AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0567020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567020 MtrunA17_Chr8g0381741 97.756 312 6 1 47 358 1 311 0.0 621
Msa0567020 MtrunA17_Chr3g0123691 59.574 329 89 11 47 358 1 302 3.07e-108 318
Msa0567020 MtrunA17_Chr3g0119291 38.871 319 115 7 47 349 1 255 7.63e-59 191
Msa0567020 MtrunA17_Chr8g0362751 47.059 187 76 4 91 272 81 249 2.09e-40 144
Msa0567020 MtrunA17_Chr5g0415941 43.902 205 80 4 89 264 77 275 2.56e-40 144
Msa0567020 MtrunA17_Chr5g0416391 44.565 184 93 3 78 254 57 238 2.31e-38 138
Msa0567020 MtrunA17_Chr6g0450991 61.111 108 42 0 99 206 66 173 1.06e-37 137
Msa0567020 MtrunA17_Chr6g0453021 61.682 107 40 1 89 195 86 191 1.33e-37 136
Msa0567020 MtrunA17_Chr8g0362151 54.400 125 55 1 84 208 63 185 6.45e-37 134
Msa0567020 MtrunA17_Chr4g0060031 54.400 125 56 1 72 196 68 191 9.03e-34 127
Msa0567020 MtrunA17_Chr7g0217111 58.763 97 40 0 99 195 79 175 1.15e-29 115
Msa0567020 MtrunA17_Chr8g0346251 48.544 103 53 0 107 209 48 150 2.53e-27 108
Msa0567020 MtrunA17_Chr7g0265521 51.485 101 42 1 99 199 62 155 1.38e-26 105
Msa0567020 MtrunA17_Chr3g0127511 53.846 91 42 0 102 192 40 130 5.07e-25 101
Msa0567020 MtrunA17_Chr1g0179581 54.321 81 37 0 99 179 27 107 7.86e-25 97.4
Msa0567020 MtrunA17_Chr5g0403701 54.455 101 37 1 100 200 53 144 1.17e-22 94.4
Msa0567020 MtrunA17_Chr4g0055851 51.887 106 42 2 89 194 111 207 5.09e-21 91.7
Msa0567020 MtrunA17_Chr5g0403691 61.972 71 27 0 100 170 53 123 3.41e-20 87.8
Msa0567020 MtrunA17_Chr4g0054421 48.113 106 46 2 89 194 118 214 3.80e-18 83.2
Msa0567020 MtrunA17_Chr1g0175651 44.000 125 60 2 73 194 124 241 4.15e-18 83.6
Msa0567020 MtrunA17_Chr5g0399491 49.057 106 45 2 89 194 127 223 6.17e-18 83.2
Msa0567020 MtrunA17_Chr4g0071411 47.253 91 41 1 103 193 91 174 9.21e-18 81.3
Msa0567020 MtrunA17_Chr1g0151971 50.000 96 41 1 99 194 129 217 1.52e-17 82.0
Msa0567020 MtrunA17_Chr2g0308611 44.340 106 52 1 89 194 189 287 3.96e-17 81.3
Msa0567020 MtrunA17_Chr5g0400781 47.423 97 44 1 98 194 121 210 1.19e-16 79.0
Msa0567020 MtrunA17_Chr8g0335131 48.958 96 42 1 99 194 145 233 1.57e-16 79.3
Msa0567020 MtrunA17_Chr7g0258831 44.643 112 52 2 86 194 143 247 1.70e-16 79.0
Msa0567020 MtrunA17_Chr3g0135331 46.429 84 45 0 88 171 133 216 5.81e-14 71.6
Msa0567020 MtrunA17_Chr4g0044091 46.154 91 48 1 95 185 61 150 3.59e-13 67.8
Msa0567020 MtrunA17_Chr2g0299031 42.017 119 56 4 89 207 76 181 1.03e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0567020 AT2G22430.1 46.957 345 117 12 46 358 1 311 2.51e-81 251
Msa0567020 AT4G40060.1 44.144 333 124 12 47 357 1 293 3.00e-75 234
Msa0567020 AT5G65310.1 42.566 343 134 16 47 358 1 311 5.85e-64 206
Msa0567020 AT5G65310.2 43.377 302 116 12 80 358 24 293 8.11e-61 197
Msa0567020 AT3G01470.1 47.097 155 72 1 99 243 67 221 1.29e-37 136
Msa0567020 AT1G69780.1 58.559 111 46 0 98 208 83 193 3.71e-37 135
Msa0567020 AT3G01220.1 56.364 110 48 0 86 195 73 182 2.98e-35 130
Msa0567020 AT5G15150.1 41.148 209 101 7 47 255 69 255 3.11e-35 131
Msa0567020 AT1G26960.1 56.757 111 48 0 98 208 69 179 3.34e-33 124
Msa0567020 AT2G46680.1 50.400 125 60 1 101 223 33 157 1.64e-31 120
Msa0567020 AT2G46680.2 48.780 123 63 0 101 223 33 155 1.79e-30 117
Msa0567020 AT3G61890.1 46.218 119 61 1 103 221 33 148 2.11e-28 110
Msa0567020 AT1G27045.1 56.481 108 46 1 100 207 68 174 2.31e-28 110
Msa0567020 AT1G27045.5 56.481 108 46 1 100 207 25 131 3.80e-28 108
Msa0567020 AT1G27045.3 56.481 108 46 1 100 207 25 131 3.80e-28 108
Msa0567020 AT1G27045.2 56.481 108 46 1 100 207 17 123 4.03e-28 108
Msa0567020 AT5G03790.1 53.000 100 40 1 100 199 77 169 9.75e-26 103
Msa0567020 AT1G27045.4 58.065 93 39 0 100 192 68 160 2.44e-25 103
Msa0567020 AT5G03790.2 62.500 72 27 0 100 171 77 148 8.67e-24 97.4
Msa0567020 AT2G36610.1 45.794 107 43 2 99 197 70 169 9.24e-22 91.7
Msa0567020 AT2G18550.1 36.047 172 80 5 100 261 61 212 4.40e-21 90.9
Msa0567020 AT5G66700.1 48.980 98 50 0 100 197 71 168 6.47e-21 90.5
Msa0567020 AT4G36740.1 52.577 97 39 1 100 196 55 144 2.78e-20 88.6
Msa0567020 AT4G36740.2 52.577 97 39 1 100 196 56 145 2.90e-20 88.6
Msa0567020 AT5G53980.1 44.444 99 55 0 100 198 11 109 2.18e-19 84.3
Msa0567020 AT5G06710.1 48.113 106 44 2 89 194 183 277 6.02e-18 84.3
Msa0567020 AT3G60390.1 46.226 106 50 1 89 194 151 249 5.55e-17 81.3
Msa0567020 AT4G37790.1 46.226 106 47 2 89 194 118 213 1.53e-16 79.3
Msa0567020 AT4G16780.1 47.170 106 46 2 89 194 121 216 1.62e-16 79.3
Msa0567020 AT2G44910.1 47.917 96 43 1 99 194 162 250 4.64e-16 78.6
Msa0567020 AT2G22800.1 46.226 106 47 2 89 194 105 200 9.42e-16 77.0
Msa0567020 AT4G17460.1 46.226 106 50 1 89 194 124 222 1.67e-15 76.3
Msa0567020 AT5G47370.1 46.226 106 50 1 89 194 119 217 3.92e-15 75.5
Msa0567020 AT2G01430.1 36.111 144 81 3 86 225 122 258 4.93e-15 74.7
Msa0567020 AT5G06710.4 52.381 63 26 1 89 151 183 241 2.10e-11 64.3
Msa0567020 AT2G01430.2 47.143 70 34 1 86 152 122 191 2.18e-11 63.2

Find 109 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTTAATTATAAGATTA+AGG 0.225386 4_1:-68270491 None:intergenic
GGTAAAGGAGGAAAGATAAA+TGG 0.246153 4_1:-68272590 None:intergenic
TCATCTCATCTAAGCGTTAT+TGG 0.260502 4_1:+68272809 Msa0567020:three_prime_UTR
TTTGGATCCACAATACTAAA+AGG 0.271471 4_1:-68272696 None:intergenic
GCAAGCTTCACTTTCCTATC+TGG 0.289532 4_1:-68271232 None:intergenic
CTTGGCAGCTCCGATTCTTT+AGG 0.293153 4_1:+68270528 Msa0567020:CDS
GGTAGACACATGGGAGTTAA+TGG 0.303946 4_1:+68270302 Msa0567020:CDS
AAGTTTAAGTGCATCATAAT+TGG 0.307318 4_1:-68271359 None:intergenic
AACGCAGCAATTTCTTCATC+TGG 0.309720 4_1:+68272004 Msa0567020:CDS
AAACAATTGGAAAGAGATTA+TGG 0.321657 4_1:+68271325 Msa0567020:CDS
CATTCTTAGATCCGATTCTA+AGG 0.324209 4_1:+68271868 Msa0567020:CDS
ATAATCTCTTTCCAATTGTT+TGG 0.328373 4_1:-68271323 None:intergenic
CCATACACTTGGTTGTTCCT+TGG 0.333790 4_1:-68271073 None:intergenic
GAAGATATTTACTATTCTAA+TGG 0.344689 4_1:+68272559 Msa0567020:three_prime_UTR
GGGAGAGTTTATCGCACATT+TGG 0.360485 4_1:-68272714 None:intergenic
CATTGATTACACAGCTTTCA+AGG 0.373554 4_1:-68272945 None:intergenic
AAAGCAAAGTTAAAACTCTT+GGG 0.374481 4_1:-68272735 None:intergenic
GAAAGCAAAGTTAAAACTCT+TGG 0.393346 4_1:-68272736 None:intergenic
CGTAATTGCACGTGCTTACG+TGG 0.400308 4_1:-68272664 None:intergenic
TTCAGAACAATTAAACTTCA+AGG 0.401312 4_1:-68272071 None:intergenic
TGGATTTGAACATAGGATCT+TGG 0.405961 4_1:+68272765 Msa0567020:three_prime_UTR
ATTGTTAACCAGTGCCCCTC+GGG 0.410868 4_1:+68272888 Msa0567020:three_prime_UTR
TGTGGATCAAGTTAAGGCTT+TGG 0.415440 4_1:+68271177 Msa0567020:CDS
GTTATGTACCTCTTTGAGTA+AGG 0.416508 4_1:-68271413 None:intergenic
TTCAAAACCGTCGTGCTAGA+TGG 0.422496 4_1:+68271296 Msa0567020:CDS
CCAAGAGTGGATTTGAACAT+AGG 0.425376 4_1:+68272758 Msa0567020:three_prime_UTR
GCTTGGTTTGCAACCAAGAC+AGG 0.426710 4_1:+68271261 Msa0567020:CDS
GTAAAGGAGGAAAGATAAAT+GGG 0.434458 4_1:-68272589 None:intergenic
CCAAGGAACAACCAAGTGTA+TGG 0.442867 4_1:+68271073 Msa0567020:CDS
AATATGAATTAACCTGTTGT+TGG 0.443287 4_1:-68270570 None:intergenic
CCTATGTTCAAATCCACTCT+TGG 0.451357 4_1:-68272758 None:intergenic
GTGAAGCTTGCTCAAGAGCT+TGG 0.455028 4_1:+68271244 Msa0567020:CDS
AACCAAGACAGGTTGCTGTT+TGG 0.456352 4_1:+68271272 Msa0567020:CDS
AACAACCACCAACGCTTCAA+TGG 0.458388 4_1:+68272209 Msa0567020:CDS
ATGACAATTTGTCCAACAAC+AGG 0.459440 4_1:+68270558 Msa0567020:CDS
ACCAGTGCCCCGAGGGGCAC+TGG 0.460538 4_1:-68272896 None:intergenic
TCAGACGCAGTTTGTGAAGA+TGG 0.461193 4_1:+68272135 Msa0567020:CDS
GTGCTTACGTGGGTGTTACT+CGG 0.461476 4_1:-68272653 None:intergenic
TTCTTTAACCAGTGCCCCGA+GGG 0.463957 4_1:-68272903 None:intergenic
ACCAGTGCCCCTCGGGGCAC+TGG 0.464112 4_1:+68272895 Msa0567020:three_prime_UTR
ACGCTTAGATGAGATGATAT+AGG 0.471754 4_1:-68272803 None:intergenic
ACTAAGTGTGGATCAAGTTA+AGG 0.472988 4_1:+68271171 Msa0567020:CDS
AACCAAACAGCAACCTGTCT+TGG 0.475030 4_1:-68271274 None:intergenic
GTAGTTTAAGTCCTTAGAAT+CGG 0.480930 4_1:-68271879 None:intergenic
ACGCAGCAATTTCTTCATCT+GGG 0.483849 4_1:+68272005 Msa0567020:CDS
GAAGAACCGTCTTTGAAATC+CGG 0.484012 4_1:-68271944 None:intergenic
AGTCTTCGTTTCTTCTGCCC+TGG 0.485359 4_1:-68271151 None:intergenic
AGTTGCTTCACTATTTCCTC+CGG 0.491792 4_1:+68271925 Msa0567020:CDS
GAGAGAAGTTAAAGAAAGTG+AGG 0.495996 4_1:+68272384 Msa0567020:three_prime_UTR
AATGGTGATAAGTGGTTGTA+TGG 0.498069 4_1:+68270320 Msa0567020:CDS
GAGAAGTTAAAGAAAGTGAG+GGG 0.504805 4_1:+68272386 Msa0567020:three_prime_UTR
TAGATGGAAGACCAAACAAT+TGG 0.511361 4_1:+68271312 Msa0567020:CDS
CGCAGCAATTTCTTCATCTG+GGG 0.511842 4_1:+68272006 Msa0567020:CDS
GCGTTATTGGATCGTTCTAT+CGG 0.512212 4_1:+68272822 Msa0567020:three_prime_UTR
CATGAGAGCACCTAAAGAAT+CGG 0.517449 4_1:-68270538 None:intergenic
TTAACTTTGCTTTCCAAGAG+TGG 0.517713 4_1:+68272745 Msa0567020:three_prime_UTR
GAAATTCCCTTCCATACACT+TGG 0.519570 4_1:-68271084 None:intergenic
TATTGTTAACCAGTGCCCCT+CGG 0.530749 4_1:+68272887 Msa0567020:three_prime_UTR
ACTCATGAGTTTAATTTGAG+AGG 0.531600 4_1:+68272273 Msa0567020:three_prime_UTR
AATGGTATTGTTCAGAGGAG+TGG 0.534262 4_1:+68272227 Msa0567020:CDS
TTCATCTAGTCCTTCCATCA+CGG 0.534291 4_1:-68271110 None:intergenic
GTGGATGATCGCATGGTGTA+GGG 0.534475 4_1:+68272423 Msa0567020:three_prime_UTR
ACCTTGCATAGTAGTTCTGT+CGG 0.537846 4_1:+68272610 Msa0567020:three_prime_UTR
ATATAGAAGAAGAGAGTCCA+AGG 0.540750 4_1:+68271056 Msa0567020:intron
AAAACAAGCTTGAACCAGAT+AGG 0.540809 4_1:+68271218 Msa0567020:CDS
AGAGAAGTTAAAGAAAGTGA+GGG 0.544627 4_1:+68272385 Msa0567020:three_prime_UTR
ATGGAAGGACTAGATGAAGA+AGG 0.546306 4_1:+68271115 Msa0567020:CDS
CTTAGAATCGGATCTAAGAA+TGG 0.550362 4_1:-68271867 None:intergenic
TTTCCTCCGGATTTCAAAGA+CGG 0.551128 4_1:+68271938 Msa0567020:CDS
GAACAATACCATTGAAGCGT+TGG 0.555180 4_1:-68272217 None:intergenic
GGAACAACCAAGTGTATGGA+AGG 0.557687 4_1:+68271077 Msa0567020:CDS
GGTGGATGATCGCATGGTGT+AGG 0.563295 4_1:+68272422 Msa0567020:three_prime_UTR
CAATGAAACCTTACTCAAAG+AGG 0.564712 4_1:+68271405 Msa0567020:CDS
CAATACCATTGAAGCGTTGG+TGG 0.571844 4_1:-68272214 None:intergenic
GATGATGATTAAGACCGTGC+GGG 0.577156 4_1:+68272462 Msa0567020:three_prime_UTR
AGAACTACTATGCAAGGTAA+AGG 0.578238 4_1:-68272605 None:intergenic
GAATTTCAGTCCGTGATGGA+AGG 0.580376 4_1:+68271100 Msa0567020:CDS
TCCGACAGAACTACTATGCA+AGG 0.581868 4_1:-68272611 None:intergenic
GTTCTCATCATGAAGAGACT+TGG 0.586467 4_1:+68270510 Msa0567020:CDS
GTAATTGCACGTGCTTACGT+GGG 0.590100 4_1:-68272663 None:intergenic
AACTTCAAGGAAGAAGAACC+AGG 0.601960 4_1:-68272058 None:intergenic
GGTGTAGGGTCGGAGATGAA+AGG 0.608295 4_1:+68272437 Msa0567020:three_prime_UTR
ACTACTATGCAAGGTAAAGG+AGG 0.609092 4_1:-68272602 None:intergenic
GCTTCAATGGTATTGTTCAG+AGG 0.609163 4_1:+68272222 Msa0567020:CDS
AGAAGTTAAAGAAAGTGAGG+GGG 0.610194 4_1:+68272387 Msa0567020:three_prime_UTR
GAAGGATGTGTTGATGAACC+AGG 0.610489 4_1:+68271133 Msa0567020:CDS
ATGATGATTAAGACCGTGCG+GGG 0.615642 4_1:+68272463 Msa0567020:three_prime_UTR
CTTCTTTAACCAGTGCCCCG+AGG 0.616428 4_1:-68272904 None:intergenic
AAGGGAATTTCAGTCCGTGA+TGG 0.618116 4_1:+68271096 Msa0567020:CDS
GAAGTGTTTGATGGGTGAAG+AGG 0.622629 4_1:+68270256 None:intergenic
GAAGAAACGAAGACTAAGTG+TGG 0.625631 4_1:+68271159 Msa0567020:CDS
AAGCAAAGTTAAAACTCTTG+GGG 0.628816 4_1:-68272734 None:intergenic
ATGATCGCATGGTGTAGGGT+CGG 0.634562 4_1:+68272427 Msa0567020:three_prime_UTR
GTAAGGTTTCATTGTCACGT+TGG 0.635299 4_1:-68271396 None:intergenic
TGGGAGTTAATGGTGATAAG+TGG 0.653445 4_1:+68270312 Msa0567020:CDS
TGGTCTTCCATCTAGCACGA+CGG 0.655214 4_1:-68271303 None:intergenic
GATGATTAAGACCGTGCGGG+GGG 0.656865 4_1:+68272465 Msa0567020:three_prime_UTR
GTTGAAGGTGGATGATCGCA+TGG 0.661272 4_1:+68272416 Msa0567020:three_prime_UTR
AAGCAATTACTCATAGAAGA+CGG 0.662929 4_1:-68272106 None:intergenic
GAACAACCAAGTGTATGGAA+GGG 0.664333 4_1:+68271078 Msa0567020:CDS
GAACCGTCTTTGAAATCCGG+AGG 0.667219 4_1:-68271941 None:intergenic
AAGGATGTGTTGATGAACCA+GGG 0.673289 4_1:+68271134 Msa0567020:CDS
TGATGATTAAGACCGTGCGG+GGG 0.676961 4_1:+68272464 Msa0567020:three_prime_UTR
ATTGCAAGAATCAGAAAACA+CGG 0.678412 4_1:+68271829 Msa0567020:CDS
TCTTTAACCAGTGCCCCGAG+GGG 0.688528 4_1:-68272902 None:intergenic
TTGTTAACCAGTGCCCCTCG+GGG 0.693713 4_1:+68272889 Msa0567020:three_prime_UTR
AGAATCGGATCTAAGAATGG+CGG 0.697638 4_1:-68271864 None:intergenic
TGATGATGATTAAGACCGTG+CGG 0.699818 4_1:+68272461 Msa0567020:three_prime_UTR
GTAAGCACGTGCAATTACGA+AGG 0.717597 4_1:+68272668 Msa0567020:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATATATTTAAAATA+AGG + chr4_1:68272863-68272882 Msa0567020:three_prime_UTR 0.0%
!!! TTTTTATATATTTAAAATAA+GGG + chr4_1:68272864-68272883 Msa0567020:three_prime_UTR 0.0%
!! AATAAATAATGAAGAAAAAA+AGG - chr4_1:68270731-68270750 None:intergenic 10.0%
!! GAACTTTAATTATAAGATTA+AGG - chr4_1:68270494-68270513 None:intergenic 15.0%
!!! AAAAAGGTATTACTTTTTAA+AGG - chr4_1:68270715-68270734 None:intergenic 15.0%
!! TAAAATACATTTATATGCTA+AGG - chr4_1:68271618-68271637 None:intergenic 15.0%
!! AATATAGTGAATAAAAAGGA+AGG - chr4_1:68270783-68270802 None:intergenic 20.0%
!! ATGCAATATAGTGAATAAAA+AGG - chr4_1:68270787-68270806 None:intergenic 20.0%
!!! AAAAATAATTTTACAGCCAA+AGG - chr4_1:68271445-68271464 None:intergenic 20.0%
!! TTAGTGTATTAGATATTCAA+GGG - chr4_1:68271538-68271557 None:intergenic 20.0%
!! TTGAATATCTAATACACTAA+GGG + chr4_1:68271538-68271557 Msa0567020:intron 20.0%
!!! TTTGTATCATATGCTTATTT+TGG + chr4_1:68271717-68271736 Msa0567020:intron 20.0%
!!! TTCATTAATCCATTTTTACA+GGG - chr4_1:68272351-68272370 None:intergenic 20.0%
!!! ATTCATTAATCCATTTTTAC+AGG - chr4_1:68272352-68272371 None:intergenic 20.0%
!!! GTAAAAATGGATTAATGAAT+TGG + chr4_1:68272352-68272371 Msa0567020:three_prime_UTR 20.0%
!!! AAACTCTGTTGTAAAAATTT+TGG + chr4_1:68272527-68272546 Msa0567020:three_prime_UTR 20.0%
!!! TGTTGTAAAAATTTTGGAAT+TGG + chr4_1:68272533-68272552 Msa0567020:three_prime_UTR 20.0%
!!! GTTGTAAAAATTTTGGAATT+GGG + chr4_1:68272534-68272553 Msa0567020:three_prime_UTR 20.0%
!! GAAGATATTTACTATTCTAA+TGG + chr4_1:68272559-68272578 Msa0567020:three_prime_UTR 20.0%
!! TTTGTGTTTTCTCACTTAAA+AGG - chr4_1:68270398-68270417 None:intergenic 25.0%
! AAGATCTGAAGAGAAAAAAA+AGG - chr4_1:68270442-68270461 None:intergenic 25.0%
! AATATGAATTAACCTGTTGT+TGG - chr4_1:68270573-68270592 None:intergenic 25.0%
! AGGAATCAAGCATAAAAAAT+TGG - chr4_1:68270763-68270782 None:intergenic 25.0%
! TTACTGTCATGTTTGATATT+AGG + chr4_1:68270831-68270850 Msa0567020:intron 25.0%
! TACTGTCATGTTTGATATTA+GGG + chr4_1:68270832-68270851 Msa0567020:intron 25.0%
!!! TAGTTGATTTGTCAGAATTA+CGG - chr4_1:68270944-68270963 None:intergenic 25.0%
! ATAATCTCTTTCCAATTGTT+TGG - chr4_1:68271326-68271345 None:intergenic 25.0%
! AAACAATTGGAAAGAGATTA+TGG + chr4_1:68271325-68271344 Msa0567020:CDS 25.0%
! AAGTTTAAGTGCATCATAAT+TGG - chr4_1:68271362-68271381 None:intergenic 25.0%
! TAGTGTATTAGATATTCAAG+GGG - chr4_1:68271537-68271556 None:intergenic 25.0%
! CTTAGTGTATTAGATATTCA+AGG - chr4_1:68271539-68271558 None:intergenic 25.0%
! CTTGAATATCTAATACACTA+AGG + chr4_1:68271537-68271556 Msa0567020:intron 25.0%
! TACACTCTATAAAGATACTT+CGG - chr4_1:68271665-68271684 None:intergenic 25.0%
! AACTACGATTGTTTCAAAAA+CGG + chr4_1:68271896-68271915 Msa0567020:CDS 25.0%
! TTCAGAACAATTAAACTTCA+AGG - chr4_1:68272074-68272093 None:intergenic 25.0%
! AAAAATAAGACATTGTGCAA+CGG + chr4_1:68272306-68272325 Msa0567020:three_prime_UTR 25.0%
!!! TTCTGTCGGATTTTTTTTTT+AGG + chr4_1:68272624-68272643 Msa0567020:three_prime_UTR 25.0%
! AAAGCAAAGTTAAAACTCTT+GGG - chr4_1:68272738-68272757 None:intergenic 25.0%
!! CAAGTGTTGAGAAAAAACAA+AGG + chr4_1:68270281-68270300 Msa0567020:CDS 30.0%
AAAAAACAAAGGTAGACACA+TGG + chr4_1:68270292-68270311 Msa0567020:CDS 30.0%
AAAAACAAAGGTAGACACAT+GGG + chr4_1:68270293-68270312 Msa0567020:CDS 30.0%
GCTTAAACAATTGTGCTAAT+TGG + chr4_1:68270348-68270367 Msa0567020:intron 30.0%
AGTGTATTAGATATTCAAGG+GGG - chr4_1:68271536-68271555 None:intergenic 30.0%
AATATCTAATACACTAAGGG+CGG + chr4_1:68271541-68271560 Msa0567020:intron 30.0%
AATCTCTTTGCATATAATGC+TGG + chr4_1:68271569-68271588 Msa0567020:intron 30.0%
!!! TATCATATGCTTATTTTGGC+AGG + chr4_1:68271721-68271740 Msa0567020:intron 30.0%
ATTGCAAGAATCAGAAAACA+CGG + chr4_1:68271829-68271848 Msa0567020:CDS 30.0%
GTAGTTTAAGTCCTTAGAAT+CGG - chr4_1:68271882-68271901 None:intergenic 30.0%
AAGCAATTACTCATAGAAGA+CGG - chr4_1:68272109-68272128 None:intergenic 30.0%
!! ACTCATGAGTTTAATTTGAG+AGG + chr4_1:68272273-68272292 Msa0567020:three_prime_UTR 30.0%
AAAATCGATCCCTGTAAAAA+TGG + chr4_1:68272339-68272358 Msa0567020:three_prime_UTR 30.0%
AGAGAAGTTAAAGAAAGTGA+GGG + chr4_1:68272385-68272404 Msa0567020:three_prime_UTR 30.0%
GTAAAGGAGGAAAGATAAAT+GGG - chr4_1:68272592-68272611 None:intergenic 30.0%
TTTGGATCCACAATACTAAA+AGG - chr4_1:68272699-68272718 None:intergenic 30.0%
AAGCAAAGTTAAAACTCTTG+GGG - chr4_1:68272737-68272756 None:intergenic 30.0%
GAAAGCAAAGTTAAAACTCT+TGG - chr4_1:68272739-68272758 None:intergenic 30.0%
AATGGTGATAAGTGGTTGTA+TGG + chr4_1:68270320-68270339 Msa0567020:CDS 35.0%
! CTCACTTAAAAGGAGAGTTT+TGG - chr4_1:68270388-68270407 None:intergenic 35.0%
ATGACAATTTGTCCAACAAC+AGG + chr4_1:68270558-68270577 Msa0567020:CDS 35.0%
CAATGCATCTCAACTGAATT+AGG + chr4_1:68270978-68270997 Msa0567020:intron 35.0%
ATATAGAAGAAGAGAGTCCA+AGG + chr4_1:68271056-68271075 Msa0567020:intron 35.0%
ACTAAGTGTGGATCAAGTTA+AGG + chr4_1:68271171-68271190 Msa0567020:CDS 35.0%
AAAACAAGCTTGAACCAGAT+AGG + chr4_1:68271218-68271237 Msa0567020:CDS 35.0%
TAGATGGAAGACCAAACAAT+TGG + chr4_1:68271312-68271331 Msa0567020:CDS 35.0%
CAATGAAACCTTACTCAAAG+AGG + chr4_1:68271405-68271424 Msa0567020:CDS 35.0%
GTTATGTACCTCTTTGAGTA+AGG - chr4_1:68271416-68271435 None:intergenic 35.0%
GGTACATAACTATACTCCTT+TGG + chr4_1:68271426-68271445 Msa0567020:intron 35.0%
TGTATTAGATATTCAAGGGG+GGG - chr4_1:68271534-68271553 None:intergenic 35.0%
GTGTATTAGATATTCAAGGG+GGG - chr4_1:68271535-68271554 None:intergenic 35.0%
ATATCTAATACACTAAGGGC+GGG + chr4_1:68271542-68271561 Msa0567020:intron 35.0%
ATACTTCGGTACAATTCAGA+TGG - chr4_1:68271651-68271670 None:intergenic 35.0%
!!! ATGCTTATTTTGGCAGGTTA+AGG + chr4_1:68271727-68271746 Msa0567020:intron 35.0%
CTTAGAATCGGATCTAAGAA+TGG - chr4_1:68271870-68271889 None:intergenic 35.0%
CATTCTTAGATCCGATTCTA+AGG + chr4_1:68271868-68271887 Msa0567020:CDS 35.0%
GATTGTTTCAAAAACGGTGA+TGG + chr4_1:68271902-68271921 Msa0567020:CDS 35.0%
GAGAGAAGTTAAAGAAAGTG+AGG + chr4_1:68272384-68272403 Msa0567020:three_prime_UTR 35.0%
GAGAAGTTAAAGAAAGTGAG+GGG + chr4_1:68272386-68272405 Msa0567020:three_prime_UTR 35.0%
AGAAGTTAAAGAAAGTGAGG+GGG + chr4_1:68272387-68272406 Msa0567020:three_prime_UTR 35.0%
GGTAAAGGAGGAAAGATAAA+TGG - chr4_1:68272593-68272612 None:intergenic 35.0%
AGAACTACTATGCAAGGTAA+AGG - chr4_1:68272608-68272627 None:intergenic 35.0%
! GGCTAATCCTTTTAGTATTG+TGG + chr4_1:68272689-68272708 Msa0567020:three_prime_UTR 35.0%
TTAACTTTGCTTTCCAAGAG+TGG + chr4_1:68272745-68272764 Msa0567020:three_prime_UTR 35.0%
TGGATTTGAACATAGGATCT+TGG + chr4_1:68272765-68272784 Msa0567020:three_prime_UTR 35.0%
ACGCTTAGATGAGATGATAT+AGG - chr4_1:68272806-68272825 None:intergenic 35.0%
TCATCTCATCTAAGCGTTAT+TGG + chr4_1:68272809-68272828 Msa0567020:three_prime_UTR 35.0%
! CATTGATTACACAGCTTTCA+AGG - chr4_1:68272948-68272967 None:intergenic 35.0%
TGGGAGTTAATGGTGATAAG+TGG + chr4_1:68270312-68270331 Msa0567020:CDS 40.0%
GTTCTCATCATGAAGAGACT+TGG + chr4_1:68270510-68270529 Msa0567020:CDS 40.0%
!! CATGAGAGCACCTAAAGAAT+CGG - chr4_1:68270541-68270560 None:intergenic 40.0%
GAACAACCAAGTGTATGGAA+GGG + chr4_1:68271078-68271097 Msa0567020:CDS 40.0%
GAAATTCCCTTCCATACACT+TGG - chr4_1:68271087-68271106 None:intergenic 40.0%
TTCATCTAGTCCTTCCATCA+CGG - chr4_1:68271113-68271132 None:intergenic 40.0%
ATGGAAGGACTAGATGAAGA+AGG + chr4_1:68271115-68271134 Msa0567020:CDS 40.0%
! AAGGATGTGTTGATGAACCA+GGG + chr4_1:68271134-68271153 Msa0567020:CDS 40.0%
GAAGAAACGAAGACTAAGTG+TGG + chr4_1:68271159-68271178 Msa0567020:CDS 40.0%
TGTGGATCAAGTTAAGGCTT+TGG + chr4_1:68271177-68271196 Msa0567020:CDS 40.0%
GTAAGGTTTCATTGTCACGT+TGG - chr4_1:68271399-68271418 None:intergenic 40.0%
AGAATCGGATCTAAGAATGG+CGG - chr4_1:68271867-68271886 None:intergenic 40.0%
AGTTGCTTCACTATTTCCTC+CGG + chr4_1:68271925-68271944 Msa0567020:CDS 40.0%
TTTCCTCCGGATTTCAAAGA+CGG + chr4_1:68271938-68271957 Msa0567020:CDS 40.0%
!! GAAGAACCGTCTTTGAAATC+CGG - chr4_1:68271947-68271966 None:intergenic 40.0%
AACGCAGCAATTTCTTCATC+TGG + chr4_1:68272004-68272023 Msa0567020:CDS 40.0%
ACGCAGCAATTTCTTCATCT+GGG + chr4_1:68272005-68272024 Msa0567020:CDS 40.0%
! CACAACTTTTTGATGTCTCC+TGG + chr4_1:68272040-68272059 Msa0567020:CDS 40.0%
AACTTCAAGGAAGAAGAACC+AGG - chr4_1:68272061-68272080 None:intergenic 40.0%
GAACAATACCATTGAAGCGT+TGG - chr4_1:68272220-68272239 None:intergenic 40.0%
GCTTCAATGGTATTGTTCAG+AGG + chr4_1:68272222-68272241 Msa0567020:CDS 40.0%
AATGGTATTGTTCAGAGGAG+TGG + chr4_1:68272227-68272246 Msa0567020:CDS 40.0%
! TGATGATGATTAAGACCGTG+CGG + chr4_1:68272461-68272480 Msa0567020:three_prime_UTR 40.0%
ACTACTATGCAAGGTAAAGG+AGG - chr4_1:68272605-68272624 None:intergenic 40.0%
! ACCTTGCATAGTAGTTCTGT+CGG + chr4_1:68272610-68272629 Msa0567020:three_prime_UTR 40.0%
CCTATGTTCAAATCCACTCT+TGG - chr4_1:68272761-68272780 None:intergenic 40.0%
! CCAAGAGTGGATTTGAACAT+AGG + chr4_1:68272758-68272777 Msa0567020:three_prime_UTR 40.0%
GCGTTATTGGATCGTTCTAT+CGG + chr4_1:68272822-68272841 Msa0567020:three_prime_UTR 40.0%
! GGATCGTTCTATCGGATTTT+AGG + chr4_1:68272830-68272849 Msa0567020:three_prime_UTR 40.0%
GGTAGACACATGGGAGTTAA+TGG + chr4_1:68270302-68270321 Msa0567020:CDS 45.0%
CCATACACTTGGTTGTTCCT+TGG - chr4_1:68271076-68271095 None:intergenic 45.0%
CCAAGGAACAACCAAGTGTA+TGG + chr4_1:68271073-68271092 Msa0567020:CDS 45.0%
GGAACAACCAAGTGTATGGA+AGG + chr4_1:68271077-68271096 Msa0567020:CDS 45.0%
AAGGGAATTTCAGTCCGTGA+TGG + chr4_1:68271096-68271115 Msa0567020:CDS 45.0%
! GAATTTCAGTCCGTGATGGA+AGG + chr4_1:68271100-68271119 Msa0567020:CDS 45.0%
! GAAGGATGTGTTGATGAACC+AGG + chr4_1:68271133-68271152 Msa0567020:CDS 45.0%
GCAAGCTTCACTTTCCTATC+TGG - chr4_1:68271235-68271254 None:intergenic 45.0%
! AACCAAGACAGGTTGCTGTT+TGG + chr4_1:68271272-68271291 Msa0567020:CDS 45.0%
AACCAAACAGCAACCTGTCT+TGG - chr4_1:68271277-68271296 None:intergenic 45.0%
TTCAAAACCGTCGTGCTAGA+TGG + chr4_1:68271296-68271315 Msa0567020:CDS 45.0%
CGCAGCAATTTCTTCATCTG+GGG + chr4_1:68272006-68272025 Msa0567020:CDS 45.0%
TCAGACGCAGTTTGTGAAGA+TGG + chr4_1:68272135-68272154 Msa0567020:CDS 45.0%
AACAACCACCAACGCTTCAA+TGG + chr4_1:68272209-68272228 Msa0567020:CDS 45.0%
!! CAATACCATTGAAGCGTTGG+TGG - chr4_1:68272217-68272236 None:intergenic 45.0%
TAAAGAAAGTGAGGGGGAGA+AGG + chr4_1:68272393-68272412 Msa0567020:three_prime_UTR 45.0%
AAAGAAAGTGAGGGGGAGAA+GGG + chr4_1:68272394-68272413 Msa0567020:three_prime_UTR 45.0%
GATGATGATTAAGACCGTGC+GGG + chr4_1:68272462-68272481 Msa0567020:three_prime_UTR 45.0%
ATGATGATTAAGACCGTGCG+GGG + chr4_1:68272463-68272482 Msa0567020:three_prime_UTR 45.0%
TCCGACAGAACTACTATGCA+AGG - chr4_1:68272614-68272633 None:intergenic 45.0%
GTAATTGCACGTGCTTACGT+GGG - chr4_1:68272666-68272685 None:intergenic 45.0%
GTAAGCACGTGCAATTACGA+AGG + chr4_1:68272668-68272687 Msa0567020:three_prime_UTR 45.0%
GGGAGAGTTTATCGCACATT+TGG - chr4_1:68272717-68272736 None:intergenic 45.0%
TATTGTTAACCAGTGCCCCT+CGG + chr4_1:68272887-68272906 Msa0567020:three_prime_UTR 45.0%
!! AAATAAAATAAAAAATACTA+TGG + chr4_1:68270865-68270884 Msa0567020:intron 5.0%
CTTGGCAGCTCCGATTCTTT+AGG + chr4_1:68270528-68270547 Msa0567020:CDS 50.0%
AGTCTTCGTTTCTTCTGCCC+TGG - chr4_1:68271154-68271173 None:intergenic 50.0%
! GTGAAGCTTGCTCAAGAGCT+TGG + chr4_1:68271244-68271263 Msa0567020:CDS 50.0%
!! GCTTGGTTTGCAACCAAGAC+AGG + chr4_1:68271261-68271280 Msa0567020:CDS 50.0%
TGGTCTTCCATCTAGCACGA+CGG - chr4_1:68271306-68271325 None:intergenic 50.0%
!! GAACCGTCTTTGAAATCCGG+AGG - chr4_1:68271944-68271963 None:intergenic 50.0%
GTTGAAGGTGGATGATCGCA+TGG + chr4_1:68272416-68272435 Msa0567020:three_prime_UTR 50.0%
GTGGATGATCGCATGGTGTA+GGG + chr4_1:68272423-68272442 Msa0567020:three_prime_UTR 50.0%
ATGATCGCATGGTGTAGGGT+CGG + chr4_1:68272427-68272446 Msa0567020:three_prime_UTR 50.0%
TGATGATTAAGACCGTGCGG+GGG + chr4_1:68272464-68272483 Msa0567020:three_prime_UTR 50.0%
!! GTGCTTACGTGGGTGTTACT+CGG - chr4_1:68272656-68272675 None:intergenic 50.0%
CGTAATTGCACGTGCTTACG+TGG - chr4_1:68272667-68272686 None:intergenic 50.0%
ATTGTTAACCAGTGCCCCTC+GGG + chr4_1:68272888-68272907 Msa0567020:three_prime_UTR 50.0%
TTCTTTAACCAGTGCCCCGA+GGG - chr4_1:68272906-68272925 None:intergenic 50.0%
GGTGGATGATCGCATGGTGT+AGG + chr4_1:68272422-68272441 Msa0567020:three_prime_UTR 55.0%
GGTGTAGGGTCGGAGATGAA+AGG + chr4_1:68272437-68272456 Msa0567020:three_prime_UTR 55.0%
GATGATTAAGACCGTGCGGG+GGG + chr4_1:68272465-68272484 Msa0567020:three_prime_UTR 55.0%
AAATTAACCCTCCCCCCGCA+CGG - chr4_1:68272479-68272498 None:intergenic 55.0%
TTGTTAACCAGTGCCCCTCG+GGG + chr4_1:68272889-68272908 Msa0567020:three_prime_UTR 55.0%
TCTTTAACCAGTGCCCCGAG+GGG - chr4_1:68272905-68272924 None:intergenic 55.0%
CTTCTTTAACCAGTGCCCCG+AGG - chr4_1:68272907-68272926 None:intergenic 55.0%
GTGAGGGGGAGAAGGGTTGA+AGG + chr4_1:68272401-68272420 Msa0567020:three_prime_UTR 60.0%
AGGGGGAGAAGGGTTGAAGG+TGG + chr4_1:68272404-68272423 Msa0567020:three_prime_UTR 60.0%
ATTAAGACCGTGCGGGGGGA+GGG + chr4_1:68272469-68272488 Msa0567020:three_prime_UTR 60.0%
GATTAAGACCGTGCGGGGGG+AGG + chr4_1:68272468-68272487 Msa0567020:three_prime_UTR 65.0%
ACCAGTGCCCCTCGGGGCAC+TGG + chr4_1:68272895-68272914 Msa0567020:three_prime_UTR 75.0%
! ACCAGTGCCCCGAGGGGCAC+TGG - chr4_1:68272899-68272918 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 68270266 68272985 68270266 ID=Msa0567020;Name=Msa0567020
chr4_1 mRNA 68270266 68272985 68270266 ID=Msa0567020-mRNA-1;Parent=Msa0567020;Name=Msa0567020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.5|1|1|1|4|730|358
chr4_1 exon 68270266 68270341 68270266 ID=Msa0567020-mRNA-1:exon:22474;Parent=Msa0567020-mRNA-1
chr4_1 exon 68270457 68270579 68270457 ID=Msa0567020-mRNA-1:exon:22475;Parent=Msa0567020-mRNA-1
chr4_1 exon 68271062 68271426 68271062 ID=Msa0567020-mRNA-1:exon:22476;Parent=Msa0567020-mRNA-1
chr4_1 exon 68271743 68272985 68271743 ID=Msa0567020-mRNA-1:exon:22477;Parent=Msa0567020-mRNA-1
chr4_1 CDS 68270266 68270341 68270266 ID=Msa0567020-mRNA-1:cds;Parent=Msa0567020-mRNA-1
chr4_1 CDS 68270457 68270579 68270457 ID=Msa0567020-mRNA-1:cds;Parent=Msa0567020-mRNA-1
chr4_1 CDS 68271062 68271426 68271062 ID=Msa0567020-mRNA-1:cds;Parent=Msa0567020-mRNA-1
chr4_1 CDS 68271743 68272255 68271743 ID=Msa0567020-mRNA-1:cds;Parent=Msa0567020-mRNA-1
chr4_1 three_prime_UTR 68272256 68272985 68272256 ID=Msa0567020-mRNA-1:three_prime_utr;Parent=Msa0567020-mRNA-1
Gene Sequence

>Msa0567020

ATGGGTGAAGAGGAACAAGTGTTGAGAAAAAACAAAGGTAGACACATGGGAGTTAATGGTGATAAGTGGTTGTATGATCTTTATTTTCTCGTACTAATCATATTTAACAACCTTAATCTTATAATTAAAGTTCTCATCATGAAGAGACTTGGCAGCTCCGATTCTTTAGGTGCTCTCATGACAATTTGTCCAACAACAGAAGAAGAGAGTCCAAGGAACAACCAAGTGTATGGAAGGGAATTTCAGTCCGTGATGGAAGGACTAGATGAAGAAGGATGTGTTGATGAACCAGGGCAGAAGAAACGAAGACTAAGTGTGGATCAAGTTAAGGCTTTGGAGAAGAATTTTGAAGTTGAAAACAAGCTTGAACCAGATAGGAAAGTGAAGCTTGCTCAAGAGCTTGGTTTGCAACCAAGACAGGTTGCTGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAGACCAAACAATTGGAAAGAGATTATGGTGTTCTCAAAGCCAATTATGATGCACTTAAACTTAATTGTGAGAATCTCCAACGTGACAATGAAACCTTACTCAAAGAGGTTAAGGAATTGAAATCAAGATTGCAAATACAAGAAGAAAACACAACTACTGAAAGCGATGTTTGTGTGAAAGAAGAGTTGATAACATTGCAAGAATCAGAAAACACGGCTTCTGATGAAACCGCCATTCTTAGATCCGATTCTAAGGACTTAAACTACGATTGTTTCAAAAACGGTGATGGAGTTGCTTCACTATTTCCTCCGGATTTCAAAGACGGTTCTTCAGATAGCGATTCAAGTGCAATCTTGAATGACGAAAGCAACGCAGCAATTTCTTCATCTGGGGTTCTTCAAAATCACAACTTTTTGATGTCTCCTGGTTCTTCTTCCTTGAAGTTTAATTGTTCTGAATCGTCGTCATCACCGTCTTCTATGAGTAATTGCTTTCAGTTTCAGACGCAGTTTGTGAAGATGGAAGAGCATAATTTTCTTAGTGCTGATGAGACTTGTGATTTCTTCTCAGATGAACAACCACCAACGCTTCAATGGTATTGTTCAGAGGAGTGGAATTAA

Protein sequence

>Msa0567020

MGEEEQVLRKNKGRHMGVNGDKWLYDLYFLVLIIFNNLNLIIKVLIMKRLGSSDSLGALMTICPTTEEESPRNNQVYGREFQSVMEGLDEEGCVDEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNCENLQRDNETLLKEVKELKSRLQIQEENTTTESDVCVKEELITLQESENTASDETAILRSDSKDLNYDCFKNGDGVASLFPPDFKDGSSDSDSSAILNDESNAAISSSGVLQNHNFLMSPGSSSLKFNCSESSSSPSSMSNCFQFQTQFVKMEEHNFLSADETCDFFSDEQPPTLQWYCSEEWN*