AlfalfaGEDB | Msa1374240

M. sativa cultivar zhongmu-4 / Msa1374240

KEGG: K02960
GO: GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00380.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374240	XP_003631001.1	99.286	140	1	0	1	140	1	140	2.61e-96	283

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374240	sp\|P46293\|RS16_GOSHI	93.571	140	9	0	1	140	6	145	1.09e-92	267

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374240	G7LBJ0	99.286	140	1	0	1	140	1	140	1.25e-96	283

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003870	Msa1374240	0.840976	6.285485e-58	-8.615850e-47
Msa0027590	Msa1374240	0.828395	9.206382e-55	-8.615850e-47
Msa0042480	Msa1374240	0.827511	1.502558e-54	-8.615850e-47
Msa0045730	Msa1374240	0.827504	1.508844e-54	-8.615850e-47
Msa0049690	Msa1374240	0.814457	1.525939e-51	-8.615850e-47
Msa0069080	Msa1374240	0.814966	1.177148e-51	-8.615850e-47
Msa0069440	Msa1374240	0.845754	3.333387e-59	-8.615850e-47
Msa0075350	Msa1374240	0.837646	4.597424e-57	-8.615850e-47
Msa0079590	Msa1374240	0.813571	2.392391e-51	-8.615850e-47
Msa0100420	Msa1374240	0.801034	1.089451e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374240	MtrunA17_Chr8g0392251	99.286	140	1	1	140	1	140	2.40e-100	283
Msa1374240	MtrunA17_Chr8g0392191	99.286	140	1	1	140	1	140	2.40e-100	283
Msa1374240	MtrunA17_Chr5g0432551	98.571	140	2	1	140	1	140	6.11e-100	282
Msa1374240	MtrunA17_Chr4g0044571	94.286	140	8	1	140	4	143	7.79e-96	272

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1374240	AT2G09990.1	89.209	139	15	2	140	8	146	1.92e-91	261
Msa1374240	AT5G18380.1	88.489	139	16	2	140	8	146	3.25e-91	261
Msa1374240	AT3G04230.1	83.453	139	23	2	140	8	146	6.19e-85	245
Msa1374240	AT5G18380.2	86.400	125	17	2	126	8	132	1.67e-78	229
Msa1374240	AT5G18380.3	86.111	108	15	2	109	8	115	5.55e-67	199

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Find 38 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTAACGATAAGATTTC+TGG	0.210396	tig0019471:-83575	None:intergenic
AACAAGTGCAATGCTTTGGC+CGG	0.546867	tig0019471:+83175	Msa1374240:CDS
AACGGTGTCTTCCGAGAAGG+AGG	0.549270	tig0019471:-83317	None:intergenic
ACAGAGTAAGAAAGAGATTA+AGG	0.239341	tig0019471:+83458	Msa1374240:CDS
ACCCACTGCAAGAGAGGTCG+CGG	0.562945	tig0019471:+83219	Msa1374240:CDS
ACCGCGACCTCTCTTGCAGT+GGG	0.603590	tig0019471:-83220	None:intergenic
ACGGATCCTCATATCAACGC+CGG	0.685813	tig0019471:-83343	None:intergenic
AGGATCCGTGTGAAGGGAGG+AGG	0.521481	tig0019471:+83357	Msa1374240:CDS
ATGAGGATCCGTGTGAAGGG+AGG	0.615322	tig0019471:+83354	Msa1374240:CDS
ATGGAACAAGTGCAATGCTT+TGG	0.487256	tig0019471:+83171	Msa1374240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAGAGTAAGAAAGAGATTA+AGG	+	tig0019471:83458-83477	Msa1374240:CDS	30.0%
ATGGAACAAGTGCAATGCTT+TGG	+	tig0019471:83171-83190	Msa1374240:CDS	40.0%
CTTAGCAATACTCTGACGAA+TGG	-	tig0019471:83403-83422	None:intergenic	40.0%
AACAAGTGCAATGCTTTGGC+CGG	+	tig0019471:83175-83194	Msa1374240:CDS	45.0%
GCCTGAGATTCTTCGTTTCA+AGG	+	tig0019471:83281-83300	Msa1374240:CDS	45.0%
GCCTTGAAACGAAGAATCTC+AGG	-	tig0019471:83285-83304	None:intergenic	45.0%
TACGAACCAATCCTCCTTCT+CGG	+	tig0019471:83306-83325	Msa1374240:CDS	45.0%
TGATATGAGGATCCGTGTGA+AGG	+	tig0019471:83350-83369	Msa1374240:CDS	45.0%
GATATGAGGATCCGTGTGAA+GGG	+	tig0019471:83351-83370	Msa1374240:CDS	45.0%
TGTGAGCCTAAGAAGTTTGG+TGG	+	tig0019471:83531-83550	Msa1374240:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019471	gene	83171	83593	83171	ID=Msa1374240;Name=Msa1374240
tig0019471	mRNA	83171	83593	83171	ID=Msa1374240-mRNA-1;Parent=Msa1374240;Name=Msa1374240-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|140
tig0019471	exon	83171	83593	83171	ID=Msa1374240-mRNA-1:exon:3765;Parent=Msa1374240-mRNA-1
tig0019471	CDS	83171	83593	83171	ID=Msa1374240-mRNA-1:cds;Parent=Msa1374240-mRNA-1

Gene Sequence

>Msa1374240

ATGGAACAAGTGCAATGCTTTGGCCGGAAGAAGAACGCCGTTGCGGTAACCCACTGCAAGAGAGGTCGCGGTCTGATCAAGATCAACGGCTGTCCAATCGAACTGGTTGAGCCTGAGATTCTTCGTTTCAAGGCATACGAACCAATCCTCCTTCTCGGAAGACACCGTTTCGCCGGCGTTGATATGAGGATCCGTGTGAAGGGAGGAGGTCACACTTCTCAGATCTACGCCATTCGTCAGAGTATTGCTAAGGCTTTGGTTGCTTACTATCAGAAATTTGTTGATGAACAGAGTAAGAAAGAGATTAAGGATATTCTTGTTCGTTATGATCGTACTCTTCTTGTTGCTGATCCTAGACGCTGTGAGCCTAAGAAGTTTGGTGGTCGTGGTGCTCGTGCTAGGTTCCAGAAATCTTATCGTTAG

Protein sequence

>Msa1374240

MEQVQCFGRKKNAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKFVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR*