Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783630 | XP_003616742.1 | 100.000 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 3.64e-148 | 420 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783630 | sp|Q9SVR0|R13A3_ARATH | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 4.65e-134 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783630 | G7K7C0 | 100.000 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 1.74e-148 | 420 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022970 | Msa0783630 | 0.807861 | 4.110044e-50 | -8.615850e-47 |
| Msa0032810 | Msa0783630 | 0.801706 | 7.933627e-49 | -8.615850e-47 |
| Msa0042480 | Msa0783630 | 0.831972 | 1.232629e-55 | -8.615850e-47 |
| Msa0045730 | Msa0783630 | 0.804394 | 2.206533e-49 | -8.615850e-47 |
| Msa0079590 | Msa0783630 | 0.821085 | 4.869091e-53 | -8.615850e-47 |
| Msa0116130 | Msa0783630 | 0.848774 | 4.945107e-60 | -8.615850e-47 |
| Msa0116670 | Msa0783630 | 0.846136 | 2.625183e-59 | -8.615850e-47 |
| Msa0604960 | Msa0783630 | 0.805152 | 1.532379e-49 | -8.615850e-47 |
| Msa0623200 | Msa0783630 | 0.804489 | 2.107456e-49 | -8.615850e-47 |
| Msa0705800 | Msa0783630 | 0.802701 | 4.951432e-49 | -8.615850e-47 |
| Msa0712610 | Msa0783630 | 0.804996 | 1.652110e-49 | -8.615850e-47 |
| Msa0717380 | Msa0783630 | 0.843485 | 1.361466e-58 | -8.615850e-47 |
| Msa0729200 | Msa0783630 | 0.864369 | 1.277721e-64 | -8.615850e-47 |
| Msa0752910 | Msa0783630 | 0.809720 | 1.645841e-50 | -8.615850e-47 |
| Msa0769590 | Msa0783630 | 0.860103 | 2.607480e-63 | -8.615850e-47 |
| Msa0781310 | Msa0783630 | 0.809875 | 1.524295e-50 | -8.615850e-47 |
| Msa0783630 | Msa0785130 | 0.829288 | 5.597399e-55 | -8.615850e-47 |
| Msa0783630 | Msa0786660 | 0.822176 | 2.724846e-53 | -8.615850e-47 |
| Msa0783630 | Msa0799830 | 0.821757 | 3.407902e-53 | -8.615850e-47 |
| Msa0783630 | Msa0806880 | 0.838653 | 2.529968e-57 | -8.615850e-47 |
| Msa0783630 | Msa0817540 | 0.811289 | 7.541253e-51 | -8.615850e-47 |
| Msa0783630 | Msa0888810 | 0.845656 | 3.544394e-59 | -8.615850e-47 |
| Msa0783630 | Msa0945480 | 0.803782 | 2.958267e-49 | -8.615850e-47 |
| Msa0783630 | Msa1037290 | 0.817657 | 2.943214e-52 | -8.615850e-47 |
| Msa0783630 | Msa1039520 | 0.809793 | 1.587378e-50 | -8.615850e-47 |
| Msa0783630 | Msa1040160 | 0.810297 | 1.236423e-50 | -8.615850e-47 |
| Msa0783630 | Msa1078870 | 0.840389 | 8.955432e-58 | -8.615850e-47 |
| Msa0783630 | Msa1078980 | 0.823942 | 1.055648e-53 | -8.615850e-47 |
| Msa0783630 | Msa1083370 | 0.801186 | 1.014015e-48 | -8.615850e-47 |
| Msa0783630 | Msa1088490 | 0.803914 | 2.776940e-49 | -8.615850e-47 |
| Msa0783630 | Msa1094380 | 0.841319 | 5.108680e-58 | -8.615850e-47 |
| Msa0783630 | Msa1169180 | 0.816005 | 6.911821e-52 | -8.615850e-47 |
| Msa0783630 | Msa1260530 | 0.816970 | 4.202618e-52 | -8.615850e-47 |
| Msa0783630 | Msa1311400 | 0.804030 | 2.627118e-49 | -8.615850e-47 |
| Msa0783630 | Msa1332250 | 0.846043 | 2.783031e-59 | -8.615850e-47 |
| Msa0783630 | Msa1344950 | 0.808472 | 3.045967e-50 | -8.615850e-47 |
| Msa0783630 | Msa1349570 | 0.811270 | 7.612770e-51 | -8.615850e-47 |
| Msa0783630 | Msa1362790 | 0.823192 | 1.580717e-53 | -8.615850e-47 |
| Msa0783630 | Msa1368920 | 0.814598 | 1.420125e-51 | -8.615850e-47 |
| Msa0783630 | Msa1369190 | 0.816914 | 4.325332e-52 | -8.615850e-47 |
| Msa0783630 | Msa1374240 | 0.839745 | 1.318158e-57 | -8.615850e-47 |
| Msa0783630 | Msa1387410 | 0.821900 | 3.156886e-53 | -8.615850e-47 |
| Msa0783630 | Msa1392590 | 0.807984 | 3.868937e-50 | -8.615850e-47 |
| Msa0783630 | Msa1413500 | 0.837171 | 6.083336e-57 | -8.615850e-47 |
| Msa0783630 | Msa1426120 | 0.849194 | 3.781508e-60 | -8.615850e-47 |
| Msa0783630 | Msa1426370 | 0.824326 | 8.576671e-54 | -8.615850e-47 |
| Msa0783630 | Msa1426490 | 0.849523 | 3.062654e-60 | -8.615850e-47 |
| Msa0783630 | Msa1427560 | 0.838057 | 3.605987e-57 | -8.615850e-47 |
| Msa0173530 | Msa0783630 | 0.842419 | 2.615577e-58 | -8.615850e-47 |
| Msa0210360 | Msa0783630 | 0.846199 | 2.523574e-59 | -8.615850e-47 |
| Msa0218830 | Msa0783630 | 0.810602 | 1.062573e-50 | -8.615850e-47 |
| Msa0219120 | Msa0783630 | 0.805204 | 1.494709e-49 | -8.615850e-47 |
| Msa0221030 | Msa0783630 | 0.849762 | 2.626045e-60 | -8.615850e-47 |
| Msa0463520 | Msa0783630 | 0.812467 | 4.178395e-51 | -8.615850e-47 |
| Msa0262480 | Msa0783630 | 0.809536 | 1.802592e-50 | -8.615850e-47 |
| Msa0269180 | Msa0783630 | 0.835973 | 1.228066e-56 | -8.615850e-47 |
| Msa0297830 | Msa0783630 | 0.828991 | 6.607816e-55 | -8.615850e-47 |
| Msa0300350 | Msa0783630 | 0.824700 | 7.002820e-54 | -8.615850e-47 |
| Msa0301220 | Msa0783630 | 0.801738 | 7.816467e-49 | -8.615850e-47 |
| Msa0335840 | Msa0783630 | 0.837559 | 4.839545e-57 | -8.615850e-47 |
| Msa0584030 | Msa0783630 | 0.819448 | 1.155296e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783630 | MtrunA17_Chr5g0437981 | 100.000 | 206 | 0 | 0 | 1 | 206 | 1 | 206 | 3.35e-152 | 420 |
| Msa0783630 | MtrunA17_Chr1g0155981 | 91.262 | 206 | 18 | 0 | 1 | 206 | 1 | 206 | 3.20e-138 | 384 |
| Msa0783630 | MtrunA17_Chr7g0237121 | 90.291 | 206 | 20 | 0 | 1 | 206 | 1 | 206 | 1.38e-137 | 383 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0783630 | AT4G13170.1 | 85.922 | 206 | 29 | 0 | 1 | 206 | 1 | 206 | 4.73e-135 | 377 |
| Msa0783630 | AT5G48760.1 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 8.36e-135 | 376 |
| Msa0783630 | AT5G48760.2 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 8.36e-135 | 376 |
| Msa0783630 | AT3G07110.1 | 84.951 | 206 | 31 | 0 | 1 | 206 | 1 | 206 | 7.34e-134 | 374 |
| Msa0783630 | AT3G24830.1 | 83.981 | 206 | 33 | 0 | 1 | 206 | 1 | 206 | 2.32e-132 | 370 |
| Msa0783630 | AT3G07110.2 | 84.541 | 207 | 31 | 1 | 1 | 206 | 1 | 207 | 2.96e-132 | 370 |
Find 55 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGCAGATCAATAAATTA+AGG | 0.231717 | 5_2:+67783118 | Msa0783630:CDS |
| TGAAGTACATGAGGTTTCTT+AGG | 0.283670 | 5_2:+67780931 | Msa0783630:CDS |
| CTCAGTAATTTCTCAATAAT+AGG | 0.314235 | 5_2:-67783345 | None:intergenic |
| TGTTTAGTTCTATATGTTGT+TGG | 0.354471 | 5_2:+67783270 | Msa0783630:three_prime_UTR |
| GAAGGAGCTCTAAAATGAAT+AGG | 0.395745 | 5_2:-67780984 | None:intergenic |
| ATCCTCTTAATCTTGTCATA+TGG | 0.423761 | 5_2:-67782622 | None:intergenic |
| GAGAAAGGAAAGATCACAAT+TGG | 0.426472 | 5_2:+67783083 | Msa0783630:CDS |
| CTCCATATGACAAGATTAAG+AGG | 0.429099 | 5_2:+67782620 | Msa0783630:CDS |
| TAGGGTATTGAGGCTTCAAA+AGG | 0.430477 | 5_2:+67782876 | Msa0783630:intron |
| GTTCTCCAGAAAATCTTTGA+AGG | 0.432053 | 5_2:-67781002 | None:intergenic |
| GTCAAGTACTGAATAGGCTT+TGG | 0.436523 | 5_2:+67783201 | Msa0783630:exon |
| GCTCCTGTCAAGTACTGAAT+AGG | 0.437980 | 5_2:+67783195 | Msa0783630:exon |
| TTTCTGGTTTGCTCATTAAG+AGG | 0.441395 | 5_2:+67783322 | Msa0783630:three_prime_UTR |
| TAATCAGCAGTAACTATCAT+TGG | 0.449542 | 5_2:+67783405 | Msa0783630:intron |
| AATAGGACCATGACTCGGTT+TGG | 0.455482 | 5_2:-67780967 | None:intergenic |
| TGAACTTACTTGAGAGCATC+AGG | 0.458956 | 5_2:-67782652 | None:intergenic |
| GAAGCAGATCAATAAATTAA+GGG | 0.462554 | 5_2:+67783119 | Msa0783630:CDS |
| GAACTACTATGATATCATAA+AGG | 0.465509 | 5_2:+67782945 | Msa0783630:CDS |
| GATTTGCATGTCCGGTGGAC+TGG | 0.467358 | 5_2:+67780896 | Msa0783630:CDS |
| TAAATGAATTTAGGGTATTG+AGG | 0.470143 | 5_2:+67782866 | Msa0783630:intron |
| AGCTGCTCTTGCTAGGTTGA+AGG | 0.470276 | 5_2:+67782579 | Msa0783630:CDS |
| AAAATTGTGGACGAGAAGCT+TGG | 0.483493 | 5_2:+67783153 | Msa0783630:CDS |
| AAATTGTGGACGAGAAGCTT+GGG | 0.489613 | 5_2:+67783154 | Msa0783630:CDS |
| TCTCCACGCTTTGTCTTGTG+TGG | 0.491410 | 5_2:-67782556 | None:intergenic |
| ACATGAGGTTTCTTAGGAAG+AGG | 0.494032 | 5_2:+67780937 | Msa0783630:CDS |
| GCATGTCCGGTGGACTGGTT+AGG | 0.502693 | 5_2:+67780901 | Msa0783630:CDS |
| GGAATTGGAAAATAAGAGAA+AGG | 0.504497 | 5_2:+67783068 | Msa0783630:intron |
| AATTGTCAGCTGAGGTTGGA+TGG | 0.505889 | 5_2:+67782923 | Msa0783630:CDS |
| AGGAGCAAGTACTTGTAGTT+CGG | 0.510535 | 5_2:-67783178 | None:intergenic |
| GGACACAAATTCTGTCTGCT+TGG | 0.514702 | 5_2:+67782898 | Msa0783630:CDS |
| ATAAGAAGAAAGAATTGAAG+AGG | 0.519651 | 5_2:-67783439 | None:intergenic |
| GACACTAGATATGTTAATCT+CGG | 0.531390 | 5_2:+67783292 | Msa0783630:three_prime_UTR |
| GTGGAGAAGCTGCTCTTGCT+AGG | 0.536980 | 5_2:+67782572 | Msa0783630:CDS |
| TGTGAAGAGATTTGCATGTC+CGG | 0.549696 | 5_2:+67780888 | Msa0783630:CDS |
| GACTCTCTTTGCACATGCGC+CGG | 0.550515 | 5_2:-67780775 | None:intergenic |
| AAGCCTATTCAGTACTTGAC+AGG | 0.553701 | 5_2:-67783198 | None:intergenic |
| TTAATCTTGTCATATGGAGG+TGG | 0.558115 | 5_2:-67782616 | None:intergenic |
| GGACAATTGTCAGCTGAGGT+TGG | 0.562938 | 5_2:+67782919 | Msa0783630:CDS |
| GCTTGGACAATTGTCAGCTG+AGG | 0.569812 | 5_2:+67782915 | Msa0783630:CDS |
| CTCTTAATCTTGTCATATGG+AGG | 0.571934 | 5_2:-67782619 | None:intergenic |
| GCTAGGTTGAAGGTCTATGA+AGG | 0.574592 | 5_2:+67782589 | Msa0783630:CDS |
| AGGGTATTGAGGCTTCAAAA+GGG | 0.594183 | 5_2:+67782877 | Msa0783630:intron |
| GGCAGAAAATGAAGTACATG+AGG | 0.595104 | 5_2:+67780922 | Msa0783630:CDS |
| ATATGACAAGATTAAGAGGA+TGG | 0.595460 | 5_2:+67782624 | Msa0783630:CDS |
| TTTCTGCCTAACCAGTCCAC+CGG | 0.600425 | 5_2:-67780907 | None:intergenic |
| ATGAATACCAAACCGAGTCA+TGG | 0.611358 | 5_2:+67780960 | Msa0783630:CDS |
| GACGCTCGCCACCACATGCT+AGG | 0.613396 | 5_2:+67780804 | Msa0783630:CDS |
| GGTGAAAGCTGAGAAAATTG+TGG | 0.628360 | 5_2:+67783140 | Msa0783630:CDS |
| CTCGCCACCACATGCTAGGT+CGG | 0.628652 | 5_2:+67780808 | Msa0783630:CDS |
| ATTCCACACAAGACAAAGCG+TGG | 0.632644 | 5_2:+67782553 | Msa0783630:CDS |
| GAAGAGATTTGCATGTCCGG+TGG | 0.677614 | 5_2:+67780891 | Msa0783630:CDS |
| ACGCTAACCGACCTAGCATG+TGG | 0.681605 | 5_2:-67780815 | None:intergenic |
| AAATGAATAGGACCATGACT+CGG | 0.684902 | 5_2:-67780972 | None:intergenic |
| GTAGCAAAAGAGTTACTCAA+CGG | 0.709986 | 5_2:+67780843 | Msa0783630:CDS |
| CTAACCGACCTAGCATGTGG+TGG | 0.710751 | 5_2:-67780812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCATGAAATTATATTTTT+AGG | + | chr5_2:67781523-67781542 | Msa0783630:intron | 10.0% |
| !!! | ATCATGAAATTATATTTTTA+GGG | + | chr5_2:67781524-67781543 | Msa0783630:intron | 10.0% |
| !!! | TGAAAATTGTTTTTTTTTTT+TGG | + | chr5_2:67782519-67782538 | Msa0783630:intron | 10.0% |
| !!! | ATCTAAGTTTAGTATTTTTA+TGG | + | chr5_2:67782687-67782706 | Msa0783630:intron | 15.0% |
| !!! | TTTGAATTTTTGTGTTTATA+GGG | - | chr5_2:67782729-67782748 | None:intergenic | 15.0% |
| !! | AAATTACATAAAATATGTGT+AGG | + | chr5_2:67782764-67782783 | Msa0783630:intron | 15.0% |
| !! | AATTACATAAAATATGTGTA+GGG | + | chr5_2:67782765-67782784 | Msa0783630:intron | 15.0% |
| !!! | AAAATTTTGTATATGAAGTG+TGG | - | chr5_2:67780683-67780702 | None:intergenic | 20.0% |
| !!! | GTGTTTATATGATAGTTTTT+TGG | + | chr5_2:67781146-67781165 | Msa0783630:intron | 20.0% |
| !! | TATTTGTCAAAATTTGTGTT+TGG | + | chr5_2:67782273-67782292 | Msa0783630:intron | 20.0% |
| !! | TAGAATGATACTACATAATA+AGG | + | chr5_2:67782296-67782315 | Msa0783630:intron | 20.0% |
| !!! | AGTTTAGTATTTTTATGGTT+AGG | + | chr5_2:67782692-67782711 | Msa0783630:intron | 20.0% |
| !!! | CTTTGAATTTTTGTGTTTAT+AGG | - | chr5_2:67782730-67782749 | None:intergenic | 20.0% |
| !! | TGAATGTGTAAATGAATTTA+GGG | + | chr5_2:67782858-67782877 | Msa0783630:intron | 20.0% |
| ! | CTAATTGAATTTGTAGTGTT+TGG | + | chr5_2:67781226-67781245 | Msa0783630:intron | 25.0% |
| ! | CATCAAAGTGATATACTTAA+TGG | + | chr5_2:67781276-67781295 | Msa0783630:intron | 25.0% |
| ! | TACTAACATAAGCATTTGTA+AGG | + | chr5_2:67781606-67781625 | Msa0783630:intron | 25.0% |
| !!! | TTTTAAGTGTTGTCAAATAG+AGG | + | chr5_2:67781690-67781709 | Msa0783630:intron | 25.0% |
| ! | GAAGCTTCTATTTAGTATAA+TGG | + | chr5_2:67781921-67781940 | Msa0783630:intron | 25.0% |
| ! | ACTCTATAACATAACTGAAT+TGG | + | chr5_2:67781982-67782001 | Msa0783630:intron | 25.0% |
| ! | AAGCTACTATTTAGTAGAAT+AGG | + | chr5_2:67782143-67782162 | Msa0783630:intron | 25.0% |
| !!! | TTTTTTGCTATTGATATCAC+TGG | + | chr5_2:67782232-67782251 | Msa0783630:intron | 25.0% |
| ! | ACATAATAAGGTAAAACATG+TGG | + | chr5_2:67782308-67782327 | Msa0783630:intron | 25.0% |
| ! | AACACAAACATTCTAAACAT+CGG | - | chr5_2:67782442-67782461 | None:intergenic | 25.0% |
| ! | CAAAAATTCAAAGTTAATCC+AGG | + | chr5_2:67782737-67782756 | Msa0783630:intron | 25.0% |
| !! | ATTTTATGTAATTTCATGCC+TGG | - | chr5_2:67782758-67782777 | None:intergenic | 25.0% |
| ! | CTGAATGTGTAAATGAATTT+AGG | + | chr5_2:67782857-67782876 | Msa0783630:intron | 25.0% |
| !!! | TAAATGAATTTAGGGTATTG+AGG | + | chr5_2:67782866-67782885 | Msa0783630:intron | 25.0% |
| ! | GAACTACTATGATATCATAA+AGG | + | chr5_2:67782945-67782964 | Msa0783630:CDS | 25.0% |
| !!! | GTAAATCTTTTGTTGATGAT+AGG | + | chr5_2:67783047-67783066 | Msa0783630:intron | 25.0% |
| ! | AGAAGCAGATCAATAAATTA+AGG | + | chr5_2:67783118-67783137 | Msa0783630:CDS | 25.0% |
| ! | GAAGCAGATCAATAAATTAA+GGG | + | chr5_2:67783119-67783138 | Msa0783630:CDS | 25.0% |
| !!! | TGTTTAGTTCTATATGTTGT+TGG | + | chr5_2:67783270-67783289 | Msa0783630:three_prime_UTR | 25.0% |
| ! | CTCAGTAATTTCTCAATAAT+AGG | - | chr5_2:67783348-67783367 | None:intergenic | 25.0% |
| ! | ATAAGAAGAAAGAATTGAAG+AGG | - | chr5_2:67783442-67783461 | None:intergenic | 25.0% |
| !!! | TTGTGTTTTTAGGTTTTGCA+GGG | - | chr5_2:67780712-67780731 | None:intergenic | 30.0% |
| !!! | TTTGTGTTTTTAGGTTTTGC+AGG | - | chr5_2:67780713-67780732 | None:intergenic | 30.0% |
| ! | GGGTTTTCTTTTGTGTTTTT+AGG | - | chr5_2:67780722-67780741 | None:intergenic | 30.0% |
| !! | TTTTGTGTAGAGTTTTGGTA+GGG | - | chr5_2:67780742-67780761 | None:intergenic | 30.0% |
| !! | TTTTTGTGTAGAGTTTTGGT+AGG | - | chr5_2:67780743-67780762 | None:intergenic | 30.0% |
| ACCAAAACTCTACACAAAAA+TGG | + | chr5_2:67780743-67780762 | Msa0783630:exon | 30.0% | |
| !! | ACCATTTTTGTGTAGAGTTT+TGG | - | chr5_2:67780747-67780766 | None:intergenic | 30.0% |
| !!! | TTTTTTGGTTGCTGTAAATG+TGG | + | chr5_2:67781161-67781180 | Msa0783630:intron | 30.0% |
| TATAAGCTAATTCCATAAGC+TGG | + | chr5_2:67781358-67781377 | Msa0783630:intron | 30.0% | |
| !!! | AGCTTATTTTTACCAGCTTA+TGG | - | chr5_2:67781373-67781392 | None:intergenic | 30.0% |
| AGCTGGTAAAAATAAGCTAT+AGG | + | chr5_2:67781375-67781394 | Msa0783630:intron | 30.0% | |
| !!! | ATATTTTTAGGGTTGTCATC+TGG | + | chr5_2:67781535-67781554 | Msa0783630:intron | 30.0% |
| TTAAATAAGCCAATTCCAAC+AGG | - | chr5_2:67781579-67781598 | None:intergenic | 30.0% | |
| TAAGCATTTGTAAGGCTATT+TGG | + | chr5_2:67781614-67781633 | Msa0783630:intron | 30.0% | |
| AAGCATTTGTAAGGCTATTT+GGG | + | chr5_2:67781615-67781634 | Msa0783630:intron | 30.0% | |
| !! | TAGTATAATGGATTGTCAGA+TGG | + | chr5_2:67781933-67781952 | Msa0783630:intron | 30.0% |
| ! | TTTTATGCGATTGACAACAT+TGG | + | chr5_2:67782017-67782036 | Msa0783630:intron | 30.0% |
| TAGAATAGGTTGTCATAAAG+AGG | + | chr5_2:67782157-67782176 | Msa0783630:intron | 30.0% | |
| GTTCAAATTAAGCTATGCTA+CGG | - | chr5_2:67782202-67782221 | None:intergenic | 30.0% | |
| ATCCTCTTAATCTTGTCATA+TGG | - | chr5_2:67782625-67782644 | None:intergenic | 30.0% | |
| ATATGACAAGATTAAGAGGA+TGG | + | chr5_2:67782624-67782643 | Msa0783630:CDS | 30.0% | |
| !!! | CTTTTGTTGATGATAGGAAT+TGG | + | chr5_2:67783053-67783072 | Msa0783630:intron | 30.0% |
| GGAATTGGAAAATAAGAGAA+AGG | + | chr5_2:67783068-67783087 | Msa0783630:intron | 30.0% | |
| GACACTAGATATGTTAATCT+CGG | + | chr5_2:67783292-67783311 | Msa0783630:three_prime_UTR | 30.0% | |
| ! | TGCTGATTAAGTAACAATAG+TGG | - | chr5_2:67783394-67783413 | None:intergenic | 30.0% |
| TAATCAGCAGTAACTATCAT+TGG | + | chr5_2:67783405-67783424 | Msa0783630:intron | 30.0% | |
| GTAGCAAAAGAGTTACTCAA+CGG | + | chr5_2:67780843-67780862 | Msa0783630:CDS | 35.0% | |
| TGAAGTACATGAGGTTTCTT+AGG | + | chr5_2:67780931-67780950 | Msa0783630:CDS | 35.0% | |
| AAATGAATAGGACCATGACT+CGG | - | chr5_2:67780975-67780994 | None:intergenic | 35.0% | |
| !! | GAAGGAGCTCTAAAATGAAT+AGG | - | chr5_2:67780987-67781006 | None:intergenic | 35.0% |
| GTTCTCCAGAAAATCTTTGA+AGG | - | chr5_2:67781005-67781024 | None:intergenic | 35.0% | |
| TTGACTAAAAAAGACCCGTT+TGG | - | chr5_2:67781422-67781441 | None:intergenic | 35.0% | |
| AAAATAGGACCTGTTGGAAT+TGG | + | chr5_2:67781567-67781586 | Msa0783630:intron | 35.0% | |
| CGTAGAGGAATTTGAACTAA+TGG | + | chr5_2:67781727-67781746 | Msa0783630:intron | 35.0% | |
| TATTGTTTGCGATGCACTAT+TGG | + | chr5_2:67781751-67781770 | Msa0783630:intron | 35.0% | |
| TTGTAGAATGATACCACATC+AGG | + | chr5_2:67781887-67781906 | Msa0783630:intron | 35.0% | |
| !! | TATAATGGATTGTCAGATGG+AGG | + | chr5_2:67781936-67781955 | Msa0783630:intron | 35.0% |
| TGTTATAGAGTACAGAACTC+TGG | - | chr5_2:67781973-67781992 | None:intergenic | 35.0% | |
| ATCACCTAAGATAAACCATG+TGG | + | chr5_2:67782120-67782139 | Msa0783630:intron | 35.0% | |
| ACTAAATAGTAGCTTCCACA+TGG | - | chr5_2:67782138-67782157 | None:intergenic | 35.0% | |
| TACTTTGCATTTGACAACAC+TGG | + | chr5_2:67782369-67782388 | Msa0783630:intron | 35.0% | |
| TTAATCTTGTCATATGGAGG+TGG | - | chr5_2:67782619-67782638 | None:intergenic | 35.0% | |
| CTCTTAATCTTGTCATATGG+AGG | - | chr5_2:67782622-67782641 | None:intergenic | 35.0% | |
| CTCCATATGACAAGATTAAG+AGG | + | chr5_2:67782620-67782639 | Msa0783630:CDS | 35.0% | |
| GTGTAGGGACTAAACTTAAA+AGG | + | chr5_2:67782780-67782799 | Msa0783630:intron | 35.0% | |
| GAGAAAGGAAAGATCACAAT+TGG | + | chr5_2:67783083-67783102 | Msa0783630:CDS | 35.0% | |
| !! | TAATCTCGGAAGTTGTTTTC+TGG | + | chr5_2:67783306-67783325 | Msa0783630:three_prime_UTR | 35.0% |
| !! | TTTCTGGTTTGCTCATTAAG+AGG | + | chr5_2:67783322-67783341 | Msa0783630:three_prime_UTR | 35.0% |
| !!! | GTTTTTAGGTTTTGCAGGGA+CGG | - | chr5_2:67780708-67780727 | None:intergenic | 40.0% |
| CTCTACACAAAAATGGTGTC+AGG | + | chr5_2:67780750-67780769 | Msa0783630:exon | 40.0% | |
| ! | ACAAAAATGGTGTCAGGTTC+CGG | + | chr5_2:67780756-67780775 | Msa0783630:exon | 40.0% |
| TGTGAAGAGATTTGCATGTC+CGG | + | chr5_2:67780888-67780907 | Msa0783630:CDS | 40.0% | |
| GGCAGAAAATGAAGTACATG+AGG | + | chr5_2:67780922-67780941 | Msa0783630:CDS | 40.0% | |
| ACATGAGGTTTCTTAGGAAG+AGG | + | chr5_2:67780937-67780956 | Msa0783630:CDS | 40.0% | |
| ATGAATACCAAACCGAGTCA+TGG | + | chr5_2:67780960-67780979 | Msa0783630:CDS | 40.0% | |
| ! | GAGCTCCTTCAAAGATTTTC+TGG | + | chr5_2:67780997-67781016 | Msa0783630:CDS | 40.0% |
| !! | ATTTTCTGGAGAACTCTTCG+TGG | + | chr5_2:67781011-67781030 | Msa0783630:CDS | 40.0% |
| !! | TTTTCTGGAGAACTCTTCGT+GGG | + | chr5_2:67781012-67781031 | Msa0783630:CDS | 40.0% |
| GGTTGCTGTAAATGTGGTTA+TGG | + | chr5_2:67781167-67781186 | Msa0783630:intron | 40.0% | |
| ATAGGCTCATGAGAAAGTGA+CGG | + | chr5_2:67781393-67781412 | Msa0783630:intron | 40.0% | |
| AGAAAGTGACGGTTACCAAA+CGG | + | chr5_2:67781404-67781423 | Msa0783630:intron | 40.0% | |
| !!! | TTTTAGGGTTGTCATCTGGT+CGG | + | chr5_2:67781539-67781558 | Msa0783630:intron | 40.0% |
| ATCTGGTCGGAGTTCAAAAT+AGG | + | chr5_2:67781552-67781571 | Msa0783630:intron | 40.0% | |
| GAGTTCAAAATAGGACCTGT+TGG | + | chr5_2:67781561-67781580 | Msa0783630:intron | 40.0% | |
| GATACAGCACTATATCGTAG+AGG | + | chr5_2:67781712-67781731 | Msa0783630:intron | 40.0% | |
| CAAATGCAGCTACACTACTA+TGG | - | chr5_2:67781788-67781807 | None:intergenic | 40.0% | |
| TCTACATGCTTTACCTGATG+TGG | - | chr5_2:67781903-67781922 | None:intergenic | 40.0% | |
| GAGAATGTTTGTGACAACAC+TGG | + | chr5_2:67782044-67782063 | Msa0783630:intron | 40.0% | |
| GCTTCCACATGGTTTATCTT+AGG | - | chr5_2:67782127-67782146 | None:intergenic | 40.0% | |
| ! | ATTTTTGCATTTGACGACGC+TGG | + | chr5_2:67782472-67782491 | Msa0783630:intron | 40.0% |
| !! | TGAACTTACTTGAGAGCATC+AGG | - | chr5_2:67782655-67782674 | None:intergenic | 40.0% |
| !! | TAGGGTATTGAGGCTTCAAA+AGG | + | chr5_2:67782876-67782895 | Msa0783630:intron | 40.0% |
| !! | AGGGTATTGAGGCTTCAAAA+GGG | + | chr5_2:67782877-67782896 | Msa0783630:intron | 40.0% |
| GGTGAAAGCTGAGAAAATTG+TGG | + | chr5_2:67783140-67783159 | Msa0783630:CDS | 40.0% | |
| AAAATTGTGGACGAGAAGCT+TGG | + | chr5_2:67783153-67783172 | Msa0783630:CDS | 40.0% | |
| AAATTGTGGACGAGAAGCTT+GGG | + | chr5_2:67783154-67783173 | Msa0783630:CDS | 40.0% | |
| AGGAGCAAGTACTTGTAGTT+CGG | - | chr5_2:67783181-67783200 | None:intergenic | 40.0% | |
| AAGCCTATTCAGTACTTGAC+AGG | - | chr5_2:67783201-67783220 | None:intergenic | 40.0% | |
| !! | GTCAAGTACTGAATAGGCTT+TGG | + | chr5_2:67783201-67783220 | Msa0783630:exon | 40.0% |
| !! | AATAGGACCATGACTCGGTT+TGG | - | chr5_2:67780970-67780989 | None:intergenic | 45.0% |
| GAAAGTGACGGTTACCAAAC+GGG | + | chr5_2:67781405-67781424 | Msa0783630:intron | 45.0% | |
| TAAGCTATGCTACGGAGCTA+TGG | - | chr5_2:67782194-67782213 | None:intergenic | 45.0% | |
| ATTCCACACAAGACAAAGCG+TGG | + | chr5_2:67782553-67782572 | Msa0783630:CDS | 45.0% | |
| ! | GCTAGGTTGAAGGTCTATGA+AGG | + | chr5_2:67782589-67782608 | Msa0783630:CDS | 45.0% |
| GGACACAAATTCTGTCTGCT+TGG | + | chr5_2:67782898-67782917 | Msa0783630:CDS | 45.0% | |
| AATTGTCAGCTGAGGTTGGA+TGG | + | chr5_2:67782923-67782942 | Msa0783630:CDS | 45.0% | |
| !! | GCTCCTGTCAAGTACTGAAT+AGG | + | chr5_2:67783195-67783214 | Msa0783630:exon | 45.0% |
| GAAGAGATTTGCATGTCCGG+TGG | + | chr5_2:67780891-67780910 | Msa0783630:CDS | 50.0% | |
| TTTCTGCCTAACCAGTCCAC+CGG | - | chr5_2:67780910-67780929 | None:intergenic | 50.0% | |
| TCTCCACGCTTTGTCTTGTG+TGG | - | chr5_2:67782559-67782578 | None:intergenic | 50.0% | |
| ! | AGCTGCTCTTGCTAGGTTGA+AGG | + | chr5_2:67782579-67782598 | Msa0783630:CDS | 50.0% |
| GCTTGGACAATTGTCAGCTG+AGG | + | chr5_2:67782915-67782934 | Msa0783630:CDS | 50.0% | |
| GGACAATTGTCAGCTGAGGT+TGG | + | chr5_2:67782919-67782938 | Msa0783630:CDS | 50.0% | |
| GACTCTCTTTGCACATGCGC+CGG | - | chr5_2:67780778-67780797 | None:intergenic | 55.0% | |
| CTAACCGACCTAGCATGTGG+TGG | - | chr5_2:67780815-67780834 | None:intergenic | 55.0% | |
| ACGCTAACCGACCTAGCATG+TGG | - | chr5_2:67780818-67780837 | None:intergenic | 55.0% | |
| GATTTGCATGTCCGGTGGAC+TGG | + | chr5_2:67780896-67780915 | Msa0783630:CDS | 55.0% | |
| GTGGAGAAGCTGCTCTTGCT+AGG | + | chr5_2:67782572-67782591 | Msa0783630:CDS | 55.0% | |
| CTCGCCACCACATGCTAGGT+CGG | + | chr5_2:67780808-67780827 | Msa0783630:CDS | 60.0% | |
| !! | GCATGTCCGGTGGACTGGTT+AGG | + | chr5_2:67780901-67780920 | Msa0783630:CDS | 60.0% |
| GACGCTCGCCACCACATGCT+AGG | + | chr5_2:67780804-67780823 | Msa0783630:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 67780680 | 67783475 | 67780680 | ID=Msa0783630;Name=Msa0783630 |
| chr5_2 | mRNA | 67780680 | 67783475 | 67780680 | ID=Msa0783630-mRNA-1;Parent=Msa0783630;Name=Msa0783630-mRNA-1;_AED=0.13;_eAED=0.13;_QI=82|1|1|1|0.75|0.6|5|238|206 |
| chr5_2 | exon | 67780680 | 67781033 | 67780680 | ID=Msa0783630-mRNA-1:exon:20276;Parent=Msa0783630-mRNA-1 |
| chr5_2 | exon | 67782549 | 67782665 | 67782549 | ID=Msa0783630-mRNA-1:exon:20277;Parent=Msa0783630-mRNA-1 |
| chr5_2 | exon | 67782879 | 67782966 | 67782879 | ID=Msa0783630-mRNA-1:exon:20278;Parent=Msa0783630-mRNA-1 |
| chr5_2 | exon | 67783069 | 67783389 | 67783069 | ID=Msa0783630-mRNA-1:exon:20279;Parent=Msa0783630-mRNA-1 |
| chr5_2 | exon | 67783415 | 67783475 | 67783415 | ID=Msa0783630-mRNA-1:exon:20280;Parent=Msa0783630-mRNA-1 |
| chr5_2 | five_prime_UTR | 67780680 | 67780761 | 67780680 | ID=Msa0783630-mRNA-1:five_prime_utr;Parent=Msa0783630-mRNA-1 |
| chr5_2 | CDS | 67780762 | 67781033 | 67780762 | ID=Msa0783630-mRNA-1:cds;Parent=Msa0783630-mRNA-1 |
| chr5_2 | CDS | 67782549 | 67782665 | 67782549 | ID=Msa0783630-mRNA-1:cds;Parent=Msa0783630-mRNA-1 |
| chr5_2 | CDS | 67782879 | 67782966 | 67782879 | ID=Msa0783630-mRNA-1:cds;Parent=Msa0783630-mRNA-1 |
| chr5_2 | CDS | 67783069 | 67783212 | 67783069 | ID=Msa0783630-mRNA-1:cds;Parent=Msa0783630-mRNA-1 |
| chr5_2 | three_prime_UTR | 67783213 | 67783389 | 67783213 | ID=Msa0783630-mRNA-1:three_prime_utr;Parent=Msa0783630-mRNA-1 |
| chr5_2 | three_prime_UTR | 67783415 | 67783475 | 67783415 | ID=Msa0783630-mRNA-1:three_prime_utr;Parent=Msa0783630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
