC+TGG | 0.416207 | 1_2:-71078144 | None:intergenic |
| GGACAATTTGATTCTTGAAT+GGG | 0.428361 | 1_2:+71078251 | Msa0089450:CDS |
| AATTTCCAAACTACTCCAAC+TGG | 0.432243 | 1_2:+71078219 | Msa0089450:CDS |
| GAACCTCAGAGAGCACAATA+TGG | 0.433972 | 1_2:+71075909 | Msa0089450:CDS |
| CTTGAGGAGATTATGCAATC+TGG | 0.434202 | 1_2:+71077802 | Msa0089450:CDS |
| TATAATACTATTGAATATAG+TGG | 0.435039 | 1_2:+71077742 | Msa0089450:CDS |
| TGGACAATTTGATTCTTGAA+TGG | 0.435532 | 1_2:+71078250 | Msa0089450:CDS |
| TACTCTCATCCAGCAGTTCA+AGG | 0.446618 | 1_2:+71078135 | Msa0089450:CDS |
| TTTGGATCCTCAGCCAAATC+AGG | 0.451900 | 1_2:+71077960 | Msa0089450:CDS |
| TTGATTCTTGAATGGGGAAG+TGG | 0.457488 | 1_2:+71078258 | Msa0089450:CDS |
| TAATCCAAGTGTGGAAATAT+GGG | 0.461783 | 1_2:+71076788 | Msa0089450:CDS |
| TTTCATTTGCATTACTTACA+TGG | 0.462597 | 1_2:-71077213 | None:intergenic |
| TGAATTTAAGTGTCAGGAAA+GGG | 0.466143 | 1_2:+71078388 | Msa0089450:CDS |
| ATTTGGCTGAGGATCCAAAC+TGG | 0.478667 | 1_2:-71077956 | None:intergenic |
| GCAGATTTCCCATTTGGATG+TGG | 0.480363 | 1_2:+71077277 | Msa0089450:CDS |
| TGGTTCATCCCACATCCAAA+TGG | 0.480525 | 1_2:-71077286 | None:intergenic |
| CAAACGGTTCAGCTAGAGAA+AGG | 0.482100 | 1_2:+71076080 | Msa0089450:CDS |
| CAGATTTCCCATTTGGATGT+GGG | 0.482548 | 1_2:+71077278 | Msa0089450:CDS |
| TCAGCCCATATTTCCACACT+TGG | 0.484189 | 1_2:-71076792 | None:intergenic |
| ATTGAGGAACGTATATCAAA+TGG | 0.491052 | 1_2:+71076002 | Msa0089450:CDS |
| GGTTGGACAGTATCTGGAAA+TGG | 0.499106 | 1_2:+71075975 | Msa0089450:CDS |
| ACCAAGACAACAACATTGAA+AGG | 0.500494 | 1_2:+71076859 | Msa0089450:CDS |
| TACTCCAACTGGACAAGTTG+TGG | 0.508753 | 1_2:+71078230 | Msa0089450:CDS |
| ACCTCGAAAAGAATCTCAGC+CGG | 0.511024 | 1_2:-71076393 | None:intergenic |
| CTGTTGAAACCAGCTTGTGC+TGG | 0.513392 | 1_2:-71078177 | None:intergenic |
| TTGAATTTAAGTGTCAGGAA+AGG | 0.514898 | 1_2:+71078387 | Msa0089450:CDS |
| AATCTTGCTTACATGAGGTC+AGG | 0.523790 | 1_2:+71077886 | Msa0089450:CDS |
| GGTTCATCCCACATCCAAAT+GGG | 0.524124 | 1_2:-71077285 | None:intergenic |
| AAAATGGCCTTGCAATCCTA+TGG | 0.528513 | 1_2:-71077848 | None:intergenic |
| GTAGATATTTCATTACATCA+TGG | 0.536564 | 1_2:+71078315 | Msa0089450:CDS |
| TTTGCTGGTCCAGCACAAGC+TGG | 0.541008 | 1_2:+71078168 | Msa0089450:CDS |
| AGGATTTGATCACAACATAG+AGG | 0.543988 | 1_2:+71075953 | Msa0089450:CDS |
| ACTGAAATGTTATTTGCCAT+AGG | 0.544070 | 1_2:+71077832 | Msa0089450:CDS |
| ATCTGGAAATGGAACAATTG+AGG | 0.546320 | 1_2:+71075986 | Msa0089450:CDS |
| CCAAGACAACAACATTGAAA+GGG | 0.549553 | 1_2:+71076860 | Msa0089450:CDS |
| CCTCGAAAAGAATCTCAGCC+GGG | 0.555600 | 1_2:-71076392 | None:intergenic |
| TTATTTGCCATAGGATTGCA+AGG | 0.558146 | 1_2:+71077841 | Msa0089450:CDS |
| CCCAGAAAATGTTATGACCT+CGG | 0.560200 | 1_2:-71077477 | None:intergenic |
| CAAACATTGACTACCAGGAA+TGG | 0.563798 | 1_2:+71077320 | Msa0089450:CDS |
| TGATTCTTGAATGGGGAAGT+GGG | 0.567685 | 1_2:+71078259 | Msa0089450:CDS |
| TTGATCACAACATAGAGGGT+TGG | 0.568919 | 1_2:+71075958 | Msa0089450:CDS |
| TCATGTAAGCAAGATTTGGC+TGG | 0.570296 | 1_2:-71077879 | None:intergenic |
| ACAAAGGAGAATTGATAGCA+TGG | 0.571786 | 1_2:+71077596 | Msa0089450:CDS |
| CTTTCACTAATGAGATGAAG+TGG | 0.573436 | 1_2:+71077368 | Msa0089450:CDS |
| CAATATACCTGATTTGGCTG+AGG | 0.579698 | 1_2:-71077967 | None:intergenic |
| CAAATTCTAACATTGCATCT+GGG | 0.582016 | 1_2:-71077432 | None:intergenic |
| AGTTGCAAACTTCTCGAGCC+CGG | 0.584837 | 1_2:+71076374 | Msa0089450:CDS |
| TTGTCCACAACTTGTCCAGT+TGG | 0.589012 | 1_2:-71078234 | None:intergenic |
| CAATGTTTGTGAGAATATGA+TGG | 0.591061 | 1_2:-71077306 | None:intergenic |
| GGATTTGATCACAACATAGA+GGG | 0.591949 | 1_2:+71075954 | Msa0089450:CDS |
| TCTGTTGTTAAAAGGTACAA+AGG | 0.592676 | 1_2:+71077580 | Msa0089450:CDS |
| GCTTGGCTTCAGTTGAGTGA+AGG | 0.592889 | 1_2:+71076246 | Msa0089450:intron |
| CCTCCATATTGTGCTCTCTG+AGG | 0.597382 | 1_2:-71075912 | None:intergenic |
| TCTCACAAACATTGACTACC+AGG | 0.597515 | 1_2:+71077315 | Msa0089450:CDS |
| GATAATGGAATTTCTGTCCG+AGG | 0.602235 | 1_2:+71077460 | Msa0089450:CDS |
| CAAAGGAGAATTGATAGCAT+GGG | 0.602744 | 1_2:+71077597 | Msa0089450:CDS |
| TAATGCAAATGAAACAGCAT+CGG | 0.605090 | 1_2:+71077222 | Msa0089450:CDS |
| CAGAGAGCACAATATGGAGG+AGG | 0.606885 | 1_2:+71075915 | Msa0089450:CDS |
| ACTCTCATCCAGCAGTTCAA+GGG | 0.613025 | 1_2:+71078136 | Msa0089450:CDS |
| ATCCATGCTTTGCTATCACA+TGG | 0.619431 | 1_2:-71076326 | None:intergenic |
| AGTTGTGATAACACAAACAA+AGG | 0.625979 | 1_2:+71077255 | Msa0089450:CDS |
| AGCCAAATCTTGCTTACATG+AGG | 0.629685 | 1_2:+71077881 | Msa0089450:CDS |
| GCAAATGAAACAGCATCGGA+AGG | 0.632167 | 1_2:+71077226 | Msa0089450:CDS |
| GGAGGCATTATAGTAAACTC+AGG | 0.632520 | 1_2:+71075933 | Msa0089450:CDS |
| GACAATTTGATTCTTGAATG+GGG | 0.637575 | 1_2:+71078252 | Msa0089450:CDS |
| GGCCATGTGATAGCAAAGCA+TGG | 0.645129 | 1_2:+71076324 | Msa0089450:CDS |
| ACAGCCAAAGCAGATAGTAG+AGG | 0.647030 | 1_2:+71078288 | Msa0089450:CDS |
| GCAGGCAGAGTACTTTGAAG+AGG | 0.651922 | 1_2:+71078098 | Msa0089450:intron |
| GAGGAACGTATATCAAATGG+TGG | 0.659694 | 1_2:+71076005 | Msa0089450:CDS |
| GCAGAGCAATAATCCAAGTG+TGG | 0.666015 | 1_2:+71076779 | Msa0089450:intron |
| TGATAGCAAAGCATGGATGT+TGG | 0.670562 | 1_2:+71076331 | Msa0089450:CDS |
| CCTCAGAGAGCACAATATGG+AGG | 0.677720 | 1_2:+71075912 | Msa0089450:CDS |
| AATGGAAGTGAACTTGTGCA+TGG | 0.692631 | 1_2:+71076300 | Msa0089450:CDS |
| GGAAGTGAACTTGTGCATGG+TGG | 0.735930 | 1_2:+71076303 | Msa0089450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTGTTACAATTTTTT+TGG | - | chr1_2:71077105-71077124 | None:intergenic | 10.0% |
| !!! | AAAATTTTACATGTACTTTT+TGG | + | chr1_2:71076647-71076666 | Msa0089450:intron | 15.0% |
| !! | TGTTATGTAACAAAAAAATT+TGG | + | chr1_2:71076730-71076749 | Msa0089450:intron | 15.0% |
| !!! | ATTTCTTTTGAGTATAAAAT+TGG | - | chr1_2:71076979-71076998 | None:intergenic | 15.0% |
| !! | AAGAAATACTAAAATTAGAA+CGG | + | chr1_2:71076992-71077011 | Msa0089450:intron | 15.0% |
| !! | TATAATACTATTGAATATAG+TGG | + | chr1_2:71077742-71077761 | Msa0089450:CDS | 15.0% |
| !!! | ATTAGATAGTTTTTCACAAA+CGG | + | chr1_2:71076064-71076083 | Msa0089450:CDS | 20.0% |
| !!! | TCTGTTGTATTTAAAACAAA+TGG | + | chr1_2:71076282-71076301 | Msa0089450:CDS | 20.0% |
| !!! | AGTCCTTATTTTTCATTTAT+AGG | + | chr1_2:71076492-71076511 | Msa0089450:intron | 20.0% |
| !!! | GTCCTTATTTTTCATTTATA+GGG | + | chr1_2:71076493-71076512 | Msa0089450:intron | 20.0% |
| !! | ATTTATAGGGACTAAATATA+GGG | + | chr1_2:71076506-71076525 | Msa0089450:intron | 20.0% |
| !!! | GGCATAAATATATTTTCAAT+CGG | - | chr1_2:71076588-71076607 | None:intergenic | 20.0% |
| !!! | TTAGAATTTGCTAAAGATAA+TGG | + | chr1_2:71077445-71077464 | Msa0089450:CDS | 20.0% |
| !!! | TTCATAAACAATGTTGTTTT+TGG | - | chr1_2:71077718-71077737 | None:intergenic | 20.0% |
| !!! | TTCTTATTTGTTATATATGC+AGG | + | chr1_2:71078080-71078099 | Msa0089450:intron | 20.0% |
| !!! | AATTCAATTTTTTGGAGTAA+TGG | - | chr1_2:71078374-71078393 | None:intergenic | 20.0% |
| !!! | GACACTTAAATTCAATTTTT+TGG | - | chr1_2:71078382-71078401 | None:intergenic | 20.0% |
| !! | AAAAATTGAATTTAAGTGTC+AGG | + | chr1_2:71078382-71078401 | Msa0089450:CDS | 20.0% |
| ! | GTCCCTATAAATGAAAAATA+AGG | - | chr1_2:71076498-71076517 | None:intergenic | 25.0% |
| ! | CATTTATAGGGACTAAATAT+AGG | + | chr1_2:71076505-71076524 | Msa0089450:intron | 25.0% |
| ! | ATAAGAATTCAGAAACAACA+AGG | - | chr1_2:71076697-71076716 | None:intergenic | 25.0% |
| ! | AACCATTTACTAAAAAGGAA+TGG | + | chr1_2:71076829-71076848 | Msa0089450:CDS | 25.0% |
| !!! | TAAAATTGGTTTGCTTACTA+TGG | - | chr1_2:71076965-71076984 | None:intergenic | 25.0% |
| !!! | ACCAGTATTGATTTGTAAAA+AGG | + | chr1_2:71077135-71077154 | Msa0089450:intron | 25.0% |
| !! | TCCTTTTTACAAATCAATAC+TGG | - | chr1_2:71077139-71077158 | None:intergenic | 25.0% |
| !! | AGTCTTGATTTATAACTTGT+AGG | + | chr1_2:71077168-71077187 | Msa0089450:intron | 25.0% |
| ! | TTTCATTTGCATTACTTACA+TGG | - | chr1_2:71077216-71077235 | None:intergenic | 25.0% |
| ! | ATGAAAAATATCAACCTGAA+TGG | + | chr1_2:71077503-71077522 | Msa0089450:CDS | 25.0% |
| ! | TGAAAAATATCAACCTGAAT+GGG | + | chr1_2:71077504-71077523 | Msa0089450:CDS | 25.0% |
| !!! | AGATTCAATTCTTTTTTTCG+CGG | - | chr1_2:71077563-71077582 | None:intergenic | 25.0% |
| ! | GAATTGAATCTGTTGTTAAA+AGG | + | chr1_2:71077572-71077591 | Msa0089450:CDS | 25.0% |
| ! | TATCCTCATAAAAGTGAAAA+TGG | - | chr1_2:71077642-71077661 | None:intergenic | 25.0% |
| !!! | TCAAGTTTTTTGAGATAGTT+GGG | - | chr1_2:71077787-71077806 | None:intergenic | 25.0% |
| !!! | CTAGATTTTCTTGGTAATAT+TGG | + | chr1_2:71077910-71077929 | Msa0089450:CDS | 25.0% |
| ! | GTAATATTGGATTTCCAATA+TGG | + | chr1_2:71077923-71077942 | Msa0089450:CDS | 25.0% |
| ! | GTAGATATTTCATTACATCA+TGG | + | chr1_2:71078315-71078334 | Msa0089450:CDS | 25.0% |
| ATTGAGGAACGTATATCAAA+TGG | + | chr1_2:71076002-71076021 | Msa0089450:CDS | 30.0% | |
| ! | TAATGATTGTGTTCTTTTGC+TGG | - | chr1_2:71076048-71076067 | None:intergenic | 30.0% |
| !!! | GGATTGATATACACTTTTTC+AGG | + | chr1_2:71076101-71076120 | Msa0089450:CDS | 30.0% |
| !! | TTTTATTTCCACATTCAGCT+TGG | + | chr1_2:71076229-71076248 | Msa0089450:intron | 30.0% |
| ! | CGGCTTAAAATTACATGTTT+TGG | - | chr1_2:71076568-71076587 | None:intergenic | 30.0% |
| TCTTGCTTCTATAAAAGAGA+AGG | - | chr1_2:71076609-71076628 | None:intergenic | 30.0% | |
| ATAATCCAAGTGTGGAAATA+TGG | + | chr1_2:71076787-71076806 | Msa0089450:CDS | 30.0% | |
| TAATCCAAGTGTGGAAATAT+GGG | + | chr1_2:71076788-71076807 | Msa0089450:CDS | 30.0% | |
| !! | CTTTTTAGTAAATGGTTGCA+AGG | - | chr1_2:71076826-71076845 | None:intergenic | 30.0% |
| CTTGCAACCATTTACTAAAA+AGG | + | chr1_2:71076824-71076843 | Msa0089450:CDS | 30.0% | |
| !! | CTCCATTCCTTTTTAGTAAA+TGG | - | chr1_2:71076834-71076853 | None:intergenic | 30.0% |
| TTTGTAATACTACCAACTTG+AGG | + | chr1_2:71076931-71076950 | Msa0089450:intron | 30.0% | |
| CATACTTCGTACAAATAACA+TGG | + | chr1_2:71077076-71077095 | Msa0089450:intron | 30.0% | |
| TAATGCAAATGAAACAGCAT+CGG | + | chr1_2:71077222-71077241 | Msa0089450:CDS | 30.0% | |
| AGTTGTGATAACACAAACAA+AGG | + | chr1_2:71077255-71077274 | Msa0089450:CDS | 30.0% | |
| CAATGTTTGTGAGAATATGA+TGG | - | chr1_2:71077309-71077328 | None:intergenic | 30.0% | |
| TATAGTACAGAGAAAATTCC+AGG | + | chr1_2:71077391-71077410 | Msa0089450:CDS | 30.0% | |
| CAAATTCTAACATTGCATCT+GGG | - | chr1_2:71077435-71077454 | None:intergenic | 30.0% | |
| GATAAATACTTAACCCATTC+AGG | - | chr1_2:71077520-71077539 | None:intergenic | 30.0% | |
| ! | TCTGTTGTTAAAAGGTACAA+AGG | + | chr1_2:71077580-71077599 | Msa0089450:CDS | 30.0% |
| !! | TGTCCATTTTCACTTTTATG+AGG | + | chr1_2:71077636-71077655 | Msa0089450:CDS | 30.0% |
| ! | CACTTTTATGAGGATAAACT+AGG | + | chr1_2:71077646-71077665 | Msa0089450:CDS | 30.0% |
| !!! | CTCAAGTTTTTTGAGATAGT+TGG | - | chr1_2:71077788-71077807 | None:intergenic | 30.0% |
| CAACTATCTCAAAAAACTTG+AGG | + | chr1_2:71077786-71077805 | Msa0089450:CDS | 30.0% | |
| ! | ACTGAAATGTTATTTGCCAT+AGG | + | chr1_2:71077832-71077851 | Msa0089450:CDS | 30.0% |
| AGGAATCAATATACCTGATT+TGG | - | chr1_2:71077976-71077995 | None:intergenic | 30.0% | |
| TGGACAATTTGATTCTTGAA+TGG | + | chr1_2:71078250-71078269 | Msa0089450:CDS | 30.0% | |
| GGACAATTTGATTCTTGAAT+GGG | + | chr1_2:71078251-71078270 | Msa0089450:CDS | 30.0% | |
| GACAATTTGATTCTTGAATG+GGG | + | chr1_2:71078252-71078271 | Msa0089450:CDS | 30.0% | |
| !!! | TTTTTGGAGTAATGGTTTGA+AGG | - | chr1_2:71078366-71078385 | None:intergenic | 30.0% |
| TTGAATTTAAGTGTCAGGAA+AGG | + | chr1_2:71078387-71078406 | Msa0089450:CDS | 30.0% | |
| TGAATTTAAGTGTCAGGAAA+GGG | + | chr1_2:71078388-71078407 | Msa0089450:CDS | 30.0% | |
| AGGATTTGATCACAACATAG+AGG | + | chr1_2:71075953-71075972 | Msa0089450:CDS | 35.0% | |
| GGATTTGATCACAACATAGA+GGG | + | chr1_2:71075954-71075973 | Msa0089450:CDS | 35.0% | |
| ATCTGGAAATGGAACAATTG+AGG | + | chr1_2:71075986-71076005 | Msa0089450:CDS | 35.0% | |
| !! | GGATGTTGGTCTCTTTTAAA+AGG | + | chr1_2:71076345-71076364 | Msa0089450:CDS | 35.0% |
| !! | TGTTGGTCTCTTTTAAAAGG+CGG | + | chr1_2:71076348-71076367 | Msa0089450:CDS | 35.0% |
| !! | GAGATTCTTTTCGAGGTTAA+CGG | + | chr1_2:71076399-71076418 | Msa0089450:intron | 35.0% |
| ! | ACCTTGTACTTTTCCTGAAT+CGG | + | chr1_2:71076670-71076689 | Msa0089450:intron | 35.0% |
| ACCAAGACAACAACATTGAA+AGG | + | chr1_2:71076859-71076878 | Msa0089450:CDS | 35.0% | |
| CCAAGACAACAACATTGAAA+GGG | + | chr1_2:71076860-71076879 | Msa0089450:CDS | 35.0% | |
| ! | ATGGATTTTGTTCCTCAAGT+TGG | - | chr1_2:71076946-71076965 | None:intergenic | 35.0% |
| TAGAACGGATAATAAAGACG+TGG | + | chr1_2:71077007-71077026 | Msa0089450:intron | 35.0% | |
| TTGTCGATGCATAAGTTTAG+TGG | - | chr1_2:71077048-71077067 | None:intergenic | 35.0% | |
| CTTTCACTAATGAGATGAAG+TGG | + | chr1_2:71077368-71077387 | Msa0089450:CDS | 35.0% | |
| GCAAATTCTAACATTGCATC+TGG | - | chr1_2:71077436-71077455 | None:intergenic | 35.0% | |
| ! | ACAAAGGAGAATTGATAGCA+TGG | + | chr1_2:71077596-71077615 | Msa0089450:CDS | 35.0% |
| ! | CAAAGGAGAATTGATAGCAT+GGG | + | chr1_2:71077597-71077616 | Msa0089450:CDS | 35.0% |
| !!! | GTTTTTTGAGATAGTTGGGT+GGG | - | chr1_2:71077783-71077802 | None:intergenic | 35.0% |
| !!! | AGTTTTTTGAGATAGTTGGG+TGG | - | chr1_2:71077784-71077803 | None:intergenic | 35.0% |
| TTATTTGCCATAGGATTGCA+AGG | + | chr1_2:71077841-71077860 | Msa0089450:CDS | 35.0% | |
| !! | TCATTTTACGTTTGAAGTCG+AGG | - | chr1_2:71077996-71078015 | None:intergenic | 35.0% |
| ATTATAATCCCTTGAACTGC+TGG | - | chr1_2:71078147-71078166 | None:intergenic | 35.0% | |
| CAAGGGATTATAATGTTTGC+TGG | + | chr1_2:71078153-71078172 | Msa0089450:CDS | 35.0% | |
| AATTTCCAAACTACTCCAAC+TGG | + | chr1_2:71078219-71078238 | Msa0089450:CDS | 35.0% | |
| AATTCCTCTACTATCTGCTT+TGG | - | chr1_2:71078295-71078314 | None:intergenic | 35.0% | |
| !! | GGAGGCATTATAGTAAACTC+AGG | + | chr1_2:71075933-71075952 | Msa0089450:CDS | 40.0% |
| TTGATCACAACATAGAGGGT+TGG | + | chr1_2:71075958-71075977 | Msa0089450:CDS | 40.0% | |
| GAGGAACGTATATCAAATGG+TGG | + | chr1_2:71076005-71076024 | Msa0089450:CDS | 40.0% | |
| AATGGAAGTGAACTTGTGCA+TGG | + | chr1_2:71076300-71076319 | Msa0089450:CDS | 40.0% | |
| ! | ATCCATGCTTTGCTATCACA+TGG | - | chr1_2:71076329-71076348 | None:intergenic | 40.0% |
| TGATAGCAAAGCATGGATGT+TGG | + | chr1_2:71076331-71076350 | Msa0089450:CDS | 40.0% | |
| ! | ACCGATTCAGGAAAAGTACA+AGG | - | chr1_2:71076674-71076693 | None:intergenic | 40.0% |
| CCCTTTCAATGTTGTTGTCT+TGG | - | chr1_2:71076863-71076882 | None:intergenic | 40.0% | |
| ACGGATAATAAAGACGTGGT+TGG | + | chr1_2:71077011-71077030 | Msa0089450:intron | 40.0% | |
| CGGATAATAAAGACGTGGTT+GGG | + | chr1_2:71077012-71077031 | Msa0089450:intron | 40.0% | |
| ACAAAGGCAGATTTCCCATT+TGG | + | chr1_2:71077271-71077290 | Msa0089450:CDS | 40.0% | |
| CAGATTTCCCATTTGGATGT+GGG | + | chr1_2:71077278-71077297 | Msa0089450:CDS | 40.0% | |
| ! | TCTCACAAACATTGACTACC+AGG | + | chr1_2:71077315-71077334 | Msa0089450:CDS | 40.0% |
| ! | CAAACATTGACTACCAGGAA+TGG | + | chr1_2:71077320-71077339 | Msa0089450:CDS | 40.0% |
| ATCTTGACACAAACCATTCC+TGG | - | chr1_2:71077336-71077355 | None:intergenic | 40.0% | |
| ! | ATAGTGTAGTTTTCTTGGCC+TGG | - | chr1_2:71077412-71077431 | None:intergenic | 40.0% |
| ! | CTGGGATAGTGTAGTTTTCT+TGG | - | chr1_2:71077417-71077436 | None:intergenic | 40.0% |
| !! | GATAATGGAATTTCTGTCCG+AGG | + | chr1_2:71077460-71077479 | Msa0089450:CDS | 40.0% |
| ! | TCCGAGGTCATAACATTTTC+TGG | + | chr1_2:71077476-71077495 | Msa0089450:CDS | 40.0% |
| CCCAGAAAATGTTATGACCT+CGG | - | chr1_2:71077480-71077499 | None:intergenic | 40.0% | |
| ! | CCGAGGTCATAACATTTTCT+GGG | + | chr1_2:71077477-71077496 | Msa0089450:CDS | 40.0% |
| CTTGAGGAGATTATGCAATC+TGG | + | chr1_2:71077802-71077821 | Msa0089450:CDS | 40.0% | |
| ! | AAAATGGCCTTGCAATCCTA+TGG | - | chr1_2:71077851-71077870 | None:intergenic | 40.0% |
| TCATGTAAGCAAGATTTGGC+TGG | - | chr1_2:71077882-71077901 | None:intergenic | 40.0% | |
| AGCCAAATCTTGCTTACATG+AGG | + | chr1_2:71077881-71077900 | Msa0089450:CDS | 40.0% | |
| GACCTCATGTAAGCAAGATT+TGG | - | chr1_2:71077886-71077905 | None:intergenic | 40.0% | |
| AATCTTGCTTACATGAGGTC+AGG | + | chr1_2:71077886-71077905 | Msa0089450:CDS | 40.0% | |
| ! | AGGTCAGGTCTAGATTTTCT+TGG | + | chr1_2:71077901-71077920 | Msa0089450:CDS | 40.0% |
| !! | CAATATACCTGATTTGGCTG+AGG | - | chr1_2:71077970-71077989 | None:intergenic | 40.0% |
| ! | ATGTTTTCGCAGTTACACGA+AGG | + | chr1_2:71078025-71078044 | Msa0089450:intron | 40.0% |
| TTGATTCTTGAATGGGGAAG+TGG | + | chr1_2:71078258-71078277 | Msa0089450:CDS | 40.0% | |
| TGATTCTTGAATGGGGAAGT+GGG | + | chr1_2:71078259-71078278 | Msa0089450:CDS | 40.0% | |
| CTATCTGCTTTGGCTGTATA+AGG | - | chr1_2:71078285-71078304 | None:intergenic | 40.0% | |
| ! | GAACCTCAGAGAGCACAATA+TGG | + | chr1_2:71075909-71075928 | Msa0089450:CDS | 45.0% |
| ATAGAGGGTTGGACAGTATC+TGG | + | chr1_2:71075969-71075988 | Msa0089450:CDS | 45.0% | |
| GGTTGGACAGTATCTGGAAA+TGG | + | chr1_2:71075975-71075994 | Msa0089450:CDS | 45.0% | |
| CAAACGGTTCAGCTAGAGAA+AGG | + | chr1_2:71076080-71076099 | Msa0089450:CDS | 45.0% | |
| AACTGAAGCCAAGCTGAATG+TGG | - | chr1_2:71076240-71076259 | None:intergenic | 45.0% | |
| ACCTCGAAAAGAATCTCAGC+CGG | - | chr1_2:71076396-71076415 | None:intergenic | 45.0% | |
| ! | GAAACAACAAGGACCGATTC+AGG | - | chr1_2:71076686-71076705 | None:intergenic | 45.0% |
| GCAGAGCAATAATCCAAGTG+TGG | + | chr1_2:71076779-71076798 | Msa0089450:intron | 45.0% | |
| TCAGCCCATATTTCCACACT+TGG | - | chr1_2:71076795-71076814 | None:intergenic | 45.0% | |
| AATAAAGACGTGGTTGGGAG+TGG | + | chr1_2:71077017-71077036 | Msa0089450:intron | 45.0% | |
| ! | GCAAATGAAACAGCATCGGA+AGG | + | chr1_2:71077226-71077245 | Msa0089450:CDS | 45.0% |
| GCAGATTTCCCATTTGGATG+TGG | + | chr1_2:71077277-71077296 | Msa0089450:CDS | 45.0% | |
| GGTTCATCCCACATCCAAAT+GGG | - | chr1_2:71077288-71077307 | None:intergenic | 45.0% | |
| TGGTTCATCCCACATCCAAA+TGG | - | chr1_2:71077289-71077308 | None:intergenic | 45.0% | |
| !! | TTGCAAGGCCATTTTGCAAG+TGG | + | chr1_2:71077856-71077875 | Msa0089450:CDS | 45.0% |
| ATTTGGCTGAGGATCCAAAC+TGG | - | chr1_2:71077959-71077978 | None:intergenic | 45.0% | |
| TTTGGATCCTCAGCCAAATC+AGG | + | chr1_2:71077960-71077979 | Msa0089450:CDS | 45.0% | |
| TACTCTCATCCAGCAGTTCA+AGG | + | chr1_2:71078135-71078154 | Msa0089450:CDS | 45.0% | |
| ACTCTCATCCAGCAGTTCAA+GGG | + | chr1_2:71078136-71078155 | Msa0089450:CDS | 45.0% | |
| CTTGTCCAGTTGGAGTAGTT+TGG | - | chr1_2:71078227-71078246 | None:intergenic | 45.0% | |
| TACTCCAACTGGACAAGTTG+TGG | + | chr1_2:71078230-71078249 | Msa0089450:CDS | 45.0% | |
| TTGTCCACAACTTGTCCAGT+TGG | - | chr1_2:71078237-71078256 | None:intergenic | 45.0% | |
| ACAGCCAAAGCAGATAGTAG+AGG | + | chr1_2:71078288-71078307 | Msa0089450:CDS | 45.0% | |
| ! | TGTCAGGAAAGGGTTTTCAC+AGG | + | chr1_2:71078398-71078417 | Msa0089450:CDS | 45.0% |
| CCTCCATATTGTGCTCTCTG+AGG | - | chr1_2:71075915-71075934 | None:intergenic | 50.0% | |
| ! | CCTCAGAGAGCACAATATGG+AGG | + | chr1_2:71075912-71075931 | Msa0089450:CDS | 50.0% |
| ! | CAGAGAGCACAATATGGAGG+AGG | + | chr1_2:71075915-71075934 | Msa0089450:CDS | 50.0% |
| GCTTGGCTTCAGTTGAGTGA+AGG | + | chr1_2:71076246-71076265 | Msa0089450:intron | 50.0% | |
| GGAAGTGAACTTGTGCATGG+TGG | + | chr1_2:71076303-71076322 | Msa0089450:CDS | 50.0% | |
| GGCCATGTGATAGCAAAGCA+TGG | + | chr1_2:71076324-71076343 | Msa0089450:CDS | 50.0% | |
| AGTTGCAAACTTCTCGAGCC+CGG | + | chr1_2:71076374-71076393 | Msa0089450:CDS | 50.0% | |
| CCTCGAAAAGAATCTCAGCC+GGG | - | chr1_2:71076395-71076414 | None:intergenic | 50.0% | |
| ! | TTGGCTGGCCACTTGCAAAA+TGG | - | chr1_2:71077867-71077886 | None:intergenic | 50.0% |
| CTGGCTTCTGTGAGCCATAT+TGG | - | chr1_2:71077940-71077959 | None:intergenic | 50.0% | |
| ATGGCTCACAGAAGCCAGTT+TGG | + | chr1_2:71077942-71077961 | Msa0089450:CDS | 50.0% | |
| ! | GCAGGCAGAGTACTTTGAAG+AGG | + | chr1_2:71078098-71078117 | Msa0089450:intron | 50.0% |
| CTGTTGAAACCAGCTTGTGC+TGG | - | chr1_2:71078180-71078199 | None:intergenic | 50.0% | |
| ! | CCCGGCTGAGATTCTTTTCG+AGG | + | chr1_2:71076392-71076411 | Msa0089450:CDS | 55.0% |
| GCGGCTTTGCGCAATTCATC+GGG | - | chr1_2:71077544-71077563 | None:intergenic | 55.0% | |
| CGCGGCTTTGCGCAATTCAT+CGG | - | chr1_2:71077545-71077564 | None:intergenic | 55.0% | |
| TTTGCTGGTCCAGCACAAGC+TGG | + | chr1_2:71078168-71078187 | Msa0089450:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71075903 | 71078449 | 71075903 | ID=Msa0089450;Name=Msa0089450 |
| chr1_2 | mRNA | 71075903 | 71078449 | 71075903 | ID=Msa0089450-mRNA-1;Parent=Msa0089450;Name=Msa0089450-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.5|0.2|1|1|1|5|0|541 |
| chr1_2 | exon | 71075903 | 71076122 | 71075903 | ID=Msa0089450-mRNA-1:exon:24445;Parent=Msa0089450-mRNA-1 |
| chr1_2 | exon | 71076247 | 71076413 | 71076247 | ID=Msa0089450-mRNA-1:exon:24446;Parent=Msa0089450-mRNA-1 |
| chr1_2 | exon | 71076783 | 71076881 | 71076783 | ID=Msa0089450-mRNA-1:exon:24447;Parent=Msa0089450-mRNA-1 |
| chr1_2 | exon | 71077190 | 71077981 | 71077190 | ID=Msa0089450-mRNA-1:exon:24448;Parent=Msa0089450-mRNA-1 |
| chr1_2 | exon | 71078102 | 71078449 | 71078102 | ID=Msa0089450-mRNA-1:exon:24449;Parent=Msa0089450-mRNA-1 |
| chr1_2 | CDS | 71075903 | 71076122 | 71075903 | ID=Msa0089450-mRNA-1:cds;Parent=Msa0089450-mRNA-1 |
| chr1_2 | CDS | 71076247 | 71076413 | 71076247 | ID=Msa0089450-mRNA-1:cds;Parent=Msa0089450-mRNA-1 |
| chr1_2 | CDS | 71076783 | 71076881 | 71076783 | ID=Msa0089450-mRNA-1:cds;Parent=Msa0089450-mRNA-1 |
| chr1_2 | CDS | 71077190 | 71077981 | 71077190 | ID=Msa0089450-mRNA-1:cds;Parent=Msa0089450-mRNA-1 |
| chr1_2 | CDS | 71078102 | 71078449 | 71078102 | ID=Msa0089450-mRNA-1:cds;Parent=Msa0089450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
