Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374240 | XP_003631001.1 | 99.286 | 140 | 1 | 0 | 1 | 140 | 1 | 140 | 2.61e-96 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374240 | sp|P46293|RS16_GOSHI | 93.571 | 140 | 9 | 0 | 1 | 140 | 6 | 145 | 1.09e-92 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374240 | G7LBJ0 | 99.286 | 140 | 1 | 0 | 1 | 140 | 1 | 140 | 1.25e-96 | 283 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003870 | Msa1374240 | 0.840976 | 6.285485e-58 | -8.615850e-47 |
| Msa0027590 | Msa1374240 | 0.828395 | 9.206382e-55 | -8.615850e-47 |
| Msa0042480 | Msa1374240 | 0.827511 | 1.502558e-54 | -8.615850e-47 |
| Msa0045730 | Msa1374240 | 0.827504 | 1.508844e-54 | -8.615850e-47 |
| Msa0049690 | Msa1374240 | 0.814457 | 1.525939e-51 | -8.615850e-47 |
| Msa0069080 | Msa1374240 | 0.814966 | 1.177148e-51 | -8.615850e-47 |
| Msa0069440 | Msa1374240 | 0.845754 | 3.333387e-59 | -8.615850e-47 |
| Msa0075350 | Msa1374240 | 0.837646 | 4.597424e-57 | -8.615850e-47 |
| Msa0079590 | Msa1374240 | 0.813571 | 2.392391e-51 | -8.615850e-47 |
| Msa0100420 | Msa1374240 | 0.801034 | 1.089451e-48 | -8.615850e-47 |
| Msa0116130 | Msa1374240 | 0.853331 | 2.564281e-61 | -8.615850e-47 |
| Msa0116670 | Msa1374240 | 0.818713 | 1.698357e-52 | -8.615850e-47 |
| Msa1344950 | Msa1374240 | 0.827798 | 1.281943e-54 | -8.615850e-47 |
| Msa1349570 | Msa1374240 | 0.822959 | 1.791436e-53 | -8.615850e-47 |
| Msa1352140 | Msa1374240 | 0.802738 | 4.866231e-49 | -8.615850e-47 |
| Msa1356790 | Msa1374240 | 0.878495 | 2.681376e-69 | -8.615850e-47 |
| Msa1362790 | Msa1374240 | 0.845922 | 3.001860e-59 | -8.615850e-47 |
| Msa1368920 | Msa1374240 | 0.878683 | 2.303235e-69 | -8.615850e-47 |
| Msa1369190 | Msa1374240 | 0.850117 | 2.089048e-60 | -8.615850e-47 |
| Msa1374240 | Msa1392590 | 0.862251 | 5.785968e-64 | -8.615850e-47 |
| Msa1374240 | Msa1397100 | 0.855350 | 6.691744e-62 | -8.615850e-47 |
| Msa1374240 | Msa1403910 | 0.893594 | 5.437704e-75 | -8.615850e-47 |
| Msa1374240 | Msa1406080 | 0.855673 | 5.389454e-62 | -8.615850e-47 |
| Msa1374240 | Msa1410440 | 0.807296 | 5.418685e-50 | -8.615850e-47 |
| Msa1374240 | Msa1413500 | 0.807695 | 4.458412e-50 | -8.615850e-47 |
| Msa1374240 | Msa1418770 | 0.861952 | 7.143667e-64 | -8.615850e-47 |
| Msa1374240 | Msa1426120 | 0.819775 | 9.726337e-53 | -8.615850e-47 |
| Msa1374240 | Msa1426370 | 0.824168 | 9.339264e-54 | -8.615850e-47 |
| Msa1374240 | Msa1426490 | 0.892523 | 1.467687e-74 | -8.615850e-47 |
| Msa1374240 | Msa1427560 | 0.807137 | 5.854781e-50 | -8.615850e-47 |
| Msa1374240 | Msa1437280 | 0.815758 | 7.846239e-52 | -8.615850e-47 |
| Msa1374240 | Msa1455950 | 0.817446 | 3.284357e-52 | -8.615850e-47 |
| Msa1374240 | Msa1462860 | 0.818336 | 2.067326e-52 | -8.615850e-47 |
| Msa0604960 | Msa1374240 | 0.896463 | 3.602955e-76 | -8.615850e-47 |
| Msa0622750 | Msa1374240 | 0.800088 | 1.698338e-48 | -8.615850e-47 |
| Msa0623200 | Msa1374240 | 0.820264 | 7.518399e-53 | -8.615850e-47 |
| Msa0625570 | Msa1374240 | 0.813696 | 2.245912e-51 | -8.615850e-47 |
| Msa0660590 | Msa1374240 | 0.814155 | 1.779619e-51 | -8.615850e-47 |
| Msa0683660 | Msa1374240 | 0.822557 | 2.222175e-53 | -8.615850e-47 |
| Msa0705000 | Msa1374240 | 0.804361 | 2.241473e-49 | -8.615850e-47 |
| Msa0705800 | Msa1374240 | 0.891417 | 4.048479e-74 | -8.615850e-47 |
| Msa0712610 | Msa1374240 | 0.894999 | 1.452804e-75 | -8.615850e-47 |
| Msa0717380 | Msa1374240 | 0.853009 | 3.171962e-61 | -8.615850e-47 |
| Msa0729200 | Msa1374240 | 0.857953 | 1.148181e-62 | -8.615850e-47 |
| Msa0752910 | Msa1374240 | 0.872112 | 4.083146e-67 | -8.615850e-47 |
| Msa0766080 | Msa1374240 | 0.821410 | 4.097509e-53 | -8.615850e-47 |
| Msa0769590 | Msa1374240 | 0.846690 | 1.853665e-59 | -8.615850e-47 |
| Msa0781080 | Msa1374240 | 0.867528 | 1.280858e-65 | -8.615850e-47 |
| Msa0781310 | Msa1374240 | 0.803505 | 3.376972e-49 | -8.615850e-47 |
| Msa0783630 | Msa1374240 | 0.839745 | 1.318158e-57 | -8.615850e-47 |
| Msa0785130 | Msa1374240 | 0.816668 | 4.910351e-52 | -8.615850e-47 |
| Msa0786650 | Msa1374240 | 0.823833 | 1.119437e-53 | -8.615850e-47 |
| Msa0788380 | Msa1374240 | 0.850411 | 1.728479e-60 | -8.615850e-47 |
| Msa0792420 | Msa1374240 | 0.833040 | 6.700174e-56 | -8.615850e-47 |
| Msa0799830 | Msa1374240 | 0.831405 | 1.700462e-55 | -8.615850e-47 |
| Msa0802480 | Msa1374240 | 0.808597 | 2.864883e-50 | -8.615850e-47 |
| Msa0806880 | Msa1374240 | 0.812910 | 3.341952e-51 | -8.615850e-47 |
| Msa0822580 | Msa1374240 | 0.863831 | 1.879322e-64 | -8.615850e-47 |
| Msa0827380 | Msa1374240 | 0.840718 | 7.346008e-58 | -8.615850e-47 |
| Msa0838070 | Msa1374240 | 0.814161 | 1.773931e-51 | -8.615850e-47 |
| Msa0131560 | Msa1374240 | 0.835472 | 1.645016e-56 | -8.615850e-47 |
| Msa0138890 | Msa1374240 | 0.868930 | 4.528135e-66 | -8.615850e-47 |
| Msa0146420 | Msa1374240 | 0.802264 | 6.092634e-49 | -8.615850e-47 |
| Msa0173530 | Msa1374240 | 0.816706 | 4.815508e-52 | -8.615850e-47 |
| Msa0177360 | Msa1374240 | 0.822381 | 2.442212e-53 | -8.615850e-47 |
| Msa0191450 | Msa1374240 | 0.827206 | 1.777826e-54 | -8.615850e-47 |
| Msa0210360 | Msa1374240 | 0.851788 | 7.062250e-61 | -8.615850e-47 |
| Msa0218830 | Msa1374240 | 0.829684 | 4.486194e-55 | -8.615850e-47 |
| Msa0219120 | Msa1374240 | 0.823303 | 1.489273e-53 | -8.615850e-47 |
| Msa0221030 | Msa1374240 | 0.860426 | 2.083271e-63 | -8.615850e-47 |
| Msa1240270 | Msa1374240 | 0.825947 | 3.550334e-54 | -8.615850e-47 |
| Msa1241190 | Msa1374240 | 0.841472 | 4.654340e-58 | -8.615850e-47 |
| Msa1256840 | Msa1374240 | 0.801926 | 7.148556e-49 | -8.615850e-47 |
| Msa1266060 | Msa1374240 | 0.805758 | 1.143792e-49 | -8.615850e-47 |
| Msa1278070 | Msa1374240 | 0.805138 | 1.542644e-49 | -8.615850e-47 |
| Msa1311400 | Msa1374240 | 0.857831 | 1.248174e-62 | -8.615850e-47 |
| Msa1321790 | Msa1374240 | 0.812726 | 3.666641e-51 | -8.615850e-47 |
| Msa1332250 | Msa1374240 | 0.836548 | 8.774961e-57 | -8.615850e-47 |
| Msa0369410 | Msa1374240 | 0.811112 | 8.240585e-51 | -8.615850e-47 |
| Msa0376890 | Msa1374240 | 0.838135 | 3.442930e-57 | -8.615850e-47 |
| Msa0463520 | Msa1374240 | 0.808915 | 2.449026e-50 | -8.615850e-47 |
| Msa0471880 | Msa1374240 | 0.848727 | 5.098574e-60 | -8.615850e-47 |
| Msa0481520 | Msa1374240 | 0.840075 | 1.081395e-57 | -8.615850e-47 |
| Msa0481850 | Msa1374240 | 0.848832 | 4.765431e-60 | -8.615850e-47 |
| Msa1021120 | Msa1374240 | 0.829194 | 5.900727e-55 | -8.615850e-47 |
| Msa1037290 | Msa1374240 | 0.880294 | 6.181476e-70 | -8.615850e-47 |
| Msa1040160 | Msa1374240 | 0.815666 | 8.225283e-52 | -8.615850e-47 |
| Msa1041680 | Msa1374240 | 0.861091 | 1.308968e-63 | -8.615850e-47 |
| Msa1048690 | Msa1374240 | 0.805648 | 1.206021e-49 | -8.615850e-47 |
| Msa1058700 | Msa1374240 | 0.817092 | 3.945765e-52 | -8.615850e-47 |
| Msa1078870 | Msa1374240 | 0.806425 | 8.276930e-50 | -8.615850e-47 |
| Msa1080350 | Msa1374240 | 0.851384 | 9.191975e-61 | -8.615850e-47 |
| Msa1082170 | Msa1374240 | 0.845730 | 3.383613e-59 | -8.615850e-47 |
| Msa1083370 | Msa1374240 | 0.800460 | 1.426104e-48 | -8.615850e-47 |
| Msa1085470 | Msa1374240 | 0.801697 | 7.968162e-49 | -8.615850e-47 |
| Msa1094380 | Msa1374240 | 0.815007 | 1.152416e-51 | -8.615850e-47 |
| Msa0262480 | Msa1374240 | 0.801761 | 7.728570e-49 | -8.615850e-47 |
| Msa0297830 | Msa1374240 | 0.860025 | 2.752907e-63 | -8.615850e-47 |
| Msa0298870 | Msa1374240 | 0.832000 | 1.213354e-55 | -8.615850e-47 |
| Msa0301220 | Msa1374240 | 0.815088 | 1.105907e-51 | -8.615850e-47 |
| Msa0306690 | Msa1374240 | 0.803421 | 3.513634e-49 | -8.615850e-47 |
| Msa0333910 | Msa1374240 | 0.809134 | 2.198235e-50 | -8.615850e-47 |
| Msa0334030 | Msa1374240 | 0.810539 | 1.096391e-50 | -8.615850e-47 |
| Msa0335840 | Msa1374240 | 0.867686 | 1.139300e-65 | -8.615850e-47 |
| Msa0337670 | Msa1374240 | 0.813617 | 2.338065e-51 | -8.615850e-47 |
| Msa0348830 | Msa1374240 | 0.823818 | 1.128379e-53 | -8.615850e-47 |
| Msa1115590 | Msa1374240 | 0.809034 | 2.309215e-50 | -8.615850e-47 |
| Msa1125500 | Msa1374240 | 0.810140 | 1.336354e-50 | -8.615850e-47 |
| Msa1125580 | Msa1374240 | 0.837506 | 4.993050e-57 | -8.615850e-47 |
| Msa1125860 | Msa1374240 | 0.840714 | 7.362773e-58 | -8.615850e-47 |
| Msa1126060 | Msa1374240 | 0.840512 | 8.313905e-58 | -8.615850e-47 |
| Msa1126520 | Msa1374240 | 0.880687 | 4.471907e-70 | -8.615850e-47 |
| Msa1164150 | Msa1374240 | 0.854332 | 1.320443e-61 | -8.615850e-47 |
| Msa1166570 | Msa1374240 | 0.865738 | 4.749038e-65 | -8.615850e-47 |
| Msa1186030 | Msa1374240 | 0.833102 | 6.467419e-56 | -8.615850e-47 |
| Msa1186980 | Msa1374240 | 0.816939 | 4.269374e-52 | -8.615850e-47 |
| Msa1218170 | Msa1374240 | 0.865423 | 5.968718e-65 | -8.615850e-47 |
| Msa0534750 | Msa1374240 | 0.807214 | 5.639489e-50 | -8.615850e-47 |
| Msa0546030 | Msa1374240 | 0.807166 | 5.772668e-50 | -8.615850e-47 |
| Msa0581600 | Msa1374240 | 0.800992 | 1.111167e-48 | -8.615850e-47 |
| Msa0584030 | Msa1374240 | 0.944705 | 1.192852e-103 | -8.615850e-47 |
| Msa0596370 | Msa1374240 | 0.814293 | 1.658556e-51 | -8.615850e-47 |
| Msa0861320 | Msa1374240 | 0.826286 | 2.949207e-54 | -8.615850e-47 |
| Msa0867060 | Msa1374240 | 0.804025 | 2.633463e-49 | -8.615850e-47 |
| Msa0876170 | Msa1374240 | 0.832791 | 7.728038e-56 | -8.615850e-47 |
| Msa0888810 | Msa1374240 | 0.836852 | 7.337449e-57 | -8.615850e-47 |
| Msa0915540 | Msa1374240 | 0.859603 | 3.688947e-63 | -8.615850e-47 |
| Msa0945480 | Msa1374240 | 0.862752 | 4.056553e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374240 | MtrunA17_Chr8g0392251 | 99.286 | 140 | 1 | 0 | 1 | 140 | 1 | 140 | 2.40e-100 | 283 |
| Msa1374240 | MtrunA17_Chr8g0392191 | 99.286 | 140 | 1 | 0 | 1 | 140 | 1 | 140 | 2.40e-100 | 283 |
| Msa1374240 | MtrunA17_Chr5g0432551 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 6.11e-100 | 282 |
| Msa1374240 | MtrunA17_Chr4g0044571 | 94.286 | 140 | 8 | 0 | 1 | 140 | 4 | 143 | 7.79e-96 | 272 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374240 | AT2G09990.1 | 89.209 | 139 | 15 | 0 | 2 | 140 | 8 | 146 | 1.92e-91 | 261 |
| Msa1374240 | AT5G18380.1 | 88.489 | 139 | 16 | 0 | 2 | 140 | 8 | 146 | 3.25e-91 | 261 |
| Msa1374240 | AT3G04230.1 | 83.453 | 139 | 23 | 0 | 2 | 140 | 8 | 146 | 6.19e-85 | 245 |
| Msa1374240 | AT5G18380.2 | 86.400 | 125 | 17 | 0 | 2 | 126 | 8 | 132 | 1.67e-78 | 229 |
| Msa1374240 | AT5G18380.3 | 86.111 | 108 | 15 | 0 | 2 | 109 | 8 | 115 | 5.55e-67 | 199 |
Find 38 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCTAACGATAAGATTTC+TGG | 0.210396 | tig0019471:-83575 | None:intergenic |
| ACAGAGTAAGAAAGAGATTA+AGG | 0.239341 | tig0019471:+83458 | Msa1374240:CDS |
| CCGCAACGGCGTTCTTCTTC+CGG | 0.308388 | tig0019471:-83194 | None:intergenic |
| GCCTGAGATTCTTCGTTTCA+AGG | 0.344740 | tig0019471:+83281 | Msa1374240:CDS |
| CGCTGTGAGCCTAAGAAGTT+TGG | 0.359075 | tig0019471:+83528 | Msa1374240:CDS |
| TCAGAGTATTGCTAAGGCTT+TGG | 0.386737 | tig0019471:+83407 | Msa1374240:CDS |
| CCACGACCACCAAACTTCTT+AGG | 0.436009 | tig0019471:-83537 | None:intergenic |
| TACGAACCAATCCTCCTTCT+CGG | 0.444217 | tig0019471:+83306 | Msa1374240:CDS |
| GTTTCGCCGGCGTTGATATG+AGG | 0.478501 | tig0019471:+83337 | Msa1374240:CDS |
| GCCTTGAAACGAAGAATCTC+AGG | 0.478888 | tig0019471:-83282 | None:intergenic |
| CTCGGAAGACACCGTTTCGC+CGG | 0.484088 | tig0019471:+83324 | Msa1374240:CDS |
| ATGGAACAAGTGCAATGCTT+TGG | 0.487256 | tig0019471:+83171 | Msa1374240:CDS |
| CAACGGCTGTCCAATCGAAC+TGG | 0.488470 | tig0019471:+83254 | Msa1374240:CDS |
| GTGGTCGTGGTGCTCGTGCT+AGG | 0.502073 | tig0019471:+83550 | Msa1374240:CDS |
| CCTAAGAAGTTTGGTGGTCG+TGG | 0.511400 | tig0019471:+83537 | Msa1374240:CDS |
| AGGATCCGTGTGAAGGGAGG+AGG | 0.521481 | tig0019471:+83357 | Msa1374240:CDS |
| TCATATCAACGCCGGCGAAA+CGG | 0.524265 | tig0019471:-83335 | None:intergenic |
| TCAGGCTCAACCAGTTCGAT+TGG | 0.524396 | tig0019471:-83264 | None:intergenic |
| AACAAGTGCAATGCTTTGGC+CGG | 0.546867 | tig0019471:+83175 | Msa1374240:CDS |
| AACGGTGTCTTCCGAGAAGG+AGG | 0.549270 | tig0019471:-83317 | None:intergenic |
| TGTGAGCCTAAGAAGTTTGG+TGG | 0.558448 | tig0019471:+83531 | Msa1374240:CDS |
| GACCGCGACCTCTCTTGCAG+TGG | 0.558828 | tig0019471:-83221 | None:intergenic |
| ACCCACTGCAAGAGAGGTCG+CGG | 0.562945 | tig0019471:+83219 | Msa1374240:CDS |
| CATTCGTCAGAGTATTGCTA+AGG | 0.576627 | tig0019471:+83401 | Msa1374240:CDS |
| TGATATGAGGATCCGTGTGA+AGG | 0.579448 | tig0019471:+83350 | Msa1374240:CDS |
| GCGGTAACCCACTGCAAGAG+AGG | 0.580471 | tig0019471:+83213 | Msa1374240:CDS |
| TTCTTAGGCTCACAGCGTCT+AGG | 0.590494 | tig0019471:-83522 | None:intergenic |
| TGTCTTCCGAGAAGGAGGAT+TGG | 0.592227 | tig0019471:-83312 | None:intergenic |
| GATATGAGGATCCGTGTGAA+GGG | 0.594162 | tig0019471:+83351 | Msa1374240:CDS |
| CTTGCAGTGGGTTACCGCAA+CGG | 0.599991 | tig0019471:-83208 | None:intergenic |
| ACCGCGACCTCTCTTGCAGT+GGG | 0.603590 | tig0019471:-83220 | None:intergenic |
| CGCGGTCTGATCAAGATCAA+CGG | 0.609302 | tig0019471:+83237 | Msa1374240:CDS |
| CTTAGCAATACTCTGACGAA+TGG | 0.614188 | tig0019471:-83400 | None:intergenic |
| ATGAGGATCCGTGTGAAGGG+AGG | 0.615322 | tig0019471:+83354 | Msa1374240:CDS |
| CGAAACGGTGTCTTCCGAGA+AGG | 0.622095 | tig0019471:-83320 | None:intergenic |
| TGTGACCTCCTCCCTTCACA+CGG | 0.629480 | tig0019471:-83362 | None:intergenic |
| CCGGAAGAAGAACGCCGTTG+CGG | 0.651449 | tig0019471:+83194 | Msa1374240:CDS |
| ACGGATCCTCATATCAACGC+CGG | 0.685813 | tig0019471:-83343 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ACAGAGTAAGAAAGAGATTA+AGG | + | tig0019471:83458-83477 | Msa1374240:CDS | 30.0% | |
| ATGGAACAAGTGCAATGCTT+TGG | + | tig0019471:83171-83190 | Msa1374240:CDS | 40.0% | |
| CTTAGCAATACTCTGACGAA+TGG | - | tig0019471:83403-83422 | None:intergenic | 40.0% | |
| !! | CATTCGTCAGAGTATTGCTA+AGG | + | tig0019471:83401-83420 | Msa1374240:CDS | 40.0% |
| !! | TCAGAGTATTGCTAAGGCTT+TGG | + | tig0019471:83407-83426 | Msa1374240:CDS | 40.0% |
| AACAAGTGCAATGCTTTGGC+CGG | + | tig0019471:83175-83194 | Msa1374240:CDS | 45.0% | |
| GCCTGAGATTCTTCGTTTCA+AGG | + | tig0019471:83281-83300 | Msa1374240:CDS | 45.0% | |
| GCCTTGAAACGAAGAATCTC+AGG | - | tig0019471:83285-83304 | None:intergenic | 45.0% | |
| TACGAACCAATCCTCCTTCT+CGG | + | tig0019471:83306-83325 | Msa1374240:CDS | 45.0% | |
| TGATATGAGGATCCGTGTGA+AGG | + | tig0019471:83350-83369 | Msa1374240:CDS | 45.0% | |
| GATATGAGGATCCGTGTGAA+GGG | + | tig0019471:83351-83370 | Msa1374240:CDS | 45.0% | |
| TGTGAGCCTAAGAAGTTTGG+TGG | + | tig0019471:83531-83550 | Msa1374240:CDS | 45.0% | |
| CGCGGTCTGATCAAGATCAA+CGG | + | tig0019471:83237-83256 | Msa1374240:CDS | 50.0% | |
| TCAGGCTCAACCAGTTCGAT+TGG | - | tig0019471:83267-83286 | None:intergenic | 50.0% | |
| TGTCTTCCGAGAAGGAGGAT+TGG | - | tig0019471:83315-83334 | None:intergenic | 50.0% | |
| TCATATCAACGCCGGCGAAA+CGG | - | tig0019471:83338-83357 | None:intergenic | 50.0% | |
| ACGGATCCTCATATCAACGC+CGG | - | tig0019471:83346-83365 | None:intergenic | 50.0% | |
| TTCTTAGGCTCACAGCGTCT+AGG | - | tig0019471:83525-83544 | None:intergenic | 50.0% | |
| CGCTGTGAGCCTAAGAAGTT+TGG | + | tig0019471:83528-83547 | Msa1374240:CDS | 50.0% | |
| CCACGACCACCAAACTTCTT+AGG | - | tig0019471:83540-83559 | None:intergenic | 50.0% | |
| ! | CCTAAGAAGTTTGGTGGTCG+TGG | + | tig0019471:83537-83556 | Msa1374240:CDS | 50.0% |
| !! | CTTGCAGTGGGTTACCGCAA+CGG | - | tig0019471:83211-83230 | None:intergenic | 55.0% |
| CAACGGCTGTCCAATCGAAC+TGG | + | tig0019471:83254-83273 | Msa1374240:CDS | 55.0% | |
| AACGGTGTCTTCCGAGAAGG+AGG | - | tig0019471:83320-83339 | None:intergenic | 55.0% | |
| CGAAACGGTGTCTTCCGAGA+AGG | - | tig0019471:83323-83342 | None:intergenic | 55.0% | |
| !! | GTTTCGCCGGCGTTGATATG+AGG | + | tig0019471:83337-83356 | Msa1374240:CDS | 55.0% |
| ATGAGGATCCGTGTGAAGGG+AGG | + | tig0019471:83354-83373 | Msa1374240:CDS | 55.0% | |
| TGTGACCTCCTCCCTTCACA+CGG | - | tig0019471:83365-83384 | None:intergenic | 55.0% | |
| CCGCAACGGCGTTCTTCTTC+CGG | - | tig0019471:83197-83216 | None:intergenic | 60.0% | |
| CCGGAAGAAGAACGCCGTTG+CGG | + | tig0019471:83194-83213 | Msa1374240:CDS | 60.0% | |
| GCGGTAACCCACTGCAAGAG+AGG | + | tig0019471:83213-83232 | Msa1374240:CDS | 60.0% | |
| ACCCACTGCAAGAGAGGTCG+CGG | + | tig0019471:83219-83238 | Msa1374240:CDS | 60.0% | |
| ACCGCGACCTCTCTTGCAGT+GGG | - | tig0019471:83223-83242 | None:intergenic | 60.0% | |
| CTCGGAAGACACCGTTTCGC+CGG | + | tig0019471:83324-83343 | Msa1374240:CDS | 60.0% | |
| AGGATCCGTGTGAAGGGAGG+AGG | + | tig0019471:83357-83376 | Msa1374240:CDS | 60.0% | |
| GACCGCGACCTCTCTTGCAG+TGG | - | tig0019471:83224-83243 | None:intergenic | 65.0% | |
| GTGGTCGTGGTGCTCGTGCT+AGG | + | tig0019471:83550-83569 | Msa1374240:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019471 | gene | 83171 | 83593 | 83171 | ID=Msa1374240;Name=Msa1374240 |
| tig0019471 | mRNA | 83171 | 83593 | 83171 | ID=Msa1374240-mRNA-1;Parent=Msa1374240;Name=Msa1374240-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|140 |
| tig0019471 | exon | 83171 | 83593 | 83171 | ID=Msa1374240-mRNA-1:exon:3765;Parent=Msa1374240-mRNA-1 |
| tig0019471 | CDS | 83171 | 83593 | 83171 | ID=Msa1374240-mRNA-1:cds;Parent=Msa1374240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
