Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888810 | GAU48477.1 | 100.000 | 110 | 0 | 0 | 8 | 117 | 1 | 110 | 3.25e-70 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888810 | sp|Q9M352|RL362_ARATH | 80.909 | 110 | 21 | 0 | 8 | 117 | 1 | 110 | 7.85e-57 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888810 | A0A2Z6PQF7 | 100.000 | 110 | 0 | 0 | 8 | 117 | 1 | 110 | 1.55e-70 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0888810 | 0.825197 | 5.343802e-54 | -8.615850e-47 |
| Msa0002790 | Msa0888810 | 0.831414 | 1.691988e-55 | -8.615850e-47 |
| Msa0022970 | Msa0888810 | 0.814487 | 1.502628e-51 | -8.615850e-47 |
| Msa0032780 | Msa0888810 | 0.813414 | 2.590887e-51 | -8.615850e-47 |
| Msa0032810 | Msa0888810 | 0.833856 | 4.192890e-56 | -8.615850e-47 |
| Msa0033880 | Msa0888810 | 0.811274 | 7.598413e-51 | -8.615850e-47 |
| Msa0045730 | Msa0888810 | 0.848239 | 6.956054e-60 | -8.615850e-47 |
| Msa0047160 | Msa0888810 | 0.804978 | 1.666044e-49 | -8.615850e-47 |
| Msa0048180 | Msa0888810 | 0.821136 | 4.740685e-53 | -8.615850e-47 |
| Msa0049690 | Msa0888810 | 0.826584 | 2.503688e-54 | -8.615850e-47 |
| Msa0085780 | Msa0888810 | 0.803382 | 3.579696e-49 | -8.615850e-47 |
| Msa0116130 | Msa0888810 | 0.853428 | 2.405146e-61 | -8.615850e-47 |
| Msa0116670 | Msa0888810 | 0.850809 | 1.335936e-60 | -8.615850e-47 |
| Msa0118710 | Msa0888810 | 0.816826 | 4.526953e-52 | -8.615850e-47 |
| Msa0603320 | Msa0888810 | 0.808487 | 3.023350e-50 | -8.615850e-47 |
| Msa0604960 | Msa0888810 | 0.813860 | 2.066950e-51 | -8.615850e-47 |
| Msa0615580 | Msa0888810 | 0.847882 | 8.731089e-60 | -8.615850e-47 |
| Msa0619860 | Msa0888810 | 0.837704 | 4.442702e-57 | -8.615850e-47 |
| Msa0622750 | Msa0888810 | 0.824613 | 7.340856e-54 | -8.615850e-47 |
| Msa0623200 | Msa0888810 | 0.849938 | 2.344281e-60 | -8.615850e-47 |
| Msa0625570 | Msa0888810 | 0.827486 | 1.523613e-54 | -8.615850e-47 |
| Msa0631250 | Msa0888810 | 0.830545 | 2.764787e-55 | -8.615850e-47 |
| Msa0633570 | Msa0888810 | 0.818486 | 1.911842e-52 | -8.615850e-47 |
| Msa0666230 | Msa0888810 | 0.845186 | 4.750691e-59 | -8.615850e-47 |
| Msa0672100 | Msa0888810 | 0.802292 | 6.013136e-49 | -8.615850e-47 |
| Msa0698780 | Msa0888810 | 0.834334 | 3.183723e-56 | -8.615850e-47 |
| Msa0705800 | Msa0888810 | 0.856020 | 4.265308e-62 | -8.615850e-47 |
| Msa0706500 | Msa0888810 | 0.810559 | 1.085455e-50 | -8.615850e-47 |
| Msa0709280 | Msa0888810 | 0.802809 | 4.703523e-49 | -8.615850e-47 |
| Msa0712610 | Msa0888810 | 0.861629 | 8.973247e-64 | -8.615850e-47 |
| Msa0729200 | Msa0888810 | 0.902531 | 8.817967e-79 | -8.615850e-47 |
| Msa0766080 | Msa0888810 | 0.852921 | 3.361591e-61 | -8.615850e-47 |
| Msa0769590 | Msa0888810 | 0.900208 | 9.216841e-78 | -8.615850e-47 |
| Msa0781080 | Msa0888810 | 0.839501 | 1.525840e-57 | -8.615850e-47 |
| Msa0783630 | Msa0888810 | 0.845656 | 3.544394e-59 | -8.615850e-47 |
| Msa0785130 | Msa0888810 | 0.868019 | 8.909520e-66 | -8.615850e-47 |
| Msa0792420 | Msa0888810 | 0.850424 | 1.713069e-60 | -8.615850e-47 |
| Msa0806880 | Msa0888810 | 0.891086 | 5.474706e-74 | -8.615850e-47 |
| Msa0808800 | Msa0888810 | 0.809175 | 2.154957e-50 | -8.615850e-47 |
| Msa0817540 | Msa0888810 | 0.836738 | 7.848410e-57 | -8.615850e-47 |
| Msa0819210 | Msa0888810 | 0.800506 | 1.396086e-48 | -8.615850e-47 |
| Msa0123010 | Msa0888810 | 0.806816 | 6.846191e-50 | -8.615850e-47 |
| Msa0127850 | Msa0888810 | 0.812428 | 4.261285e-51 | -8.615850e-47 |
| Msa0133540 | Msa0888810 | 0.806976 | 6.333285e-50 | -8.615850e-47 |
| Msa0138890 | Msa0888810 | 0.832104 | 1.143280e-55 | -8.615850e-47 |
| Msa0146340 | Msa0888810 | 0.802612 | 5.166297e-49 | -8.615850e-47 |
| Msa0167480 | Msa0888810 | 0.813283 | 2.768370e-51 | -8.615850e-47 |
| Msa0173530 | Msa0888810 | 0.848894 | 4.581134e-60 | -8.615850e-47 |
| Msa0179030 | Msa0888810 | 0.813689 | 2.254239e-51 | -8.615850e-47 |
| Msa0181490 | Msa0888810 | 0.805879 | 1.078804e-49 | -8.615850e-47 |
| Msa0187930 | Msa0888810 | 0.802126 | 6.505507e-49 | -8.615850e-47 |
| Msa0189700 | Msa0888810 | 0.819197 | 1.317647e-52 | -8.615850e-47 |
| Msa0210330 | Msa0888810 | 0.804558 | 2.039494e-49 | -8.615850e-47 |
| Msa0210360 | Msa0888810 | 0.845468 | 3.984837e-59 | -8.615850e-47 |
| Msa0218720 | Msa0888810 | 0.813987 | 1.937704e-51 | -8.615850e-47 |
| Msa0218830 | Msa0888810 | 0.868199 | 7.796358e-66 | -8.615850e-47 |
| Msa0219120 | Msa0888810 | 0.827646 | 1.394708e-54 | -8.615850e-47 |
| Msa0221030 | Msa0888810 | 0.872700 | 2.599106e-67 | -8.615850e-47 |
| Msa0229150 | Msa0888810 | 0.821384 | 4.155511e-53 | -8.615850e-47 |
| Msa0230490 | Msa0888810 | 0.843739 | 1.164092e-58 | -8.615850e-47 |
| Msa0230520 | Msa0888810 | 0.801352 | 9.377651e-49 | -8.615850e-47 |
| Msa0231100 | Msa0888810 | 0.817777 | 2.765852e-52 | -8.615850e-47 |
| Msa0232010 | Msa0888810 | 0.808415 | 3.131973e-50 | -8.615850e-47 |
| Msa0232080 | Msa0888810 | 0.809364 | 1.963056e-50 | -8.615850e-47 |
| Msa0423750 | Msa0888810 | 0.832344 | 9.975737e-56 | -8.615850e-47 |
| Msa0443390 | Msa0888810 | 0.861161 | 1.245842e-63 | -8.615850e-47 |
| Msa0458370 | Msa0888810 | -0.807355 | 5.264369e-50 | -8.615850e-47 |
| Msa0481850 | Msa0888810 | 0.809128 | 2.205074e-50 | -8.615850e-47 |
| Msa0244780 | Msa0888810 | 0.809926 | 1.485868e-50 | -8.615850e-47 |
| Msa0257450 | Msa0888810 | 0.853292 | 2.631249e-61 | -8.615850e-47 |
| Msa0258850 | Msa0888810 | 0.814508 | 1.486329e-51 | -8.615850e-47 |
| Msa0262480 | Msa0888810 | 0.842686 | 2.221816e-58 | -8.615850e-47 |
| Msa0269180 | Msa0888810 | 0.820666 | 6.080410e-53 | -8.615850e-47 |
| Msa0289580 | Msa0888810 | 0.826044 | 3.366867e-54 | -8.615850e-47 |
| Msa0289610 | Msa0888810 | 0.827964 | 1.169188e-54 | -8.615850e-47 |
| Msa0297830 | Msa0888810 | 0.862339 | 5.436210e-64 | -8.615850e-47 |
| Msa0298200 | Msa0888810 | 0.814002 | 1.922889e-51 | -8.615850e-47 |
| Msa0300350 | Msa0888810 | 0.859681 | 3.494691e-63 | -8.615850e-47 |
| Msa0306690 | Msa0888810 | 0.818634 | 1.769088e-52 | -8.615850e-47 |
| Msa0310080 | Msa0888810 | 0.820270 | 7.493456e-53 | -8.615850e-47 |
| Msa0317910 | Msa0888810 | 0.814389 | 1.579858e-51 | -8.615850e-47 |
| Msa0327300 | Msa0888810 | 0.840204 | 1.001054e-57 | -8.615850e-47 |
| Msa0327330 | Msa0888810 | 0.821632 | 3.641824e-53 | -8.615850e-47 |
| Msa0335840 | Msa0888810 | 0.866276 | 3.209664e-65 | -8.615850e-47 |
| Msa0337670 | Msa0888810 | 0.840669 | 7.566929e-58 | -8.615850e-47 |
| Msa0348830 | Msa0888810 | 0.872321 | 3.478367e-67 | -8.615850e-47 |
| Msa0483110 | Msa0888810 | 0.835774 | 1.379334e-56 | -8.615850e-47 |
| Msa0526540 | Msa0888810 | 0.823294 | 1.496352e-53 | -8.615850e-47 |
| Msa0527150 | Msa0888810 | 0.809486 | 1.847479e-50 | -8.615850e-47 |
| Msa0531650 | Msa0888810 | 0.846602 | 1.959360e-59 | -8.615850e-47 |
| Msa0534750 | Msa0888810 | 0.841162 | 5.615369e-58 | -8.615850e-47 |
| Msa0546030 | Msa0888810 | 0.834720 | 2.545624e-56 | -8.615850e-47 |
| Msa0576940 | Msa0888810 | 0.819514 | 1.116238e-52 | -8.615850e-47 |
| Msa0581110 | Msa0888810 | 0.819719 | 1.002067e-52 | -8.615850e-47 |
| Msa0584030 | Msa0888810 | 0.850722 | 1.413327e-60 | -8.615850e-47 |
| Msa0590940 | Msa0888810 | 0.814486 | 1.503592e-51 | -8.615850e-47 |
| Msa0593700 | Msa0888810 | 0.815147 | 1.072938e-51 | -8.615850e-47 |
| Msa0867060 | Msa0888810 | 0.801861 | 7.373455e-49 | -8.615850e-47 |
| Msa0876170 | Msa0888810 | 0.848167 | 7.281049e-60 | -8.615850e-47 |
| Msa0881290 | Msa0888810 | 0.819090 | 1.393683e-52 | -8.615850e-47 |
| Msa0888810 | Msa0915540 | 0.874232 | 7.932548e-68 | -8.615850e-47 |
| Msa0888810 | Msa0945480 | 0.855122 | 7.795766e-62 | -8.615850e-47 |
| Msa0888810 | Msa0968440 | 0.805204 | 1.494709e-49 | -8.615850e-47 |
| Msa0888810 | Msa0994290 | 0.801793 | 7.613493e-49 | -8.615850e-47 |
| Msa0888810 | Msa1019240 | 0.846754 | 1.780227e-59 | -8.615850e-47 |
| Msa0888810 | Msa1019260 | 0.838705 | 2.453425e-57 | -8.615850e-47 |
| Msa0888810 | Msa1021120 | 0.839701 | 1.353440e-57 | -8.615850e-47 |
| Msa0888810 | Msa1037290 | 0.810424 | 1.160690e-50 | -8.615850e-47 |
| Msa0888810 | Msa1039520 | 0.882840 | 7.430090e-71 | -8.615850e-47 |
| Msa0888810 | Msa1042780 | 0.820886 | 5.411833e-53 | -8.615850e-47 |
| Msa0888810 | Msa1072710 | 0.859266 | 4.659002e-63 | -8.615850e-47 |
| Msa0888810 | Msa1078870 | 0.818578 | 1.822241e-52 | -8.615850e-47 |
| Msa0888810 | Msa1080350 | 0.834041 | 3.768588e-56 | -8.615850e-47 |
| Msa0888810 | Msa1085470 | 0.830071 | 3.609569e-55 | -8.615850e-47 |
| Msa0888810 | Msa1088490 | 0.834266 | 3.311281e-56 | -8.615850e-47 |
| Msa0888810 | Msa1094380 | 0.837218 | 5.918644e-57 | -8.615850e-47 |
| Msa0888810 | Msa1104140 | 0.802704 | 4.945509e-49 | -8.615850e-47 |
| Msa0888810 | Msa1104210 | 0.833977 | 3.910754e-56 | -8.615850e-47 |
| Msa0888810 | Msa1123830 | 0.853325 | 2.574967e-61 | -8.615850e-47 |
| Msa0888810 | Msa1125860 | 0.828145 | 1.058083e-54 | -8.615850e-47 |
| Msa0888810 | Msa1126060 | 0.824802 | 6.625584e-54 | -8.615850e-47 |
| Msa0888810 | Msa1126470 | 0.809939 | 1.476417e-50 | -8.615850e-47 |
| Msa0888810 | Msa1126520 | 0.809389 | 1.938779e-50 | -8.615850e-47 |
| Msa0888810 | Msa1126830 | 0.821998 | 2.995758e-53 | -8.615850e-47 |
| Msa0888810 | Msa1165780 | 0.841029 | 6.087669e-58 | -8.615850e-47 |
| Msa0888810 | Msa1166870 | 0.840554 | 8.109258e-58 | -8.615850e-47 |
| Msa0888810 | Msa1179980 | 0.801891 | 7.267932e-49 | -8.615850e-47 |
| Msa0888810 | Msa1195300 | 0.806288 | 8.847176e-50 | -8.615850e-47 |
| Msa0888810 | Msa1208020 | 0.861952 | 7.145473e-64 | -8.615850e-47 |
| Msa0888810 | Msa1215820 | 0.822686 | 2.074597e-53 | -8.615850e-47 |
| Msa0888810 | Msa1227690 | 0.800431 | 1.445614e-48 | -8.615850e-47 |
| Msa0888810 | Msa1241190 | 0.816585 | 5.125553e-52 | -8.615850e-47 |
| Msa0888810 | Msa1256840 | 0.840805 | 6.970659e-58 | -8.615850e-47 |
| Msa0888810 | Msa1257510 | 0.809067 | 2.272079e-50 | -8.615850e-47 |
| Msa0888810 | Msa1260530 | 0.809116 | 2.218296e-50 | -8.615850e-47 |
| Msa0888810 | Msa1265630 | 0.806447 | 8.189146e-50 | -8.615850e-47 |
| Msa0888810 | Msa1266060 | 0.802175 | 6.356345e-49 | -8.615850e-47 |
| Msa0888810 | Msa1270620 | 0.801535 | 8.602028e-49 | -8.615850e-47 |
| Msa0888810 | Msa1270690 | 0.801568 | 8.470083e-49 | -8.615850e-47 |
| Msa0888810 | Msa1311400 | 0.820637 | 6.174300e-53 | -8.615850e-47 |
| Msa0888810 | Msa1321790 | 0.831798 | 1.360629e-55 | -8.615850e-47 |
| Msa0888810 | Msa1329300 | 0.819087 | 1.395916e-52 | -8.615850e-47 |
| Msa0888810 | Msa1331250 | 0.821880 | 3.190543e-53 | -8.615850e-47 |
| Msa0888810 | Msa1331710 | 0.824445 | 8.042671e-54 | -8.615850e-47 |
| Msa0888810 | Msa1332250 | 0.841596 | 4.318509e-58 | -8.615850e-47 |
| Msa0888810 | Msa1338190 | 0.906380 | 1.579355e-80 | -8.615850e-47 |
| Msa0888810 | Msa1343260 | 0.836286 | 1.023060e-56 | -8.615850e-47 |
| Msa0888810 | Msa1344950 | 0.802047 | 6.751018e-49 | -8.615850e-47 |
| Msa0888810 | Msa1349570 | 0.851467 | 8.707663e-61 | -8.615850e-47 |
| Msa0888810 | Msa1356790 | 0.869490 | 2.977883e-66 | -8.615850e-47 |
| Msa0888810 | Msa1362790 | 0.878504 | 2.662310e-69 | -8.615850e-47 |
| Msa0888810 | Msa1363330 | 0.819978 | 8.741568e-53 | -8.615850e-47 |
| Msa0888810 | Msa1366180 | 0.816355 | 5.772211e-52 | -8.615850e-47 |
| Msa0888810 | Msa1368920 | 0.808017 | 3.807350e-50 | -8.615850e-47 |
| Msa0888810 | Msa1369190 | 0.889599 | 2.097711e-73 | -8.615850e-47 |
| Msa0888810 | Msa1374240 | 0.836852 | 7.337449e-57 | -8.615850e-47 |
| Msa0888810 | Msa1386600 | 0.819493 | 1.128115e-52 | -8.615850e-47 |
| Msa0888810 | Msa1387410 | 0.828068 | 1.104140e-54 | -8.615850e-47 |
| Msa0888810 | Msa1392590 | 0.836727 | 7.900817e-57 | -8.615850e-47 |
| Msa0888810 | Msa1397100 | 0.802602 | 5.191077e-49 | -8.615850e-47 |
| Msa0888810 | Msa1403910 | 0.811178 | 7.970503e-51 | -8.615850e-47 |
| Msa0888810 | Msa1413260 | 0.828529 | 8.547906e-55 | -8.615850e-47 |
| Msa0888810 | Msa1413500 | 0.889207 | 2.978388e-73 | -8.615850e-47 |
| Msa0888810 | Msa1418770 | 0.855218 | 7.311825e-62 | -8.615850e-47 |
| Msa0888810 | Msa1425670 | 0.830663 | 2.586305e-55 | -8.615850e-47 |
| Msa0888810 | Msa1426120 | 0.829930 | 3.906262e-55 | -8.615850e-47 |
| Msa0888810 | Msa1426370 | 0.855093 | 7.948368e-62 | -8.615850e-47 |
| Msa0888810 | Msa1426490 | 0.869498 | 2.961064e-66 | -8.615850e-47 |
| Msa0888810 | Msa1427560 | 0.826782 | 2.245890e-54 | -8.615850e-47 |
| Msa0888810 | Msa1437280 | 0.831112 | 2.007771e-55 | -8.615850e-47 |
| Msa0888810 | Msa1437860 | 0.803207 | 3.891317e-49 | -8.615850e-47 |
| Msa0888810 | Msa1450280 | 0.823289 | 1.500352e-53 | -8.615850e-47 |
| Msa0888810 | Msa1456050 | 0.852821 | 3.589088e-61 | -8.615850e-47 |
| Msa0888810 | Msa1462860 | 0.845033 | 5.227259e-59 | -8.615850e-47 |
| Msa0888810 | Msa1465260 | 0.807769 | 4.299237e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888810 | MtrunA17_Chr1g0203071 | 96.396 | 111 | 3 | 1 | 8 | 117 | 1 | 111 | 2.78e-71 | 208 |
| Msa0888810 | MtrunA17_Chr6g0470561 | 98.198 | 111 | 1 | 1 | 8 | 117 | 1 | 111 | 7.98e-71 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0888810 | AT3G53740.4 | 80.909 | 110 | 21 | 0 | 8 | 117 | 1 | 110 | 7.98e-58 | 174 |
| Msa0888810 | AT3G53740.2 | 80.909 | 110 | 21 | 0 | 8 | 117 | 1 | 110 | 7.98e-58 | 174 |
| Msa0888810 | AT3G53740.3 | 80.909 | 110 | 21 | 0 | 8 | 117 | 1 | 110 | 7.98e-58 | 174 |
| Msa0888810 | AT5G02450.1 | 82.692 | 104 | 18 | 0 | 14 | 117 | 3 | 106 | 4.20e-56 | 170 |
| Msa0888810 | AT2G37600.1 | 83.654 | 104 | 16 | 1 | 15 | 117 | 8 | 111 | 2.52e-55 | 168 |
| Msa0888810 | AT2G37600.2 | 83.654 | 104 | 16 | 1 | 15 | 117 | 8 | 111 | 2.52e-55 | 168 |
| Msa0888810 | AT3G53740.1 | 72.727 | 110 | 21 | 1 | 8 | 117 | 1 | 101 | 1.48e-48 | 150 |
Find 56 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTCTTGGCACGTTTA+TGG | 0.140365 | 6_1:-54180462 | None:intergenic |
| CTTCTTCTTGGCACGTTTAT+GGG | 0.210182 | 6_1:-54180461 | None:intergenic |
| TACCTGCGGTAGATTGAATT+AGG | 0.234420 | 6_1:-54177506 | None:intergenic |
| TTATTTCATTCCATGTTAAC+TGG | 0.291847 | 6_1:+54180667 | Msa0888810:three_prime_UTR |
| CATCTCCTCACGCTTCTTCT+TGG | 0.294580 | 6_1:-54180473 | None:intergenic |
| CCTTTACGGCTAGAGGGTTT+AGG | 0.305250 | 6_1:-54177779 | None:intergenic |
| TTGCGCAGGGCTGGTGGAGC+AGG | 0.374917 | 6_1:+54180620 | Msa0888810:intron |
| ATAAATCATATTGTCAAAAC+AGG | 0.381439 | 6_1:-54180761 | None:intergenic |
| ATTCTTAACATTACAACTAC+AGG | 0.391885 | 6_1:-54181022 | None:intergenic |
| TAATGTTAAGAATGGGTGAT+TGG | 0.398603 | 6_1:+54181032 | Msa0888810:three_prime_UTR |
| CTAAACCCTCTAGCCGTAAA+GGG | 0.402747 | 6_1:+54177780 | Msa0888810:CDS |
| AAGAGCAATGTTGGATAGAA+AGG | 0.426788 | 6_1:-54180834 | None:intergenic |
| ATATGGCCTATGCCTCAATA+TGG | 0.439613 | 6_1:+54180956 | Msa0888810:three_prime_UTR |
| ATGGGTTCCGAGCTTTCTCT+TGG | 0.449681 | 6_1:-54180443 | None:intergenic |
| GGCGCCGAAGCAGCCAAGTA+CGG | 0.452682 | 6_1:+54177703 | Msa0888810:CDS |
| GAAGAGCAAACCTCATCTTT+CGG | 0.452731 | 6_1:-54180507 | None:intergenic |
| AACCTCATCCGCGAGGTAGC+TGG | 0.486512 | 6_1:+54180349 | Msa0888810:CDS |
| CCTAAACCCTCTAGCCGTAA+AGG | 0.488599 | 6_1:+54177779 | Msa0888810:CDS |
| AGACCCGTACTTGGCTGCTT+CGG | 0.489391 | 6_1:-54177707 | None:intergenic |
| GCGCCGAAGCAGCCAAGTAC+GGG | 0.490664 | 6_1:+54177704 | Msa0888810:CDS |
| ATCACTGAATTGCTGAAGGT+TGG | 0.491376 | 6_1:+54180394 | Msa0888810:CDS |
| TGAAGGTTGGAAAGGATAAG+AGG | 0.498071 | 6_1:+54180407 | Msa0888810:CDS |
| TGTAGTTGTAATGTTAAGAA+TGG | 0.498103 | 6_1:+54181024 | Msa0888810:three_prime_UTR |
| TGATTTATGAAAAGTACCAT+TGG | 0.498649 | 6_1:+54180776 | Msa0888810:three_prime_UTR |
| GCAAGCGTGTGCACTTTGTA+AGG | 0.505489 | 6_1:+54180326 | Msa0888810:CDS |
| AGCCAGCTACCTCGCGGATG+AGG | 0.509753 | 6_1:-54180351 | None:intergenic |
| TCAGTGATACGCTTCTCATA+AGG | 0.516197 | 6_1:-54180379 | None:intergenic |
| GCACCGCCATATTGAGGCAT+AGG | 0.516372 | 6_1:-54180962 | None:intergenic |
| CAATTTGCACCGCCATATTG+AGG | 0.518900 | 6_1:-54180968 | None:intergenic |
| TAACAACGCAAGAGCAATGT+TGG | 0.522284 | 6_1:-54180843 | None:intergenic |
| TCATACCCCTTTACGGCTAG+AGG | 0.525898 | 6_1:-54177786 | None:intergenic |
| TGTTGTTACTAAGAAGGAGT+TGG | 0.545489 | 6_1:+54177754 | Msa0888810:CDS |
| AGAGCAATGTTGGATAGAAA+GGG | 0.548129 | 6_1:-54180833 | None:intergenic |
| GGGTCATGTTGTTACTAAGA+AGG | 0.556387 | 6_1:+54177748 | Msa0888810:CDS |
| TGAATTGCTGAAGGTTGGAA+AGG | 0.563716 | 6_1:+54180399 | Msa0888810:CDS |
| CATTATCATAAGCAATGTCA+AGG | 0.568912 | 6_1:-54180891 | None:intergenic |
| AAAGTTGCCAAGAGAAAGCT+CGG | 0.571574 | 6_1:+54180436 | Msa0888810:CDS |
| AAAACTTGTCCTTCAAAACA+TGG | 0.571599 | 6_1:-54180696 | None:intergenic |
| CATACCCCTTTACGGCTAGA+GGG | 0.582186 | 6_1:-54177785 | None:intergenic |
| ACCCTAATTCAATCTACCGC+AGG | 0.584160 | 6_1:+54177504 | None:intergenic |
| AATGTCAAGGTTGCAGACAA+AGG | 0.597524 | 6_1:-54180878 | None:intergenic |
| CCTCATCTTTCGGAGGACGT+TGG | 0.608911 | 6_1:-54180497 | None:intergenic |
| GTAGTTGTAATGTTAAGAAT+GGG | 0.609015 | 6_1:+54181025 | Msa0888810:three_prime_UTR |
| ATGGGTACATCCAGTTAACA+TGG | 0.610367 | 6_1:-54180677 | None:intergenic |
| GAAGGTTGGAAAGGATAAGA+GGG | 0.613741 | 6_1:+54180408 | Msa0888810:CDS |
| GCGTATCACTGAATTGCTGA+AGG | 0.627654 | 6_1:+54180390 | Msa0888810:CDS |
| CATAAAACAGAATAATCCAA+TGG | 0.631505 | 6_1:-54180792 | None:intergenic |
| AAACTTGTCCTTCAAAACAT+GGG | 0.648003 | 6_1:-54180695 | None:intergenic |
| TTCTTAACATTACAACTACA+GGG | 0.655971 | 6_1:-54181021 | None:intergenic |
| CCAACGTCCTCCGAAAGATG+AGG | 0.657638 | 6_1:+54180497 | Msa0888810:CDS |
| TAAACCCTCTAGCCGTAAAG+GGG | 0.659101 | 6_1:+54177781 | Msa0888810:CDS |
| TGGCCTATGCCTCAATATGG+CGG | 0.673730 | 6_1:+54180959 | Msa0888810:three_prime_UTR |
| GAGCAAACCTCATCTTTCGG+AGG | 0.683152 | 6_1:-54180504 | None:intergenic |
| GTGCAAAGCCAGCTACCTCG+CGG | 0.704628 | 6_1:-54180357 | None:intergenic |
| ACGTGCCAAGAAGAAGCGTG+AGG | 0.711062 | 6_1:+54180468 | Msa0888810:CDS |
| TGTAAGGAACCTCATCCGCG+AGG | 0.767870 | 6_1:+54180342 | Msa0888810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAAAAGACATTATTT+GGG | + | chr6_1:54180093-54180112 | Msa0888810:intron | 10.0% |
| !!! | GGTATGATTTTTTATTTTTA+GGG | + | chr6_1:54177802-54177821 | Msa0888810:intron | 15.0% |
| !!! | TTTTAGGTTTAGTTAATTTT+TGG | + | chr6_1:54177908-54177927 | Msa0888810:intron | 15.0% |
| !!! | TTTAGGTTTAGTTAATTTTT+GGG | + | chr6_1:54177909-54177928 | Msa0888810:intron | 15.0% |
| !!! | TTTTAATTTTCATTTGTGTT+TGG | + | chr6_1:54177956-54177975 | Msa0888810:intron | 15.0% |
| !!! | TTTCAAGTTTAGTTAATTTT+TGG | + | chr6_1:54178261-54178280 | Msa0888810:intron | 15.0% |
| !!! | TTCAAGTTTAGTTAATTTTT+GGG | + | chr6_1:54178262-54178281 | Msa0888810:intron | 15.0% |
| !!! | AGAGTAAAATTAAATTGTTT+TGG | + | chr6_1:54178648-54178667 | Msa0888810:intron | 15.0% |
| !! | TGTTTAAAAAAAAGTAATTG+TGG | - | chr6_1:54179351-54179370 | None:intergenic | 15.0% |
| !! | AAAACGACATATTAATAAAA+TGG | + | chr6_1:54179568-54179587 | Msa0888810:intron | 15.0% |
| !!! | TTTTTTGTTTTTTAAGTAAC+CGG | + | chr6_1:54179737-54179756 | Msa0888810:intron | 15.0% |
| !! | TAAGAAAATTAACGAAAATA+TGG | - | chr6_1:54180076-54180095 | None:intergenic | 15.0% |
| !! | CTTATTTAAAAGACATTATT+TGG | + | chr6_1:54180092-54180111 | Msa0888810:intron | 15.0% |
| !!! | TTATTATTAAACTTGTTACT+TGG | + | chr6_1:54180564-54180583 | Msa0888810:intron | 15.0% |
| !! | AAATGAATCTAAGAGAAAAA+TGG | - | chr6_1:54177608-54177627 | None:intergenic | 20.0% |
| !!! | TTCATTTTCAACAATGAATT+TGG | + | chr6_1:54177621-54177640 | Msa0888810:intron | 20.0% |
| !!! | TCATTTTCAACAATGAATTT+GGG | + | chr6_1:54177622-54177641 | Msa0888810:intron | 20.0% |
| !!! | TTTTGACTGATTTATGAATT+TGG | + | chr6_1:54177651-54177670 | Msa0888810:intron | 20.0% |
| !!! | TTTGACTGATTTATGAATTT+GGG | + | chr6_1:54177652-54177671 | Msa0888810:intron | 20.0% |
| !!! | AATTTGGGATTTTTTGATTT+TGG | + | chr6_1:54177667-54177686 | Msa0888810:intron | 20.0% |
| !!! | ATTTGGGATTTTTTGATTTT+GGG | + | chr6_1:54177668-54177687 | Msa0888810:intron | 20.0% |
| !!! | GGGTATGATTTTTTATTTTT+AGG | + | chr6_1:54177801-54177820 | Msa0888810:intron | 20.0% |
| !!! | GATAAATGAGAATCTATTTT+AGG | + | chr6_1:54177892-54177911 | Msa0888810:intron | 20.0% |
| !! | CAATAATCTGAGTAAATTAA+TGG | + | chr6_1:54178016-54178035 | Msa0888810:intron | 20.0% |
| !! | TCACTAATATTTAAATACCT+TGG | - | chr6_1:54178185-54178204 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTGGTTAATGTT+TGG | + | chr6_1:54178212-54178231 | Msa0888810:intron | 20.0% |
| !! | GTTATTAATTGTAATAGTGA+AGG | + | chr6_1:54178344-54178363 | Msa0888810:intron | 20.0% |
| !!! | AGTTTAGTTTTAAGTTTTGT+TGG | + | chr6_1:54178449-54178468 | Msa0888810:intron | 20.0% |
| !!! | ATTGTTCATTTTTCATCTAA+TGG | - | chr6_1:54178528-54178547 | None:intergenic | 20.0% |
| !!! | GAGGAATTTTTTTTATAGTT+AGG | + | chr6_1:54178549-54178568 | Msa0888810:intron | 20.0% |
| !!! | TTTACAATAACATGGAATTT+TGG | + | chr6_1:54178982-54179001 | Msa0888810:intron | 20.0% |
| !!! | TGAAACTATTTTGTGATTTT+TGG | + | chr6_1:54179036-54179055 | Msa0888810:intron | 20.0% |
| !! | TATACATGAATTTGTAAGAT+TGG | - | chr6_1:54179189-54179208 | None:intergenic | 20.0% |
| !!! | GTTTATTGATTAAGTAATTG+TGG | - | chr6_1:54179377-54179396 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTTTAAGTAACC+GGG | + | chr6_1:54179738-54179757 | Msa0888810:intron | 20.0% |
| !! | TATATTACATAGTACTATAG+TGG | - | chr6_1:54180122-54180141 | None:intergenic | 20.0% |
| !! | ATAGTACTATGTAATATATC+TGG | + | chr6_1:54180124-54180143 | Msa0888810:intron | 20.0% |
| !! | TAATGAAATTGTTGATATTC+TGG | + | chr6_1:54180236-54180255 | Msa0888810:intron | 20.0% |
| !! | AATGAAATTGTTGATATTCT+GGG | + | chr6_1:54180237-54180256 | Msa0888810:intron | 20.0% |
| !! | AGTTTAATAATAAAACACCT+GGG | - | chr6_1:54180557-54180576 | None:intergenic | 20.0% |
| !! | AAGTTTAATAATAAAACACC+TGG | - | chr6_1:54180558-54180577 | None:intergenic | 20.0% |
| !! | ATAAATCATATTGTCAAAAC+AGG | - | chr6_1:54180764-54180783 | None:intergenic | 20.0% |
| !!! | AAACAAAGCCTTATTTTTTA+TGG | + | chr6_1:54180914-54180933 | Msa0888810:three_prime_UTR | 20.0% |
| !! | CATTGAAACCATAAAAAATA+AGG | - | chr6_1:54180925-54180944 | None:intergenic | 20.0% |
| ! | ATGAAATTGATTGAAGGAAT+TGG | - | chr6_1:54177563-54177582 | None:intergenic | 25.0% |
| !! | ATGATGATGAAATTGATTGA+AGG | - | chr6_1:54177569-54177588 | None:intergenic | 25.0% |
| !!! | ATTTTTTGATTTTGGGTTTC+AGG | + | chr6_1:54177675-54177694 | Msa0888810:intron | 25.0% |
| ! | TAAAAAATCATACCCCTTTA+CGG | - | chr6_1:54177796-54177815 | None:intergenic | 25.0% |
| !! | GTTATTGTTCATTTTGTGTT+TGG | + | chr6_1:54177870-54177889 | Msa0888810:intron | 25.0% |
| !!! | TTAATTTTTGGGTATAGTGA+TGG | + | chr6_1:54177920-54177939 | Msa0888810:intron | 25.0% |
| !!! | GTTTTTTATTGAAAATGCCA+AGG | + | chr6_1:54178165-54178184 | Msa0888810:intron | 25.0% |
| !! | TTTGGTTAATGTTTGGAATT+TGG | + | chr6_1:54178219-54178238 | Msa0888810:intron | 25.0% |
| ! | AGATGAAAAATGAACAATTG+AGG | + | chr6_1:54178530-54178549 | Msa0888810:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | - | chr6_1:54178575-54178594 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr6_1:54178576-54178595 | None:intergenic | 25.0% |
| ! | CATCAAATCACATAACAAAT+GGG | - | chr6_1:54178933-54178952 | None:intergenic | 25.0% |
| ! | ACATCAAATCACATAACAAA+TGG | - | chr6_1:54178934-54178953 | None:intergenic | 25.0% |
| ! | AGTTTCAATTGAAATCCAAA+GGG | - | chr6_1:54179023-54179042 | None:intergenic | 25.0% |
| ! | TAGTTTCAATTGAAATCCAA+AGG | - | chr6_1:54179024-54179043 | None:intergenic | 25.0% |
| !!! | CTATTTTGTGATTTTTGGAA+TGG | + | chr6_1:54179041-54179060 | Msa0888810:intron | 25.0% |
| !!! | TCTTTTTTCTTGGTTGTTTT+GGG | - | chr6_1:54179545-54179564 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTCTTGGTTGTTT+TGG | - | chr6_1:54179546-54179565 | None:intergenic | 25.0% |
| ! | TTGACAATTAATGAGATTAG+TGG | + | chr6_1:54179616-54179635 | Msa0888810:intron | 25.0% |
| ! | TGACAATTAATGAGATTAGT+GGG | + | chr6_1:54179617-54179636 | Msa0888810:intron | 25.0% |
| ! | TAACTCAAATACATTCAATG+AGG | - | chr6_1:54180014-54180033 | None:intergenic | 25.0% |
| !! | ATATATCTGGAGTCAAAATA+TGG | + | chr6_1:54180137-54180156 | Msa0888810:intron | 25.0% |
| ! | TTATCATTGATACTGTTCTT+TGG | + | chr6_1:54180265-54180284 | Msa0888810:intron | 25.0% |
| !!! | TTTTGTTTATTATACATCCC+AGG | + | chr6_1:54180537-54180556 | Msa0888810:intron | 25.0% |
| !!! | TATCTTTTTAATTTTGCGCA+GGG | + | chr6_1:54180607-54180626 | Msa0888810:intron | 25.0% |
| ! | TTATTTCATTCCATGTTAAC+TGG | + | chr6_1:54180667-54180686 | Msa0888810:three_prime_UTR | 25.0% |
| !!! | TGATTTATGAAAAGTACCAT+TGG | + | chr6_1:54180776-54180795 | Msa0888810:three_prime_UTR | 25.0% |
| ! | CATAAAACAGAATAATCCAA+TGG | - | chr6_1:54180795-54180814 | None:intergenic | 25.0% |
| ! | TTCTTAACATTACAACTACA+GGG | - | chr6_1:54181024-54181043 | None:intergenic | 25.0% |
| ! | ATTCTTAACATTACAACTAC+AGG | - | chr6_1:54181025-54181044 | None:intergenic | 25.0% |
| ! | TGTAGTTGTAATGTTAAGAA+TGG | + | chr6_1:54181024-54181043 | Msa0888810:three_prime_UTR | 25.0% |
| ! | GTAGTTGTAATGTTAAGAAT+GGG | + | chr6_1:54181025-54181044 | Msa0888810:three_prime_UTR | 25.0% |
| ATCTAAGAGAAAAATGGTAG+AGG | - | chr6_1:54177602-54177621 | None:intergenic | 30.0% | |
| ! | TCTTTTTGTTGGATTGAACA+AGG | + | chr6_1:54177727-54177746 | Msa0888810:CDS | 30.0% |
| ! | CTTTTTGTTGGATTGAACAA+GGG | + | chr6_1:54177728-54177747 | Msa0888810:CDS | 30.0% |
| TTAGATATTAGTGATGCGTT+TGG | + | chr6_1:54177826-54177845 | Msa0888810:intron | 30.0% | |
| ! | TCGTCTTTTGAGCTAATTTT+TGG | + | chr6_1:54178087-54178106 | Msa0888810:intron | 30.0% |
| ! | CGTCTTTTGAGCTAATTTTT+GGG | + | chr6_1:54178088-54178107 | Msa0888810:intron | 30.0% |
| !!! | GTGACTGTTTGTTTTGATTT+TGG | + | chr6_1:54178201-54178220 | Msa0888810:intron | 30.0% |
| ! | GTTTAGATTTTGCTTTGTGT+TGG | + | chr6_1:54178395-54178414 | Msa0888810:intron | 30.0% |
| !!! | AGTCTTTATTTTTTGCCCTT+TGG | + | chr6_1:54179005-54179024 | Msa0888810:intron | 30.0% |
| TTAAACTATAGTGCTAGTCA+AGG | + | chr6_1:54179077-54179096 | Msa0888810:intron | 30.0% | |
| CATGAATTTGTAAGATTGGT+AGG | - | chr6_1:54179185-54179204 | None:intergenic | 30.0% | |
| ! | TCGTTTTGCTTCTTTTTTCT+TGG | - | chr6_1:54179555-54179574 | None:intergenic | 30.0% |
| ! | AAGCTGTTGCATTTTCATAT+AGG | - | chr6_1:54180039-54180058 | None:intergenic | 30.0% |
| ATATGAAAATGCAACAGCTT+TGG | + | chr6_1:54180039-54180058 | Msa0888810:intron | 30.0% | |
| !!! | CTATCTTTTTAATTTTGCGC+AGG | + | chr6_1:54180606-54180625 | Msa0888810:intron | 30.0% |
| AAACTTGTCCTTCAAAACAT+GGG | - | chr6_1:54180698-54180717 | None:intergenic | 30.0% | |
| AAAACTTGTCCTTCAAAACA+TGG | - | chr6_1:54180699-54180718 | None:intergenic | 30.0% | |
| CATTATCATAAGCAATGTCA+AGG | - | chr6_1:54180894-54180913 | None:intergenic | 30.0% | |
| ! | TCAATGCTTTTGTAGTGATA+TGG | + | chr6_1:54180939-54180958 | Msa0888810:three_prime_UTR | 30.0% |
| TAATGTTAAGAATGGGTGAT+TGG | + | chr6_1:54181032-54181051 | Msa0888810:three_prime_UTR | 30.0% | |
| AGAGAGAGAAAATTAGGGTT+TGG | - | chr6_1:54177534-54177553 | None:intergenic | 35.0% | |
| AGAGGAGAGAGAGAAAATTA+GGG | - | chr6_1:54177539-54177558 | None:intergenic | 35.0% | |
| AAGAGGAGAGAGAGAAAATT+AGG | - | chr6_1:54177540-54177559 | None:intergenic | 35.0% | |
| TTGATTGAAGGAATTGGAAG+AGG | - | chr6_1:54177557-54177576 | None:intergenic | 35.0% | |
| !!! | GATTTTGGGTTTCAGGAAAA+TGG | + | chr6_1:54177682-54177701 | Msa0888810:intron | 35.0% |
| TGTTGTTACTAAGAAGGAGT+TGG | + | chr6_1:54177754-54177773 | Msa0888810:CDS | 35.0% | |
| ! | CATTTTCGTTGCAATGCAAA+TGG | + | chr6_1:54178495-54178514 | Msa0888810:intron | 35.0% |
| ! | TTTTATAGTTAGGCCCTGTT+TGG | + | chr6_1:54178559-54178578 | Msa0888810:intron | 35.0% |
| ! | GGCACTGTTTTACAATAACA+TGG | + | chr6_1:54178974-54178993 | Msa0888810:intron | 35.0% |
| ! | AATGAGATTAGTGGGTGTAT+TGG | + | chr6_1:54179625-54179644 | Msa0888810:intron | 35.0% |
| ! | ATGAGATTAGTGGGTGTATT+GGG | + | chr6_1:54179626-54179645 | Msa0888810:intron | 35.0% |
| ! | TCTGTTTTATGCTAGAAACG+AGG | + | chr6_1:54180804-54180823 | Msa0888810:three_prime_UTR | 35.0% |
| AGAGCAATGTTGGATAGAAA+GGG | - | chr6_1:54180836-54180855 | None:intergenic | 35.0% | |
| AAGAGCAATGTTGGATAGAA+AGG | - | chr6_1:54180837-54180856 | None:intergenic | 35.0% | |
| ! | ATTAGGGTTTGGTTTACCTG+CGG | - | chr6_1:54177523-54177542 | None:intergenic | 40.0% |
| GGGTCATGTTGTTACTAAGA+AGG | + | chr6_1:54177748-54177767 | Msa0888810:CDS | 40.0% | |
| !!! | GAGCTAATTTTTGGGTTCAG+AGG | + | chr6_1:54178096-54178115 | Msa0888810:intron | 40.0% |
| GAGATTAGTGATGCATTTGC+AGG | + | chr6_1:54178289-54178308 | Msa0888810:intron | 40.0% | |
| GATCGTTTGTGAGACTGTTT+GGG | - | chr6_1:54178871-54178890 | None:intergenic | 40.0% | |
| AGATCGTTTGTGAGACTGTT+TGG | - | chr6_1:54178872-54178891 | None:intergenic | 40.0% | |
| !! | CACATAACAAATGGGCTGTT+TGG | - | chr6_1:54178925-54178944 | None:intergenic | 40.0% |
| ! | TGAGTTGAGTTGTAGAATGC+AGG | + | chr6_1:54178953-54178972 | Msa0888810:intron | 40.0% |
| ACAAAATCGAGATCCTATGC+AGG | + | chr6_1:54179103-54179122 | Msa0888810:intron | 40.0% | |
| AGGGTTACAAGATCGTGAAT+CGG | + | chr6_1:54179134-54179153 | Msa0888810:intron | 40.0% | |
| ! | GGGTGTATTGGGAAAGTTTT+CGG | + | chr6_1:54179637-54179656 | Msa0888810:intron | 40.0% |
| TTGGTCCTAGTCCTAATATG+CGG | + | chr6_1:54180284-54180303 | Msa0888810:intron | 40.0% | |
| !!! | GCTTGCTAGTTTTCTGTTCA+AGG | - | chr6_1:54180312-54180331 | None:intergenic | 40.0% |
| TCAGTGATACGCTTCTCATA+AGG | - | chr6_1:54180382-54180401 | None:intergenic | 40.0% | |
| ATCACTGAATTGCTGAAGGT+TGG | + | chr6_1:54180394-54180413 | Msa0888810:CDS | 40.0% | |
| TGAATTGCTGAAGGTTGGAA+AGG | + | chr6_1:54180399-54180418 | Msa0888810:CDS | 40.0% | |
| TGAAGGTTGGAAAGGATAAG+AGG | + | chr6_1:54180407-54180426 | Msa0888810:CDS | 40.0% | |
| GAAGGTTGGAAAGGATAAGA+GGG | + | chr6_1:54180408-54180427 | Msa0888810:CDS | 40.0% | |
| AAAGTTGCCAAGAGAAAGCT+CGG | + | chr6_1:54180436-54180455 | Msa0888810:CDS | 40.0% | |
| CTTCTTCTTGGCACGTTTAT+GGG | - | chr6_1:54180464-54180483 | None:intergenic | 40.0% | |
| GAAGAGCAAACCTCATCTTT+CGG | - | chr6_1:54180510-54180529 | None:intergenic | 40.0% | |
| !!! | TTTTTAATTTTGCGCAGGGC+TGG | + | chr6_1:54180611-54180630 | Msa0888810:intron | 40.0% |
| ATGGGTACATCCAGTTAACA+TGG | - | chr6_1:54180680-54180699 | None:intergenic | 40.0% | |
| !! | TGGATGTACCCATGTTTTGA+AGG | + | chr6_1:54180687-54180706 | Msa0888810:three_prime_UTR | 40.0% |
| TAACAACGCAAGAGCAATGT+TGG | - | chr6_1:54180846-54180865 | None:intergenic | 40.0% | |
| AATGTCAAGGTTGCAGACAA+AGG | - | chr6_1:54180881-54180900 | None:intergenic | 40.0% | |
| ATATGGCCTATGCCTCAATA+TGG | + | chr6_1:54180956-54180975 | Msa0888810:three_prime_UTR | 40.0% | |
| CCAACAAAAAGACCCGTACT+TGG | - | chr6_1:54177719-54177738 | None:intergenic | 45.0% | |
| ! | CCAAGTACGGGTCTTTTTGT+TGG | + | chr6_1:54177716-54177735 | Msa0888810:CDS | 45.0% |
| CTAAACCCTCTAGCCGTAAA+GGG | + | chr6_1:54177780-54177799 | Msa0888810:CDS | 45.0% | |
| TAAACCCTCTAGCCGTAAAG+GGG | + | chr6_1:54177781-54177800 | Msa0888810:CDS | 45.0% | |
| ATCGAGATCCTATGCAGGAT+CGG | + | chr6_1:54179108-54179127 | Msa0888810:intron | 45.0% | |
| GTTACAAGATCGTGAATCGG+AGG | + | chr6_1:54179137-54179156 | Msa0888810:intron | 45.0% | |
| TGAATCGGAGGATCGTAACA+CGG | + | chr6_1:54179149-54179168 | Msa0888810:intron | 45.0% | |
| TCTTCAAATTTCCGGGTTCG+CGG | - | chr6_1:54179777-54179796 | None:intergenic | 45.0% | |
| CGAACCCGGAAATTTGAAGA+AGG | + | chr6_1:54179777-54179796 | Msa0888810:intron | 45.0% | |
| TGCGCCTTCTTCAAATTTCC+GGG | - | chr6_1:54179784-54179803 | None:intergenic | 45.0% | |
| GTGCGCCTTCTTCAAATTTC+CGG | - | chr6_1:54179785-54179804 | None:intergenic | 45.0% | |
| GAATCGTAATCTGATGGGAG+CGG | - | chr6_1:54179873-54179892 | None:intergenic | 45.0% | |
| CTCCCATCAGATTACGATTC+CGG | + | chr6_1:54179873-54179892 | Msa0888810:intron | 45.0% | |
| CTTTGCAACAACTAGCACCA+TGG | - | chr6_1:54179975-54179994 | None:intergenic | 45.0% | |
| !! | TGTTCAAGGCACCGCATATT+AGG | - | chr6_1:54180298-54180317 | None:intergenic | 45.0% |
| GCGTATCACTGAATTGCTGA+AGG | + | chr6_1:54180390-54180409 | Msa0888810:CDS | 45.0% | |
| GCTTCTTCTTGGCACGTTTA+TGG | - | chr6_1:54180465-54180484 | None:intergenic | 45.0% | |
| CAATTTGCACCGCCATATTG+AGG | - | chr6_1:54180971-54180990 | None:intergenic | 45.0% | |
| !! | TTAAAAATAAATTATATAAG+TGG | + | chr6_1:54179308-54179327 | Msa0888810:intron | 5.0% |
| CCTTTACGGCTAGAGGGTTT+AGG | - | chr6_1:54177782-54177801 | None:intergenic | 50.0% | |
| CCTAAACCCTCTAGCCGTAA+AGG | + | chr6_1:54177779-54177798 | Msa0888810:CDS | 50.0% | |
| CATACCCCTTTACGGCTAGA+GGG | - | chr6_1:54177788-54177807 | None:intergenic | 50.0% | |
| TCATACCCCTTTACGGCTAG+AGG | - | chr6_1:54177789-54177808 | None:intergenic | 50.0% | |
| TCGAGATCCTATGCAGGATC+GGG | + | chr6_1:54179109-54179128 | Msa0888810:intron | 50.0% | |
| CTTCAAATTTCCGGGTTCGC+GGG | - | chr6_1:54179776-54179795 | None:intergenic | 50.0% | |
| AGCGGTGGAATCGAGTGTTT+CGG | - | chr6_1:54179824-54179843 | None:intergenic | 50.0% | |
| CGCCGGAATCGTAATCTGAT+GGG | - | chr6_1:54179878-54179897 | None:intergenic | 50.0% | |
| CCATCAGATTACGATTCCGG+CGG | + | chr6_1:54179876-54179895 | Msa0888810:intron | 50.0% | |
| ACTCGTACGATCCTACGAGT+TGG | + | chr6_1:54179933-54179952 | Msa0888810:intron | 50.0% | |
| AGAATCGCGATCCAACTCGT+AGG | - | chr6_1:54179947-54179966 | None:intergenic | 50.0% | |
| GATCGCGATTCTGTCTACCA+TGG | + | chr6_1:54179955-54179974 | Msa0888810:intron | 50.0% | |
| ! | AGGCACCGCATATTAGGACT+AGG | - | chr6_1:54180292-54180311 | None:intergenic | 50.0% |
| GCAAGCGTGTGCACTTTGTA+AGG | + | chr6_1:54180326-54180345 | Msa0888810:CDS | 50.0% | |
| ATGGGTTCCGAGCTTTCTCT+TGG | - | chr6_1:54180446-54180465 | None:intergenic | 50.0% | |
| CATCTCCTCACGCTTCTTCT+TGG | - | chr6_1:54180476-54180495 | None:intergenic | 50.0% | |
| GAGCAAACCTCATCTTTCGG+AGG | - | chr6_1:54180507-54180526 | None:intergenic | 50.0% | |
| ! | TTAATTTTGCGCAGGGCTGG+TGG | + | chr6_1:54180614-54180633 | Msa0888810:intron | 50.0% |
| TGGCCTATGCCTCAATATGG+CGG | + | chr6_1:54180959-54180978 | Msa0888810:three_prime_UTR | 50.0% | |
| AGACCCGTACTTGGCTGCTT+CGG | - | chr6_1:54177710-54177729 | None:intergenic | 55.0% | |
| CGAGATCCTATGCAGGATCG+GGG | + | chr6_1:54179110-54179129 | Msa0888810:intron | 55.0% | |
| ATCCTATGCAGGATCGGGGA+AGG | + | chr6_1:54179114-54179133 | Msa0888810:intron | 55.0% | |
| TCCTATGCAGGATCGGGGAA+GGG | + | chr6_1:54179115-54179134 | Msa0888810:intron | 55.0% | |
| AAATTTCCGGGTTCGCGGGT+CGG | - | chr6_1:54179772-54179791 | None:intergenic | 55.0% | |
| ! | GTGTTTCGGCCGATTCTGTG+CGG | - | chr6_1:54179810-54179829 | None:intergenic | 55.0% |
| ! | ACCGCTTCCACGCATTTTCG+CGG | + | chr6_1:54179838-54179857 | Msa0888810:intron | 55.0% |
| ! | ACGCATTTTCGCGGCGATTC+CGG | + | chr6_1:54179847-54179866 | Msa0888810:intron | 55.0% |
| CCGCCGGAATCGTAATCTGA+TGG | - | chr6_1:54179879-54179898 | None:intergenic | 55.0% | |
| TGTAAGGAACCTCATCCGCG+AGG | + | chr6_1:54180342-54180361 | Msa0888810:CDS | 55.0% | |
| ! | ACGTGCCAAGAAGAAGCGTG+AGG | + | chr6_1:54180468-54180487 | Msa0888810:CDS | 55.0% |
| CCTCATCTTTCGGAGGACGT+TGG | - | chr6_1:54180500-54180519 | None:intergenic | 55.0% | |
| CCAACGTCCTCCGAAAGATG+AGG | + | chr6_1:54180497-54180516 | Msa0888810:CDS | 55.0% | |
| GCACCGCCATATTGAGGCAT+AGG | - | chr6_1:54180965-54180984 | None:intergenic | 55.0% | |
| ACCCTTCCCCGATCCTGCAT+AGG | - | chr6_1:54179119-54179138 | None:intergenic | 60.0% | |
| AATTTCCGGGTTCGCGGGTC+GGG | - | chr6_1:54179771-54179790 | None:intergenic | 60.0% | |
| GCGAAAATGCGTGGAAGCGG+TGG | - | chr6_1:54179839-54179858 | None:intergenic | 60.0% | |
| GCCGCGAAAATGCGTGGAAG+CGG | - | chr6_1:54179842-54179861 | None:intergenic | 60.0% | |
| GGAATCGCCGCGAAAATGCG+TGG | - | chr6_1:54179848-54179867 | None:intergenic | 60.0% | |
| CGTAATCTGATGGGAGCGGC+CGG | - | chr6_1:54179869-54179888 | None:intergenic | 60.0% | |
| TTACGATTCCGGCGGCGTTC+CGG | + | chr6_1:54179884-54179903 | Msa0888810:intron | 60.0% | |
| AACCTCATCCGCGAGGTAGC+TGG | + | chr6_1:54180349-54180368 | Msa0888810:CDS | 60.0% | |
| GTGCAAAGCCAGCTACCTCG+CGG | - | chr6_1:54180360-54180379 | None:intergenic | 60.0% | |
| ! | GGCGCCGAAGCAGCCAAGTA+CGG | + | chr6_1:54177703-54177722 | Msa0888810:CDS | 65.0% |
| GCGCCGAAGCAGCCAAGTAC+GGG | + | chr6_1:54177704-54177723 | Msa0888810:CDS | 65.0% | |
| GGCGCACAGCCGCACAGAAT+CGG | + | chr6_1:54179798-54179817 | Msa0888810:intron | 65.0% | |
| AGCCAGCTACCTCGCGGATG+AGG | - | chr6_1:54180354-54180373 | None:intergenic | 65.0% | |
| ATTCCGGCGGCGTTCCGGCA+CGG | + | chr6_1:54179889-54179908 | Msa0888810:intron | 70.0% | |
| ! | TTGCGCAGGGCTGGTGGAGC+AGG | + | chr6_1:54180620-54180639 | Msa0888810:intron | 70.0% |
| GCGAACCCGACCCGCGAACC+CGG | + | chr6_1:54179763-54179782 | Msa0888810:intron | 75.0% | |
| CTCGCAACCCCCCACCGTGC+CGG | - | chr6_1:54179906-54179925 | None:intergenic | 75.0% | |
| ! | CGCGGGTCGGGTTCGCGACC+CGG | - | chr6_1:54179759-54179778 | None:intergenic | 80.0% |
| ! | CCACCGTGCCGGAACGCCGC+CGG | - | chr6_1:54179895-54179914 | None:intergenic | 80.0% |
| ! | CGGCGGCGTTCCGGCACGGT+GGG | + | chr6_1:54179893-54179912 | Msa0888810:intron | 80.0% |
| ! | GGCGGCGTTCCGGCACGGTG+GGG | + | chr6_1:54179894-54179913 | Msa0888810:intron | 80.0% |
| ! | GCGGCGTTCCGGCACGGTGG+GGG | + | chr6_1:54179895-54179914 | Msa0888810:intron | 80.0% |
| ! | CGGCGTTCCGGCACGGTGGG+GGG | + | chr6_1:54179896-54179915 | Msa0888810:intron | 80.0% |
| ! | CCGGCGGCGTTCCGGCACGG+TGG | + | chr6_1:54179892-54179911 | Msa0888810:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 54177509 | 54181085 | 54177509 | ID=Msa0888810;Name=Msa0888810 |
| chr6_1 | mRNA | 54177509 | 54181085 | 54177509 | ID=Msa0888810-mRNA-1;Parent=Msa0888810;Name=Msa0888810-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|1|1|0.66|0.5|4|427|117 |
| chr6_1 | exon | 54177509 | 54177525 | 54177509 | ID=Msa0888810-mRNA-1:exon:10864;Parent=Msa0888810-mRNA-1 |
| chr6_1 | exon | 54177697 | 54177802 | 54177697 | ID=Msa0888810-mRNA-1:exon:10865;Parent=Msa0888810-mRNA-1 |
| chr6_1 | exon | 54180319 | 54180518 | 54180319 | ID=Msa0888810-mRNA-1:exon:10866;Parent=Msa0888810-mRNA-1 |
| chr6_1 | exon | 54180628 | 54181085 | 54180628 | ID=Msa0888810-mRNA-1:exon:10867;Parent=Msa0888810-mRNA-1 |
| chr6_1 | CDS | 54177509 | 54177525 | 54177509 | ID=Msa0888810-mRNA-1:cds;Parent=Msa0888810-mRNA-1 |
| chr6_1 | CDS | 54177697 | 54177802 | 54177697 | ID=Msa0888810-mRNA-1:cds;Parent=Msa0888810-mRNA-1 |
| chr6_1 | CDS | 54180319 | 54180518 | 54180319 | ID=Msa0888810-mRNA-1:cds;Parent=Msa0888810-mRNA-1 |
| chr6_1 | CDS | 54180628 | 54180658 | 54180628 | ID=Msa0888810-mRNA-1:cds;Parent=Msa0888810-mRNA-1 |
| chr6_1 | three_prime_UTR | 54180659 | 54181085 | 54180659 | ID=Msa0888810-mRNA-1:three_prime_utr;Parent=Msa0888810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
