AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1347490

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1347490 MtrunA17_Chr3g0112511 90.179 336 10 1 1 313 237 572 0.0 615
Msa1347490 MtrunA17_Chr3g0100681 67.463 335 86 1 1 312 59 393 3.50e-160 459
Msa1347490 MtrunA17_Chr3g0100851 69.876 322 88 1 1 313 136 457 1.86e-159 464
Msa1347490 MtrunA17_Chr3g0100731 67.976 331 83 1 1 308 1 331 1.14e-153 446
Msa1347490 MtrunA17_Chr3g0100971 64.583 336 96 1 1 313 243 578 2.00e-148 434
Msa1347490 MtrunA17_Chr3g0100801 64.881 336 86 3 1 313 211 537 3.53e-148 434
Msa1347490 MtrunA17_Chr3g0100831 65.625 320 92 1 1 302 246 565 2.91e-144 429
Msa1347490 MtrunA17_Chr3g0100761 63.095 336 101 1 1 313 203 538 1.19e-143 421
Msa1347490 MtrunA17_Chr3g0100961 64.955 331 92 2 1 307 246 576 1.24e-142 425
Msa1347490 MtrunA17_Chr3g0101321 64.179 335 93 3 1 312 242 572 7.08e-142 423
Msa1347490 MtrunA17_Chr1g0189351 62.310 329 101 1 1 306 243 571 1.02e-139 417
Msa1347490 MtrunA17_Chr3g0101331 62.121 330 95 3 1 300 248 577 1.11e-134 404
Msa1347490 MtrunA17_Chr3g0101211 54.464 336 124 4 1 313 40 369 1.39e-121 354
Msa1347490 MtrunA17_Chr3g0101231 57.186 334 118 4 1 312 256 586 2.33e-119 364
Msa1347490 MtrunA17_Chr3g0101271 56.677 337 114 5 1 313 224 552 7.36e-119 362
Msa1347490 MtrunA17_Chr3g0101241 56.677 337 114 5 1 313 224 552 1.15e-118 362
Msa1347490 MtrunA17_Chr3g0101221 54.464 336 127 3 1 313 250 582 1.89e-118 362
Msa1347490 MtrunA17_Chr3g0101181 55.357 336 123 3 1 313 255 586 3.66e-117 359
Msa1347490 MtrunA17_Chr3g0101201 54.627 335 126 3 2 313 249 580 8.31e-115 352
Msa1347490 MtrunA17_Chr1g0149071 56.863 306 87 2 1 306 14 274 1.42e-112 333
Msa1347490 MtrunA17_Chr3g0101391 67.871 249 77 1 67 312 17 265 3.32e-112 337
Msa1347490 MtrunA17_Chr1g0189271 64.050 242 64 1 1 219 83 324 2.10e-109 320
Msa1347490 MtrunA17_Chr3g0101251 55.272 313 123 3 1 313 247 542 2.31e-107 333
Msa1347490 MtrunA17_Chr1g0151481 51.084 323 133 2 1 298 249 571 1.28e-105 329
Msa1347490 MtrunA17_Chr3g0101011 51.026 341 139 4 1 313 257 597 2.52e-105 328
Msa1347490 MtrunA17_Chr3g0080771 48.287 321 142 2 1 298 248 567 6.70e-97 306
Msa1347490 MtrunA17_Chr3g0094301 48.036 331 149 2 1 308 248 578 1.21e-96 305
Msa1347490 MtrunA17_Chr7g0229761 48.036 331 149 2 1 308 248 578 1.21e-96 305
Msa1347490 MtrunA17_Chr3g0081391 48.408 314 139 1 8 298 254 567 1.56e-96 305
Msa1347490 MtrunA17_Chr3g0081211 48.287 321 143 1 1 298 246 566 8.99e-96 303
Msa1347490 MtrunA17_Chr3g0080741 47.975 321 144 2 1 298 250 570 1.35e-95 302
Msa1347490 MtrunA17_Chr3g0080791 48.287 321 142 2 1 298 248 567 2.32e-95 302
Msa1347490 MtrunA17_Chr3g0081341 47.352 321 146 1 1 298 311 631 1.23e-93 298
Msa1347490 MtrunA17_Chr3g0084351 45.483 321 152 2 1 298 173 493 2.21e-93 287
Msa1347490 MtrunA17_Chr3g0081191 45.706 326 150 2 1 303 247 568 2.93e-91 291
Msa1347490 MtrunA17_Chr3g0080721 47.712 306 135 3 17 299 2 305 6.78e-91 284
Msa1347490 MtrunA17_Chr3g0081361 45.210 334 152 3 1 311 256 581 8.48e-91 290
Msa1347490 MtrunA17_Chr3g0080731 44.343 327 159 2 1 304 248 574 1.22e-89 286
Msa1347490 MtrunA17_Chr3g0081371 48.287 321 138 3 1 298 256 571 1.38e-89 286
Msa1347490 MtrunA17_Chr3g0080601 45.015 331 159 1 1 308 247 577 1.59e-89 286
Msa1347490 MtrunA17_Chr3g0080751 46.847 333 151 5 1 308 248 579 3.27e-88 283
Msa1347490 MtrunA17_Chr3g0096971 66.857 175 35 1 20 171 1 175 1.21e-77 234
Msa1347490 MtrunA17_Chr3g0081181 44.237 321 151 3 1 298 236 551 4.96e-77 253
Msa1347490 MtrunA17_Chr3g0080651 50.855 234 113 1 65 298 253 484 9.77e-75 245
Msa1347490 MtrunA17_Chr1g0189321 67.470 166 52 1 139 304 1 164 2.46e-73 226
Msa1347490 MtrunA17_Chr3g0080631 38.066 331 137 2 1 308 248 533 2.20e-64 218
Msa1347490 MtrunA17_Chr5g0410001 38.509 322 166 6 4 298 237 553 4.51e-64 217
Msa1347490 MtrunA17_Chr5g0410031 37.195 328 175 5 4 304 238 561 8.84e-64 216
Msa1347490 MtrunA17_Chr5g0409991 38.291 316 170 6 14 308 246 557 1.04e-58 202
Msa1347490 MtrunA17_Chr5g0410021 37.618 319 173 6 14 308 243 559 1.37e-58 202
Msa1347490 MtrunA17_Chr5g0444301 69.343 137 42 0 176 312 1 137 1.07e-57 192
Msa1347490 MtrunA17_Chr5g0404741 37.942 311 164 7 15 302 250 554 1.63e-56 196
Msa1347490 MtrunA17_Chr5g0409971 36.562 320 174 7 14 308 247 562 6.47e-55 192
Msa1347490 MtrunA17_Chr4g0037421 38.562 306 157 7 15 296 312 610 1.05e-53 188
Msa1347490 MtrunA17_Chr3g0100701 69.231 130 39 1 184 313 282 410 3.42e-52 182
Msa1347490 MtrunA17_Chr3g0100701 81.081 37 7 0 1 37 246 282 4.83e-12 66.6
Msa1347490 MtrunA17_Chr3g0100781 61.538 130 27 1 1 107 243 372 1.04e-45 159
Msa1347490 MtrunA17_Chr3g0100791 66.379 116 39 0 198 313 1 116 4.78e-45 159
Msa1347490 MtrunA17_Chr3g0101171 69.072 97 30 0 165 261 5 101 1.04e-43 145
Msa1347490 MtrunA17_Chr7g0219851 35.495 293 154 6 1 261 231 520 1.80e-43 159
Msa1347490 MtrunA17_Chr2g0299001 34.277 318 144 10 36 297 272 580 6.35e-42 154
Msa1347490 MtrunA17_Chr3g0101361 54.615 130 52 2 184 313 288 410 1.73e-36 139
Msa1347490 MtrunA17_Chr3g0090651 32.990 291 157 11 24 289 262 539 5.76e-31 122
Msa1347490 MtrunA17_Chr4g0010261 32.319 263 145 8 28 265 253 507 1.77e-30 121
Msa1347490 MtrunA17_Chr3g0091041 33.696 276 160 11 24 289 262 524 3.57e-30 119
Msa1347490 MtrunA17_Chr3g0091081 32.867 286 156 10 28 289 266 539 6.30e-30 120
Msa1347490 MtrunA17_Chr3g0091061 32.517 286 157 10 28 289 266 539 1.15e-29 119
Msa1347490 MtrunA17_Chr4g0010221 31.967 244 135 8 28 246 253 490 3.61e-29 117
Msa1347490 MtrunA17_Chr4g0009781 32.129 249 136 8 27 246 248 492 3.97e-29 117
Msa1347490 MtrunA17_Chr3g0090691 32.517 286 157 10 28 289 266 539 7.88e-29 116
Msa1347490 MtrunA17_Chr3g0082811 31.349 252 137 8 19 243 243 485 1.83e-28 115
Msa1347490 MtrunA17_Chr3g0082871 31.698 265 139 8 15 246 233 488 4.23e-28 114
Msa1347490 MtrunA17_Chr3g0081841 43.262 141 75 2 172 311 189 325 4.29e-28 113
Msa1347490 MtrunA17_Chr3g0081841 36.800 125 52 2 8 109 90 210 2.10e-15 76.6
Msa1347490 MtrunA17_Chr3g0092241 32.510 243 133 7 28 246 266 501 6.20e-28 114
Msa1347490 MtrunA17_Chr4g0010251 31.890 254 139 9 19 246 246 491 1.10e-27 113
Msa1347490 MtrunA17_Chr3g0078361 32.180 289 140 12 10 263 64 331 1.39e-27 111
Msa1347490 MtrunA17_Chr3g0090141 31.837 245 132 8 28 246 266 501 3.77e-27 111
Msa1347490 MtrunA17_Chr3g0090371 31.837 245 132 8 28 246 266 501 3.91e-27 111
Msa1347490 MtrunA17_Chr3g0082101 32.922 243 130 7 28 246 270 503 8.20e-27 110
Msa1347490 MtrunA17_Chr3g0087841 30.943 265 146 9 28 266 266 519 9.15e-27 110
Msa1347490 MtrunA17_Chr4g0010201 29.151 271 160 8 19 265 246 508 9.43e-27 110
Msa1347490 MtrunA17_Chr3g0089471 32.068 237 130 7 34 246 273 502 1.13e-26 110
Msa1347490 MtrunA17_Chr3g0089871 34.146 246 125 10 28 246 265 500 1.49e-26 110
Msa1347490 MtrunA17_Chr3g0089991 32.099 243 134 7 28 246 270 505 2.50e-26 109
Msa1347490 MtrunA17_Chr1g0164611 32.510 243 131 7 28 246 270 503 3.03e-26 108
Msa1347490 MtrunA17_Chr7g0248531 30.449 312 179 11 28 312 254 554 4.66e-26 108
Msa1347490 MtrunA17_Chr2g0309721 30.802 237 133 7 34 246 272 501 6.71e-26 108
Msa1347490 MtrunA17_Chr3g0082891 30.739 257 138 8 19 246 243 488 1.01e-25 107
Msa1347490 MtrunA17_Chr1g0197241 31.250 256 147 5 26 256 888 1139 1.81e-25 107
Msa1347490 MtrunA17_Chr3g0089591 31.276 243 136 7 28 246 271 506 1.94e-25 106
Msa1347490 MtrunA17_Chr3g0089601 30.952 252 139 8 21 246 257 499 2.23e-25 106
Msa1347490 MtrunA17_Chr3g0089931 32.068 237 130 7 34 246 257 486 2.76e-25 105
Msa1347490 MtrunA17_Chr3g0089501 30.800 250 142 7 21 246 257 499 3.90e-25 105
Msa1347490 MtrunA17_Chr3g0090401 30.612 245 135 8 28 246 477 712 4.10e-25 105
Msa1347490 MtrunA17_Chr4g0020501 31.560 282 153 9 21 276 213 480 4.22e-25 105
Msa1347490 MtrunA17_Chr3g0089211 30.065 306 171 11 34 308 319 612 4.32e-25 105
Msa1347490 MtrunA17_Chr3g0082881 30.000 260 150 7 15 246 233 488 6.75e-25 105
Msa1347490 MtrunA17_Chr3g0089911 32.218 239 127 8 34 246 271 500 8.11e-25 104
Msa1347490 MtrunA17_Chr5g0415511 27.476 313 194 7 20 310 254 555 1.09e-24 104
Msa1347490 MtrunA17_Chr8g0355071 31.111 225 125 6 27 224 72 293 1.12e-24 101
Msa1347490 MtrunA17_Chr7g0257221 32.946 258 142 8 15 248 269 519 1.31e-24 104
Msa1347490 MtrunA17_Chr3g0089251 29.739 306 172 11 34 308 301 594 1.32e-24 104
Msa1347490 MtrunA17_Chr6g0484551 33.945 218 125 7 33 246 273 475 1.44e-24 103
Msa1347490 MtrunA17_Chr3g0089761 29.808 312 176 11 28 308 266 565 2.54e-24 103
Msa1347490 MtrunA17_Chr3g0089541 29.333 300 172 10 34 305 276 563 3.46e-24 103
Msa1347490 MtrunA17_Chr4g0048471 28.571 252 144 7 28 248 120 366 3.69e-24 102
Msa1347490 MtrunA17_Chr3g0090431 30.488 246 134 8 28 246 138 373 4.04e-24 102
Msa1347490 MtrunA17_Chr7g0248221 33.205 259 140 8 15 248 258 508 4.10e-24 102
Msa1347490 MtrunA17_Chr8g0344071 33.333 192 114 4 60 249 590 769 4.38e-24 102
Msa1347490 MtrunA17_Chr3g0089781 32.489 237 129 7 34 246 272 501 7.00e-24 102
Msa1347490 MtrunA17_Chr3g0089811 29.739 306 172 11 34 308 272 565 8.22e-24 102
Msa1347490 MtrunA17_Chr8g0348931 31.984 247 129 9 28 246 273 508 8.62e-24 102
Msa1347490 MtrunA17_Chr3g0089651 30.453 243 138 7 28 246 270 505 1.48e-23 101
Msa1347490 MtrunA17_Chr6g0475491 25.305 328 211 8 1 305 242 558 2.18e-23 100
Msa1347490 MtrunA17_Chr8g0337891 27.152 302 182 11 27 299 256 548 2.82e-23 100
Msa1347490 MtrunA17_Chr1g0169901 28.254 315 169 11 21 308 248 532 3.15e-23 100
Msa1347490 MtrunA17_Chr8g0352831 29.831 295 171 9 21 290 269 552 3.19e-23 100
Msa1347490 MtrunA17_Chr3g0089421 29.796 245 140 8 28 246 265 503 3.25e-23 100
Msa1347490 MtrunA17_Chr7g0248431 32.117 274 143 9 15 256 258 520 3.35e-23 99.8
Msa1347490 MtrunA17_Chr5g0446611 30.263 304 156 14 33 300 272 555 4.61e-23 99.8
Msa1347490 MtrunA17_Chr1g0164391 30.364 247 137 9 28 248 266 503 5.24e-23 99.8
Msa1347490 MtrunA17_Chr8g0355411 29.752 242 134 6 36 246 266 502 5.26e-23 99.4
Msa1347490 MtrunA17_Chr2g0316291 27.451 306 192 7 25 307 263 561 6.37e-23 99.4
Msa1347490 MtrunA17_Chr1g0169951 31.783 258 145 8 15 248 267 517 7.18e-23 99.0
Msa1347490 MtrunA17_Chr4g0025391 30.328 244 137 8 28 246 265 500 8.43e-23 99.0
Msa1347490 MtrunA17_Chr5g0417301 31.579 228 138 5 28 246 224 442 1.52e-22 97.8
Msa1347490 MtrunA17_Chr3g0089961 28.247 308 177 12 34 308 272 568 1.58e-22 98.2
Msa1347490 MtrunA17_Chr1g0164631 30.159 252 139 11 21 246 267 507 1.62e-22 98.2
Msa1347490 MtrunA17_Chr5g0430721 29.588 267 132 6 20 246 282 532 2.37e-22 97.8
Msa1347490 MtrunA17_Chr1g0159111 28.058 278 165 9 33 278 251 525 2.47e-22 97.4
Msa1347490 MtrunA17_Chr2g0299091 29.876 241 135 8 17 227 223 459 3.32e-22 97.1
Msa1347490 MtrunA17_Chr3g0085471 31.068 309 173 12 36 310 275 577 4.39e-22 97.1
Msa1347490 MtrunA17_Chr5g0415471 27.575 301 185 8 20 296 256 547 6.20e-22 96.3
Msa1347490 MtrunA17_Chr8g0346831 25.078 319 183 11 16 299 253 550 7.65e-22 96.3
Msa1347490 MtrunA17_Chr8g0338391 25.914 301 192 10 33 310 265 557 8.76e-22 95.9
Msa1347490 MtrunA17_Chr3g0092261 31.148 244 123 9 34 246 316 545 9.52e-22 95.9
Msa1347490 MtrunA17_Chr3g0082391 30.040 253 143 9 21 248 260 503 1.60e-21 95.1
Msa1347490 MtrunA17_Chr4g0048421 27.645 293 169 9 33 286 250 538 2.00e-21 94.7
Msa1347490 MtrunA17_Chr6g0471941 25.850 294 189 7 33 303 266 553 2.10e-21 94.7
Msa1347490 MtrunA17_Chr3g0082131 29.010 293 161 12 15 272 252 532 2.11e-21 94.7
Msa1347490 MtrunA17_Chr2g0282991 28.667 300 162 13 33 298 269 550 2.74e-21 94.7
Msa1347490 MtrunA17_Chr6g0478721 27.682 289 166 9 33 282 168 452 3.79e-21 94.0
Msa1347490 MtrunA17_Chr3g0085521 35.780 218 122 8 53 264 291 496 3.96e-21 94.0
Msa1347490 MtrunA17_Chr7g0221481 32.210 267 142 9 21 260 246 500 4.22e-21 94.0
Msa1347490 MtrunA17_Chr3g0087701 31.086 267 146 9 21 260 244 499 4.28e-21 94.0
Msa1347490 MtrunA17_Chr8g0338671 24.675 308 198 9 24 305 141 440 6.69e-21 93.2
Msa1347490 MtrunA17_Chr5g0414311 26.641 259 162 5 10 246 248 500 7.75e-21 93.2
Msa1347490 MtrunA17_Chr3g0085651 30.502 259 150 8 25 260 255 506 9.46e-21 93.2
Msa1347490 MtrunA17_Chr7g0218941 24.742 291 185 8 33 301 268 546 1.02e-20 92.8
Msa1347490 MtrunA17_Chr8g0352861 34.081 223 136 7 57 278 324 536 1.14e-20 92.8
Msa1347490 MtrunA17_Chr6g0470081 30.242 248 140 7 24 246 247 486 1.21e-20 92.8
Msa1347490 MtrunA17_Chr1g0155991 30.120 249 138 6 28 246 246 488 1.33e-20 92.4
Msa1347490 MtrunA17_Chr6g0470011 29.839 248 141 7 24 246 247 486 1.78e-20 92.0
Msa1347490 MtrunA17_Chr7g0257201 30.620 258 148 8 15 248 269 519 2.03e-20 92.0
Msa1347490 MtrunA17_Chr3g0082311 29.921 254 143 9 21 248 259 503 2.59e-20 91.7
Msa1347490 MtrunA17_Chr6g0470021 30.242 248 140 7 24 246 138 377 2.66e-20 91.7
Msa1347490 MtrunA17_Chr7g0257191 30.830 253 144 8 20 248 275 520 2.86e-20 91.3
Msa1347490 MtrunA17_Chr5g0413811 28.514 249 149 6 20 246 30 271 2.89e-20 91.3
Msa1347490 MtrunA17_Chr5g0417251 26.452 310 185 9 16 296 15 310 2.92e-20 91.3
Msa1347490 MtrunA17_Chr5g0414181 28.114 281 171 7 19 277 252 523 3.32e-20 91.3
Msa1347490 MtrunA17_Chr2g0299101 33.149 181 109 6 55 227 309 485 4.15e-20 90.9
Msa1347490 MtrunA17_Chr2g0299121 32.597 181 110 6 55 227 309 485 4.82e-20 90.9
Msa1347490 MtrunA17_Chr3g0085561 32.178 202 110 5 21 199 229 426 6.06e-20 90.5
Msa1347490 MtrunA17_Chr2g0299141 32.044 181 111 6 55 227 24 200 9.10e-20 89.0
Msa1347490 MtrunA17_Chr8g0338251 23.659 317 209 8 19 308 235 545 9.92e-20 89.7
Msa1347490 MtrunA17_Chr6g0456131 26.129 310 192 9 24 303 248 550 9.99e-20 89.7
Msa1347490 MtrunA17_Chr3g0086091 31.641 256 144 9 28 260 60 307 1.13e-19 89.7
Msa1347490 MtrunA17_Chr1g0169941 29.297 256 150 8 15 246 29 277 1.63e-19 87.4
Msa1347490 MtrunA17_Chr1g0189551 31.250 288 155 14 8 264 275 550 2.17e-19 89.0
Msa1347490 MtrunA17_Chr3g0085131 29.167 264 137 8 17 246 239 486 2.17e-19 89.0
Msa1347490 MtrunA17_Chr7g0257541 31.600 250 136 9 27 248 276 518 2.32e-19 88.6
Msa1347490 MtrunA17_Chr5g0430641 30.116 259 142 7 18 246 241 490 2.44e-19 88.6
Msa1347490 MtrunA17_Chr5g0433771 28.994 338 187 9 21 312 267 597 4.16e-19 87.8
Msa1347490 MtrunA17_Chr3g0084971 30.085 236 135 6 34 246 262 490 4.17e-19 88.2
Msa1347490 MtrunA17_Chr3g0091011 26.299 308 190 10 18 298 225 522 4.31e-19 87.8
Msa1347490 MtrunA17_Chr2g0299151 30.142 282 150 12 28 276 247 514 4.35e-19 88.2
Msa1347490 MtrunA17_Chr7g0257251 37.267 161 92 4 68 224 10 165 4.57e-19 83.2
Msa1347490 MtrunA17_Chr5g0414231 27.953 254 145 6 20 246 254 496 4.78e-19 87.4
Msa1347490 MtrunA17_Chr4g0051651 30.932 236 123 8 27 227 283 513 5.12e-19 87.4
Msa1347490 MtrunA17_Chr5g0430141 27.626 257 149 4 21 246 242 492 6.08e-19 87.4
Msa1347490 MtrunA17_Chr3g0082321 34.239 184 110 6 67 248 275 449 8.84e-19 87.0
Msa1347490 MtrunA17_Chr6g0468021 29.167 240 142 7 28 246 251 483 8.88e-19 87.0
Msa1347490 MtrunA17_Chr3g0087581 30.502 259 147 8 25 260 249 497 9.04e-19 87.0
Msa1347490 MtrunA17_Chr5g0414171 32.768 177 113 3 67 243 250 420 9.54e-19 86.3
Msa1347490 MtrunA17_Chr1g0164581 29.010 293 161 12 15 272 228 508 9.86e-19 87.0
Msa1347490 MtrunA17_Chr5g0431051 28.516 256 134 7 28 246 249 492 1.04e-18 87.0
Msa1347490 MtrunA17_Chr5g0430581 29.260 311 167 10 28 292 244 547 1.16e-18 86.7
Msa1347490 MtrunA17_Chr8g0338621 24.204 314 202 10 11 301 248 548 1.32e-18 86.3
Msa1347490 MtrunA17_Chr3g0085501 29.856 278 158 10 12 265 253 517 1.48e-18 86.3
Msa1347490 MtrunA17_Chr2g0309151 28.682 258 153 7 15 248 37 287 1.49e-18 85.9
Msa1347490 MtrunA17_Chr8g0338681 28.708 209 124 5 24 210 35 240 1.80e-18 83.2
Msa1347490 MtrunA17_Chr8g0338261 23.826 298 198 7 24 298 258 549 1.97e-18 85.9
Msa1347490 MtrunA17_Chr3g0085161 28.137 263 152 8 12 246 97 350 2.36e-18 85.9
Msa1347490 MtrunA17_Chr5g0430951 28.571 322 173 12 18 292 241 552 2.43e-18 85.9
Msa1347490 MtrunA17_Chr3g0086181 28.852 305 178 10 25 300 246 540 2.75e-18 85.5
Msa1347490 MtrunA17_Chr3g0086151 30.116 259 150 8 25 260 246 496 3.61e-18 85.1
Msa1347490 MtrunA17_Chr3g0123111 29.555 247 143 6 24 246 246 485 4.45e-18 85.1
Msa1347490 MtrunA17_Chr5g0414201 29.583 240 156 6 71 307 327 556 5.60e-18 84.7
Msa1347490 MtrunA17_Chr6g0467961 27.917 240 145 6 28 246 251 483 5.95e-18 84.3
Msa1347490 MtrunA17_Chr3g0084051 30.638 235 131 8 36 246 275 501 6.11e-18 84.7
Msa1347490 MtrunA17_Chr3g0089431 30.846 201 107 6 28 203 270 463 6.83e-18 84.0
Msa1347490 MtrunA17_Chr3g0085091 31.513 238 128 9 36 246 263 492 6.96e-18 84.3
Msa1347490 MtrunA17_Chr5g0430441 28.906 256 145 6 21 246 242 490 7.34e-18 84.3
Msa1347490 MtrunA17_Chr3g0113781 29.091 220 126 7 33 227 50 264 7.70e-18 84.0
Msa1347490 MtrunA17_Chr3g0086161 30.337 267 147 9 21 260 242 496 7.91e-18 84.3
Msa1347490 MtrunA17_Chr1g0197201 29.520 271 149 10 24 266 687 943 8.53e-18 84.3
Msa1347490 MtrunA17_Chr3g0086741 29.242 277 157 9 16 264 264 529 9.89e-18 84.0
Msa1347490 MtrunA17_Chr3g0113481 29.091 220 126 7 33 227 255 469 9.96e-18 84.0
Msa1347490 MtrunA17_Chr5g0430291 28.302 265 144 8 16 246 239 491 1.11e-17 84.0
Msa1347490 MtrunA17_Chr3g0113791 29.091 220 126 7 33 227 255 469 1.12e-17 84.0
Msa1347490 MtrunA17_Chr1g0147141 31.224 237 131 7 33 246 276 503 1.25e-17 83.6
Msa1347490 MtrunA17_Chr3g0086621 29.433 282 160 9 21 275 242 511 1.58e-17 83.2
Msa1347490 MtrunA17_Chr8g0338361 23.588 301 197 8 24 299 123 415 1.70e-17 82.8
Msa1347490 MtrunA17_Chr4g0027251 28.185 259 146 7 21 247 242 492 1.75e-17 83.2
Msa1347490 MtrunA17_Chr5g0430621 28.417 278 140 10 11 246 231 491 2.33e-17 82.8
Msa1347490 MtrunA17_Chr6g0468151 27.059 255 146 7 24 246 244 490 2.45e-17 82.8
Msa1347490 MtrunA17_Chr3g0087541 29.200 250 149 7 21 246 260 505 2.53e-17 82.8
Msa1347490 MtrunA17_Chr3g0085801 29.130 230 135 6 21 226 262 487 2.59e-17 82.8
Msa1347490 MtrunA17_Chr3g0087731 27.673 318 186 12 21 307 53 357 3.43e-17 82.4
Msa1347490 MtrunA17_Chr7g0244231 28.374 289 164 9 28 285 244 520 3.57e-17 82.4
Msa1347490 MtrunA17_Chr3g0086221 29.206 315 172 11 21 300 241 539 3.86e-17 82.0
Msa1347490 MtrunA17_Chr3g0084031 28.239 301 178 11 33 305 274 564 3.90e-17 82.0
Msa1347490 MtrunA17_Chr5g0429951 27.907 258 146 7 21 246 242 491 4.40e-17 82.0
Msa1347490 MtrunA17_Chr8g0352211 30.968 155 103 3 96 249 1348 1499 4.73e-17 82.0
Msa1347490 MtrunA17_Chr6g0468101 28.862 246 144 6 25 246 247 485 5.11e-17 81.6
Msa1347490 MtrunA17_Chr4g0008461 27.907 258 148 7 16 246 236 482 5.30e-17 81.6
Msa1347490 MtrunA17_Chr5g0430511 35.032 157 86 3 96 246 346 492 6.40e-17 81.6
Msa1347490 MtrunA17_Chr3g0085111 28.462 260 146 9 17 246 238 487 6.98e-17 81.3
Msa1347490 MtrunA17_Chr3g0085331 30.198 202 114 5 21 199 260 457 8.97e-17 81.3
Msa1347490 MtrunA17_Chr8g0338861 32.680 153 99 3 95 246 56 205 9.29e-17 80.9
Msa1347490 MtrunA17_Chr3g0083621 26.493 268 161 9 2 246 255 509 9.37e-17 81.3
Msa1347490 MtrunA17_Chr6g0467911 27.823 248 146 7 24 246 247 486 1.21e-16 80.5
Msa1347490 MtrunA17_Chr3g0085551 28.906 256 143 9 18 246 133 376 1.23e-16 80.5
Msa1347490 MtrunA17_Chr3g0082351 35.811 148 87 4 100 246 359 499 1.30e-16 80.5
Msa1347490 MtrunA17_Chr5g0429961 25.000 316 193 9 28 309 249 554 1.46e-16 80.5
Msa1347490 MtrunA17_Chr3g0082791 28.986 276 161 9 25 275 264 529 1.47e-16 80.5
Msa1347490 MtrunA17_Chr4g0071021 29.756 205 108 5 33 207 237 435 1.58e-16 79.7
Msa1347490 MtrunA17_Chr6g0468451 28.216 241 144 6 28 246 251 484 2.08e-16 80.1
Msa1347490 MtrunA17_Chr6g0468121 27.083 240 147 6 28 246 252 484 2.78e-16 79.7
Msa1347490 MtrunA17_Chr1g0155321 29.897 194 130 3 53 246 299 486 2.83e-16 79.7
Msa1347490 MtrunA17_Chr7g0257551 30.357 224 127 6 15 214 192 410 3.57e-16 78.6
Msa1347490 MtrunA17_Chr3g0085931 28.340 247 146 8 24 246 247 486 5.67e-16 78.6
Msa1347490 MtrunA17_Chr6g0468341 27.803 223 133 5 24 224 248 464 9.85e-16 77.8
Msa1347490 MtrunA17_Chr3g0085751 32.020 203 118 6 53 246 293 484 1.67e-15 77.4
Msa1347490 MtrunA17_Chr3g0084061 29.744 195 134 3 53 246 305 497 1.67e-15 77.4
Msa1347490 MtrunA17_Chr3g0083751 26.493 268 161 9 2 246 249 503 1.70e-15 77.4
Msa1347490 MtrunA17_Chr3g0085451 28.571 287 170 11 12 274 225 500 2.28e-15 77.0
Msa1347490 MtrunA17_Chr4g0010491 30.387 181 96 6 27 181 248 424 2.82e-15 75.9
Msa1347490 MtrunA17_Chr6g0468331 25.561 223 138 5 24 224 246 462 3.36e-15 76.3
Msa1347490 MtrunA17_Chr3g0083721 31.892 185 110 7 68 249 273 444 4.84e-15 75.9
Msa1347490 MtrunA17_Chr6g0468271 26.122 245 152 7 24 246 245 482 4.90e-15 75.9
Msa1347490 MtrunA17_Chr8g0356251 33.333 180 108 7 68 246 356 524 1.44e-14 74.3
Msa1347490 MtrunA17_Chr3g0080871 33.108 148 91 5 100 246 346 486 1.48e-14 74.3
Msa1347490 MtrunA17_Chr1g0189281 58.333 60 25 0 246 305 2 61 1.91e-14 73.2
Msa1347490 MtrunA17_Chr3g0084081 31.624 234 130 9 36 246 275 501 2.83e-14 73.6
Msa1347490 MtrunA17_Chr8g0351821 29.557 203 113 5 20 198 243 439 1.12e-13 71.2
Msa1347490 MtrunA17_Chr3g0085431 32.663 199 124 6 108 301 2 195 3.19e-13 70.1
Msa1347490 MtrunA17_Chr1g0189511 33.766 154 92 7 100 247 10 159 3.25e-13 68.6
Msa1347490 MtrunA17_Chr3g0083591 30.168 179 113 6 68 245 295 462 3.56e-13 70.1
Msa1347490 MtrunA17_Chr5g0443761 29.508 244 136 9 29 248 102 333 5.56e-13 69.7
Msa1347490 MtrunA17_Chr6g0468111 30.168 179 118 4 68 246 156 327 8.72e-13 68.6
Msa1347490 MtrunA17_Chr5g0410481 31.111 135 74 3 65 198 278 394 1.07e-12 68.9
Msa1347490 MtrunA17_Chr3g0085701 31.841 201 103 7 25 199 247 439 6.13e-12 66.6
Msa1347490 MtrunA17_Chr3g0108811 23.774 265 161 8 3 245 235 480 1.69e-11 65.1
Msa1347490 MtrunA17_Chr5g0430331 29.949 197 92 7 28 190 245 429 1.98e-11 64.3
Msa1347490 MtrunA17_Chr3g0083641 30.488 164 100 5 68 228 306 458 2.16e-11 64.7
Msa1347490 MtrunA17_Chr3g0091121 35.897 117 68 4 151 265 19 130 2.41e-11 64.3
Msa1347490 MtrunA17_Chr3g0097631 28.137 263 141 11 15 246 53 298 4.72e-11 63.2
Msa1347490 MtrunA17_Chr1g0153991 24.576 236 142 8 35 248 281 502 5.74e-11 63.5
Msa1347490 MtrunA17_Chr2g0299881 29.362 235 115 9 33 246 297 501 7.46e-11 63.2
Msa1347490 MtrunA17_Chr3g0082371 32.090 134 83 4 116 248 1 127 7.47e-11 62.8
Msa1347490 MtrunA17_Chr1g0197181 35.644 101 64 1 167 266 3 103 7.91e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1347490 AT3G07040.1 34.409 279 160 3 1 257 244 521 6.76e-49 175
Msa1347490 AT3G50950.2 32.852 277 151 5 21 264 245 519 5.51e-39 146
Msa1347490 AT3G50950.1 32.852 277 151 5 21 264 245 519 5.51e-39 146
Msa1347490 AT1G53350.1 34.276 283 128 9 17 258 245 510 5.98e-38 143
Msa1347490 AT3G46530.1 36.015 261 138 6 36 274 270 523 5.70e-37 140
Msa1347490 AT3G46710.1 32.188 320 182 8 1 297 231 538 2.38e-36 139
Msa1347490 AT5G43470.3 32.407 324 180 9 16 305 246 564 2.60e-36 139
Msa1347490 AT5G43470.2 32.407 324 180 9 16 305 246 564 2.60e-36 139
Msa1347490 AT5G43470.4 32.407 324 180 9 16 305 246 564 2.60e-36 139
Msa1347490 AT5G43470.1 32.407 324 180 9 16 305 246 564 2.60e-36 139
Msa1347490 AT3G46730.1 38.298 235 134 6 67 299 323 548 2.88e-36 138
Msa1347490 AT1G50180.1 33.013 312 169 8 5 277 237 547 5.77e-36 137
Msa1347490 AT5G35450.2 33.579 271 147 7 16 260 244 507 6.98e-36 137
Msa1347490 AT5G35450.1 33.579 271 147 7 16 260 244 507 6.98e-36 137
Msa1347490 AT1G58400.1 29.967 307 191 9 16 299 247 552 3.91e-35 135
Msa1347490 AT1G58390.1 29.375 320 189 7 16 299 246 564 3.47e-34 132
Msa1347490 AT1G58390.2 29.375 320 189 7 16 299 246 564 3.47e-34 132
Msa1347490 AT1G10920.1 31.548 336 190 11 16 313 121 454 4.62e-34 132
Msa1347490 AT1G10920.2 31.548 336 190 11 16 313 121 454 4.62e-34 132
Msa1347490 AT1G10920.4 31.548 336 190 11 16 313 121 454 4.62e-34 132
Msa1347490 AT5G48620.6 32.509 283 156 8 10 262 238 515 6.09e-34 132
Msa1347490 AT5G48620.1 32.509 283 156 8 10 262 238 515 6.09e-34 132
Msa1347490 AT5G48620.4 32.509 283 156 8 10 262 238 515 6.09e-34 132
Msa1347490 AT5G48620.2 32.509 283 156 8 10 262 238 515 6.09e-34 132
Msa1347490 AT5G48620.3 32.509 283 156 8 10 262 238 515 6.09e-34 132
Msa1347490 AT5G48620.5 32.509 283 156 8 10 262 238 515 6.09e-34 132
Msa1347490 AT1G58400.3 29.022 317 191 9 16 299 247 562 8.35e-34 131
Msa1347490 AT1G58400.2 29.022 317 191 9 16 299 247 562 8.35e-34 131
Msa1347490 AT1G59124.1 28.406 345 186 12 2 300 234 563 1.34e-30 122
Msa1347490 AT1G58807.2 28.406 345 186 12 2 300 234 563 1.34e-30 122
Msa1347490 AT1G59124.2 28.406 345 186 12 2 300 234 563 1.50e-30 122
Msa1347490 AT1G58807.1 28.406 345 186 12 2 300 234 563 1.50e-30 122
Msa1347490 AT1G59218.1 28.902 346 185 12 2 301 234 564 2.64e-30 121
Msa1347490 AT1G59218.2 28.902 346 185 12 2 301 234 564 2.64e-30 121
Msa1347490 AT1G59218.3 28.902 346 185 12 2 301 234 564 2.64e-30 121
Msa1347490 AT1G58848.1 28.902 346 185 12 2 301 234 564 2.64e-30 121
Msa1347490 AT1G58848.2 28.902 346 185 12 2 301 234 564 2.64e-30 121
Msa1347490 AT1G59780.2 29.321 324 182 9 10 299 241 551 7.53e-30 120
Msa1347490 AT1G59780.1 29.321 324 182 9 10 299 246 556 8.72e-30 119
Msa1347490 AT1G58602.2 27.778 324 187 8 17 300 251 567 2.36e-29 118
Msa1347490 AT1G58602.1 27.778 324 187 8 17 300 251 567 2.36e-29 118
Msa1347490 AT1G58410.1 26.814 317 201 9 16 302 245 560 4.56e-29 117
Msa1347490 AT1G58410.4 26.814 317 201 9 16 302 245 560 4.56e-29 117
Msa1347490 AT1G58410.2 26.814 317 201 9 16 302 245 560 4.56e-29 117
Msa1347490 AT1G10920.5 31.365 271 168 8 60 313 15 284 6.82e-28 113
Msa1347490 AT1G10920.3 31.365 271 168 8 60 313 15 284 6.82e-28 113
Msa1347490 AT1G59620.2 26.398 322 200 10 18 308 110 425 2.25e-27 112
Msa1347490 AT3G14470.1 29.433 282 161 9 38 296 279 545 2.13e-24 103
Msa1347490 AT3G14470.2 29.433 282 161 9 38 296 279 545 2.13e-24 103
Msa1347490 AT3G14460.1 27.972 286 170 7 21 283 257 529 2.03e-22 98.2
Msa1347490 AT1G12210.1 29.344 259 134 11 28 254 250 491 3.10e-21 94.7
Msa1347490 AT1G12210.3 29.344 259 134 11 28 254 208 449 4.03e-21 94.4
Msa1347490 AT1G12210.2 29.344 259 134 11 28 254 208 449 4.03e-21 94.4
Msa1347490 AT4G10780.1 28.763 299 165 12 28 291 247 532 6.21e-21 94.0
Msa1347490 AT1G12220.1 28.000 250 150 8 28 254 250 492 6.68e-21 93.6
Msa1347490 AT1G12220.2 28.000 250 150 8 28 254 250 492 6.68e-21 93.6
Msa1347490 AT4G10780.2 28.763 299 165 12 28 291 247 532 7.69e-21 93.6
Msa1347490 AT1G12220.3 28.000 250 150 8 28 254 129 371 7.99e-21 93.6
Msa1347490 AT5G47250.1 30.385 260 137 10 22 253 244 487 3.06e-20 91.7
Msa1347490 AT1G12290.4 28.346 254 146 10 28 254 207 451 2.20e-18 86.3
Msa1347490 AT1G12290.3 28.346 254 146 10 28 254 207 451 2.20e-18 86.3
Msa1347490 AT1G12290.2 28.346 254 146 10 28 254 207 451 2.20e-18 86.3
Msa1347490 AT1G12290.1 28.346 254 146 10 28 254 249 493 2.24e-18 86.3
Msa1347490 AT5G63020.1 26.860 242 145 7 29 248 249 480 3.57e-18 85.5
Msa1347490 AT1G15890.2 30.364 247 133 10 29 248 88 322 6.99e-18 84.7
Msa1347490 AT1G15890.1 30.041 243 139 9 29 248 248 482 7.81e-18 84.7
Msa1347490 AT1G63350.1 30.400 250 140 11 31 254 249 490 4.42e-17 82.4
Msa1347490 AT1G63350.3 30.400 250 140 11 31 254 249 490 4.94e-17 82.4
Msa1347490 AT1G63350.2 30.400 250 140 11 31 254 249 490 4.94e-17 82.4
Msa1347490 AT1G63350.4 30.400 250 140 11 31 254 249 490 5.35e-17 82.0
Msa1347490 AT1G61190.4 27.473 273 139 14 8 248 239 484 1.38e-16 80.9
Msa1347490 AT1G61190.2 27.473 273 139 14 8 248 239 484 1.48e-16 80.9
Msa1347490 AT1G61190.3 27.473 273 139 14 8 248 239 484 1.48e-16 80.9
Msa1347490 AT1G61190.1 27.473 273 139 14 8 248 239 484 1.78e-16 80.5
Msa1347490 AT1G12280.1 25.703 249 156 7 28 254 250 491 2.66e-16 80.1
Msa1347490 AT4G26090.1 24.590 305 179 11 33 312 252 530 3.83e-16 79.7
Msa1347490 AT1G61300.2 27.019 322 161 15 8 288 127 415 9.63e-16 78.2
Msa1347490 AT1G61300.1 27.019 322 161 15 8 288 127 415 1.11e-15 78.2
Msa1347490 AT1G62630.1 28.112 249 135 11 31 248 249 484 1.34e-15 77.8
Msa1347490 AT1G61310.1 25.407 307 177 10 8 277 240 531 3.65e-15 76.6
Msa1347490 AT1G61180.1 27.170 265 147 9 8 248 238 480 1.42e-14 74.7
Msa1347490 AT1G61180.2 27.170 265 147 9 8 248 238 480 1.51e-14 74.7
Msa1347490 AT1G51480.1 27.136 199 115 6 29 202 247 440 1.76e-14 74.7
Msa1347490 AT4G27190.1 26.978 278 157 10 33 277 244 508 2.40e-14 74.3
Msa1347490 AT5G43730.4 28.287 251 133 12 29 248 246 480 5.34e-14 73.2
Msa1347490 AT5G43730.1 28.287 251 133 12 29 248 246 480 5.34e-14 73.2
Msa1347490 AT5G43730.3 28.287 251 133 12 29 248 246 480 5.34e-14 73.2
Msa1347490 AT5G43730.2 28.287 251 133 12 29 248 246 480 5.34e-14 73.2
Msa1347490 AT5G43730.5 28.287 251 133 12 29 248 246 480 5.34e-14 73.2
Msa1347490 AT5G43740.1 27.092 251 136 11 29 248 245 479 3.00e-13 70.9
Msa1347490 AT5G43740.2 27.092 251 136 11 29 248 245 479 3.00e-13 70.9
Msa1347490 AT5G05400.2 32.450 151 85 6 100 248 168 303 1.05e-12 68.9
Msa1347490 AT5G05400.3 32.450 151 85 6 100 248 168 303 1.05e-12 68.9
Msa1347490 AT5G05400.1 32.450 151 85 6 100 248 337 472 1.07e-12 69.3
Msa1347490 AT4G27220.1 35.948 153 79 8 100 245 297 437 4.77e-12 67.0
Msa1347490 AT4G27220.2 35.948 153 79 8 100 245 305 445 4.83e-12 67.0

Find 4 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTACTTGCGGCGAAAA+AGG 0.307778 tig0009817:-901 Msa1347490:CDS
TTGTTGTGTTTGATGATGTT+TGG 0.364772 tig0009817:-874 Msa1347490:CDS
AAACGAAGAAGATCCTCCTA+AGG 0.588796 tig0009817:-966 Msa1347490:CDS
ATGAAGTGACAAACTACTTG+CGG 0.619816 tig0009817:-910 Msa1347490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTGTTAAAAAATGTAA+CGG - tig0009817:379-398 Msa1347490:CDS 15.0%
!! GAAATTGTTAAAAAATGTAA+CGG - tig0009817:379-398 Msa1347490:CDS 15.0%
!!! GCTGTAATTGATAATAAAAA+TGG - tig0009817:171-190 Msa1347490:CDS 20.0%
!!! ATATAAGAGGATTTTTTTAC+AGG + tig0009817:241-260 Msa1347490:intergenic 20.0%
!! AAAGATTGTTCTTCATTTAA+AGG + tig0009817:283-302 Msa1347490:intergenic 20.0%
!! TTTAAATGAAGAACAATCTT+TGG - tig0009817:282-301 Msa1347490:CDS 20.0%
!! AATCTTCATTTGTAATAACA+AGG + tig0009817:963-982 Msa1347490:intergenic 20.0%
!!! GCTGTAATTGATAATAAAAA+TGG - tig0009817:171-190 Msa1347490:CDS 20.0%
!!! ATATAAGAGGATTTTTTTAC+AGG + tig0009817:241-260 Msa1347490:intergenic 20.0%
!! AAAGATTGTTCTTCATTTAA+AGG + tig0009817:283-302 Msa1347490:intergenic 20.0%
!! TTTAAATGAAGAACAATCTT+TGG - tig0009817:282-301 Msa1347490:CDS 20.0%
!! AATCTTCATTTGTAATAACA+AGG + tig0009817:963-982 Msa1347490:intergenic 20.0%
! ATTTGAAAAATATCCTTAGG+AGG + tig0009817:42-61 Msa1347490:intergenic 25.0%
!!! TCCTAAGGATATTTTTCAAA+TGG - tig0009817:41-60 Msa1347490:CDS 25.0%
! TCCATTTGAAAAATATCCTT+AGG + tig0009817:45-64 Msa1347490:intergenic 25.0%
!!! ATATTTTTCAAATGGATCGA+GGG - tig0009817:49-68 Msa1347490:CDS 25.0%
!! GATTTAACTTCATAATCTTC+TGG + tig0009817:607-626 Msa1347490:intergenic 25.0%
!! TTAAATCCTCAAACTTTTCA+AGG + tig0009817:816-835 Msa1347490:intergenic 25.0%
! TTGTAAAACTTTAGCAACAT+TGG + tig0009817:3-22 Msa1347490:intergenic 25.0%
! ATTTGAAAAATATCCTTAGG+AGG + tig0009817:42-61 Msa1347490:intergenic 25.0%
!!! TCCTAAGGATATTTTTCAAA+TGG - tig0009817:41-60 Msa1347490:CDS 25.0%
! TCCATTTGAAAAATATCCTT+AGG + tig0009817:45-64 Msa1347490:intergenic 25.0%
!!! ATATTTTTCAAATGGATCGA+GGG - tig0009817:49-68 Msa1347490:CDS 25.0%
!! GATTTAACTTCATAATCTTC+TGG + tig0009817:607-626 Msa1347490:intergenic 25.0%
!! TTAAATCCTCAAACTTTTCA+AGG + tig0009817:816-835 Msa1347490:intergenic 25.0%
!! GATATTTTTCAAATGGATCG+AGG - tig0009817:48-67 Msa1347490:CDS 30.0%
!! TTGTTGTGTTTGATGATGTT+TGG - tig0009817:118-137 Msa1347490:CDS 30.0%
!! ATGTTTGGAGTGTACATTTT+TGG - tig0009817:133-152 Msa1347490:CDS 30.0%
!! TGTTTGGAGTGTACATTTTT+GGG - tig0009817:134-153 Msa1347490:CDS 30.0%
! TTTGGAGTTGTTCAATAAGA+AGG - tig0009817:300-319 Msa1347490:CDS 30.0%
AAGAGAAAAATGTGTTTGAG+TGG - tig0009817:446-465 Msa1347490:CDS 30.0%
ATGAAAGATACACATCTAGT+TGG - tig0009817:502-521 Msa1347490:CDS 30.0%
TGAAAGATACACATCTAGTT+GGG - tig0009817:503-522 Msa1347490:CDS 30.0%
! GTTGGGATAAAAGAAGTTTT+AGG - tig0009817:520-539 Msa1347490:CDS 30.0%
!!! AAGTCATGCTTGTTGTATTT+TGG - tig0009817:574-593 Msa1347490:CDS 30.0%
TATGATCCTTGAAAAGTTTG+AGG - tig0009817:807-826 Msa1347490:intron 30.0%
GTATTGAAAGTTCACATGTT+CGG - tig0009817:932-951 Msa1347490:CDS 30.0%
ATTCATATGTATCCTTTCCA+AGG - tig0009817:980-999 Msa1347490:CDS 30.0%
!! GATATTTTTCAAATGGATCG+AGG - tig0009817:48-67 Msa1347490:CDS 30.0%
!! TTGTTGTGTTTGATGATGTT+TGG - tig0009817:118-137 Msa1347490:CDS 30.0%
!! ATGTTTGGAGTGTACATTTT+TGG - tig0009817:133-152 Msa1347490:CDS 30.0%
!! TGTTTGGAGTGTACATTTTT+GGG - tig0009817:134-153 Msa1347490:CDS 30.0%
! TTTGGAGTTGTTCAATAAGA+AGG - tig0009817:300-319 Msa1347490:CDS 30.0%
AAGAGAAAAATGTGTTTGAG+TGG - tig0009817:446-465 Msa1347490:CDS 30.0%
ATGAAAGATACACATCTAGT+TGG - tig0009817:502-521 Msa1347490:CDS 30.0%
TGAAAGATACACATCTAGTT+GGG - tig0009817:503-522 Msa1347490:CDS 30.0%
! GTTGGGATAAAAGAAGTTTT+AGG - tig0009817:520-539 Msa1347490:CDS 30.0%
!!! AAGTCATGCTTGTTGTATTT+TGG - tig0009817:574-593 Msa1347490:CDS 30.0%
TATGATCCTTGAAAAGTTTG+AGG - tig0009817:807-826 Msa1347490:intron 30.0%
GTATTGAAAGTTCACATGTT+CGG - tig0009817:932-951 Msa1347490:CDS 30.0%
ATTCATATGTATCCTTTCCA+AGG - tig0009817:980-999 Msa1347490:CDS 30.0%
ATGAAGTGACAAACTACTTG+CGG - tig0009817:82-101 Msa1347490:CDS 35.0%
ATCCTCTTATATTGAAGTGC+TGG - tig0009817:249-268 Msa1347490:CDS 35.0%
! AAGGCATTCAGATTTGACTA+TGG - tig0009817:319-338 Msa1347490:CDS 35.0%
!! AAAGAGATTGATTCGACAGT+GGG - tig0009817:627-646 Msa1347490:CDS 35.0%
!! AGAGTTGATGGTAAAGCTAA+AGG - tig0009817:757-776 Msa1347490:intron 35.0%
! TTTTGCAAGCATATCAGTGA+AGG - tig0009817:838-857 Msa1347490:CDS 35.0%
! AAGTGGTTGTTATTGATAGG+CGG + tig0009817:894-913 Msa1347490:intergenic 35.0%
! CAGAAGTGGTTGTTATTGAT+AGG + tig0009817:897-916 Msa1347490:intergenic 35.0%
ATGAAGTGACAAACTACTTG+CGG - tig0009817:82-101 Msa1347490:CDS 35.0%
ATCCTCTTATATTGAAGTGC+TGG - tig0009817:249-268 Msa1347490:CDS 35.0%
! AAGGCATTCAGATTTGACTA+TGG - tig0009817:319-338 Msa1347490:CDS 35.0%
!! AAAGAGATTGATTCGACAGT+GGG - tig0009817:627-646 Msa1347490:CDS 35.0%
!! AGAGTTGATGGTAAAGCTAA+AGG - tig0009817:757-776 Msa1347490:intron 35.0%
! TTTTGCAAGCATATCAGTGA+AGG - tig0009817:838-857 Msa1347490:CDS 35.0%
! AAGTGGTTGTTATTGATAGG+CGG + tig0009817:894-913 Msa1347490:intergenic 35.0%
! CAGAAGTGGTTGTTATTGAT+AGG + tig0009817:897-916 Msa1347490:intergenic 35.0%
AAACGAAGAAGATCCTCCTA+AGG - tig0009817:26-45 Msa1347490:CDS 40.0%
TACAGGACAACACAACATCT+AGG + tig0009817:224-243 Msa1347490:intergenic 40.0%
CTCCAGCACTTCAATATAAG+AGG + tig0009817:254-273 Msa1347490:intergenic 40.0%
GCATTCAGATTTGACTATGG+TGG - tig0009817:322-341 Msa1347490:CDS 40.0%
AAGCATGACTTGAGAGAGTA+AGG + tig0009817:565-584 Msa1347490:intergenic 40.0%
!! CAAAGAGATTGATTCGACAG+TGG - tig0009817:626-645 Msa1347490:CDS 40.0%
! AGAGTTGATCCATAGAAGCT+TGG - tig0009817:717-736 Msa1347490:CDS 40.0%
ATACTTGCACCAAGCTTCTA+TGG + tig0009817:729-748 Msa1347490:intergenic 40.0%
!! AAGCTTGGTGCAAGTATCTT+CGG - tig0009817:732-751 Msa1347490:intron 40.0%
GTATCTTCGGTTAGAGTTGA+TGG - tig0009817:745-764 Msa1347490:intron 40.0%
GGTGGACAATCATACTTAAG+TGG - tig0009817:859-878 Msa1347490:CDS 40.0%
CTCAATGAAGTCATCAGAAG+TGG + tig0009817:911-930 Msa1347490:intergenic 40.0%
AAACGAAGAAGATCCTCCTA+AGG - tig0009817:26-45 Msa1347490:CDS 40.0%
TACAGGACAACACAACATCT+AGG + tig0009817:224-243 Msa1347490:intergenic 40.0%
CTCCAGCACTTCAATATAAG+AGG + tig0009817:254-273 Msa1347490:intergenic 40.0%
GCATTCAGATTTGACTATGG+TGG - tig0009817:322-341 Msa1347490:CDS 40.0%
AAGCATGACTTGAGAGAGTA+AGG + tig0009817:565-584 Msa1347490:intergenic 40.0%
!! CAAAGAGATTGATTCGACAG+TGG - tig0009817:626-645 Msa1347490:CDS 40.0%
! AGAGTTGATCCATAGAAGCT+TGG - tig0009817:717-736 Msa1347490:CDS 40.0%
ATACTTGCACCAAGCTTCTA+TGG + tig0009817:729-748 Msa1347490:intergenic 40.0%
!! AAGCTTGGTGCAAGTATCTT+CGG - tig0009817:732-751 Msa1347490:intron 40.0%
GTATCTTCGGTTAGAGTTGA+TGG - tig0009817:745-764 Msa1347490:intron 40.0%
GGTGGACAATCATACTTAAG+TGG - tig0009817:859-878 Msa1347490:CDS 40.0%
CTCAATGAAGTCATCAGAAG+TGG + tig0009817:911-930 Msa1347490:intergenic 40.0%
CAAACTACTTGCGGCGAAAA+AGG - tig0009817:91-110 Msa1347490:CDS 45.0%
CTATGGTGGTTGTTGTCCAA+AGG - tig0009817:336-355 Msa1347490:CDS 45.0%
TGTTGTCCAAAGGAGCTCAT+TGG - tig0009817:346-365 Msa1347490:CDS 45.0%
GCTATACCAATGAGCTCCTT+TGG + tig0009817:355-374 Msa1347490:intergenic 45.0%
CCAATGGCAACAATTGCTAG+CGG + tig0009817:409-428 Msa1347490:intergenic 45.0%
CTAGCAATTGTTGCCATTGG+AGG - tig0009817:409-428 Msa1347490:CDS 45.0%
TGCAGACAAAAGTCCTCCAA+TGG + tig0009817:425-444 Msa1347490:intergenic 45.0%
! ACTTTGGAAGACGTTGCAGA+AGG - tig0009817:685-704 Msa1347490:CDS 45.0%
TGCAAGCATATCAGTGAAGG+TGG - tig0009817:841-860 Msa1347490:CDS 45.0%
CAAACTACTTGCGGCGAAAA+AGG - tig0009817:91-110 Msa1347490:CDS 45.0%
CTATGGTGGTTGTTGTCCAA+AGG - tig0009817:336-355 Msa1347490:CDS 45.0%
TGTTGTCCAAAGGAGCTCAT+TGG - tig0009817:346-365 Msa1347490:CDS 45.0%
GCTATACCAATGAGCTCCTT+TGG + tig0009817:355-374 Msa1347490:intergenic 45.0%
CCAATGGCAACAATTGCTAG+CGG + tig0009817:409-428 Msa1347490:intergenic 45.0%
CTAGCAATTGTTGCCATTGG+AGG - tig0009817:409-428 Msa1347490:CDS 45.0%
TGCAGACAAAAGTCCTCCAA+TGG + tig0009817:425-444 Msa1347490:intergenic 45.0%
! ACTTTGGAAGACGTTGCAGA+AGG - tig0009817:685-704 Msa1347490:CDS 45.0%
TGCAAGCATATCAGTGAAGG+TGG - tig0009817:841-860 Msa1347490:CDS 45.0%
CCGCTAGCAATTGTTGCCAT+TGG - tig0009817:406-425 Msa1347490:CDS 50.0%
!! GAGATTGATTCGACAGTGGG+TGG - tig0009817:630-649 Msa1347490:CDS 50.0%
AAGGGTTCGTGAAGGAGGAA+AGG - tig0009817:656-675 Msa1347490:CDS 50.0%
AGGGTTCGTGAAGGAGGAAA+GGG - tig0009817:657-676 Msa1347490:CDS 50.0%
CCGCTAGCAATTGTTGCCAT+TGG - tig0009817:406-425 Msa1347490:CDS 50.0%
!! GAGATTGATTCGACAGTGGG+TGG - tig0009817:630-649 Msa1347490:CDS 50.0%
AAGGGTTCGTGAAGGAGGAA+AGG - tig0009817:656-675 Msa1347490:CDS 50.0%
AGGGTTCGTGAAGGAGGAAA+GGG - tig0009817:657-676 Msa1347490:CDS 50.0%
ATTCGACAGTGGGTGGCTGA+AGG - tig0009817:637-656 Msa1347490:CDS 55.0%
TTCGACAGTGGGTGGCTGAA+GGG - tig0009817:638-657 Msa1347490:CDS 55.0%
GGGTTCGTGAAGGAGGAAAG+GGG - tig0009817:658-677 Msa1347490:CDS 55.0%
GGTTCGTGAAGGAGGAAAGG+GGG - tig0009817:659-678 Msa1347490:CDS 55.0%
GGAGGAAAGGGGGAAGACTT+TGG - tig0009817:669-688 Msa1347490:CDS 55.0%
ATTCGACAGTGGGTGGCTGA+AGG - tig0009817:637-656 Msa1347490:CDS 55.0%
TTCGACAGTGGGTGGCTGAA+GGG - tig0009817:638-657 Msa1347490:CDS 55.0%
GGGTTCGTGAAGGAGGAAAG+GGG - tig0009817:658-677 Msa1347490:CDS 55.0%
GGTTCGTGAAGGAGGAAAGG+GGG - tig0009817:659-678 Msa1347490:CDS 55.0%
GGAGGAAAGGGGGAAGACTT+TGG - tig0009817:669-688 Msa1347490:CDS 55.0%
GGTGGCTGAAGGGTTCGTGA+AGG - tig0009817:648-667 Msa1347490:CDS 60.0%
GGCTGAAGGGTTCGTGAAGG+AGG - tig0009817:651-670 Msa1347490:CDS 60.0%
GGTGGCTGAAGGGTTCGTGA+AGG - tig0009817:648-667 Msa1347490:CDS 60.0%
GGCTGAAGGGTTCGTGAAGG+AGG - tig0009817:651-670 Msa1347490:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0009817 gene 3 1011 3 ID=Msa1347490;Name=Msa1347490
tig0009817 mRNA 3 1011 3 ID=Msa1347490-mRNA-1;Parent=Msa1347490;Name=Msa1347490-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|313
tig0009817 exon 819 1011 819 ID=Msa1347490-mRNA-1:exon:5913;Parent=Msa1347490-mRNA-1
tig0009817 exon 3 748 3 ID=Msa1347490-mRNA-1:exon:5912;Parent=Msa1347490-mRNA-1
tig0009817 CDS 819 1011 819 ID=Msa1347490-mRNA-1:cds;Parent=Msa1347490-mRNA-1
tig0009817 CDS 3 748 3 ID=Msa1347490-mRNA-1:cds;Parent=Msa1347490-mRNA-1
Gene Sequence

>Msa1347490

ATGTTGCTAAAGTTTTACAAACAAAACGAAGAAGATCCTCCTAAGGATATTTTTCAAATGGATCGAGGGTCATTGACTGATGAAGTGACAAACTACTTGCGGCGAAAAAGGTATGTTGTTGTGTTTGATGATGTTTGGAGTGTACATTTTTGGGATGATATTGAATTTGCTGTAATTGATAATAAAAATGGAATGCTGGAGTTGCAACCTTTAAATGAAGAACAATCTTTGGAGTTGTTCAATAAGAAGGCATTCAGATTTGACTATGGTGGTTGTTGTCCAAAGGAGCTCATTGGTATAGCTTATGAAATTGTTAAAAAATGTAACGGTTTACCGCTAGCAATTGTTGCCATTGGAGGACTTTTGTCTGCAAAAGAGAAAAATGTGTTTGAGTGGCAAAGATTTAATGAGAATCTAAGTTTAGAGCTAATGAAAGATACACATCTAGTTGGGATAAAAGAAGTTTTAGGCTTAAGTTACGATGATTTGCCTTACTCTCTCAAGTCATGCTTGTTGTATTTTGGAATATATCCAGAAGATTATGAAGTTAAATCAAAGAGATTGATTCGACAGTGGGTGGCTGAAGGGTTCGTGAAGGAGGAAAGGGGGAAGACTTTGGAAGACGTTGCAGAAGGATATTTAACAGAGTTGATCCATAGAAGCTTGGTGCAAGTATCTTCGGTTAGAGTTGATGGTAAAGCTAAAGGTTGTCATGTTCATGATCTAATACGCGATATGATCCTTGAAAAGTTTGAGGATTTAAATTTTTGCAAGCATATCAGTGAAGGTGGACAATCATACTTAAGTGGAACATTTCGCCGCCTATCAATAACAACCACTTCTGATGACTTCATTGAGCGTATTGAAAGTTCACATGTTCGGTCAATCCTTGTTATTACAAATGAAGATTCATATGTATCCTTTCCAAGGAGAATCCCA
Protein sequence

>Msa1347490

MLLKFYKQNEEDPPKDIFQMDRGSLTDEVTNYLRRKRYVVVFDDVWSVHFWDDIEFAVIDNKNGMLELQPLNEEQSLELFNKKAFRFDYGGCCPKELIGIAYEIVKKCNGLPLAIVAIGGLLSAKEKNVFEWQRFNENLSLELMKDTHLVGIKEVLGLSYDDLPYSLKSCLLYFGIYPEDYEVKSKRLIRQWVAEGFVKEERGKTLEDVAEGYLTELIHRSLVQVSSVRVDGKAKGCHVHDLIRDMILEKFEDLNFCKHISEGGQSYLSGTFRRLSITTTSDDFIERIESSHVRSILVITNEDSYVSFPRRIP