AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1344950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1344950 MtrunA17_Chr4g0057951 99.670 303 1 0 5 307 85 387 0.0 618
Msa1344950 MtrunA17_Chr8g0360961 95.673 208 8 1 16 223 2 208 3.45e-143 402
Msa1344950 MtrunA17_Chr8g0357091 83.978 181 7 3 107 287 1 159 1.39e-100 292
Msa1344950 MtrunA17_Chr8g0357081 86.325 117 3 1 1 104 1 117 7.52e-62 192
Msa1344950 MtrunA17_Chr7g0246691 24.291 247 180 3 47 291 173 414 9.49e-20 89.0
Msa1344950 MtrunA17_Chr8g0350361 27.411 197 141 2 97 291 220 416 5.11e-19 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1344950 AT4G24820.1 89.109 303 33 0 5 307 85 387 0.0 561
Msa1344950 AT4G24820.2 89.109 303 33 0 5 307 85 387 0.0 561
Msa1344950 AT3G61140.1 25.200 250 179 4 45 292 170 413 1.00e-18 86.7

Find 74 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTGGATGTTCATTAATT+TGG 0.090197 tig0007047:+15903 Msa1344950:intergenic
CAAGAAGTCTCCTTGCTTAA+TGG 0.172394 tig0007047:+16095 Msa1344950:intergenic
TTTAGCTTTGTCAATGCTTT+TGG 0.209748 tig0007047:+17179 Msa1344950:intergenic
CGATCACACGAGACAGTTTC+TGG 0.218957 tig0007047:+16061 Msa1344950:intergenic
ACATTGCAGCTTGGTTTCTT+TGG 0.250558 tig0007047:-17222 Msa1344950:CDS
GTAAAATATAAAGGTGTCAT+AGG 0.319394 tig0007047:+16915 Msa1344950:intergenic
GAAGGCGGCCACATTGTTCT+TGG 0.328664 tig0007047:-16974 Msa1344950:CDS
AAAGCATTGACAAAGCTAAA+AGG 0.352604 tig0007047:-17176 Msa1344950:intron
ATTTAGCGACCAAAGTTGTT+TGG 0.356383 tig0007047:+15721 Msa1344950:intergenic
AAGTCTTTCTTCTCAGCATT+TGG 0.381841 tig0007047:-16645 Msa1344950:intron
CTGCCCAACTGCAACAGTCT+TGG 0.384938 tig0007047:+17266 Msa1344950:intergenic
CAAAACGGTGTAAAATATAA+AGG 0.388515 tig0007047:+16906 Msa1344950:intergenic
AAGGAGACTTCTTGTTGAAC+AGG 0.394711 tig0007047:-16086 Msa1344950:CDS
TGTAAGATTGATAAAGTTGC+AGG 0.397494 tig0007047:-16168 Msa1344950:CDS
TTGGTCGCTAAATTCATCTC+AGG 0.397565 tig0007047:-15711 Msa1344950:three_prime_UTR
TAAAGAGCATTCTTAGCATC+AGG 0.401822 tig0007047:+16126 Msa1344950:intergenic
GAAGCCATGGCAAAAGCGTT+TGG 0.405490 tig0007047:-16352 Msa1344950:CDS
TCAATCACTGTCAAGATCTC+AGG 0.407014 tig0007047:+16720 Msa1344950:intergenic
GTCTCGTGTGATCGATCTTT+AGG 0.409640 tig0007047:-16052 Msa1344950:exon
CTTGTATTGACAACCATATA+AGG 0.412125 tig0007047:+16665 Msa1344950:intergenic
GCTATTTGCATCCACACTTC+CGG 0.415118 tig0007047:-16444 Msa1344950:CDS
CTCCTTGCTTAATGGTTGCT+TGG 0.422700 tig0007047:+16103 Msa1344950:intergenic
TCATTAATTTGGAAATCAAA+TGG 0.426282 tig0007047:+15914 Msa1344950:intergenic
CAGAGTTTCCTTAAAACAAA+AGG 0.442207 tig0007047:-16863 Msa1344950:intron
CCAACTTAATTTGCTCCGTC+AGG 0.445020 tig0007047:+16470 Msa1344950:intergenic
GCAGCTTGGTTTCTTTGGCA+TGG 0.461721 tig0007047:-17217 Msa1344950:CDS
TGTTTGAAGAAGGTGGTGAC+TGG 0.465631 tig0007047:-17059 Msa1344950:CDS
TGTTATTATGCTGGTCAAAA+CGG 0.481534 tig0007047:+16891 Msa1344950:intergenic
AAGAAGGTGGTGACTGGGAA+AGG 0.487909 tig0007047:-17053 Msa1344950:CDS
TACATACCTTGTCCCCAATC+CGG 0.495723 tig0007047:+17401 Msa1344950:intergenic
TGAAGTTCGTGAGGCTCACT+TGG 0.496675 tig0007047:-17443 Msa1344950:CDS
TTTCATCCGGATTGGGGACA+AGG 0.498726 tig0007047:-17407 Msa1344950:intron
TATGACAGCTTGTTTGAAGA+AGG 0.509351 tig0007047:-17069 Msa1344950:intron
GTATTCTATACATTGCAGCT+TGG 0.510078 tig0007047:-17231 Msa1344950:CDS
TGTTGCAGTTGGGCAGAAGA+TGG 0.511519 tig0007047:-17259 Msa1344950:CDS
TTTGACCAGCATAATAACAT+TGG 0.511922 tig0007047:-16887 Msa1344950:CDS
TGATCTCTCTCATGTAATAC+CGG 0.514625 tig0007047:+16425 Msa1344950:intergenic
GCGTGATTTCCAAACAACTT+TGG 0.516055 tig0007047:-15730 Msa1344950:three_prime_UTR
TCTGTCCAATGTTATTATGC+TGG 0.519046 tig0007047:+16882 Msa1344950:intergenic
GTGACTGGGAAAGGAAGAAT+AGG 0.520244 tig0007047:-17044 Msa1344950:CDS
TTGAGATGATTCGATCAGCT+TGG 0.534191 tig0007047:+15887 Msa1344950:intergenic
TGTTATCTTGAGATGCTCCA+AGG 0.535770 tig0007047:+17293 Msa1344950:intergenic
AAACCAAGACTGTTGCAGTT+GGG 0.539841 tig0007047:-17269 Msa1344950:CDS
GCTGATGCCGAGGAAAACTT+AGG 0.544982 tig0007047:-17472 Msa1344950:CDS
TAAAATATAAAGGTGTCATA+GGG 0.545376 tig0007047:+16916 Msa1344950:intergenic
CAGAGATACCGACAGTATCA+AGG 0.545935 tig0007047:-15993 Msa1344950:three_prime_UTR
GAAACCAAGACTGTTGCAGT+TGG 0.547733 tig0007047:-17270 Msa1344950:CDS
CCTGACGGAGCAAATTAAGT+TGG 0.551415 tig0007047:-16470 Msa1344950:CDS
ATAGGTAGTAAAGGTTGAGA+TGG 0.554018 tig0007047:+16948 Msa1344950:intergenic
TATGCACCAGGAGAAAGCCT+TGG 0.557453 tig0007047:-17310 Msa1344950:intron
GAGTGTGACAATTGAAGCCA+TGG 0.570854 tig0007047:-16365 Msa1344950:CDS
CTCATGTAATACCGGAAGTG+TGG 0.574056 tig0007047:+16433 Msa1344950:intergenic
ATTCATTTCAGCTGGCCTGA+CGG 0.578789 tig0007047:-16485 Msa1344950:intron
AATAGGCTGAAAGTGTATGA+AGG 0.580095 tig0007047:-17027 Msa1344950:CDS
TGGTCGCTAAATTCATCTCA+GGG 0.589330 tig0007047:-15710 Msa1344950:three_prime_UTR
TACCAAGCAACCATTAAGCA+AGG 0.592283 tig0007047:-16105 Msa1344950:CDS
GTTTGAAGAAGGTGGTGACT+GGG 0.592873 tig0007047:-17058 Msa1344950:CDS
ATTGGGTTCGCTTGCCGCTG+AGG 0.593526 tig0007047:-15752 Msa1344950:three_prime_UTR
TTCGAGTGGACATGCAGTAG+AGG 0.594533 tig0007047:+17004 Msa1344950:intergenic
GCTGCAATGTATAGAATACC+AGG 0.602890 tig0007047:+17235 Msa1344950:intergenic
CACTCGAAATTTCGAGAAGG+CGG 0.611108 tig0007047:-16989 Msa1344950:CDS
CGCCTTCTCGAAATTTCGAG+TGG 0.620270 tig0007047:+16990 Msa1344950:intergenic
ACAGATGTCCTTGATACTGT+CGG 0.642655 tig0007047:+15985 Msa1344950:intergenic
AAAGAGCATTCTTAGCATCA+GGG 0.643450 tig0007047:+16127 Msa1344950:intergenic
AAATTGTGGGCAAAGAAGAG+AGG 0.644772 tig0007047:+15685 Msa1344950:intergenic
AAAAGCGTTTGGAGTATCTG+TGG 0.655763 tig0007047:-16341 Msa1344950:CDS
GGAAGTGTGGATGCAAATAG+CGG 0.661860 tig0007047:+16446 Msa1344950:intergenic
AGGTGAGAGTGAAGTTCGTG+AGG 0.662611 tig0007047:-17452 Msa1344950:CDS
GTCCACTCGAAATTTCGAGA+AGG 0.663292 tig0007047:-16992 Msa1344950:CDS
AGTTGGGCAGAAGATGGACC+TGG 0.674047 tig0007047:-17253 Msa1344950:CDS
GACAGCTTGTTTGAAGAAGG+TGG 0.675197 tig0007047:-17066 Msa1344950:intron
GTTTGGAAATCACGCCTCAG+CGG 0.693137 tig0007047:+15738 Msa1344940:intergenic
GAGCATTCTTAGCATCAGGG+CGG 0.753729 tig0007047:+16130 Msa1344940:intergenic
GATGGAATCCAAGAACAATG+TGG 0.760047 tig0007047:+16966 Msa1344940:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCAAATTATTTTTTTGAA+CGG - tig0007047:17344-17363 Msa1344950:intron 10.0%
!!! TTTCAAATTATTTTTTTGAA+CGG - tig0007047:17344-17363 Msa1344950:intron 10.0%
!!! TATAATTTTCTGTTAAGAAT+GGG - tig0007047:16092-16111 Msa1344950:CDS 15.0%
!!! TACACTTTTTAAACATAAAA+TGG + tig0007047:17178-17197 Msa1344950:intergenic 15.0%
!!! TATAATTTTCTGTTAAGAAT+GGG - tig0007047:16092-16111 Msa1344950:CDS 15.0%
!!! TACACTTTTTAAACATAAAA+TGG + tig0007047:17178-17197 Msa1344950:intergenic 15.0%
!! TTAACAGAAAATTATAGCAA+AGG + tig0007047:16088-16107 Msa1344950:intergenic 20.0%
!!! CTATAATTTTCTGTTAAGAA+TGG - tig0007047:16091-16110 Msa1344950:CDS 20.0%
!!! TAAAATATAAAGGTGTCATA+GGG + tig0007047:16291-16310 Msa1344950:intergenic 20.0%
!! ATTACATATATTTGTTTCCA+GGG - tig0007047:16978-16997 Msa1344950:CDS 20.0%
!!! TCATTAATTTGGAAATCAAA+TGG + tig0007047:17293-17312 Msa1344950:intergenic 20.0%
!! TTAACAGAAAATTATAGCAA+AGG + tig0007047:16088-16107 Msa1344950:intergenic 20.0%
!!! CTATAATTTTCTGTTAAGAA+TGG - tig0007047:16091-16110 Msa1344950:CDS 20.0%
!!! TAAAATATAAAGGTGTCATA+GGG + tig0007047:16291-16310 Msa1344950:intergenic 20.0%
!! ATTACATATATTTGTTTCCA+GGG - tig0007047:16978-16997 Msa1344950:CDS 20.0%
!!! TCATTAATTTGGAAATCAAA+TGG + tig0007047:17293-17312 Msa1344950:intergenic 20.0%
!! TCATATGAATGTCTCATTTT+AGG - tig0007047:15706-15725 Msa1344950:three_prime_UTR 25.0%
!!! CAAAATCCTTATTTTTCATC+CGG - tig0007047:15784-15803 Msa1344950:three_prime_UTR 25.0%
! AAAAAGTTCATAGGTAGTAA+AGG + tig0007047:16268-16287 Msa1344950:intergenic 25.0%
!!! GTAAAATATAAAGGTGTCAT+AGG + tig0007047:16292-16311 Msa1344950:intergenic 25.0%
! CAAAACGGTGTAAAATATAA+AGG + tig0007047:16301-16320 Msa1344950:intergenic 25.0%
!!! TAGAAGTACCTTTTGTTTTA+AGG + tig0007047:16352-16371 Msa1344950:intergenic 25.0%
! AGAAAAGATAAATGGTGTAA+AGG + tig0007047:16392-16411 Msa1344950:intergenic 25.0%
! CGGTTAAAAGAAAAGATAAA+TGG + tig0007047:16400-16419 Msa1344950:intergenic 25.0%
!!! ATTTTGAAATTCATTTCAGC+TGG - tig0007047:16711-16730 Msa1344950:CDS 25.0%
! TTGATTAGATTACAATGTTG+TGG - tig0007047:16945-16964 Msa1344950:CDS 25.0%
! TGATTAGATTACAATGTTGT+GGG - tig0007047:16946-16965 Msa1344950:CDS 25.0%
! CATTACATATATTTGTTTCC+AGG - tig0007047:16977-16996 Msa1344950:CDS 25.0%
!! AAAAAGTGTATTGCATTGAA+AGG - tig0007047:17188-17207 Msa1344950:CDS 25.0%
!!! TGTCGTTTTTGTTTTATCAT+TGG - tig0007047:17434-17453 Msa1344950:CDS 25.0%
!!! GTCGTTTTTGTTTTATCATT+GGG - tig0007047:17435-17454 Msa1344950:CDS 25.0%
!! TCATATGAATGTCTCATTTT+AGG - tig0007047:15706-15725 Msa1344950:three_prime_UTR 25.0%
!!! CAAAATCCTTATTTTTCATC+CGG - tig0007047:15784-15803 Msa1344950:three_prime_UTR 25.0%
! AAAAAGTTCATAGGTAGTAA+AGG + tig0007047:16268-16287 Msa1344950:intergenic 25.0%
!!! GTAAAATATAAAGGTGTCAT+AGG + tig0007047:16292-16311 Msa1344950:intergenic 25.0%
! CAAAACGGTGTAAAATATAA+AGG + tig0007047:16301-16320 Msa1344950:intergenic 25.0%
!!! TAGAAGTACCTTTTGTTTTA+AGG + tig0007047:16352-16371 Msa1344950:intergenic 25.0%
! AGAAAAGATAAATGGTGTAA+AGG + tig0007047:16392-16411 Msa1344950:intergenic 25.0%
! CGGTTAAAAGAAAAGATAAA+TGG + tig0007047:16400-16419 Msa1344950:intergenic 25.0%
!!! ATTTTGAAATTCATTTCAGC+TGG - tig0007047:16711-16730 Msa1344950:CDS 25.0%
! TTGATTAGATTACAATGTTG+TGG - tig0007047:16945-16964 Msa1344950:CDS 25.0%
! TGATTAGATTACAATGTTGT+GGG - tig0007047:16946-16965 Msa1344950:CDS 25.0%
! CATTACATATATTTGTTTCC+AGG - tig0007047:16977-16996 Msa1344950:CDS 25.0%
!! AAAAAGTGTATTGCATTGAA+AGG - tig0007047:17188-17207 Msa1344950:CDS 25.0%
!!! TGTCGTTTTTGTTTTATCAT+TGG - tig0007047:17434-17453 Msa1344950:CDS 25.0%
!!! GTCGTTTTTGTTTTATCATT+GGG - tig0007047:17435-17454 Msa1344950:CDS 25.0%
!!! TTTAGCTTTGTCAATGCTTT+TGG + tig0007047:16028-16047 Msa1344950:intergenic 30.0%
!! AAAGCATTGACAAAGCTAAA+AGG - tig0007047:16028-16047 Msa1344950:three_prime_UTR 30.0%
TGTTATTATGCTGGTCAAAA+CGG + tig0007047:16316-16335 Msa1344950:intergenic 30.0%
TTTGACCAGCATAATAACAT+TGG - tig0007047:16317-16336 Msa1344950:intron 30.0%
CAGAGTTTCCTTAAAACAAA+AGG - tig0007047:16341-16360 Msa1344950:CDS 30.0%
! TAACTAGACTAATTTGCATC+AGG - tig0007047:16450-16469 Msa1344950:CDS 30.0%
! TCCACATCTTAAAGAGTTTT+TGG - tig0007047:16513-16532 Msa1344950:intron 30.0%
!! TCCAAAAACTCTTTAAGATG+TGG + tig0007047:16517-16536 Msa1344950:intergenic 30.0%
! CTTGTATTGACAACCATATA+AGG + tig0007047:16542-16561 Msa1344950:intergenic 30.0%
GAACATAGAAGCAAAAAGAT+AGG + tig0007047:16678-16697 Msa1344950:intergenic 30.0%
!! TGTCATTTATTCCCAGTTTT+TGG - tig0007047:16806-16825 Msa1344950:intron 30.0%
CTTGTAAGATTCCAAAAACT+GGG + tig0007047:16820-16839 Msa1344950:intergenic 30.0%
TCTTGTAAGATTCCAAAAAC+TGG + tig0007047:16821-16840 Msa1344950:intergenic 30.0%
AACGAAAAACCAAGTGATTT+GGG + tig0007047:16916-16935 Msa1344950:intergenic 30.0%
AAACGAAAAACCAAGTGATT+TGG + tig0007047:16917-16936 Msa1344950:intergenic 30.0%
TGTAAGATTGATAAAGTTGC+AGG - tig0007047:17036-17055 Msa1344950:CDS 30.0%
! TCTGTTGAATGCATTTTACT+AGG - tig0007047:17237-17256 Msa1344950:CDS 30.0%
! TTGAATGCATTTTACTAGGT+GGG - tig0007047:17241-17260 Msa1344950:CDS 30.0%
AGCTTGGATGTTCATTAATT+TGG + tig0007047:17304-17323 Msa1344950:intergenic 30.0%
!!! TTTAGCTTTGTCAATGCTTT+TGG + tig0007047:16028-16047 Msa1344950:intergenic 30.0%
!! AAAGCATTGACAAAGCTAAA+AGG - tig0007047:16028-16047 Msa1344950:three_prime_UTR 30.0%
TGTTATTATGCTGGTCAAAA+CGG + tig0007047:16316-16335 Msa1344950:intergenic 30.0%
TTTGACCAGCATAATAACAT+TGG - tig0007047:16317-16336 Msa1344950:intron 30.0%
CAGAGTTTCCTTAAAACAAA+AGG - tig0007047:16341-16360 Msa1344950:CDS 30.0%
! TAACTAGACTAATTTGCATC+AGG - tig0007047:16450-16469 Msa1344950:CDS 30.0%
! TCCACATCTTAAAGAGTTTT+TGG - tig0007047:16513-16532 Msa1344950:intron 30.0%
!! TCCAAAAACTCTTTAAGATG+TGG + tig0007047:16517-16536 Msa1344950:intergenic 30.0%
! CTTGTATTGACAACCATATA+AGG + tig0007047:16542-16561 Msa1344950:intergenic 30.0%
GAACATAGAAGCAAAAAGAT+AGG + tig0007047:16678-16697 Msa1344950:intergenic 30.0%
!! TGTCATTTATTCCCAGTTTT+TGG - tig0007047:16806-16825 Msa1344950:intron 30.0%
CTTGTAAGATTCCAAAAACT+GGG + tig0007047:16820-16839 Msa1344950:intergenic 30.0%
TCTTGTAAGATTCCAAAAAC+TGG + tig0007047:16821-16840 Msa1344950:intergenic 30.0%
AACGAAAAACCAAGTGATTT+GGG + tig0007047:16916-16935 Msa1344950:intergenic 30.0%
AAACGAAAAACCAAGTGATT+TGG + tig0007047:16917-16936 Msa1344950:intergenic 30.0%
TGTAAGATTGATAAAGTTGC+AGG - tig0007047:17036-17055 Msa1344950:CDS 30.0%
! TCTGTTGAATGCATTTTACT+AGG - tig0007047:17237-17256 Msa1344950:CDS 30.0%
! TTGAATGCATTTTACTAGGT+GGG - tig0007047:17241-17260 Msa1344950:CDS 30.0%
AGCTTGGATGTTCATTAATT+TGG + tig0007047:17304-17323 Msa1344950:intergenic 30.0%
!!! TCCTTATTTTTCATCCGGAT+TGG - tig0007047:15789-15808 Msa1344950:three_prime_UTR 35.0%
!!! CCTTATTTTTCATCCGGATT+GGG - tig0007047:15790-15809 Msa1344950:three_prime_UTR 35.0%
!! CTTATTTTTCATCCGGATTG+GGG - tig0007047:15791-15810 Msa1344950:three_prime_UTR 35.0%
GTATTCTATACATTGCAGCT+TGG - tig0007047:15973-15992 Msa1344950:three_prime_UTR 35.0%
TCTTCAAACAAGCTGTCATA+TGG + tig0007047:16135-16154 Msa1344950:intergenic 35.0%
! TATGACAGCTTGTTTGAAGA+AGG - tig0007047:16135-16154 Msa1344950:CDS 35.0%
! AATAGGCTGAAAGTGTATGA+AGG - tig0007047:16177-16196 Msa1344950:CDS 35.0%
ATAGGTAGTAAAGGTTGAGA+TGG + tig0007047:16259-16278 Msa1344950:intergenic 35.0%
GTCATAGGGAAAAAGTTCAT+AGG + tig0007047:16277-16296 Msa1344950:intergenic 35.0%
TCTGTCCAATGTTATTATGC+TGG + tig0007047:16325-16344 Msa1344950:intergenic 35.0%
!! ACCGTTGTTCTGTTATTTCT+TGG - tig0007047:16416-16435 Msa1344950:CDS 35.0%
GCCAAGAAATAACAGAACAA+CGG + tig0007047:16420-16439 Msa1344950:intergenic 35.0%
!! GAGTTTTTGGACTCCTTATA+TGG - tig0007047:16526-16545 Msa1344950:intron 35.0%
AAGTCTTTCTTCTCAGCATT+TGG - tig0007047:16559-16578 Msa1344950:intron 35.0%
TGATCTCTCTCATGTAATAC+CGG + tig0007047:16782-16801 Msa1344950:intergenic 35.0%
TTAGATTACAATGTTGTGGG+AGG - tig0007047:16949-16968 Msa1344950:CDS 35.0%
!! TATCACGTTTTATTGCAGCT+GGG - tig0007047:17004-17023 Msa1344950:CDS 35.0%
!! AAAGAGCATTCTTAGCATCA+GGG + tig0007047:17080-17099 Msa1344950:intergenic 35.0%
!! TAAAGAGCATTCTTAGCATC+AGG + tig0007047:17081-17100 Msa1344950:intergenic 35.0%
! GTTGAATGCATTTTACTAGG+TGG - tig0007047:17240-17259 Msa1344950:CDS 35.0%
! TGAATGCATTTTACTAGGTG+GGG - tig0007047:17242-17261 Msa1344950:CDS 35.0%
ATTTAGCGACCAAAGTTGTT+TGG + tig0007047:17486-17505 Msa1344950:intergenic 35.0%
!!! TCCTTATTTTTCATCCGGAT+TGG - tig0007047:15789-15808 Msa1344950:three_prime_UTR 35.0%
!!! CCTTATTTTTCATCCGGATT+GGG - tig0007047:15790-15809 Msa1344950:three_prime_UTR 35.0%
!! CTTATTTTTCATCCGGATTG+GGG - tig0007047:15791-15810 Msa1344950:three_prime_UTR 35.0%
GTATTCTATACATTGCAGCT+TGG - tig0007047:15973-15992 Msa1344950:three_prime_UTR 35.0%
TCTTCAAACAAGCTGTCATA+TGG + tig0007047:16135-16154 Msa1344950:intergenic 35.0%
! TATGACAGCTTGTTTGAAGA+AGG - tig0007047:16135-16154 Msa1344950:CDS 35.0%
! AATAGGCTGAAAGTGTATGA+AGG - tig0007047:16177-16196 Msa1344950:CDS 35.0%
ATAGGTAGTAAAGGTTGAGA+TGG + tig0007047:16259-16278 Msa1344950:intergenic 35.0%
GTCATAGGGAAAAAGTTCAT+AGG + tig0007047:16277-16296 Msa1344950:intergenic 35.0%
TCTGTCCAATGTTATTATGC+TGG + tig0007047:16325-16344 Msa1344950:intergenic 35.0%
!! ACCGTTGTTCTGTTATTTCT+TGG - tig0007047:16416-16435 Msa1344950:CDS 35.0%
GCCAAGAAATAACAGAACAA+CGG + tig0007047:16420-16439 Msa1344950:intergenic 35.0%
!! GAGTTTTTGGACTCCTTATA+TGG - tig0007047:16526-16545 Msa1344950:intron 35.0%
AAGTCTTTCTTCTCAGCATT+TGG - tig0007047:16559-16578 Msa1344950:intron 35.0%
TGATCTCTCTCATGTAATAC+CGG + tig0007047:16782-16801 Msa1344950:intergenic 35.0%
TTAGATTACAATGTTGTGGG+AGG - tig0007047:16949-16968 Msa1344950:CDS 35.0%
!! TATCACGTTTTATTGCAGCT+GGG - tig0007047:17004-17023 Msa1344950:CDS 35.0%
!! AAAGAGCATTCTTAGCATCA+GGG + tig0007047:17080-17099 Msa1344950:intergenic 35.0%
!! TAAAGAGCATTCTTAGCATC+AGG + tig0007047:17081-17100 Msa1344950:intergenic 35.0%
! GTTGAATGCATTTTACTAGG+TGG - tig0007047:17240-17259 Msa1344950:CDS 35.0%
! TGAATGCATTTTACTAGGTG+GGG - tig0007047:17242-17261 Msa1344950:CDS 35.0%
ATTTAGCGACCAAAGTTGTT+TGG + tig0007047:17486-17505 Msa1344950:intergenic 35.0%
! ACTCTCACCTAAGTTTTCCT+CGG + tig0007047:15742-15761 Msa1344950:intergenic 40.0%
CCCAATCCGGATGAAAAATA+AGG + tig0007047:15793-15812 Msa1344950:intergenic 40.0%
TGTTATCTTGAGATGCTCCA+AGG + tig0007047:15914-15933 Msa1344950:intergenic 40.0%
AAACCAAGACTGTTGCAGTT+GGG - tig0007047:15935-15954 Msa1344950:three_prime_UTR 40.0%
GCTGCAATGTATAGAATACC+AGG + tig0007047:15972-15991 Msa1344950:intergenic 40.0%
ACATTGCAGCTTGGTTTCTT+TGG - tig0007047:15982-16001 Msa1344950:three_prime_UTR 40.0%
GATGGAATCCAAGAACAATG+TGG + tig0007047:16241-16260 Msa1344950:intergenic 40.0%
! GACTAATTTGCATCAGGTAG+TGG - tig0007047:16456-16475 Msa1344950:CDS 40.0%
TCAATCACTGTCAAGATCTC+AGG + tig0007047:16487-16506 Msa1344950:intergenic 40.0%
!! AAAAGCGTTTGGAGTATCTG+TGG - tig0007047:16863-16882 Msa1344950:intron 40.0%
TGAATGCATCCCAAATCACT+TGG - tig0007047:16904-16923 Msa1344950:CDS 40.0%
AATAAAACGTGATAGCTCCC+TGG + tig0007047:16998-17017 Msa1344950:intergenic 40.0%
!! CTATCACGTTTTATTGCAGC+TGG - tig0007047:17003-17022 Msa1344950:CDS 40.0%
TACCAAGCAACCATTAAGCA+AGG - tig0007047:17099-17118 Msa1344950:intron 40.0%
CAAGAAGTCTCCTTGCTTAA+TGG + tig0007047:17112-17131 Msa1344950:intergenic 40.0%
AAGGAGACTTCTTGTTGAAC+AGG - tig0007047:17118-17137 Msa1344950:intron 40.0%
ACAGATGTCCTTGATACTGT+CGG + tig0007047:17222-17241 Msa1344950:intergenic 40.0%
! GAATGCATTTTACTAGGTGG+GGG - tig0007047:17243-17262 Msa1344950:CDS 40.0%
TTGAGATGATTCGATCAGCT+TGG + tig0007047:17320-17339 Msa1344950:intergenic 40.0%
GCGTGATTTCCAAACAACTT+TGG - tig0007047:17474-17493 Msa1344950:CDS 40.0%
TTGGTCGCTAAATTCATCTC+AGG - tig0007047:17493-17512 Msa1344950:CDS 40.0%
TGGTCGCTAAATTCATCTCA+GGG - tig0007047:17494-17513 Msa1344950:exon 40.0%
! ACTCTCACCTAAGTTTTCCT+CGG + tig0007047:15742-15761 Msa1344950:intergenic 40.0%
CCCAATCCGGATGAAAAATA+AGG + tig0007047:15793-15812 Msa1344950:intergenic 40.0%
TGTTATCTTGAGATGCTCCA+AGG + tig0007047:15914-15933 Msa1344950:intergenic 40.0%
AAACCAAGACTGTTGCAGTT+GGG - tig0007047:15935-15954 Msa1344950:three_prime_UTR 40.0%
GCTGCAATGTATAGAATACC+AGG + tig0007047:15972-15991 Msa1344950:intergenic 40.0%
ACATTGCAGCTTGGTTTCTT+TGG - tig0007047:15982-16001 Msa1344950:three_prime_UTR 40.0%
GATGGAATCCAAGAACAATG+TGG + tig0007047:16241-16260 Msa1344950:intergenic 40.0%
! GACTAATTTGCATCAGGTAG+TGG - tig0007047:16456-16475 Msa1344950:CDS 40.0%
TCAATCACTGTCAAGATCTC+AGG + tig0007047:16487-16506 Msa1344950:intergenic 40.0%
!! AAAAGCGTTTGGAGTATCTG+TGG - tig0007047:16863-16882 Msa1344950:intron 40.0%
TGAATGCATCCCAAATCACT+TGG - tig0007047:16904-16923 Msa1344950:CDS 40.0%
AATAAAACGTGATAGCTCCC+TGG + tig0007047:16998-17017 Msa1344950:intergenic 40.0%
!! CTATCACGTTTTATTGCAGC+TGG - tig0007047:17003-17022 Msa1344950:CDS 40.0%
TACCAAGCAACCATTAAGCA+AGG - tig0007047:17099-17118 Msa1344950:intron 40.0%
CAAGAAGTCTCCTTGCTTAA+TGG + tig0007047:17112-17131 Msa1344950:intergenic 40.0%
AAGGAGACTTCTTGTTGAAC+AGG - tig0007047:17118-17137 Msa1344950:intron 40.0%
ACAGATGTCCTTGATACTGT+CGG + tig0007047:17222-17241 Msa1344950:intergenic 40.0%
! GAATGCATTTTACTAGGTGG+GGG - tig0007047:17243-17262 Msa1344950:CDS 40.0%
TTGAGATGATTCGATCAGCT+TGG + tig0007047:17320-17339 Msa1344950:intergenic 40.0%
GCGTGATTTCCAAACAACTT+TGG - tig0007047:17474-17493 Msa1344950:CDS 40.0%
TTGGTCGCTAAATTCATCTC+AGG - tig0007047:17493-17512 Msa1344950:CDS 40.0%
TGGTCGCTAAATTCATCTCA+GGG - tig0007047:17494-17513 Msa1344950:exon 40.0%
!!! TTTTAGGATTGCTGATGCCG+AGG - tig0007047:15722-15741 Msa1344950:three_prime_UTR 45.0%
TACATACCTTGTCCCCAATC+CGG + tig0007047:15806-15825 Msa1344950:intergenic 45.0%
! TTCCTTTTCCTTTCTGCTGC+TGG - tig0007047:15850-15869 Msa1344950:three_prime_UTR 45.0%
TTCCAGCAGCAGAAAGGAAA+AGG + tig0007047:15855-15874 Msa1344950:intergenic 45.0%
ACTTGATTCCAGCAGCAGAA+AGG + tig0007047:15861-15880 Msa1344950:intergenic 45.0%
GAAACCAAGACTGTTGCAGT+TGG - tig0007047:15934-15953 Msa1344950:three_prime_UTR 45.0%
! GACAGCTTGTTTGAAGAAGG+TGG - tig0007047:16138-16157 Msa1344950:CDS 45.0%
TGTTTGAAGAAGGTGGTGAC+TGG - tig0007047:16145-16164 Msa1344950:CDS 45.0%
GTTTGAAGAAGGTGGTGACT+GGG - tig0007047:16146-16165 Msa1344950:CDS 45.0%
GTGACTGGGAAAGGAAGAAT+AGG - tig0007047:16160-16179 Msa1344950:CDS 45.0%
GTCCACTCGAAATTTCGAGA+AGG - tig0007047:16212-16231 Msa1344950:intron 45.0%
CACTCGAAATTTCGAGAAGG+CGG - tig0007047:16215-16234 Msa1344950:intron 45.0%
! ATTCATTTCAGCTGGCCTGA+CGG - tig0007047:16719-16738 Msa1344950:CDS 45.0%
!! CCAACTTAATTTGCTCCGTC+AGG + tig0007047:16737-16756 Msa1344950:intergenic 45.0%
CCTGACGGAGCAAATTAAGT+TGG - tig0007047:16734-16753 Msa1344950:CDS 45.0%
! GGAAGTGTGGATGCAAATAG+CGG + tig0007047:16761-16780 Msa1344950:intergenic 45.0%
GCTATTTGCATCCACACTTC+CGG - tig0007047:16760-16779 Msa1344950:intron 45.0%
CTCATGTAATACCGGAAGTG+TGG + tig0007047:16774-16793 Msa1344950:intergenic 45.0%
GAGTGTGACAATTGAAGCCA+TGG - tig0007047:16839-16858 Msa1344950:intron 45.0%
! TACTCCAAACGCTTTTGCCA+TGG + tig0007047:16859-16878 Msa1344950:intergenic 45.0%
CTCCTTGCTTAATGGTTGCT+TGG + tig0007047:17104-17123 Msa1344950:intergenic 45.0%
GTCTCGTGTGATCGATCTTT+AGG - tig0007047:17152-17171 Msa1344950:intron 45.0%
CAGAGATACCGACAGTATCA+AGG - tig0007047:17211-17230 Msa1344950:CDS 45.0%
! TTTTACTAGGTGGGGGAATG+AGG - tig0007047:17250-17269 Msa1344950:CDS 45.0%
!!! TTTTAGGATTGCTGATGCCG+AGG - tig0007047:15722-15741 Msa1344950:three_prime_UTR 45.0%
TACATACCTTGTCCCCAATC+CGG + tig0007047:15806-15825 Msa1344950:intergenic 45.0%
! TTCCTTTTCCTTTCTGCTGC+TGG - tig0007047:15850-15869 Msa1344950:three_prime_UTR 45.0%
TTCCAGCAGCAGAAAGGAAA+AGG + tig0007047:15855-15874 Msa1344950:intergenic 45.0%
ACTTGATTCCAGCAGCAGAA+AGG + tig0007047:15861-15880 Msa1344950:intergenic 45.0%
GAAACCAAGACTGTTGCAGT+TGG - tig0007047:15934-15953 Msa1344950:three_prime_UTR 45.0%
! GACAGCTTGTTTGAAGAAGG+TGG - tig0007047:16138-16157 Msa1344950:CDS 45.0%
TGTTTGAAGAAGGTGGTGAC+TGG - tig0007047:16145-16164 Msa1344950:CDS 45.0%
GTTTGAAGAAGGTGGTGACT+GGG - tig0007047:16146-16165 Msa1344950:CDS 45.0%
GTGACTGGGAAAGGAAGAAT+AGG - tig0007047:16160-16179 Msa1344950:CDS 45.0%
GTCCACTCGAAATTTCGAGA+AGG - tig0007047:16212-16231 Msa1344950:intron 45.0%
CACTCGAAATTTCGAGAAGG+CGG - tig0007047:16215-16234 Msa1344950:intron 45.0%
! ATTCATTTCAGCTGGCCTGA+CGG - tig0007047:16719-16738 Msa1344950:CDS 45.0%
!! CCAACTTAATTTGCTCCGTC+AGG + tig0007047:16737-16756 Msa1344950:intergenic 45.0%
CCTGACGGAGCAAATTAAGT+TGG - tig0007047:16734-16753 Msa1344950:CDS 45.0%
! GGAAGTGTGGATGCAAATAG+CGG + tig0007047:16761-16780 Msa1344950:intergenic 45.0%
GCTATTTGCATCCACACTTC+CGG - tig0007047:16760-16779 Msa1344950:intron 45.0%
CTCATGTAATACCGGAAGTG+TGG + tig0007047:16774-16793 Msa1344950:intergenic 45.0%
GAGTGTGACAATTGAAGCCA+TGG - tig0007047:16839-16858 Msa1344950:intron 45.0%
! TACTCCAAACGCTTTTGCCA+TGG + tig0007047:16859-16878 Msa1344950:intergenic 45.0%
CTCCTTGCTTAATGGTTGCT+TGG + tig0007047:17104-17123 Msa1344950:intergenic 45.0%
GTCTCGTGTGATCGATCTTT+AGG - tig0007047:17152-17171 Msa1344950:intron 45.0%
CAGAGATACCGACAGTATCA+AGG - tig0007047:17211-17230 Msa1344950:CDS 45.0%
! TTTTACTAGGTGGGGGAATG+AGG - tig0007047:17250-17269 Msa1344950:CDS 45.0%
GCTGATGCCGAGGAAAACTT+AGG - tig0007047:15732-15751 Msa1344950:three_prime_UTR 50.0%
AGGTGAGAGTGAAGTTCGTG+AGG - tig0007047:15752-15771 Msa1344950:three_prime_UTR 50.0%
TGAAGTTCGTGAGGCTCACT+TGG - tig0007047:15761-15780 Msa1344950:three_prime_UTR 50.0%
! TTTCATCCGGATTGGGGACA+AGG - tig0007047:15797-15816 Msa1344950:three_prime_UTR 50.0%
AACACTGTCCTCTATGCACC+AGG - tig0007047:15882-15901 Msa1344950:three_prime_UTR 50.0%
TATGCACCAGGAGAAAGCCT+TGG - tig0007047:15894-15913 Msa1344950:three_prime_UTR 50.0%
TGTTGCAGTTGGGCAGAAGA+TGG - tig0007047:15945-15964 Msa1344950:three_prime_UTR 50.0%
GCAGCTTGGTTTCTTTGGCA+TGG - tig0007047:15987-16006 Msa1344950:three_prime_UTR 50.0%
AAGAAGGTGGTGACTGGGAA+AGG - tig0007047:16151-16170 Msa1344950:CDS 50.0%
TTCGAGTGGACATGCAGTAG+AGG + tig0007047:16203-16222 Msa1344950:intergenic 50.0%
CGCCTTCTCGAAATTTCGAG+TGG + tig0007047:16217-16236 Msa1344950:intergenic 50.0%
!! GAAGCCATGGCAAAAGCGTT+TGG - tig0007047:16852-16871 Msa1344950:intron 50.0%
GAGCATTCTTAGCATCAGGG+CGG + tig0007047:17077-17096 Msa1344950:intergenic 50.0%
CGATCACACGAGACAGTTTC+TGG + tig0007047:17146-17165 Msa1344950:intergenic 50.0%
GTTTGGAAATCACGCCTCAG+CGG + tig0007047:17469-17488 Msa1344950:intergenic 50.0%
GCTGATGCCGAGGAAAACTT+AGG - tig0007047:15732-15751 Msa1344950:three_prime_UTR 50.0%
AGGTGAGAGTGAAGTTCGTG+AGG - tig0007047:15752-15771 Msa1344950:three_prime_UTR 50.0%
TGAAGTTCGTGAGGCTCACT+TGG - tig0007047:15761-15780 Msa1344950:three_prime_UTR 50.0%
! TTTCATCCGGATTGGGGACA+AGG - tig0007047:15797-15816 Msa1344950:three_prime_UTR 50.0%
AACACTGTCCTCTATGCACC+AGG - tig0007047:15882-15901 Msa1344950:three_prime_UTR 50.0%
TATGCACCAGGAGAAAGCCT+TGG - tig0007047:15894-15913 Msa1344950:three_prime_UTR 50.0%
TGTTGCAGTTGGGCAGAAGA+TGG - tig0007047:15945-15964 Msa1344950:three_prime_UTR 50.0%
GCAGCTTGGTTTCTTTGGCA+TGG - tig0007047:15987-16006 Msa1344950:three_prime_UTR 50.0%
AAGAAGGTGGTGACTGGGAA+AGG - tig0007047:16151-16170 Msa1344950:CDS 50.0%
TTCGAGTGGACATGCAGTAG+AGG + tig0007047:16203-16222 Msa1344950:intergenic 50.0%
CGCCTTCTCGAAATTTCGAG+TGG + tig0007047:16217-16236 Msa1344950:intergenic 50.0%
!! GAAGCCATGGCAAAAGCGTT+TGG - tig0007047:16852-16871 Msa1344950:intron 50.0%
GAGCATTCTTAGCATCAGGG+CGG + tig0007047:17077-17096 Msa1344950:intergenic 50.0%
CGATCACACGAGACAGTTTC+TGG + tig0007047:17146-17165 Msa1344950:intergenic 50.0%
GTTTGGAAATCACGCCTCAG+CGG + tig0007047:17469-17488 Msa1344950:intergenic 50.0%
GGCTTTCTCCTGGTGCATAG+AGG + tig0007047:15893-15912 Msa1344950:intergenic 55.0%
GATGCTCCAAGGCTTTCTCC+TGG + tig0007047:15903-15922 Msa1344950:intergenic 55.0%
CTGCCCAACTGCAACAGTCT+TGG + tig0007047:15941-15960 Msa1344950:intergenic 55.0%
AGTTGGGCAGAAGATGGACC+TGG - tig0007047:15951-15970 Msa1344950:three_prime_UTR 55.0%
GAAGGCGGCCACATTGTTCT+TGG - tig0007047:16230-16249 Msa1344950:intron 55.0%
GGCTTTCTCCTGGTGCATAG+AGG + tig0007047:15893-15912 Msa1344950:intergenic 55.0%
GATGCTCCAAGGCTTTCTCC+TGG + tig0007047:15903-15922 Msa1344950:intergenic 55.0%
CTGCCCAACTGCAACAGTCT+TGG + tig0007047:15941-15960 Msa1344950:intergenic 55.0%
AGTTGGGCAGAAGATGGACC+TGG - tig0007047:15951-15970 Msa1344950:three_prime_UTR 55.0%
GAAGGCGGCCACATTGTTCT+TGG - tig0007047:16230-16249 Msa1344950:intron 55.0%
ATTGGGTTCGCTTGCCGCTG+AGG - tig0007047:17452-17471 Msa1344950:CDS 60.0%
ATTGGGTTCGCTTGCCGCTG+AGG - tig0007047:17452-17471 Msa1344950:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0007047 gene 15694 17532 15694 ID=Msa1344950;Name=Msa1344950
tig0007047 mRNA 15694 17532 15694 ID=Msa1344950-mRNA-1;Parent=Msa1344950;Name=Msa1344950-mRNA-1;_AED=0.11;_eAED=0.11;_QI=20|1|1|1|1|1|6|359|307
tig0007047 exon 15694 16227 15694 ID=Msa1344950-mRNA-1:exon:4772;Parent=Msa1344950-mRNA-1
tig0007047 exon 16328 16496 16328 ID=Msa1344950-mRNA-1:exon:4771;Parent=Msa1344950-mRNA-1
tig0007047 exon 16646 16754 16646 ID=Msa1344950-mRNA-1:exon:4770;Parent=Msa1344950-mRNA-1
tig0007047 exon 16864 17083 16864 ID=Msa1344950-mRNA-1:exon:4769;Parent=Msa1344950-mRNA-1
tig0007047 exon 17177 17322 17177 ID=Msa1344950-mRNA-1:exon:4768;Parent=Msa1344950-mRNA-1
tig0007047 exon 17408 17532 17408 ID=Msa1344950-mRNA-1:exon:4767;Parent=Msa1344950-mRNA-1
tig0007047 five_prime_UTR 17513 17532 17513 ID=Msa1344950-mRNA-1:five_prime_utr;Parent=Msa1344950-mRNA-1
tig0007047 CDS 17408 17512 17408 ID=Msa1344950-mRNA-1:cds;Parent=Msa1344950-mRNA-1
tig0007047 CDS 17177 17322 17177 ID=Msa1344950-mRNA-1:cds;Parent=Msa1344950-mRNA-1
tig0007047 CDS 16864 17083 16864 ID=Msa1344950-mRNA-1:cds;Parent=Msa1344950-mRNA-1
tig0007047 CDS 16646 16754 16646 ID=Msa1344950-mRNA-1:cds;Parent=Msa1344950-mRNA-1
tig0007047 CDS 16328 16496 16328 ID=Msa1344950-mRNA-1:cds;Parent=Msa1344950-mRNA-1
tig0007047 CDS 16053 16227 16053 ID=Msa1344950-mRNA-1:cds;Parent=Msa1344950-mRNA-1
tig0007047 three_prime_UTR 15694 16052 15694 ID=Msa1344950-mRNA-1:three_prime_utr;Parent=Msa1344950-mRNA-1
Gene Sequence

>Msa1344950

ATGTCTCATTTTAGGATTGCTGATGCCGAGGAAAACTTAGGTGAGAGTGAAGTTCGTGAGGCTCACTTGGCAAAATCCTTATTTTTCATCCGGATTGGGGACAAGGAGAAAGCCTTGGAGCATCTCAAGATAACAGAAACCAAGACTGTTGCAGTTGGGCAGAAGATGGACCTGGTATTCTATACATTGCAGCTTGGTTTCTTTGGCATGGATTTTGATCTCATTTCCAAAAGCATTGACAAAGCTAAAAGCTTGTTTGAAGAAGGTGGTGACTGGGAAAGGAAGAATAGGCTGAAAGTGTATGAAGGCCTCTACTGCATGTCCACTCGAAATTTCGAGAAGGCGGCCACATTGTTCTTGGATTCCATCTCAACCTTTACTACCTATGAACTTTTTCCCTATGACACCTTTATATTTTACACCGTTTTGACCAGCATAATAACATTGGACAGAGTTTCCTTAAAACAAAAGGTAGTGGATGCTCCTGAGATCTTGACAGTGATTGAAAAAATTCCACATCTTAAAGAGTTTTTGGACTCCTTATATGGTTGTCAATACAAGTCTTTCTTCTCAGCATTTGCTGGCCTGACGGAGCAAATTAAGTTGGACCGCTATTTGCATCCACACTTCCGGTATTACATGAGAGAGATCAGAACTGTCATTTATTCCCAGTTTTTGGAATCTTACAAGAGTGTGACAATTGAAGCCATGGCAAAAGCGTTTGGAGTATCTGTGGATTTTATTGATGTGGAGCTATCACGTTTTATTGCAGCTGGGAAACTTCACTGTAAGATTGATAAAGTTGCAGGCGTTCTTGAAACTAACCGCCCTGATGCTAAGAATGCTCTTTACCAAGCAACCATTAAGCAAGGAGACTTCTTGTTGAACAGGATCCAGAAACTGTCTCGTGTGATCGATCTTTAG
Protein sequence

>Msa1344950

MSHFRIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKITETKTVAVGQKMDLVFYTLQLGFFGMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFEKAATLFLDSISTFTTYELFPYDTFIFYTVLTSIITLDRVSLKQKVVDAPEILTVIEKIPHLKEFLDSLYGCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREIRTVIYSQFLESYKSVTIEAMAKAFGVSVDFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL*