AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376890 MtrunA17_Chr8g0381741 93.590 312 6 2 1 299 1 311 0.0 586
Msa1376890 MtrunA17_Chr3g0123691 56.402 328 86 12 1 298 1 301 9.46e-98 290
Msa1376890 MtrunA17_Chr3g0119291 35.423 319 113 8 1 290 1 255 3.17e-47 159
Msa1376890 MtrunA17_Chr8g0362751 41.711 187 73 5 45 213 81 249 2.43e-30 115
Msa1376890 MtrunA17_Chr5g0416391 40.909 176 82 4 40 195 65 238 2.27e-29 113
Msa1376890 MtrunA17_Chr5g0415941 56.481 108 33 2 43 137 77 183 7.36e-29 112
Msa1376890 MtrunA17_Chr6g0453021 53.271 107 36 2 43 136 86 191 1.01e-27 108
Msa1376890 MtrunA17_Chr6g0450991 52.778 108 38 1 53 147 66 173 1.29e-27 108
Msa1376890 MtrunA17_Chr8g0362151 50.893 112 40 2 38 136 63 172 3.95e-27 107
Msa1376890 MtrunA17_Chr4g0060031 52.041 98 34 1 53 137 94 191 3.36e-23 97.4
Msa1376890 MtrunA17_Chr7g0217111 49.485 97 36 1 53 136 79 175 1.35e-19 86.3
Msa1376890 MtrunA17_Chr8g0346251 38.835 103 50 1 61 150 48 150 9.61e-17 78.2
Msa1376890 MtrunA17_Chr7g0265521 41.584 101 39 2 53 140 62 155 4.79e-16 75.9
Msa1376890 MtrunA17_Chr3g0127511 43.956 91 38 1 56 133 40 130 9.46e-15 72.4
Msa1376890 MtrunA17_Chr1g0179581 41.975 81 34 1 53 120 27 107 6.77e-14 67.0
Msa1376890 MtrunA17_Chr5g0403701 45.545 101 33 2 54 141 53 144 1.49e-13 68.2
Msa1376890 MtrunA17_Chr4g0055851 44.444 99 35 2 50 135 116 207 3.72e-12 65.5
Msa1376890 MtrunA17_Chr4g0071411 41.758 91 33 2 57 134 91 174 1.23e-11 63.2
Msa1376890 MtrunA17_Chr5g0403691 48.649 74 25 1 54 114 53 126 2.34e-11 62.4
Msa1376890 MtrunA17_Chr1g0151971 42.708 96 35 2 53 135 129 217 7.69e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376890 AT2G22430.1 43.314 344 116 13 1 299 2 311 8.52e-69 216
Msa1376890 AT4G40060.1 40.541 333 123 13 1 298 1 293 3.06e-63 201
Msa1376890 AT5G65310.1 38.776 343 134 17 1 299 1 311 1.21e-51 172
Msa1376890 AT5G65310.2 39.073 302 116 13 34 299 24 293 1.74e-48 164
Msa1376890 AT3G01470.1 41.290 155 68 2 53 184 67 221 1.80e-27 108
Msa1376890 AT1G69780.1 50.450 111 42 1 52 149 83 193 1.93e-27 108
Msa1376890 AT3G01220.1 49.091 110 43 1 40 136 73 182 1.78e-25 103
Msa1376890 AT5G15150.1 36.842 209 97 8 1 196 69 255 4.67e-25 102
Msa1376890 AT1G26960.1 48.649 111 44 1 52 149 69 179 1.47e-23 97.4
Msa1376890 AT2G46680.1 41.600 125 58 2 55 164 33 157 3.33e-20 88.2
Msa1376890 AT1G27045.1 49.074 108 41 2 54 148 68 174 1.08e-19 86.3
Msa1376890 AT1G27045.5 49.074 108 41 2 54 148 25 131 2.01e-19 84.3
Msa1376890 AT1G27045.3 49.074 108 41 2 54 148 25 131 2.01e-19 84.3
Msa1376890 AT1G27045.2 49.074 108 41 2 54 148 17 123 2.18e-19 84.0
Msa1376890 AT2G46680.2 39.837 123 61 1 55 164 33 155 4.75e-19 85.1
Msa1376890 AT3G61890.1 42.105 95 42 1 57 138 33 127 1.56e-17 80.5
Msa1376890 AT1G27045.4 49.462 93 34 1 54 133 68 160 8.58e-17 78.6
Msa1376890 AT5G03790.1 43.000 100 37 2 54 140 77 169 7.62e-15 72.8
Msa1376890 AT5G53980.1 38.384 99 48 1 54 139 11 109 8.62e-13 65.5
Msa1376890 AT2G36610.1 36.449 107 40 2 53 138 70 169 9.38e-13 65.9
Msa1376890 AT5G03790.2 48.611 72 24 1 54 112 77 148 9.69e-13 66.2
Msa1376890 AT5G66700.1 39.796 98 46 1 54 138 71 168 6.71e-12 64.3
Msa1376890 AT2G18550.1 30.814 172 76 6 54 202 61 212 8.22e-12 63.9
Msa1376890 AT4G36740.1 43.299 97 35 2 54 137 55 144 2.99e-11 62.4
Msa1376890 AT4G36740.2 43.299 97 35 2 54 137 56 145 3.40e-11 62.4

Find 118 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTTAATTATAAGATTA+AGG 0.225386 tig0019839:+79697 None:intergenic
GCTTAAACAATTGTGCTAAT+TGG 0.244611 tig0019839:-79839 Msa1376890:five_prime_UTR
TCATCTCATCTAAGCGTTAT+TGG 0.260502 tig0019839:-77373 Msa1376890:three_prime_UTR
TTTGGATCCACAATACTAAA+AGG 0.271471 tig0019839:+77486 None:intergenic
GCAAGCTTCACTTTCCTATC+TGG 0.289532 tig0019839:+78957 None:intergenic
CTTGGCAGCTCCGATTCTTT+AGG 0.293153 tig0019839:-79660 Msa1376890:CDS
GCCCCTCGGGGCACTGGTTA+AGG 0.303125 tig0019839:-77281 Msa1376890:three_prime_UTR
GGTAGACACATGGGAGTTAA+TGG 0.303946 tig0019839:-79885 Msa1376890:five_prime_UTR
AAGTTTAAGTGCATCATAAT+TGG 0.307318 tig0019839:+78830 None:intergenic
AACGCAGCAATTTCTTCATC+TGG 0.309720 tig0019839:-78180 Msa1376890:CDS
AAACAATTGGAAAGAGATTA+TGG 0.321657 tig0019839:-78864 Msa1376890:CDS
CATTCTTAGATCCGATTCTA+AGG 0.324209 tig0019839:-78316 Msa1376890:CDS
ATAATCTCTTTCCAATTGTT+TGG 0.328373 tig0019839:+78866 None:intergenic
CCATACACTTGGTTGTTCCT+TGG 0.333790 tig0019839:+79116 None:intergenic
GAAGATATTTACTATTCTAA+TGG 0.344689 tig0019839:-77622 Msa1376890:three_prime_UTR
GTTGTATTATGTTGAGTTGA+TGG 0.363611 tig0019839:+80126 None:intergenic
CGTAATTACACGTGCGTACG+TGG 0.363698 tig0019839:+77518 None:intergenic
GGGAGAGTTTACCGCACATT+TGG 0.366380 tig0019839:+77468 None:intergenic
CATTGATTACACAGCTTTCA+AGG 0.373554 tig0019839:+77237 None:intergenic
AAAGCAAAGTTAAAACTCTT+GGG 0.374481 tig0019839:+77447 None:intergenic
TTCACTTAAAAGGAGAGTTT+TGG 0.375207 tig0019839:+79802 None:intergenic
TGTGTGTTGGAAGTGTTTGA+TGG 0.381386 tig0019839:-79940 Msa1376890:five_prime_UTR
GAAAGCAAAGTTAAAACTCT+TGG 0.393346 tig0019839:+77446 None:intergenic
TTCAGAACAATTAAACTTCA+AGG 0.401312 tig0019839:+78113 None:intergenic
ATTGTTAACCAGTGCCCCTC+GGG 0.410868 tig0019839:-77294 Msa1376890:three_prime_UTR
TGTGGATCAAGTTAAGGCTT+TGG 0.415440 tig0019839:-79012 Msa1376890:CDS
GTTATGTACCTCTTTGAGTA+AGG 0.416508 tig0019839:+78776 None:intergenic
TTCAAAACCGTCGTGCTAGA+TGG 0.422496 tig0019839:-78893 Msa1376890:CDS
CCTAGGTTCAAATCCACTCT+TGG 0.435239 tig0019839:+77424 None:intergenic
CCAAGGAACAACCAAGTGTA+TGG 0.442867 tig0019839:-79116 Msa1376890:CDS
AATATGAATTAACCTGTTGT+TGG 0.443287 tig0019839:+79618 None:intergenic
AACCAAGACAGGTTGCTGTT+TGG 0.456352 tig0019839:-78917 Msa1376890:intron
AACAACCACCAACGCTTCAA+TGG 0.458388 tig0019839:-77975 Msa1376890:CDS
ATGACAATTTGTCCAACAAC+AGG 0.459440 tig0019839:-79630 Msa1376890:intron
GGTAAAGGAGTAAAGATGAA+TGG 0.460572 tig0019839:+77591 None:intergenic
TCAGACGCAGTTTGTGAAGA+TGG 0.461193 tig0019839:-78049 Msa1376890:CDS
ACCAGTGCCCCGAGGGGCAC+TGG 0.462082 tig0019839:+77286 None:intergenic
ACCAGTGCCCCTCGGGGCAC+TGG 0.464112 tig0019839:-77287 Msa1376890:three_prime_UTR
GTAAAGGAGTAAAGATGAAT+GGG 0.465550 tig0019839:+77592 None:intergenic
CCAAGAGTGGATTTGAACCT+AGG 0.465714 tig0019839:-77424 Msa1376890:three_prime_UTR
ACGCTTAGATGAGATGATAT+AGG 0.471754 tig0019839:+77379 None:intergenic
ACTAAGTGTGGATCAAGTTA+AGG 0.472988 tig0019839:-79018 Msa1376890:CDS
TTGTGTTGTGTGTTGTGTGT+TGG 0.473877 tig0019839:-79953 Msa1376890:five_prime_UTR
TTCCTTAACCAGTGCCCCGA+GGG 0.478073 tig0019839:+77279 None:intergenic
GTAGTTTAAGTCCTTAGAAT+CGG 0.480930 tig0019839:+78305 None:intergenic
ACGCAGCAATTTCTTCATCT+GGG 0.483849 tig0019839:-78179 Msa1376890:CDS
GAAGAACCGTCTTTGAAATC+CGG 0.484012 tig0019839:+78240 None:intergenic
AGTCTTCGTTTCTTCTGCCC+TGG 0.485359 tig0019839:+79038 None:intergenic
GTGCGTACGTGGGTGTTACT+CGG 0.490256 tig0019839:+77529 None:intergenic
AGTTGCTTCACTATTTCCTC+CGG 0.491792 tig0019839:-78259 Msa1376890:CDS
GAGAGAAGTTAAAGAAAGTG+AGG 0.495996 tig0019839:-77797 Msa1376890:three_prime_UTR
AATGGTGATAAGTGGTTGTA+TGG 0.498069 tig0019839:-79867 Msa1376890:five_prime_UTR
TCTAGCTTAATCAAGATCCT+AGG 0.499847 tig0019839:+77407 None:intergenic
GTGTGTTGGAAGTGTTTGAT+GGG 0.500292 tig0019839:-79939 Msa1376890:five_prime_UTR
GAGAAGTTAAAGAAAGTGAG+GGG 0.504805 tig0019839:-77795 Msa1376890:three_prime_UTR
TAGATGGAAGACCAAACAAT+TGG 0.511361 tig0019839:-78877 Msa1376890:CDS
CGCAGCAATTTCTTCATCTG+GGG 0.511842 tig0019839:-78178 Msa1376890:CDS
GCGTTATTGGATCGTTCTAT+CGG 0.512212 tig0019839:-77360 Msa1376890:three_prime_UTR
CATGAGAGCACCTAAAGAAT+CGG 0.517449 tig0019839:+79650 None:intergenic
TTAACTTTGCTTTCCAAGAG+TGG 0.517713 tig0019839:-77437 Msa1376890:three_prime_UTR
GAAATTCCCTTCCATACACT+TGG 0.519570 tig0019839:+79105 None:intergenic
AAGGCAACAAACAGAGAAAG+TGG 0.526963 tig0019839:+80084 None:intergenic
TATTGTTAACCAGTGCCCCT+CGG 0.530749 tig0019839:-77295 Msa1376890:three_prime_UTR
ACTCATGAGTTTAATTTGAG+AGG 0.531600 tig0019839:-77908 Msa1376890:three_prime_UTR
AATGGTATTGTTCAGAGGAG+TGG 0.534262 tig0019839:-77957 Msa1376890:CDS
TTCATCTAGTCCTTCCATCA+CGG 0.534291 tig0019839:+79079 None:intergenic
GTGGATGATCGCATGGTGTA+GGG 0.534475 tig0019839:-77758 Msa1376890:three_prime_UTR
ACCTTGCATAGTAGTTCTGT+CGG 0.537846 tig0019839:-77571 Msa1376890:three_prime_UTR
ATATAGAAGAAGAGAGTCCA+AGG 0.540750 tig0019839:-79133 Msa1376890:intron
AAAACAAGCTTGAACCAGAT+AGG 0.540809 tig0019839:-78971 Msa1376890:CDS
AGAGAAGTTAAAGAAAGTGA+GGG 0.544627 tig0019839:-77796 Msa1376890:three_prime_UTR
ATGGAAGGACTAGATGAAGA+AGG 0.546306 tig0019839:-79074 Msa1376890:CDS
CTTAGAATCGGATCTAAGAA+TGG 0.550362 tig0019839:+78317 None:intergenic
TTTCCTCCGGATTTCAAAGA+CGG 0.551128 tig0019839:-78246 Msa1376890:CDS
GAACAATACCATTGAAGCGT+TGG 0.555180 tig0019839:+77967 None:intergenic
GGAACAACCAAGTGTATGGA+AGG 0.557687 tig0019839:-79112 Msa1376890:CDS
AGAACTACTATGCAAGGTAA+AGG 0.560844 tig0019839:+77576 None:intergenic
GGTGGATGATCGCATGGTGT+AGG 0.563295 tig0019839:-77759 Msa1376890:three_prime_UTR
CAATGAAACCTTACTCAAAG+AGG 0.564712 tig0019839:-78784 Msa1376890:intron
CAATACCATTGAAGCGTTGG+TGG 0.571844 tig0019839:+77970 None:intergenic
GATGATGATTAAGACCGTGC+GGG 0.577156 tig0019839:-77719 Msa1376890:three_prime_UTR
GAATTTCAGTCCGTGATGGA+AGG 0.580376 tig0019839:-79089 Msa1376890:CDS
TCCGACAGAACTACTATGCA+AGG 0.581868 tig0019839:+77570 None:intergenic
GTTCTCATCATGAAGAGACT+TGG 0.586467 tig0019839:-79678 Msa1376890:exon
CTTCCTTAACCAGTGCCCCG+AGG 0.595889 tig0019839:+77278 None:intergenic
AGGCAACAAACAGAGAAAGT+GGG 0.597235 tig0019839:+80085 None:intergenic
AACTTCAAGGAAGAAGAACC+AGG 0.601960 tig0019839:+78126 None:intergenic
GGTGTAGGGTCGGAGATGAA+AGG 0.608295 tig0019839:-77744 Msa1376890:three_prime_UTR
GCTTCAATGGTATTGTTCAG+AGG 0.609163 tig0019839:-77962 Msa1376890:CDS
AGAAGTTAAAGAAAGTGAGG+GGG 0.610194 tig0019839:-77794 Msa1376890:three_prime_UTR
GAAGGATGTGTTGATGAACC+AGG 0.610489 tig0019839:-79056 Msa1376890:CDS
ATGATGATTAAGACCGTGCG+GGG 0.615642 tig0019839:-77718 Msa1376890:three_prime_UTR
GTAATTACACGTGCGTACGT+GGG 0.615651 tig0019839:+77519 None:intergenic
AAGGGAATTTCAGTCCGTGA+TGG 0.618116 tig0019839:-79093 Msa1376890:CDS
GAAGTGTTTGATGGGTGAAG+AGG 0.622629 tig0019839:-79931 Msa1376890:five_prime_UTR
GAAGAAACGAAGACTAAGTG+TGG 0.625631 tig0019839:-79030 Msa1376890:CDS
AAGCAAAGTTAAAACTCTTG+GGG 0.628816 tig0019839:+77448 None:intergenic
ATGATCGCATGGTGTAGGGT+CGG 0.634562 tig0019839:-77754 Msa1376890:three_prime_UTR
GTAAGGTTTCATTGTCACGT+TGG 0.635299 tig0019839:+78793 None:intergenic
TTATGTTGAGTTGATGGTGA+AGG 0.638238 tig0019839:+80132 None:intergenic
GGCAACAAACAGAGAAAGTG+GGG 0.643111 tig0019839:+80086 None:intergenic
TGGGAGTTAATGGTGATAAG+TGG 0.653445 tig0019839:-79875 Msa1376890:five_prime_UTR
TGGTCTTCCATCTAGCACGA+CGG 0.655214 tig0019839:+78886 None:intergenic
GATGATTAAGACCGTGCGGG+GGG 0.656865 tig0019839:-77716 Msa1376890:three_prime_UTR
TCCTTAACCAGTGCCCCGAG+GGG 0.658428 tig0019839:+77280 None:intergenic
GTTGAAGGTGGATGATCGCA+TGG 0.661272 tig0019839:-77765 Msa1376890:three_prime_UTR
AAGCAATTACTCATAGAAGA+CGG 0.662929 tig0019839:+78078 None:intergenic
GAACAACCAAGTGTATGGAA+GGG 0.664333 tig0019839:-79111 Msa1376890:CDS
GAACCGTCTTTGAAATCCGG+AGG 0.667219 tig0019839:+78243 None:intergenic
AAGGATGTGTTGATGAACCA+GGG 0.673289 tig0019839:-79055 Msa1376890:CDS
TGATGATTAAGACCGTGCGG+GGG 0.676961 tig0019839:-77717 Msa1376890:three_prime_UTR
ATTGCAAGAATCAGAAAACA+CGG 0.678412 tig0019839:-78355 Msa1376890:CDS
TTGATGGTGAAGGAGTTCAA+AGG 0.690052 tig0019839:+80142 None:intergenic
TTGTTAACCAGTGCCCCTCG+GGG 0.693713 tig0019839:-77293 Msa1376890:three_prime_UTR
AGAATCGGATCTAAGAATGG+CGG 0.697638 tig0019839:+78320 None:intergenic
GTACGCACGTGTAATTACGA+AGG 0.697746 tig0019839:-77514 Msa1376890:three_prime_UTR
TGATGATGATTAAGACCGTG+CGG 0.699818 tig0019839:-77720 Msa1376890:three_prime_UTR
GTATTGTGGATCCAAATGTG+CGG 0.711833 tig0019839:-77479 Msa1376890:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATATATTTAAAATA+AGG - tig0019839:80043-80062 Msa1376890:five_prime_UTR 0.0%
!!! TTTTTATATATTTAAAATAA+GGG - tig0019839:80044-80063 Msa1376890:five_prime_UTR 0.0%
!! AATAAATAATGAAGAAAAAA+AGG + tig0019839:77905-77924 None:intergenic 10.0%
!! TTAAAAAAAATAAAATCCTA+TGG - tig0019839:78037-78056 Msa1376890:CDS 10.0%
!! GAACTTTAATTATAAGATTA+AGG + tig0019839:77668-77687 None:intergenic 15.0%
!!! AAAAAGGTATTACTTTTTAA+AGG + tig0019839:77889-77908 None:intergenic 15.0%
!! TAAAATACATTTATATGCTA+AGG + tig0019839:78796-78815 None:intergenic 15.0%
!!! AAACTCTATTGTAAAAATTT+TGG - tig0019839:79708-79727 Msa1376890:five_prime_UTR 15.0%
!!! TATTGTAAAAATTTTGGAAT+TGG - tig0019839:79714-79733 Msa1376890:five_prime_UTR 15.0%
!!! ATTGTAAAAATTTTGGAATT+GGG - tig0019839:79715-79734 Msa1376890:five_prime_UTR 15.0%
!!! TTACACTGTCAAATTTTTAT+AGG + tig0019839:77309-77328 None:intergenic 20.0%
!!! TTTTTGTGTTTTCACTTAAA+AGG + tig0019839:77573-77592 None:intergenic 20.0%
!! AATATAGTGAATAAAAAGGA+AGG + tig0019839:77957-77976 None:intergenic 20.0%
!! ATGCAATATAGTGAATAAAA+AGG + tig0019839:77961-77980 None:intergenic 20.0%
!! TTTAAAAAAAATCAGACCAT+AGG + tig0019839:78056-78075 None:intergenic 20.0%
!!! AAAAATAATTTTACAGCCAA+AGG + tig0019839:78623-78642 None:intergenic 20.0%
!! TTAGTGTATTAGATATTCAA+GGG + tig0019839:78716-78735 None:intergenic 20.0%
!! TTGAATATCTAATACACTAA+GGG - tig0019839:78716-78735 Msa1376890:intron 20.0%
!!! TTTGTATCATATGCTTATTT+TGG - tig0019839:78895-78914 Msa1376890:CDS 20.0%
!!! TTCATTAATCCATTTTTACA+GGG + tig0019839:79532-79551 None:intergenic 20.0%
!!! ATTCATTAATCCATTTTTAC+AGG + tig0019839:79533-79552 None:intergenic 20.0%
!!! GTAAAAATGGATTAATGAAT+TGG - tig0019839:79533-79552 Msa1376890:intron 20.0%
!! GAAGATATTTACTATTCTAA+TGG - tig0019839:79740-79759 Msa1376890:five_prime_UTR 20.0%
!! CAAATTTTTATAGGCTAAGA+AGG + tig0019839:77300-77319 None:intergenic 25.0%
!!! TTTTTTTTACAACACTGTTC+TGG + tig0019839:77358-77377 None:intergenic 25.0%
! CAAGTGTTAAGAAAAAACAA+AGG - tig0019839:77456-77475 Msa1376890:three_prime_UTR 25.0%
! AATATGAATTAACCTGTTGT+TGG + tig0019839:77747-77766 None:intergenic 25.0%
! AGGAATCAAGCATAAAAAAT+TGG + tig0019839:77937-77956 None:intergenic 25.0%
! TTACTGTCATGTTTGATATT+AGG - tig0019839:78005-78024 Msa1376890:CDS 25.0%
! TACTGTCATGTTTGATATTA+GGG - tig0019839:78006-78025 Msa1376890:CDS 25.0%
!!! TAGTTGATTTGTCAGAATTA+CGG + tig0019839:78117-78136 None:intergenic 25.0%
! ATAATCTCTTTCCAATTGTT+TGG + tig0019839:78499-78518 None:intergenic 25.0%
! AAACAATTGGAAAGAGATTA+TGG - tig0019839:78498-78517 Msa1376890:intron 25.0%
! AAGTTTAAGTGCATCATAAT+TGG + tig0019839:78535-78554 None:intergenic 25.0%
! ATAACTATACTATACTCCTT+TGG - tig0019839:78604-78623 Msa1376890:intron 25.0%
! TAGTGTATTAGATATTCAAG+GGG + tig0019839:78715-78734 None:intergenic 25.0%
! CTTAGTGTATTAGATATTCA+AGG + tig0019839:78717-78736 None:intergenic 25.0%
! CTTGAATATCTAATACACTA+AGG - tig0019839:78715-78734 Msa1376890:intron 25.0%
! TACACTCTATAAAGATACTT+CGG + tig0019839:78843-78862 None:intergenic 25.0%
! AACTACGATTGTTTCAAAAA+CGG - tig0019839:79074-79093 Msa1376890:CDS 25.0%
! TTCAGAACAATTAAACTTCA+AGG + tig0019839:79252-79271 None:intergenic 25.0%
! AAAAATAAGACATTGTGCAA+CGG - tig0019839:79487-79506 Msa1376890:intron 25.0%
! AAAGCAAAGTTAAAACTCTT+GGG + tig0019839:79918-79937 None:intergenic 25.0%
!! GTTGTATTATGTTGAGTTGA+TGG + tig0019839:77239-77258 None:intergenic 30.0%
AAAAAACAAAGGTAGACACA+TGG - tig0019839:77467-77486 Msa1376890:three_prime_UTR 30.0%
AAAAACAAAGGTAGACACAT+GGG - tig0019839:77468-77487 Msa1376890:three_prime_UTR 30.0%
GCTTAAACAATTGTGCTAAT+TGG - tig0019839:77523-77542 Msa1376890:three_prime_UTR 30.0%
! TTCACTTAAAAGGAGAGTTT+TGG + tig0019839:77563-77582 None:intergenic 30.0%
AGATCTGAAGAGAGAAAAAA+AGG + tig0019839:77615-77634 None:intergenic 30.0%
AGTGTATTAGATATTCAAGG+GGG + tig0019839:78714-78733 None:intergenic 30.0%
AATATCTAATACACTAAGGG+CGG - tig0019839:78719-78738 Msa1376890:intron 30.0%
AATCTCTTTGCATATAATGC+TGG - tig0019839:78747-78766 Msa1376890:intron 30.0%
!!! TATCATATGCTTATTTTGGC+AGG - tig0019839:78899-78918 Msa1376890:CDS 30.0%
ATTGCAAGAATCAGAAAACA+CGG - tig0019839:79007-79026 Msa1376890:CDS 30.0%
GTAGTTTAAGTCCTTAGAAT+CGG + tig0019839:79060-79079 None:intergenic 30.0%
AAGCAATTACTCATAGAAGA+CGG + tig0019839:79287-79306 None:intergenic 30.0%
!! ACTCATGAGTTTAATTTGAG+AGG - tig0019839:79454-79473 Msa1376890:intron 30.0%
AAAATCGATCCCTGTAAAAA+TGG - tig0019839:79520-79539 Msa1376890:intron 30.0%
AGAGAAGTTAAAGAAAGTGA+GGG - tig0019839:79566-79585 Msa1376890:intron 30.0%
GTAAAGGAGTAAAGATGAAT+GGG + tig0019839:79773-79792 None:intergenic 30.0%
!!! GTTCTGTCGGATTTTTTTTT+AGG - tig0019839:79804-79823 Msa1376890:five_prime_UTR 30.0%
TTTGGATCCACAATACTAAA+AGG + tig0019839:79879-79898 None:intergenic 30.0%
AAGCAAAGTTAAAACTCTTG+GGG + tig0019839:79917-79936 None:intergenic 30.0%
GAAAGCAAAGTTAAAACTCT+TGG + tig0019839:79919-79938 None:intergenic 30.0%
!! TTATGTTGAGTTGATGGTGA+AGG + tig0019839:77233-77252 None:intergenic 35.0%
AATGGTGATAAGTGGTTGTA+TGG - tig0019839:77495-77514 Msa1376890:three_prime_UTR 35.0%
ATGACAATTTGTCCAACAAC+AGG - tig0019839:77732-77751 Msa1376890:three_prime_UTR 35.0%
CAATGCATCTCAACTGAATT+AGG - tig0019839:78151-78170 Msa1376890:CDS 35.0%
ATATAGAAGAAGAGAGTCCA+AGG - tig0019839:78229-78248 Msa1376890:CDS 35.0%
ACTAAGTGTGGATCAAGTTA+AGG - tig0019839:78344-78363 Msa1376890:CDS 35.0%
AAAACAAGCTTGAACCAGAT+AGG - tig0019839:78391-78410 Msa1376890:CDS 35.0%
TAGATGGAAGACCAAACAAT+TGG - tig0019839:78485-78504 Msa1376890:intron 35.0%
CAATGAAACCTTACTCAAAG+AGG - tig0019839:78578-78597 Msa1376890:intron 35.0%
GTTATGTACCTCTTTGAGTA+AGG + tig0019839:78589-78608 None:intergenic 35.0%
TGTATTAGATATTCAAGGGG+GGG + tig0019839:78712-78731 None:intergenic 35.0%
GTGTATTAGATATTCAAGGG+GGG + tig0019839:78713-78732 None:intergenic 35.0%
ATATCTAATACACTAAGGGC+GGG - tig0019839:78720-78739 Msa1376890:intron 35.0%
ATACTTCGGTACAATTCAGA+TGG + tig0019839:78829-78848 None:intergenic 35.0%
!!! ATGCTTATTTTGGCAGGTTA+AGG - tig0019839:78905-78924 Msa1376890:CDS 35.0%
CTTAGAATCGGATCTAAGAA+TGG + tig0019839:79048-79067 None:intergenic 35.0%
CATTCTTAGATCCGATTCTA+AGG - tig0019839:79046-79065 Msa1376890:CDS 35.0%
GATTGTTTCAAAAACGGTGA+TGG - tig0019839:79080-79099 Msa1376890:CDS 35.0%
GAGAGAAGTTAAAGAAAGTG+AGG - tig0019839:79565-79584 Msa1376890:intron 35.0%
GAGAAGTTAAAGAAAGTGAG+GGG - tig0019839:79567-79586 Msa1376890:intron 35.0%
AGAAGTTAAAGAAAGTGAGG+GGG - tig0019839:79568-79587 Msa1376890:intron 35.0%
GGTAAAGGAGTAAAGATGAA+TGG + tig0019839:79774-79793 None:intergenic 35.0%
AGAACTACTATGCAAGGTAA+AGG + tig0019839:79789-79808 None:intergenic 35.0%
! GGCTAATCCTTTTAGTATTG+TGG - tig0019839:79869-79888 Msa1376890:five_prime_UTR 35.0%
TTAACTTTGCTTTCCAAGAG+TGG - tig0019839:79925-79944 Msa1376890:five_prime_UTR 35.0%
! TCTAGCTTAATCAAGATCCT+AGG + tig0019839:79958-79977 None:intergenic 35.0%
ACGCTTAGATGAGATGATAT+AGG + tig0019839:79986-80005 None:intergenic 35.0%
TCATCTCATCTAAGCGTTAT+TGG - tig0019839:79989-80008 Msa1376890:five_prime_UTR 35.0%
! CATTGATTACACAGCTTTCA+AGG + tig0019839:80128-80147 None:intergenic 35.0%
!! TTGATGGTGAAGGAGTTCAA+AGG + tig0019839:77223-77242 None:intergenic 40.0%
AGGCAACAAACAGAGAAAGT+GGG + tig0019839:77280-77299 None:intergenic 40.0%
AAGGCAACAAACAGAGAAAG+TGG + tig0019839:77281-77300 None:intergenic 40.0%
TTGTGTTGTGTGTTGTGTGT+TGG - tig0019839:77409-77428 Msa1376890:three_prime_UTR 40.0%
!! TGTGTGTTGGAAGTGTTTGA+TGG - tig0019839:77422-77441 Msa1376890:three_prime_UTR 40.0%
!! GTGTGTTGGAAGTGTTTGAT+GGG - tig0019839:77423-77442 Msa1376890:three_prime_UTR 40.0%
TGGGAGTTAATGGTGATAAG+TGG - tig0019839:77487-77506 Msa1376890:three_prime_UTR 40.0%
GTTCTCATCATGAAGAGACT+TGG - tig0019839:77684-77703 Msa1376890:three_prime_UTR 40.0%
!! CATGAGAGCACCTAAAGAAT+CGG + tig0019839:77715-77734 None:intergenic 40.0%
GAACAACCAAGTGTATGGAA+GGG - tig0019839:78251-78270 Msa1376890:CDS 40.0%
GAAATTCCCTTCCATACACT+TGG + tig0019839:78260-78279 None:intergenic 40.0%
TTCATCTAGTCCTTCCATCA+CGG + tig0019839:78286-78305 None:intergenic 40.0%
ATGGAAGGACTAGATGAAGA+AGG - tig0019839:78288-78307 Msa1376890:CDS 40.0%
! AAGGATGTGTTGATGAACCA+GGG - tig0019839:78307-78326 Msa1376890:CDS 40.0%
GAAGAAACGAAGACTAAGTG+TGG - tig0019839:78332-78351 Msa1376890:CDS 40.0%
TGTGGATCAAGTTAAGGCTT+TGG - tig0019839:78350-78369 Msa1376890:CDS 40.0%
GTAAGGTTTCATTGTCACGT+TGG + tig0019839:78572-78591 None:intergenic 40.0%
AGAATCGGATCTAAGAATGG+CGG + tig0019839:79045-79064 None:intergenic 40.0%
AGTTGCTTCACTATTTCCTC+CGG - tig0019839:79103-79122 Msa1376890:CDS 40.0%
TTTCCTCCGGATTTCAAAGA+CGG - tig0019839:79116-79135 Msa1376890:CDS 40.0%
!! GAAGAACCGTCTTTGAAATC+CGG + tig0019839:79125-79144 None:intergenic 40.0%
AACGCAGCAATTTCTTCATC+TGG - tig0019839:79182-79201 Msa1376890:intron 40.0%
ACGCAGCAATTTCTTCATCT+GGG - tig0019839:79183-79202 Msa1376890:intron 40.0%
! CACAACTTTTTGATGTCTCC+TGG - tig0019839:79218-79237 Msa1376890:intron 40.0%
AACTTCAAGGAAGAAGAACC+AGG + tig0019839:79239-79258 None:intergenic 40.0%
GAACAATACCATTGAAGCGT+TGG + tig0019839:79398-79417 None:intergenic 40.0%
GCTTCAATGGTATTGTTCAG+AGG - tig0019839:79400-79419 Msa1376890:intron 40.0%
AATGGTATTGTTCAGAGGAG+TGG - tig0019839:79405-79424 Msa1376890:intron 40.0%
! TGATGATGATTAAGACCGTG+CGG - tig0019839:79642-79661 Msa1376890:CDS 40.0%
! ACCTTGCATAGTAGTTCTGT+CGG - tig0019839:79791-79810 Msa1376890:five_prime_UTR 40.0%
GTATTGTGGATCCAAATGTG+CGG - tig0019839:79883-79902 Msa1376890:five_prime_UTR 40.0%
GCGTTATTGGATCGTTCTAT+CGG - tig0019839:80002-80021 Msa1376890:five_prime_UTR 40.0%
! GGATCGTTCTATCGGATTTT+AGG - tig0019839:80010-80029 Msa1376890:five_prime_UTR 40.0%
GGCAACAAACAGAGAAAGTG+GGG + tig0019839:77279-77298 None:intergenic 45.0%
! GAAGTGTTTGATGGGTGAAG+AGG - tig0019839:77431-77450 Msa1376890:three_prime_UTR 45.0%
GGTAGACACATGGGAGTTAA+TGG - tig0019839:77477-77496 Msa1376890:three_prime_UTR 45.0%
CCATACACTTGGTTGTTCCT+TGG + tig0019839:78249-78268 None:intergenic 45.0%
CCAAGGAACAACCAAGTGTA+TGG - tig0019839:78246-78265 Msa1376890:CDS 45.0%
GGAACAACCAAGTGTATGGA+AGG - tig0019839:78250-78269 Msa1376890:CDS 45.0%
AAGGGAATTTCAGTCCGTGA+TGG - tig0019839:78269-78288 Msa1376890:CDS 45.0%
! GAATTTCAGTCCGTGATGGA+AGG - tig0019839:78273-78292 Msa1376890:CDS 45.0%
! GAAGGATGTGTTGATGAACC+AGG - tig0019839:78306-78325 Msa1376890:CDS 45.0%
GCAAGCTTCACTTTCCTATC+TGG + tig0019839:78408-78427 None:intergenic 45.0%
! AACCAAGACAGGTTGCTGTT+TGG - tig0019839:78445-78464 Msa1376890:intron 45.0%
AACCAAACAGCAACCTGTCT+TGG + tig0019839:78450-78469 None:intergenic 45.0%
TTCAAAACCGTCGTGCTAGA+TGG - tig0019839:78469-78488 Msa1376890:intron 45.0%
CGCAGCAATTTCTTCATCTG+GGG - tig0019839:79184-79203 Msa1376890:intron 45.0%
TCAGACGCAGTTTGTGAAGA+TGG - tig0019839:79313-79332 Msa1376890:intron 45.0%
AACAACCACCAACGCTTCAA+TGG - tig0019839:79387-79406 Msa1376890:intron 45.0%
!! CAATACCATTGAAGCGTTGG+TGG + tig0019839:79395-79414 None:intergenic 45.0%
TAAAGAAAGTGAGGGGGAGA+AGG - tig0019839:79574-79593 Msa1376890:intron 45.0%
AAAGAAAGTGAGGGGGAGAA+GGG - tig0019839:79575-79594 Msa1376890:intron 45.0%
GATGATGATTAAGACCGTGC+GGG - tig0019839:79643-79662 Msa1376890:CDS 45.0%
ATGATGATTAAGACCGTGCG+GGG - tig0019839:79644-79663 Msa1376890:CDS 45.0%
TCCGACAGAACTACTATGCA+AGG + tig0019839:79795-79814 None:intergenic 45.0%
GTAATTACACGTGCGTACGT+GGG + tig0019839:79846-79865 None:intergenic 45.0%
GTACGCACGTGTAATTACGA+AGG - tig0019839:79848-79867 Msa1376890:five_prime_UTR 45.0%
CCTAGGTTCAAATCCACTCT+TGG + tig0019839:79941-79960 None:intergenic 45.0%
! CCAAGAGTGGATTTGAACCT+AGG - tig0019839:79938-79957 Msa1376890:five_prime_UTR 45.0%
TATTGTTAACCAGTGCCCCT+CGG - tig0019839:80067-80086 Msa1376890:five_prime_UTR 45.0%
CTTGGCAGCTCCGATTCTTT+AGG - tig0019839:77702-77721 Msa1376890:three_prime_UTR 50.0%
AGTCTTCGTTTCTTCTGCCC+TGG + tig0019839:78327-78346 None:intergenic 50.0%
! GTGAAGCTTGCTCAAGAGCT+TGG - tig0019839:78417-78436 Msa1376890:CDS 50.0%
!! GCTTGGTTTGCAACCAAGAC+AGG - tig0019839:78434-78453 Msa1376890:CDS 50.0%
TGGTCTTCCATCTAGCACGA+CGG + tig0019839:78479-78498 None:intergenic 50.0%
!! GAACCGTCTTTGAAATCCGG+AGG + tig0019839:79122-79141 None:intergenic 50.0%
GTTGAAGGTGGATGATCGCA+TGG - tig0019839:79597-79616 Msa1376890:intron 50.0%
GTGGATGATCGCATGGTGTA+GGG - tig0019839:79604-79623 Msa1376890:intron 50.0%
ATGATCGCATGGTGTAGGGT+CGG - tig0019839:79608-79627 Msa1376890:intron 50.0%
TGATGATTAAGACCGTGCGG+GGG - tig0019839:79645-79664 Msa1376890:CDS 50.0%
CGTAATTACACGTGCGTACG+TGG + tig0019839:79847-79866 None:intergenic 50.0%
GGGAGAGTTTACCGCACATT+TGG + tig0019839:79897-79916 None:intergenic 50.0%
ATTGTTAACCAGTGCCCCTC+GGG - tig0019839:80068-80087 Msa1376890:five_prime_UTR 50.0%
GGTGGATGATCGCATGGTGT+AGG - tig0019839:79603-79622 Msa1376890:intron 55.0%
GGTGTAGGGTCGGAGATGAA+AGG - tig0019839:79618-79637 Msa1376890:intron 55.0%
GATGATTAAGACCGTGCGGG+GGG - tig0019839:79646-79665 Msa1376890:CDS 55.0%
AAATTAACCCTCCCCCCGCA+CGG + tig0019839:79660-79679 None:intergenic 55.0%
!! GTGCGTACGTGGGTGTTACT+CGG + tig0019839:79836-79855 None:intergenic 55.0%
TTGTTAACCAGTGCCCCTCG+GGG - tig0019839:80069-80088 Msa1376890:five_prime_UTR 55.0%
TTCCTTAACCAGTGCCCCGA+GGG + tig0019839:80086-80105 None:intergenic 55.0%
GTGAGGGGGAGAAGGGTTGA+AGG - tig0019839:79582-79601 Msa1376890:intron 60.0%
AGGGGGAGAAGGGTTGAAGG+TGG - tig0019839:79585-79604 Msa1376890:intron 60.0%
ATTAAGACCGTGCGGGGGGA+GGG - tig0019839:79650-79669 Msa1376890:CDS 60.0%
TCCTTAACCAGTGCCCCGAG+GGG + tig0019839:80085-80104 None:intergenic 60.0%
CTTCCTTAACCAGTGCCCCG+AGG + tig0019839:80087-80106 None:intergenic 60.0%
GATTAAGACCGTGCGGGGGG+AGG - tig0019839:79649-79668 Msa1376890:CDS 65.0%
!! GCCCCTCGGGGCACTGGTTA+AGG - tig0019839:80081-80100 Msa1376890:five_prime_UTR 70.0%
ACCAGTGCCCCTCGGGGCAC+TGG - tig0019839:80075-80094 Msa1376890:five_prime_UTR 75.0%
! ACCAGTGCCCCGAGGGGCAC+TGG + tig0019839:80079-80098 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0019839 gene 77219 80165 77219 ID=Msa1376890;Name=Msa1376890
tig0019839 mRNA 77219 80165 77219 ID=Msa1376890-mRNA-1;Parent=Msa1376890;Name=Msa1376890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=474|0.66|0.5|1|1|1|4|732|299
tig0019839 exon 77219 78463 77219 ID=Msa1376890-mRNA-1:exon:5389;Parent=Msa1376890-mRNA-1
tig0019839 exon 78785 78928 78785 ID=Msa1376890-mRNA-1:exon:5388;Parent=Msa1376890-mRNA-1
tig0019839 exon 78968 79149 78968 ID=Msa1376890-mRNA-1:exon:5387;Parent=Msa1376890-mRNA-1
tig0019839 exon 79631 80165 79631 ID=Msa1376890-mRNA-1:exon:5386;Parent=Msa1376890-mRNA-1
tig0019839 five_prime_UTR 79692 80165 79692 ID=Msa1376890-mRNA-1:five_prime_utr;Parent=Msa1376890-mRNA-1
tig0019839 CDS 79631 79691 79631 ID=Msa1376890-mRNA-1:cds;Parent=Msa1376890-mRNA-1
tig0019839 CDS 78968 79149 78968 ID=Msa1376890-mRNA-1:cds;Parent=Msa1376890-mRNA-1
tig0019839 CDS 78785 78928 78785 ID=Msa1376890-mRNA-1:cds;Parent=Msa1376890-mRNA-1
tig0019839 CDS 77951 78463 77951 ID=Msa1376890-mRNA-1:cds;Parent=Msa1376890-mRNA-1
tig0019839 three_prime_UTR 77219 77950 77219 ID=Msa1376890-mRNA-1:three_prime_utr;Parent=Msa1376890-mRNA-1
Gene Sequence

>Msa1376890

ATGAAGAGACTTGGCAGCTCCGATTCTTTAGGTGCTCTCATGACAATTTGTCCAACAACAGAAGAAGAGAGTCCAAGGAACAACCAAGTGTATGGAAGGGAATTTCAGTCCGTGATGGAAGGACTAGATGAAGAAGGATGTGTTGATGAACCAGGGCAGAAGAAACGAAGACTAAGTGTGGATCAAGTTAAGGCTTTGGAGAAGAATTTTGAAGTTGAAAACAAGCTTGAACCAGATAGGAAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAGACCAAACAATTGGAAAGAGATTATGGTGTTCTCAAAGCCAATTATGATGCACTTAAACTTAATTGTGAGAATCTCCAACGTGACAATGAAACCTTACTCAAAGAGGTTAAGGAATTGAAATCAAGATTGCAAATACAAGAAGAAAACACAACTACTGAAAGCGATGTTTGTGTGAAAGAAGAGTTGATAACATTGCAAGAATCAGAAAACACGGCTTCTGATGAAACCGCCATTCTTAGATCCGATTCTAAGGACTTAAACTACGATTGTTTCAAAAACGGTGATGGAGTTGCTTCACTATTTCCTCCGGATTTCAAAGACGGTTCTTCAGATAGCGATTCAAGTGCAATCTTGAATGACGAAAGCAACGCAGCAATTTCTTCATCTGGGGTTCTTCAAAATCACAACTTTTTGATGTCTCCTGGTTCTTCTTCCTTGAAGTTTAATTGTTCTGAATCGTCGTCATCACCGTCTTCTATGAGTAATTGCTTTCAGTTTCAGACGCAGTTTGTGAAGATGGAAGAGCATAATTTTCTTAGTGCTGATGAGACTTGTGATTTCTTCTCAGATGAACAACCACCAACGCTTCAATGGTATTGTTCAGAGGAGTGGAATTAA

Protein sequence

>Msa1376890

MKRLGSSDSLGALMTICPTTEEESPRNNQVYGREFQSVMEGLDEEGCVDEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVAVWFQNRRARWKTKQLERDYGVLKANYDALKLNCENLQRDNETLLKEVKELKSRLQIQEENTTTESDVCVKEELITLQESENTASDETAILRSDSKDLNYDCFKNGDGVASLFPPDFKDGSSDSDSSAILNDESNAAISSSGVLQNHNFLMSPGSSSLKFNCSESSSSPSSMSNCFQFQTQFVKMEEHNFLSADETCDFFSDEQPPTLQWYCSEEWN*