AlfalfaGEDB | Msa0069080

M. sativa cultivar zhongmu-4 / Msa0069080

KEGG: K01866
GO: GO:0000049 GO:0001664 GO:0002181 GO:0002682 GO:0002685 GO:0002688 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004812 GO:0004831 GO:0005102 GO:0005126 GO:0005153 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006437 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006915 GO:0006935 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009059 GO:0009605 GO:0009966 GO:0009987 GO:0010467 GO:0010469 GO:0010494 GO:0010646 GO:0010758 GO:0012501 GO:0016070 GO:0016604 GO:0016874 GO:0016875 GO:0017101 GO:0017102 GO:0019538 GO:0019752 GO:0023051 GO:0030334 GO:0030545 GO:0031974 GO:0031981 GO:0032101 GO:0032879 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034660 GO:0035770 GO:0036464 GO:0040011 GO:0040012 GO:0042056 GO:0042221 GO:0042330 GO:0042379 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045236 GO:0046483 GO:0048018 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0050918 GO:0050920 GO:0051270 GO:0051716 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905521 GO:1990904 GO:2000145
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069080	sp\|F4HWL4\|SYYC2_ARATH	53.030	66	29	1	26	91	375	438	1.41e-13	68.6
Msa0069080	sp\|F4HWL4\|SYYC2_ARATH	45.000	60	33	0	32	91	1	60	9.04e-11	60.8

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069080	A0A072VU52	100.000	71	0	0	21	91	1	71	1.67e-38	142

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003870	Msa0069080	0.804824	1.794070e-49	-8.615850e-47
Msa0069080	Msa0138890	0.812794	3.543071e-51	-8.615850e-47
Msa0069080	Msa0146420	0.804209	2.411406e-49	-8.615850e-47
Msa0069080	Msa0717380	0.809898	1.507268e-50	-8.615850e-47
Msa0069080	Msa1094380	0.814385	1.582744e-51	-8.615850e-47
Msa0069080	Msa1218170	0.800751	1.244021e-48	-8.615850e-47
Msa0069080	Msa1344950	0.832598	8.627706e-56	-8.615850e-47
Msa0069080	Msa1374240	0.814966	1.177148e-51	-8.615850e-47
Msa0069080	Msa1403910	0.803196	3.912393e-49	-8.615850e-47
Msa0069080	Msa1418770	0.801761	7.728570e-49	-8.615850e-47

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069080	MtrunA17_Chr1g0173201	100.000	71	0	0	21	91	1	71	3.22e-42	142
Msa0069080	MtrunA17_Chr1g0146461	51.765	85	30	3	12	91	361	439	2.54e-17	75.9
Msa0069080	MtrunA17_Chr1g0146461	68.000	50	16	0	42	91	10	59	5.37e-15	69.3

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0069080	AT1G28350.3	53.030	66	29	1	26	91	309	372	1.15e-14	68.9
Msa0069080	AT1G28350.1	53.030	66	29	1	26	91	375	438	1.44e-14	68.6
Msa0069080	AT1G28350.1	45.000	60	33	0	32	91	1	60	9.18e-12	60.8
Msa0069080	AT1G28350.2	53.030	66	29	1	26	91	375	438	1.44e-14	68.6
Msa0069080	AT1G28350.2	45.000	60	33	0	32	91	1	60	9.18e-12	60.8
Msa0069080	AT2G33840.1	77.143	35	8	0	57	91	40	74	1.81e-12	62.4

Showing 1 to 6 of 6 entries

Previous1Next

Find 93 sgRNAs with CRISPR-Local

Find 601 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCGGTTTAAGGTCAGC+TGG	0.544325	1_2:-36699449	None:intergenic
AAGCTTAATAACAAAATGGG+TGG	0.593404	1_2:+36697439	Msa0069080:three_prime_UTR
AATAAAGTACGGAAACTTAA+GGG	0.440315	1_2:+36700901	Msa0069080:three_prime_UTR
AATAACATCACAATACTCTC+TGG	0.528355	1_2:-36698543	None:intergenic
AATATTCTTACAGATGCCAA+AGG	0.587754	1_2:-36700821	None:intergenic
AATTACTGCGGTGTTGGATT+TGG	0.284569	1_2:-36691987	None:intergenic
AATTTGGAAAGCCGTTGGGA+TGG	0.569257	1_2:+36697504	Msa0069080:three_prime_UTR
ACAACCTTAAAAGAATTATC+AGG	0.345241	1_2:+36697626	Msa0069080:three_prime_UTR
ACAGTAAATTCGTTAAACCA+AGG	0.654744	1_2:-36699185	None:intergenic
ACATCCAGCTGACCTTAAAC+CGG	0.474408	1_2:+36699445	Msa0069080:three_prime_UTR

Showing 1 to 10 of 93 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGTCAAAACCCTAAAAA+TGG	+	chr1_2:36691890-36691909	Msa0069080:CDS	30.0%
TGTTGGATTTGGATTTGAAT+TGG	-	chr1_2:36691979-36691998	None:intergenic	30.0%
TTTGATGAATTTACGTGCAT+AGG	+	chr1_2:36692063-36692082	Msa0069080:intron	30.0%
TATCATGATAAGCTGAAAAC+AGG	-	chr1_2:36692255-36692274	None:intergenic	30.0%
ATCAACTTATTTGCAGCTTA+CGG	-	chr1_2:36692288-36692307	None:intergenic	30.0%
CAAAAAAATGGTAAACTTGC+AGG	-	chr1_2:36692613-36692632	None:intergenic	30.0%
CTCAAAAATGATATGCTTGA+AGG	-	chr1_2:36692668-36692687	None:intergenic	30.0%
TGAACAGTAGATCAAATAGA+AGG	+	chr1_2:36693203-36693222	Msa0069080:intron	30.0%
TAATCCTCAAACATTTGCTT+AGG	+	chr1_2:36693259-36693278	Msa0069080:intron	30.0%
TAAGCAAGATAAAACTCACA+GGG	-	chr1_2:36693363-36693382	None:intergenic	30.0%

Showing 1 to 10 of 601 entries

Previous1 2 3 4 5…61Next

Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	36691849	36700939	36691849	ID=Msa0069080;Name=Msa0069080
chr1_2	mRNA	36691849	36700939	36691849	ID=Msa0069080-mRNA-1;Parent=Msa0069080;Name=Msa0069080-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.88\|0.8\|1\|0.88\|0.9\|10\|1130\|113
chr1_2	exon	36691849	36692003	36691849	ID=Msa0069080-mRNA-1:exon:11673;Parent=Msa0069080-mRNA-1
chr1_2	exon	36692085	36692200	36692085	ID=Msa0069080-mRNA-1:exon:11674;Parent=Msa0069080-mRNA-1
chr1_2	exon	36697358	36697647	36697358	ID=Msa0069080-mRNA-1:exon:11675;Parent=Msa0069080-mRNA-1
chr1_2	exon	36697741	36697837	36697741	ID=Msa0069080-mRNA-1:exon:11676;Parent=Msa0069080-mRNA-1
chr1_2	exon	36698494	36698599	36698494	ID=Msa0069080-mRNA-1:exon:11677;Parent=Msa0069080-mRNA-1
chr1_2	exon	36698680	36698762	36698680	ID=Msa0069080-mRNA-1:exon:11678;Parent=Msa0069080-mRNA-1
chr1_2	exon	36699092	36699237	36699092	ID=Msa0069080-mRNA-1:exon:11679;Parent=Msa0069080-mRNA-1
chr1_2	exon	36699394	36699499	36699394	ID=Msa0069080-mRNA-1:exon:11680;Parent=Msa0069080-mRNA-1
chr1_2	exon	36700461	36700520	36700461	ID=Msa0069080-mRNA-1:exon:11681;Parent=Msa0069080-mRNA-1
chr1_2	exon	36700627	36700939	36700627	ID=Msa0069080-mRNA-1:exon:11682;Parent=Msa0069080-mRNA-1
chr1_2	CDS	36691849	36692003	36691849	ID=Msa0069080-mRNA-1:cds;Parent=Msa0069080-mRNA-1
chr1_2	CDS	36692085	36692200	36692085	ID=Msa0069080-mRNA-1:cds;Parent=Msa0069080-mRNA-1
chr1_2	CDS	36697358	36697428	36697358	ID=Msa0069080-mRNA-1:cds;Parent=Msa0069080-mRNA-1
chr1_2	three_prime_UTR	36697429	36697647	36697429	ID=Msa0069080-mRNA-1:three_prime_utr;Parent=Msa0069080-mRNA-1
chr1_2	three_prime_UTR	36697741	36697837	36697741	ID=Msa0069080-mRNA-1:three_prime_utr;Parent=Msa0069080-mRNA-1
chr1_2	three_prime_UTR	36698494	36698599	36698494	ID=Msa0069080-mRNA-1:three_prime_utr;Parent=Msa0069080-mRNA-1
chr1_2	three_prime_UTR	36698680	36698762	36698680	ID=Msa0069080-mRNA-1:three_prime_utr;Parent=Msa0069080-mRNA-1
chr1_2	three_prime_UTR	36699092	36699237	36699092	ID=Msa0069080-mRNA-1:three_prime_utr;Parent=Msa0069080-mRNA-1
chr1_2	three_prime_UTR	36699394	36699499	36699394	ID=Msa0069080-mRNA-1:three_prime_utr;Parent=Msa0069080-mRNA-1
chr1_2	three_prime_UTR	36700461	36700520	36700461	ID=Msa0069080-mRNA-1:three_prime_utr;Parent=Msa0069080-mRNA-1
chr1_2	three_prime_UTR	36700627	36700939	36700627	ID=Msa0069080-mRNA-1:three_prime_utr;Parent=Msa0069080-mRNA-1

Gene Sequence	>Msa0069080 AAGATTGAAATTCCGACCGACGCTGGCATTGCGATAGTGTTGAAAGTCAAAACCCTAAAAATGGCAGAAGAAGCAGTAGCCGCCGCAGTAGCACTGGAATCATTGTCCGTCGCTGAATCATCATCAACCAATTCAAATCCAAATCCAACACCGCAGTTGTTGAGTGCGGAACAGAGATTTGAGATCGTGAGAAGCATCGGAGAAGAGTGCATTCAAGAAGATGAACTTCTTAACCTCCTCGCTAAAAAGCCTCAGCCTGTTTGTTACGATGGGTGTCATGAAAACAATCAATGTGAACAAGCTAACATCCGCTGGTTGCCTAGTCAAAATATGGATTGCTGA
Protein sequence	>Msa0069080 KIEIPTDAGIAIVLKVKTLKMAEEAVAAAVALESLSVAESSSTNSNPNPTPQLLSAEQRFEIVRSIGEECIQEDELLNLLAKKPQPVCYDGCHENNQCEQANIRWLPSQNMDC*